Principles of Systematics - Integrative Biology 467

Optional Reading List for Integrative Biology (IB) 467

Avise, J. C. 2004.  Molecular Markers, Natural History, and Evolution, 2nd ed. Sunderland, MA: Sinauer Associates, Inc.

Avise, J. C. 2006. Evolutionary Pathways in Nature: A Phylogenetic Approach. New York: Cambridge University Press.

Brooks, D.R. and D.A. McLennan.  1991.  Phylogeny, Ecology, and Behavior.  A Research Program in Comparative Biology.  Chicago:  The University of Chicago Press. 

Darlington, P. J. 1957.  Zoogeography: The Geographical Distribution of Animals.  Cambridge, MA: Harvard University Press.

Endler, J. A. 1977.  Geographic Variation, Speciation and Clines.  Princeton: Princeton University Press.

Farris, J. 1970. Methods for computing Wagner trees. Systematic Zoology 19: 83-92.

Felsenstein, J. 2004. Inferring Phylogenies.  Sunderland, MA:  Sinauer Associates, Inc.

Greuter, W., H.M. Burdet, W.G. Chaloner et al. (eds.).  1988.  International Code of Botanical Nomenclature Adopted by the Fourteenth International Botanical Congress, Berlin, July-August 1987.  Regnum Vegetabile, Vol. 118, Koeltz, Königstein.

Harvey, P., A. J. L. Brown, J. M. Smith, and S. Nee. (eds.). 1996.  New Uses for New Phylogenies. Oxford: Oxford University Press.

Hall, B.G. 2007.  Phylogenetic Trees Made Easy.  A How-to Manual 3rd ed.  Sunderland, MA:  Sinauer Associates, Inc.

Hennig, W. 1966 (English transl. by D. D. Davis and R. Zangerl).  Phylogenetic Systematics.  Urbana: Univ. Illinois Press.

Higgs, P. G. and T. K. Attwood. 2005.  Bioinformatics and Molecular Evolution. Oxford: Blackwell Publishing.

Hillis, D.M., C. Moritz, and B. Mable (eds.). 1996.  Molecular Systematics, 2nd ed.  Sunderland, MA: Sinauer Associates, Inc.

Howard, D. and Berlocher, S. Endless Forms. 199?.

Hull, D. L. 1988.  Science as a Process: An Evolutionary Account of the Social and Conceptual Development of Science.  Chicago: The University of Chicago Press.  [History Library]

Huson, D, Rupp, R, and Scornavacca, C. 2011. Phylogenetic Networks. Concepts, Algorithms and Applications. Cambridge University Press. (ISBN: 9780521755962).

Judd, W.S., C.C. Campbell, E.A. Kellogg, P.F. Stevens, and M.J. Donoghue. 2002.  Plant Systematics, A Phylogenetic Approach, 2nd ed.  Sunderland, MA:  Sinauer Associates, Inc.

Kitching, I.J., P.L. Forey, C.J. Humphries, and D. Williams. 1998.  Cladistics, 2nd ed., The Theory and Practice of Parsimony Analysis. Oxford University Press. 

Li, W.-H. 1997.  Molecular Evolution. Sunderland, Massachusetts: Sinauer Associates, Inc. 

Maddison, D.R. and W.P. Maddison. 2000.  MacClade 4:  Analysis of Phylogeny and Character Evolution. Sunderland, MA: Sinauer Associates, Inc.

Martins, E.P. (ed.) 1996.  Phylogenies and the Comparative Method in Animal Behavior.  New York:  Oxford University Press. 

______. 1982.  The Growth of Biological Thought: Diversity, Evolution, and Inheritance.  Cambridge, MA: Belknap Press, Harvard University.

______ and W. B. Provine (eds.).  1980.  The Evolutionary Synthesis: Perspectives on the Unification of Biology.  Cambridge, MA: Harvard University Press.

Mayr, E. 1982. The Growth of Biological Thought. Harvard Univ. Press, Cambridge, Mass.

______ and P. D. Ashlock. 1991.  Principles of Systematic Zoology, 2nd ed.   New York: McGraw Hill, Inc.

Page, R.D.M. and E.C. Holmes. 1998.  Molecular Evolution:  A Phylogenetic Approach.  London:  Blackwell Science Ltd.

Quicke, D. L. J. 1993.  Principles and Techniques of Contemporary Taxonomy. New York: Chapman and Hall.

Ride, W. D. L., C. W. Sabrosky, G. Bernardi and R. V. Melville. 1985.  International Code of Zoological Nomenclature. (3rd Edition). Berkeley: University of California Press.

Ridley, M. 1986.  Evolution and Classification: The Reformation of Cladism. London and New York: Longman.

Salemi, M. and A-M. Vandamme. 2003.  The Phylogenetic Handbook, A Practical Approach to DNA and Protein Phylogeny. Cambridge: Cambridge University Press.

Schuh, R.T. 2000.  Biological Systematics: Principles and Applications. New York:  Cornell University Press. 

Semple, C. and M. Steel. 2003.  Phylogenetics. Oxford: Oxford University Press.

Simpson, G. G. 1961.  Principles of Animal Taxonomy. New York: Columbia University Press.

Sneath, P. H. A. and R. R. Sokal. 1973.  Numerical Taxonomy: The Principles and Practice of Numerical Classification. San Francisco: Freeman.

Sober, E. 1988.  Reconstructing the Past: Parsimony, Evolution and Inference. Cambridge, MA: MIT Press.  [Main Library, Engineering Library]

Wiens, J. .J. (ed.). 2000.  Phylogenetic Analysis of Morphological Data.  Washington:  Smithsonian Institution Press. 

Wiley, E. O. 1981.  Phylogenetics. The Theory and Practice of Phylogenetic Systematics.  New York: John Wiley & Sons.

_____, D. Siegel-Causey, D.R. Brooks and V.A. Funk. 1991.  The Complete Cladist.  A Primer of Phylogenetic Procedures.  Special Publication No. 19.  Lawrence: The University of Kansas Museum of Natural History.

Winston, J. E. 1999.  Describing species. Practical Taxonomic Procedures for Biologists.  New York:  Columbia University Press.

Yang, Z. 2006.  Computational Molecular Evolution. Oxford: Oxford University Press.

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