C_atra_RNA1_ATCACG_L002_R2_001.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	C_atra_RNA1_ATCACG_L002_R2_001.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	169567079
Sequences flagged as poor quality	0
Sequence length	35-250
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CACAATCATAACAATATATAATCAATTAAAACATTTAAAAATTTAGTAAA	717614	0.4232036101771854	No Hit
GTTTATCACAATCATAACAATATATAATCAATTAAAACATTTAAAAATTT	472938	0.2789090917819018	No Hit
ATCCATTTCACCTAGTAGAGTTTAGCCCTTGACCCTTAACAGGTTCAATA	389952	0.22996916754106497	No Hit
ATTTTTTCTTCGTTCGACGATAATAACCAAGTTTTTATGTCTTCATACTT	341910	0.2016370170532925	No Hit
CACAATCATAACAATATAATCAATTAAAACATTTAAAAATTTAGTAAAGG	339107	0.19998398391942576	No Hit
CTTTTTTCAACAAACCATAAAGATATTGGTACTTTATATATTTTATTCGG	332022	0.195805696458332	No Hit
GGACAATTAGGATTCCAGGATGCAGCTTCTCCTTTAATGGAAGAGCTAAT	232290	0.13699003448658806	No Hit
GTTTATCACAATCATAACAATATAATCAATTAAAACATTTAAAAATTTAG	227650	0.13425365427212438	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACCTAG	165415	77.26644	9
TCATAAC	425850	62.75005	6
CACAATC	451545	60.084282	1
TCACCTA	228975	56.33265	8
TTATCAC	328850	54.16419	3
GTTTATC	345085	52.790314	1
CATAACA	511250	52.59365	7
CAATTAG	146185	51.00769	4
CAATCAT	526695	51.00179	3
ATCATAA	528070	50.804005	5
TATCACA	354465	50.330368	4
AATCATA	540605	49.662853	4
ACAATCA	599355	44.86146	2
TTCGTTC	222175	39.982582	9
ATCCATT	327980	39.943745	1
TTCACCT	339400	39.250675	7
TTCTTCG	235710	38.554996	6
TAACAAT	736575	37.04181	9
CTATTCG	89235	35.255177	2
CCATTTC	385125	34.81339	3