TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00037470__3825.m02851aconitate_hydratase_1_family_protein
(984 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09035 776 0.0
14868 65 1e-10
29203 31 3.1
>09035
Length = 1950
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/601 (60%), Positives = 471/601 (78%), Gaps = 2/601 (0%)
Frame = +3
Query: 381 LADRATIANMAPEYGATMGYFPIDAQSVDYLKLTGRDSHKVKVIESYLREQGLFR--TSS 438
+ADRATI+NM PEYGAT +FP+D QS+ YL+ TGRD K+K+IE YL+ LFR
Sbjct: 3 IADRATISNMCPEYGATTSFFPVDQQSLAYLRQTGRDEEKIKMIEQYLQATMLFRDYNDP 182
Query: 439 SKDPVYTGAVLELDLASVQPCISGPKRPHDRVPLNEMKSEWNQILTAKTGFKGFGLTEQQ 498
S+DP+++ V+ELDL+SV PC SGPK PHD+VP+++MK+++ L K G KG+ + E +
Sbjct: 183 SQDPLFS-QVVELDLSSVVPCCSGPKLPHDKVPVSDMKTDFQACLNNKVGRKGYAIPEDK 359
Query: 499 SKKTHTFNYKGTDYTLSNGSVVVAAITSCTNTSNPDSMVAAGLLAKAAVEKGLNVKPYIK 558
+ Y+G ++TLS+GSVV+AAITSCTNTSNP M+ AGLLAK AVE GL+V+PYIK
Sbjct: 360 QRTVVPMVYEGKEFTLSHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVRPYIK 539
Query: 559 TTLSPGSGVVTKYFVESGVQSYLEQLGFTTAGYGCMTCIGNTGELEPEVDQAIRQGDVVA 618
T+LSPGSGVVT Y +SGV YLE+LGF GYGCMTCIGN+G L EV AI +GD+VA
Sbjct: 540 TSLSPGSGVVTYYLRDSGVTEYLEKLGFDIVGYGCMTCIGNSGPLPDEVAAAIEKGDLVA 719
Query: 619 AAVLSGNRNFEGRIHPLTRANYLASPALVVAYALAGTVNIDFETEPIGTDKHGKAVFLKD 678
VLSGNRNFEGRIHPLTRANYLASP LV+AYALAGTVNIDFETEP+GT+ GK VFL+D
Sbjct: 720 CGVLSGNRNFEGRIHPLTRANYLASPPLVIAYALAGTVNIDFETEPLGTNAEGKPVFLRD 899
Query: 679 IWPSRTFTQDTVHKSLRPEMFSEVYKRISQGTARWNALKASDKKVYDWKAESTYIHNPPF 738
IWPSR Q +S+ P MF++VY RIS+G +RWN L+ D ++Y W +STYI NPPF
Sbjct: 900 IWPSRAEIQAVEKQSVVPTMFNDVYSRISKGNSRWNGLEVPDSELYTWDEKSTYIKNPPF 1079
Query: 739 FQTTELVPKPVQSIKSAYCLLNLGDSITTDHISPAGNIAKNSPAARYLNERGIQSKDFNT 798
F P++S+ AY LLNLGDS+TTDHISPAG+IA+NS AARYL+++G+ ++FN+
Sbjct: 1080FDGMTQELPPLRSVSDAYALLNLGDSVTTDHISPAGSIARNSAAARYLSKQGLVPREFNS 1259
Query: 799 YGARRGNDEIMARGTFANVRLINKMMDKVGPETVHIPSGQKLAVFDAAEKYQKEGHQLIV 858
YG+RRG+D++MA GTFAN+RL+NK + K GP TVHIPSGQ++ V+D A +Y++EG +++
Sbjct: 1260YGSRRGHDDVMACGTFANIRLVNKFLSKPGPRTVHIPSGQEMDVYDVALRYKEEGRTVVI 1439
Query: 859 LAGQEYGSGSSRDWAAKGPYLQGIKAVIAQSYERIHRSNLVGMGILPCEFLNGQNADSLG 918
LAG+EYGSGSSRDWAAKGP++ G++AVIA+SYERIHRSNLVGMGILP ++L Q+A+SLG
Sbjct: 1440LAGKEYGSGSSRDWAAKGPWILGVRAVIAESYERIHRSNLVGMGILPLQYLPDQSAESLG 1619
Query: 919 LNGHETFNIDLKGGNLKVNEVLTVTTSTGKSFQVKTRLDTDVEIAYFQNGGILQYVLRKL 978
L G ETF++ + +L ++L V S G SFQVK R DT+VE+ YF++GGIL Y++R++
Sbjct: 1620LTGKETFSVHVP-DDLSTGQILEVKVSEGGSFQVKARFDTEVELTYFRHGGILNYMVRRM 1796
Query: 979 V 979
V
Sbjct: 1797V 1799
>14868
Length = 751
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 3/268 (1%)
Frame = +1
Query: 401 FPIDAQSVDYLKLTGRDSHKVKVIESYLREQGLFRTSSSKDP-VYTGAVLELDLASVQPC 459
FP + + DYLK T R + + SY + S DP V+E+DL ++P
Sbjct: 10 FPFNYRMQDYLKATXR-ADIADLANSY-------KNLLSADPNAQYDQVIEIDLDKLEPH 165
Query: 460 ISGPKRPHDRVPLNEMKSEWNQILTAKTGFKGFGLTEQQSKKTHTFNYKGTDYTLSNGSV 519
++GP P P++++ TAK G+ + +
Sbjct: 166 VNGPFTPDLAHPISKLGE------TAKK--NGWPM-----------------------DI 252
Query: 520 VVAAITSCTNTSNPDSMVAAGLLAKAAVEKGLNVKPYIKTTLSPGSGVVTKYFVESGVQS 579
V I SCTN+S D M + +A+ A++ GL K T++PGS + G+
Sbjct: 253 RVGLIGSCTNSSYED-MGRSVSIAQQALDHGLTSKSAF--TVTPGSEQIRATIERDGMAQ 423
Query: 580 YLEQLGFTTAGYGCMTCIGNTGELEPEVDQAIRQGDVVAAAVLSGNRNFEGR--IHPLTR 637
L +G C CIG Q +++G+ V S NRNF GR +P T
Sbjct: 424 TLRDIGGVVLANACGPCIGQWDR------QDVKKGE-KNTIVTSYNRNFTGRNDANPATH 582
Query: 638 ANYLASPALVVAYALAGTVNIDFETEPI 665
A ++ SP LV A ++AG ++ + ET+ +
Sbjct: 583 A-FVTSPELVTALSIAGDLSFNPETDEL 663
>29203
Length = 839
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 30/66 (45%)
Frame = +3
Query: 474 EMKSEWNQILTAKTGFKGFGLTEQQSKKTHTFNYKGTDYTLSNGSVVVAAITSCTNTSNP 533
EM WN IL F GLT Q K ++ Y LSNG + +A +T T N
Sbjct: 180 EMPGTWNHILRQIGMFSFTGLTPDQVKIMVEDHHV---YMLSNGRISMAGLT----TKNV 338
Query: 534 DSMVAA 539
D +V A
Sbjct: 339 DYVVDA 356
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00112550__3812.m02366Transketolase,
_pyridine_binding_domain_containing_protein
(654 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12789 708 0.0
13605 30 2.3
18628 30 3.2
07982 30 3.7
>12789
Length = 2095
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/617 (55%), Positives = 438/617 (70%), Gaps = 2/617 (0%)
Frame = +3
Query: 39 IEALQDVANRLRILSMKMTNASNSGHPTSCASMAEFLSVMFFDKSGMRIKSDNPKSFVAD 98
++AL+D+AN+LRI S++ T+ASNSGHPTSC+S AE +SV+FF M+ + P+ D
Sbjct: 105 LQALRDIANKLRIHSIESTSASNSGHPTSCSSAAEIMSVLFFHT--MKYSIEEPRGPSND 278
Query: 99 RLVLSKGHTAPILYAAWGIAGLYTEEQLMTLRKFDSDLEGHPTPRLPFVDVATGSLGQGL 158
R VLSKGH APILYAAW AGL+ L LRK DSDLEGHPTPRL FVDVATGSLGQGL
Sbjct: 279 RFVLSKGHAAPILYAAWAEAGLFPTADLKNLRKIDSDLEGHPTPRLNFVDVATGSLGQGL 458
Query: 159 GVACGMAYTSKYHDSLNNRFWCILGDGECAEGSVWEAAHFAGIYKLDNLIAVVDVNRLGQ 218
A GMAYT KY D R +CI+GDGE AEGSVWEA FA YKLDNL+ V DVNRLGQ
Sbjct: 459 SCAAGMAYTGKYFDKAGYRVYCIIGDGESAEGSVWEAMAFASEYKLDNLVVVFDVNRLGQ 638
Query: 219 SEATSLGHNTNVYKKRFEAFGWNALVVDGHDIEALIKAFNECKHKANQPSIIIAKTLKGK 278
S+ATSLGH+ +VYK R EAFGWN VVDGHD+E L + F + N+P+ ++AKT KG
Sbjct: 639 SQATSLGHSMDVYKARAEAFGWNTYVVDGHDVEGLSRVFYDASQVKNKPTCVLAKTFKGN 818
Query: 279 GLPNIEDQENWHGKPVGNKIDDLIKHLEEQLVDKNRKLTTIPPENAEEITLHSDAIKLPE 338
+ I DQ+NWHGK +G++ DD +K L +QL +K T P +++ +++ I L E
Sbjct: 819 AIQGISDQDNWHGKALGDRADDAVKALTDQLANKGHHGITPPVPDSKAPVINTTNITLSE 998
Query: 339 L-SYKKGQQVATRFAYGDALKRLGGVDTYRRICSLDGDTKNSTYALTFKNAFPDRFVECY 397
+Y GQ VATR AYG AL ++G T R+ SLDGD KNST+A FK A+PDRFVEC+
Sbjct: 999 XPAYTMGQLVATRAAYGTALVKVG--KTNDRVISLDGDVKNSTFASKFKEAYPDRFVECF 1172
Query: 398 IAEQNLVSVSIGLSARNK-IPFASTFGAFFSRAYDHIRMAGVSKVNIKLVGSHSGVSIGE 456
IAEQNLV V+IG R + +PF STF AF SRA+D IRMA +S+ N+ GSH+G+SIGE
Sbjct: 1173IAEQNLVGVAIGCETRRRTVPFVSTFAAFLSRAFDQIRMAAISQSNVNFCGSHAGISIGE 1352
Query: 457 DGPSQMALEDFAMFRAIPDAVVLYPSDAVSCERAVELATNHHGIVYIRTSRPATEVVYDN 516
DGPSQMALED AMFR+IPD V YPSDAVS ERAVELA N G+ +IRTSRP V+Y
Sbjct: 1353DGPSQMALEDIAMFRSIPDCTVFYPSDAVSTERAVELAANTRGMCFIRTSRPNVPVIYQP 1532
Query: 517 HEEFHLGQSKVHGKTDSDKILIIGGGITFESAMKAQKTLAAEGIHARVMDIFSIKPIDRD 576
E F +G++KV ++ SD++ +IG +T AMKA LA G++ R++D F+IKP+D D
Sbjct: 1533SETFTVGKAKVVRQSASDQVTVIGACVTLAEAMKAADELAGSGVNIRIIDPFTIKPLDAD 1712
Query: 577 GIINNAKECNNTILTVEDHYIEGGIHEAVCNAVASLGSIKVHAIAVDSVPRSGTPEDLLN 636
II+NA+ + I+TVEDHY+EGGI EAVC+AV+ I V +AV +PRSG +LL
Sbjct: 1713TIISNARATSGRIITVEDHYMEGGIGEAVCSAVSECKDITVRRLAVKEIPRSGKCGELLE 1892
Query: 637 HYKLTAPHVVEKVKSIL 653
Y ++A +V+ V+ +L
Sbjct: 1893RYGISAACIVKAVQQVL 1943
>13605
Length = 1546
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 520 FHLGQSKVHGKTDSDKILIIGGGITFESAMKAQKTLAA 557
F GQ GK K+L+IGGG+ SA+ K + A
Sbjct: 1138 FFTGQITAAGKVPPAKVLVIGGGVAGLSAVGTAKNMGA 1025
>18628
Length = 846
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 269 IIIAKTLKGKGLPNIEDQENWHGKPVGNKIDDLIKHLEEQLVDKNRKLT 317
+I+ TL G +P Q NW P ++ D HLE Q V KN LT
Sbjct: 434 LIMPSTLDGTMMPLNVAQYNWSESPPAKELKDTQIHLELQ-VPKNDLLT 577
>07982
Length = 901
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 296 NKIDDLIKHLEEQLVDK---NRKLTTIPPENAEEITLHSDAIKLPELSYKKGQQVATRFA 352
NKI DL +++ LVDK + +T I P+ +E + A +P ++ + + + F
Sbjct: 386 NKIIDLWQYVNRSLVDKVPDSGTVTAILPQQGKEAEVLEQARNIPHVTAYRKENIPDHFH 207
Query: 353 Y 353
Y
Sbjct: 206 Y 204
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00191800__3697.m00252aconitate_hydratase
(898 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09035 716 0.0
14868 62 9e-10
>09035
Length = 1950
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/602 (57%), Positives = 445/602 (73%), Gaps = 1/602 (0%)
Frame = +3
Query: 294 LADRATVANMAPEYGATTGFFPVDEQTIAFLRQTGRSEETIKNVEAYYKAQGLFRVYDGT 353
+ADRAT++NM PEYGATT FFPVD+Q++A+LRQTGR EE IK +E Y +A LFR Y+
Sbjct: 3 IADRATISNMCPEYGATTSFFPVDQQSLAYLRQTGRDEEKIKMIEQYLQATMLFRDYNDP 182
Query: 354 QQDPVYSGEVLKLDLATVVPSLAGPKRPMDRVALSDLQKEFSEGLSKPVTFKTFGVPADK 413
QDP++S +V++LDL++VVP +GPK P D+V +SD++ +F L+ V K + +P DK
Sbjct: 183 SQDPLFS-QVVELDLSSVVPCCSGPKLPHDKVPVSDMKTDFQACLNNKVGRKGYAIPEDK 359
Query: 414 VDLEVKYNLNGEEFTFRHGQVLIAAITSCTNTSNPGVMLAAGLLAKNAVQKGLKVPAYVK 473
V G+EFT HG V+IAAITSCTNTSNP VML AGLLAK AV+ GL V Y+K
Sbjct: 360 QRTVVPMVYEGKEFTLSHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVRPYIK 539
Query: 474 TSLSPGSQVVTKYYEKAGVTDFMNTLGFTHAGYGCMTCIGNSGDFVDPVLNQVVKDNDFV 533
TSLSPGS VVT Y +GVT+++ LGF GYGCMTCIGNSG D V + K D V
Sbjct: 540 TSLSPGSGVVTYYLRDSGVTEYLEKLGFDIVGYGCMTCIGNSGPLPDEVAAAIEK-GDLV 716
Query: 534 AAAVLSGNRNFEGRVHPQTRANYLASPPLVVAYALAGNVNFNFETQPLGKDQNGNDVFLR 593
A VLSGNRNFEGR+HP TRANYLASPPLV+AYALAG VN +FET+PLG + G VFLR
Sbjct: 717 ACGVLSGNRNFEGRIHPLTRANYLASPPLVIAYALAGTVNIDFETEPLGTNAEGKPVFLR 896
Query: 594 DIWPSREEVEALAAKIITPEMFTENYSRIAKGTDRWNSLQVKQGIQYEWKEESTYIHNPP 653
DIWPSR E++A+ + + P MF + YSRI+KG RWN L+V Y W E+STYI NPP
Sbjct: 897 DIWPSRAEIQAVEKQSVVPTMFNDVYSRISKGNSRWNGLEVPDSELYTWDEKSTYIKNPP 1076
Query: 654 FFNCQL-ELTPVKSIENAYCLGNFGDSITTDHISPAGNIAKDSPAGKYLLERGVPQKDFN 712
FF+ EL P++S+ +AY L N GDS+TTDHISPAG+IA++S A +YL ++G+ ++FN
Sbjct: 1077FFDGMTQELPPLRSVSDAYALLNLGDSVTTDHISPAGSIARNSAAARYLSKQGLVPREFN 1256
Query: 713 SYGARRGNDEVMARGTFANVRLVNKLLGGKVGPNTVHIPTGEVLSIFDAANRYIQAGIPT 772
SYG+RRG+D+VMA GTFAN+RLVNK L K GP TVHIP+G+ + ++D A RY + G
Sbjct: 1257SYGSRRGHDDVMACGTFANIRLVNKFL-SKPGPRTVHIPSGQEMDVYDVALRYKEEGRTV 1433
Query: 773 VIFGGKEYGTGSSRDWAAKGPFLQGVKVVIAQSYERIHRSNLIGMGILPLEFKEGESADT 832
VI GKEYG+GSSRDWAAKGP++ GV+ VIA+SYERIHRSNL+GMGILPL++ +SA++
Sbjct: 1434VILAGKEYGSGSSRDWAAKGPWILGVRAVIAESYERIHRSNLVGMGILPLQYLPDQSAES 1613
Query: 833 LGLTGKERYTIDLQEGNLKVNQXXXXXXXXGRTFTTKCRLDTDVEVQYFKHGGILLYVLR 892
LGLTGKE +++ + + +L Q G +F K R DT+VE+ YF+HGGIL Y++R
Sbjct: 1614LGLTGKETFSVHVPD-DLSTGQILEVKVSEGGSFQVKARFDTEVELTYFRHGGILNYMVR 1790
Query: 893 KL 894
++
Sbjct: 1791RM 1796
>14868
Length = 751
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 2/273 (0%)
Frame = +1
Query: 311 TGFFPVDEQTIAFLRQTGRSEETIKNVEAYYKAQGLFRVYDGTQQDPVYSGEVLKLDLAT 370
T FP + + +L+ T R++ I ++ YK L Q D +V+++DL
Sbjct: 1 TSVFPFNYRMQDYLKATXRAD--IADLANSYK--NLLSADPNAQYD-----QVIEIDLDK 153
Query: 371 VVPSLAGPKRPMDRVALSDLQKEFSEGLSKPVTFKTFGVPADKVDLEVKYNLNGEEFTFR 430
+ P + GP F+ L+ P++ G A K NG R
Sbjct: 154 LEPHVNGP---------------FTPDLAHPIS--KLGETAKK---------NGWPMDIR 255
Query: 431 HGQVLIAAITSCTNTSNPGVMLAAGLLAKNAVQKGLKVPAYVKTSLSPGSQVVTKYYEKA 490
+ I SCTN+S + + + A+ A+ GL + +++PGS+ + E+
Sbjct: 256 -----VGLIGSCTNSSYEDMGRSVSI-AQQALDHGLTSKSAF--TVTPGSEQIRATIERD 411
Query: 491 GVTDFMNTLGFTHAGYGCMTCIGNSGDFVDPVLNQVVKDNDFVAAAVLSGNRNFEGR--V 548
G+ + +G C CIG Q VK + V S NRNF GR
Sbjct: 412 GMAQTLRDIGGVVLANACGPCIGQWD-------RQDVKKGE-KNTIVTSYNRNFTGRNDA 567
Query: 549 HPQTRANYLASPPLVVAYALAGNVNFNFETQPL 581
+P T A ++ SP LV A ++AG+++FN ET L
Sbjct: 568 NPATHA-FVTSPELVTALSIAGDLSFNPETDEL 663
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|32330708|gb|AAP79896.1|_actin_[Tetrahymena_thermophila]
(376 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04742 619 e-178
39562 501 e-142
02757 224 2e-97
12322 243 7e-65
00608 196 1e-50
01436 149 2e-36
11487 88 6e-36
19721 94 3e-32
36954 117 7e-27
32273 115 3e-26
18926 108 3e-24
13361 101 6e-22
17032 34 0.080
08060 29 3.1
>04742
Length = 2111
Score = 619 bits (1596), Expect = e-178, Method: Compositional matrix adjust.
Identities = 282/376 (75%), Positives = 329/376 (87%)
Frame = +2
Query: 1 MAESESPAIVIDNGSGMCKAGIAGDDAPRAAFPSIVGRPKMPGIMVGMDQKECYVGEEAQ 60
M + + A+VIDNGSGMCKAG AGDDAPRA FPSIVGRP+ G+MVGM QK+ YVG+EAQ
Sbjct: 92 MCDEDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 271
Query: 61 AKRGVLNLKYPIEHGIVTDYDDMEKIWHHCFYNELRVTPEEHPCLLTEAPQNPKLNREKM 120
+KRG+L LKYPIEHGIVT++DDMEKIWHH FYNELRV PEEHP LLTEAP NPK NREKM
Sbjct: 272 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 451
Query: 121 TKTMFETFNVPSFYVAIQAVLSLYASGRTTGIVVDSGDGVTHTVPIYEGYALPHAILRID 180
T+ MFETFN P+ YVAIQAVLSLYASGRTTGIV+DSGDGV HTVPIYEGYALPHAI R+D
Sbjct: 452 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVXHTVPIYEGYALPHAISRLD 631
Query: 181 LAGRDLTEYCMKLLYEIGLNFSSTAEREIIRDIKEKLCYVAIDYEAELKAYKESSQNDKS 240
LAGRDLT+Y MK+L E G +F++TAEREI+RDIKEKLCYVA+D+E E++ SS +KS
Sbjct: 632 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKS 811
Query: 241 YELPDGNTITVQDQRFRCPELLFKPAFIGKEFPGIHELTFNSIMKCDVDVRKDLYNNIVL 300
YELPDG IT+ ++RFRCPE +F+P+F+G E G HE T+NSIMKCDVD+RKDLY N VL
Sbjct: 812 YELPDGQVITIGNERFRCPEAMFQPSFLGMESAGXHETTYNSIMKCDVDIRKDLYANTVL 991
Query: 301 SGGTTMFPGIAERLSKEVSALAPSSMKIKVVAPPERRYSVWIGGSILSSLSTFQTMWITK 360
SGG+TM+PGIA+R+ KE++ALAP +MKIK++APPER+YSVWIGGSIL+SLSTFQ MWI+K
Sbjct: 992 SGGSTMYPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 1171
Query: 361 AEYDESGPSIVHRKCF 376
EYDESGPSIVHRKCF
Sbjct: 1172QEYDESGPSIVHRKCF 1219
>39562
Length = 1438
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 228/301 (75%), Positives = 266/301 (88%)
Frame = -2
Query: 76 IVTDYDDMEKIWHHCFYNELRVTPEEHPCLLTEAPQNPKLNREKMTKTMFETFNVPSFYV 135
IVT++DDMEKIWHH FYNELRV PEEHP LLTEAP NPK NREKMT+ MFETFN P+ YV
Sbjct: 1437 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYV 1258
Query: 136 AIQAVLSLYASGRTTGIVVDSGDGVTHTVPIYEGYALPHAILRIDLAGRDLTEYCMKLLY 195
AIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI+R+DLAGRDLT+Y MK+L
Sbjct: 1257 AIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILT 1078
Query: 196 EIGLNFSSTAEREIIRDIKEKLCYVAIDYEAELKAYKESSQNDKSYELPDGNTITVQDQR 255
E G +F++TAEREI+RDIKEKL YVA+D+E E+ SS +KSYELPDG IT+ ++R
Sbjct: 1077 ERGYSFTTTAEREIVRDIKEKLDYVALDFEQEMLTAASSSSLEKSYELPDGQVITIGNER 898
Query: 256 FRCPELLFKPAFIGKEFPGIHELTFNSIMKCDVDVRKDLYNNIVLSGGTTMFPGIAERLS 315
FRCPE +F+P+F+G E GIHE T+NSIMKCDVD+RKDLY N VLSGG+TM+PGIA+R+
Sbjct: 897 FRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQ 718
Query: 316 KEVSALAPSSMKIKVVAPPERRYSVWIGGSILSSLSTFQTMWITKAEYDESGPSIVHRKC 375
KE++ALAP +MKIK++APPER+YSVWIGGSIL+SLSTFQ MWI+K EYDESGPSIVHRKC
Sbjct: 717 KEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 538
Query: 376 F 376
F
Sbjct: 537 F 535
>02757
Length = 1094
Score = 224 bits (571), Expect(3) = 2e-97, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 126/151 (83%)
Frame = -2
Query: 173 PHAILRIDLAGRDLTEYCMKLLYEIGLNFSSTAEREIIRDIKEKLCYVAIDYEAELKAYK 232
P AILR+DLAGRDLT+Y MK+L E G +F++TAEREI+ DIKEKLCYVA+D+E E+
Sbjct: 997 PTAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVXDIKEKLCYVALDFEQEMATAA 818
Query: 233 ESSQNDKSYELPDGNTITVQDQRFRCPELLFKPAFIGKEFPGIHELTFNSIMKCDVDVRK 292
SS +KSYELPDG IT+ ++RFRCPE LF+P+F+G E GIHE T+NSIMKCDVD+RK
Sbjct: 817 SSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIMKCDVDIRK 638
Query: 293 DLYNNIVLSGGTTMFPGIAERLSKEVSALAP 323
DLY N VLSGGTTMFPGIA+R+ KE++ALAP
Sbjct: 637 DLYANTVLSGGTTMFPGIADRMQKEITALAP 545
Score = 100 bits (250), Expect(3) = 2e-97, Method: Compositional matrix adjust.
Identities = 45/53 (84%), Positives = 50/53 (94%)
Frame = -3
Query: 324 SSMKIKVVAPPERRYSVWIGGSILSSLSTFQTMWITKAEYDESGPSIVHRKCF 376
S+MKIK +APPER+YSVWIGGSIL+SLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct: 543 STMKIKXIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 385
Score = 70.9 bits (172), Expect(3) = 2e-97, Method: Compositional matrix adjust.
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = -1
Query: 141 LSLYASGRTTGIVVDSGDGVTHTVPIYEGYALPH 174
LSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPH
Sbjct: 1094 LSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 993
>12322
Length = 849
Score = 243 bits (621), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 155/218 (71%), Gaps = 1/218 (0%)
Frame = +1
Query: 160 VTHTVPIYEGYALPHAILRIDLAGRDLTEYCMKLLYEIGLNFSSTAEREIIRDIKEKLCY 219
VTH VP+YEG+A+PH+I+R+D+AGRD+T Y LL + G++ +TAE E+++ IKE+ CY
Sbjct: 1 VTHAVPVYEGFAMPHSIMRVDVAGRDVTRYLRLLLRKEGMDLHTTAEFEVVKHIKERTCY 180
Query: 220 VAIDYEAELKAYKESSQNDK-SYELPDGNTITVQDQRFRCPELLFKPAFIGKEFPGIHEL 278
++I+ E ES +K SY LPDGNT+ V RFR PELLF+P IG+E GIHE+
Sbjct: 181 LSINPLKE-----ESVDTEKVSYTLPDGNTVEVGPARFRAPELLFRPDLIGEECEGIHEV 345
Query: 279 TFNSIMKCDVDVRKDLYNNIVLSGGTTMFPGIAERLSKEVSALAPSSMKIKVVAPPERRY 338
SI K DVD+RK LY+NIVLSGG+T+F G +RL E+ LAP +KI++ AP ER Y
Sbjct: 346 LSYSIQKSDVDLRKTLYSNIVLSGGSTLFKGFGDRLLSELKKLAPKDIKIRISAPQERLY 525
Query: 339 SVWIGGSILSSLSTFQTMWITKAEYDESGPSIVHRKCF 376
S WIG SIL+SL TF+ MW++K EY E G +HRK F
Sbjct: 526 STWIGXSILASLDTFRKMWVSKREYHEEGVKAIHRKTF 639
>00608
Length = 1930
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 177/328 (53%), Gaps = 33/328 (10%)
Frame = +3
Query: 76 IVTDYDDMEKIWHHCFYNELRVTPEEHPCLLTEAPQNPKLNREKMTKTMFETFNVPSFYV 135
I+ D+D ME+ + + LR PE+H LLTE P N NRE + MFE+FNVP Y+
Sbjct: 3 IIDDWDLMERFYEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYI 182
Query: 136 AIQAVLSLYASGRT--------TGIVVDSGDGVTHTVPIYEGYALPHAILRIDLAGRDLT 187
A+QAVL+L AS + TG V+DSGDGVTH +P+ EGY + I I +AGRD+T
Sbjct: 183 AVQAVLALAASWTSRNVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 362
Query: 188 EYCMKLLYEIGLNFSSTAEREIIRDIKEKLCYVAIDYEAELKAYK-ESSQNDKSYELPDG 246
+ +LL E + E + IKE+ YV D E Y + S+ K YE
Sbjct: 363 YFIQQLLREREVGIPPEQSLETAKAIKERFSYVCPDIAKEFSKYDTDPSKWMKKYE--GR 536
Query: 247 NTITVQ-------DQRFRCPELLFKPAFIGKEFP-GIHELTFNSIMKCDVDVRKDLYNNI 298
NTI+ Q +RF PE+ F P F +F I ++ + I C +DVR+ LY NI
Sbjct: 537 NTISKQLFSVDVGYERFLGPEIFFHPEFSNPDFTMPISDVVDDVIQNCPIDVRRGLYKNI 716
Query: 299 VLSGGTTMFPGIAERLSKEVS----------------ALAPSSMKIKVVAPPERRYSVWI 342
VLSGG+TMF ++ ++V + P ++++V+ +RY+VW
Sbjct: 717 VLSGGSTMFRDFGRKIQRDVKRVVDGRLKASEELSQGRIKPKPIEVQVITHHMQRYAVWF 896
Query: 343 GGSILSSLSTFQTMWITKAEYDESGPSI 370
GGS+L+S F + TKA+YDE GPSI
Sbjct: 897 GGSMLASTPEFYQVCHTKADYDEHGPSI 980
>01436
Length = 2563
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 12/200 (6%)
Frame = +3
Query: 186 LTEYCMKLLYEIGLNFSSTAEREIIRDIKEKLCYVAIDYEAELKAYKESSQNDKSYELPD 245
+T Y +KLL G F+ +A+ E +R +KEKLCY A D E E K E++ + Y LPD
Sbjct: 3 ITRYLIKLLLLRGYAFNHSADFETVRMLKEKLCYTAYDVEQEQKLALETTVLVEPYILPD 182
Query: 246 GNTITVQDQRFRCPELLFKPAFIGKEFPGIHELTFNSIMKCDVDVRKDLYNNIVLSGGTT 305
G I V +RF PE LF+P I + G+ EL FN+I D+D+R D Y +IVLSGG+T
Sbjct: 183 GRVIKVGGERFEAPEALFQPHLINVDGVGVAELLFNTIQAADMDIRPDFYKHIVLSGGST 362
Query: 306 MFPGIAERLSKEVSAL-----------APSSMKIKVVAPPERRYSVWIGGSILSS-LSTF 353
M+PG+ RL +E+ L S KI++ PP R++ V++GGS+ + +
Sbjct: 363 MYPGLPSRLEREIKQLYLERVLXGDTSRLSKFKIRIEDPPRRKHMVFLGGSVXADIMKDK 542
Query: 354 QTMWITKAEYDESGPSIVHR 373
W+ ++EY+E G ++ +
Sbjct: 543 DDFWMMRSEYEEMGVKVLDK 602
>11487
Length = 771
Score = 88.2 bits (217), Expect(3) = 6e-36, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -2
Query: 334 PERRYSVWIGGSILSSLSTFQTMWITKAEYDESGPSIVHRKCF 376
PER+YSVWIGGSIL+SLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct: 602 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 474
Score = 73.6 bits (179), Expect(3) = 6e-36, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = -1
Query: 277 ELTFNSIMKCDVDVRKDLYNNIVLSGGTTMFPGIAERLSKE 317
E +NSIMKCDVD+RKDLY N VLSGGTTMFPGIA+R+ KE
Sbjct: 771 ETAYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKE 649
Score = 27.3 bits (59), Expect(3) = 6e-36, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = -3
Query: 315 SKEVSALAPSSMKIKVVAP 333
++ ++ALAP +MKIK++AP
Sbjct: 658 AERITALAPPTMKIKIIAP 602
>19721
Length = 757
Score = 94.4 bits (233), Expect(2) = 3e-32, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 8/120 (6%)
Frame = +2
Query: 76 IVTDYDDMEKIWHHCFYNELRVTPEEHPCLLTEAPQNPKLNREKMTKTMFETFNVPSFYV 135
+V D+D E+ + LR PE+H LLTE P N NRE + MFETFN+P Y+
Sbjct: 2 VVEDWDLHERFMEQAIFKYLRAEPEDHYFLLTEPPLNTPENREFTAEIMFETFNIPGLYI 181
Query: 136 AIQAVLSLYASGRT--------TGIVVDSGDGVTHTVPIYEGYALPHAILRIDLAGRDLT 187
A+QAVL+L AS + TG V+DSGDGVTH +P+ +GY + AI I +AGRD+T
Sbjct: 182 AVQAVLALAASWTSRPPNERTLTGTVIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDIT 361
Score = 62.0 bits (149), Expect(2) = 3e-32, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
Frame = +3
Query: 208 EIIRDIKEKLCYVAID-------YEAELKAYKESSQNDKSYELPDGNTITVQDQRFRCPE 260
E + IKE+ YV D Y+++ + + ++ + S + PD + V ++F PE
Sbjct: 420 EAAKQIKERYSYVCPDIAKEFAKYDSDPEKWIKAHKMSGSSKYPD-FSFDVGYEKFLGPE 596
Query: 261 LLFKPAFIGKEFPG-IHELTFNSIMKCDVDVRKDLYNNIVLSGGTTMF 307
+ F+P F+ +F I ++ I C +D R+ LYNNIVLSGG++MF
Sbjct: 597 VFFRPEFVNGDFQASISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMF 740
>36954
Length = 892
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 112/203 (55%), Gaps = 11/203 (5%)
Frame = -1
Query: 5 ESPAIVIDNGSGMCKAGIAGDDAPRAAFPSIVGRPKMPGIMVGMDQ---------KECYV 55
E A+V D GS +AG AG+D P+A P+ VG M I MD ++ Y+
Sbjct: 814 EVGALVFDIGSYSFRAGYAGEDTPKAEIPTHVGV--MEDIETTMDTDGGDAPPQPEKKYL 641
Query: 56 GEEAQAK--RGVLNLKYPIEHGIVTDYDDMEKIWHHCFYNELRVTPEEHPCLLTEAPQNP 113
+ K R ++L ++ G+V D+D EK+ + + ++ HP L++E N
Sbjct: 640 IDTVYMKHPRKGMHLNSFLKDGMVEDWDMFEKVIDYAYNRSIKSESCLHPLLMSEPAWNT 461
Query: 114 KLNREKMTKTMFETFNVPSFYVAIQAVLSLYASGRTTGIVVDSGDGVTHTVPIYEGYALP 173
K REK+T+ MFE +N+P+F++ +VLS +A+GR+T +++DSG T VP+Y+GY L
Sbjct: 460 KAKREKLTEIMFEKYNIPAFFLRKNSVLSAFANGRSTALILDSGATHTSAVPVYDGYVLT 281
Query: 174 HAILRIDLAGRDLTEYCMKLLYE 196
I++ LAG + C L+ E
Sbjct: 280 QGIVKSPLAGDFIARECGLLMEE 212
>32273
Length = 265
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Frame = -2
Query: 65 VLNLKYPIEHGIVTDYDDMEKIWHHCFY-NELRVTPEEHPCLLTEAPQNPKLNREKMTKT 123
+++++YP+EHGIV D++DME+IW + + ++L+ EEHP LLTEAP NP+ NREK +
Sbjct: 264 LMSIRYPMEHGIVKDWNDMERIWQYIYSKDQLQTFSEEHPVLLTEAPLNPRRNREKAAEI 85
Query: 124 MFETFNVPSFYVAIQAVLSLYASGRTTG 151
F+TFNVP+ ++++QAVLSLYA+GR TG
Sbjct: 84 FFDTFNVPALFISMQAVLSLYATGRITG 1
>18926
Length = 478
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 3/105 (2%)
Frame = +1
Query: 274 GIHELTFNSIMKCDVDVRKDLYNNIVLSGGTTMFPGIAERLSKEVSALAPSSMKIKVVAP 333
G+ + S+ CD+D+R LY ++ GG ++ G ERL++++S P SM++K++A
Sbjct: 97 GVGHVVTTSVGMCDIDIRPSLYGGVIAVGGNSLIQGFTERLNRDLSNKTPPSMRLKIIAA 276
Query: 334 P---ERRYSVWIGGSILSSLSTFQTMWITKAEYDESGPSIVHRKC 375
ERR+S WIGGSIL+SL +FQ MW++K EY+E G S V RKC
Sbjct: 277 ASTAERRFSSWIGGSILASLGSFQQMWVSKQEYEEGGKSCVERKC 411
>13361
Length = 1217
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 25/178 (14%)
Frame = +3
Query: 218 CYVAIDYEAELKAY-KESSQNDKSYELPDGNTITVQD-------QRFRCPELLFKPAFIG 269
CY+ D E Y E S+ ++Y NT+T Q +RF PE+ F P F
Sbjct: 42 CYICPDIAKEFAKYDSEPSKWIRNYT--GMNTVTKQAFNVDVGYERFLGPEIFFHPEFSN 215
Query: 270 KEFP-GIHELTFNSIMKCDVDVRKDLYNNIVLSGGTTMFPGIAERLSKEVS--------- 319
+F + E+ N I C +DVR+ LYNNIVLSGG+TMF RL +++
Sbjct: 216 PDFTIPLSEIVDNVIQNCPIDVRRHLYNNIVLSGGSTMFKDFGRRLQRDIKRSVDTRLRI 395
Query: 320 -------ALAPSSMKIKVVAPPERRYSVWIGGSILSSLSTFQTMWITKAEYDESGPSI 370
+ P + ++V+ +RY+VW GGS+L+S F + TKA Y+E GPSI
Sbjct: 396 SENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKAAYEEYGPSI 569
>17032
Length = 2938
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -1
Query: 342 IGGSILSSLSTFQTMWITKAEYDESGPSI 370
GGS+L+S F + TKA+YDE GPSI
Sbjct: 2938 FGGSMLASTPEFYQVCHTKADYDEHGPSI 2852
>08060
Length = 1880
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 41 MPGIMVGMDQKECYVGEEAQAKRGVLNLKYPIEHGIVTD 79
+PGI+VGM Q V RG L K P+ +TD
Sbjct: 1635 LPGILVGMSQVPTNVPHGDSRLRGTLGSKAPLLFA*ITD 1751
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|118378497|ref|XP_001022424.1|_Tubulin/FtsZ_family_[Tetrahymena_ther
mophila]
(449 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00276 618 e-177
12457 397 e-115
06360 303 6e-83
03702 240 8e-64
17215 236 2e-62
16482 207 6e-54
13181 194 6e-50
04882 181 5e-46
05902 137 7e-33
25015 111 7e-25
28905 98 8e-21
39157 93 2e-19
31457 91 9e-19
19746 33 0.16
27940 32 0.66
>00276
Length = 1330
Score = 618 bits (1593), Expect = e-177, Method: Compositional matrix adjust.
Identities = 291/353 (82%), Positives = 317/353 (89%)
Frame = -3
Query: 80 TGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFN 139
TGTYRQL PEQL++GKEDAANN+ARGHYTIGKE+VDL LDRIRKLAD CTGLQGFL+F+
Sbjct: 1328 TGTYRQL-SPEQLVTGKEDAANNYARGHYTIGKELVDLVLDRIRKLADQCTGLQGFLIFH 1152
Query: 140 XXXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTD 199
VDYGKKSKL F IYP+PQVSTAVVEPYNSIL+TH+ LEH+D
Sbjct: 1151 SFGGGTGSGFTSLXMERLSVDYGKKSKLEFXIYPAPQVSTAVVEPYNSILTTHTTLEHSD 972
Query: 200 VAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNL 259
A M+DNEAIYDICRRNLDIERPTYTNLNRLI Q++SS+TASLRFDGALNVD+TEFQTNL
Sbjct: 971 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIXQIVSSITASLRFDGALNVDLTEFQTNL 792
Query: 260 VPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMY 319
VPYPRIHF L++YAP+ISAEKAYHEQL VAEITN+ FEPAN + KCDPRHGKYMAC M+Y
Sbjct: 791 VPYPRIHFPLATYAPVISAEKAYHEQLXVAEITNACFEPANQLVKCDPRHGKYMACCMLY 612
Query: 320 RGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMIS 379
RGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV RAVCM+S
Sbjct: 611 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 432
Query: 380 NSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
N+TAIAE ++RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 431 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 273
>12457
Length = 781
Score = 397 bits (1021), Expect(2) = e-115, Method: Compositional matrix adjust.
Identities = 186/239 (77%), Positives = 207/239 (86%)
Frame = -1
Query: 67 FLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLA 126
+DLEPTV+DEVRTGTYRQLFHPEQL++GKEDAANN+ARGHYTIGKEIVDL LDRIRKLA
Sbjct: 718 LVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTIGKEIVDLVLDRIRKLA 539
Query: 127 DNCTGLQGFLVFNXXXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTAVVEPYN 186
D CTGLQGFL+F+ VDYGKKSKL F IYP+PQVSTAVVEPYN
Sbjct: 538 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 359
Query: 187 SILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDG 246
SIL+TH+ LEH+D A M+DNEAIYDICRRNLDIERPTYTNLNRLI Q++SS+TASLRFDG
Sbjct: 358 SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 179
Query: 247 ALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKC 305
ALNVD+TEFQTNLVPYPRIHF L++YAP+ISAEKAYHEQL+VAEITN+ FEPAN M KC
Sbjct: 178 ALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKC 2
Score = 37.0 bits (84), Expect(2) = e-115, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = -2
Query: 45 GDDAFNTFFSETGAGKHVPRAVFLDLEP 72
GDD+F T SETGAGKHVPRAV P
Sbjct: 780 GDDSF-TPLSETGAGKHVPRAVSSXXSP 700
>06360
Length = 1896
Score = 303 bits (777), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 140/178 (78%), Positives = 153/178 (85%)
Frame = -1
Query: 1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGK 60
MRE IS+HVGQ G+Q+GNACWEL+CLEHGIQPDGQMPSDKTIGGGDD+FNTFFSETGAGK
Sbjct: 1710 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 1531
Query: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQL++GKEDAANN+ARGHYTIGKEIVDL LD
Sbjct: 1530 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTIGKEIVDLVLD 1351
Query: 121 RIRKLADNCTGLQGFLVFNXXXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVS 178
RIRKLAD CTGLQGFL+F+ VDYGKKSKL F IYP+PQVS
Sbjct: 1350 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVS 1177
>03702
Length = 1932
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 115/150 (76%), Positives = 131/150 (87%), Gaps = 1/150 (0%)
Frame = +1
Query: 159 VDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLD 218
VDYGKKSKL F IYP+PQVSTAVVEPYNSIL+TH+ LEH+D A M+DNEAIYDICRRNLD
Sbjct: 1471 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 1650
Query: 219 IERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSY-APIIS 277
IERP YTNLNRLI Q++SS+TASLRFDGALNVD+TEFQTNLVP P H + + P+IS
Sbjct: 1651 IERPXYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPTP--HPLPPGHLCPVIS 1824
Query: 278 AEKAYHEQLSVAEITNSAFEPANMMAKCDP 307
AEKAYHEQL+VAE+TN+ FEPAN + KCDP
Sbjct: 1825 AEKAYHEQLTVAEVTNACFEPANQLVKCDP 1914
>17215
Length = 632
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 108/116 (93%), Positives = 114/116 (98%)
Frame = +3
Query: 317 MMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVC 376
M+YRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV RAVC
Sbjct: 3 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 182
Query: 377 MISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
M+SN+TAIAE ++RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 183 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 350
>16482
Length = 837
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 146/248 (58%)
Frame = +1
Query: 1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGK 60
MRE++ + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 100 MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGK 273
Query: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
+VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 274 YVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 453
Query: 121 RIRKLADNCTGLQGFLVFNXXXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
+RK A++C LQGF + + +Y + F++ PSP+VS
Sbjct: 454 VVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 633
Query: 181 VVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240
VVEPYN+ LS H L+E+TD +DNEA+YDIC R L + PTY +LN L++ +S +T
Sbjct: 634 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 813
Query: 241 SLRFDGAL 248
LRF G L
Sbjct: 814 CLRFPGQL 837
>13181
Length = 1092
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 132/223 (59%)
Frame = -3
Query: 210 YDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFML 269
YDIC R L + PTY +LN L++ +S +T LRF G LN D+ + N+VP+PR+HF +
Sbjct: 1090 YDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFM 911
Query: 270 SSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVN 329
+AP+ S + L+V E+T F+ NMMA CDPRHG+Y+ + M+RG + K+V+
Sbjct: 910 PGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVD 731
Query: 330 ASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFS 389
+ ++ K + FV+W P K + PP + + + NSTAI E+F
Sbjct: 730 EQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFVGNSTAIQELFK 575
Query: 390 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y
Sbjct: 574 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 446
>04882
Length = 1136
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 126/214 (58%)
Frame = +2
Query: 219 IERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISA 278
+ PTY +LN L++ +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S
Sbjct: 314 VHTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR 493
Query: 279 EKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTK 338
+ L+V E+T F+ NMMA CDPRHG+Y+ + ++RG + K+V+ + ++ K
Sbjct: 494 GSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNK 673
Query: 339 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLM 398
+ FV+W P K + PP + + I NSTAI E+F R+ +F M
Sbjct: 674 NSSYFVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAM 829
Query: 399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
+ ++AF+HWY GEGM+E EF+EA ++ L +Y
Sbjct: 830 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 931
>05902
Length = 1127
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 157/281 (55%), Gaps = 9/281 (3%)
Frame = +2
Query: 161 YGKKSKLGFTIYPS-PQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDI 219
+ KK ++++P+ ++S VV+PYNS+L+ L ++ D V+LDN A+ I L I
Sbjct: 89 FPKKLIQTYSVFPNVDEISDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIAADRLHI 268
Query: 220 ERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIIS-A 278
+ PT+ +N+L++ V+S+ T +LR+ G +N D+ +L+P PR+HF+++ Y P+ + +
Sbjct: 269 DTPTFAQVNQLVSTVMSTSTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDS 448
Query: 279 EKAYHEQLSVAEITNSAFEPANMMAKCDPRHGK----YMACSMMYRGDVVPKDVNASIAT 334
+ A + +V ++ +P NMM P H + Y++ + +G+V P V+ S+
Sbjct: 449 QVANVRKTTVLDVMRRLLQPKNMMVST-PVHRQANHCYISILNIIQGEVDPTQVHKSLQR 625
Query: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHK 394
I+ ++ QF+ W P +V ++ + P V ++ + M++N T+I+ +F R+ +
Sbjct: 626 IRERKLAQFIPWGPASIQVALSRKSPYVQTAHRVSGL-----MLANHTSISHLFERILRQ 790
Query: 395 FDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDY 432
+D + + AF+ + E + + EF +RE L L +Y
Sbjct: 791 YDKLRKREAFMDQFKKEAIFKDNLDEFDNSREALQLLVDEY 913
>25015
Length = 458
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 73/115 (63%)
Frame = -3
Query: 21 WELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRT 80
WE+ EHGI P G D + + N +++E GK+VPRAV +DLEP +D VR+
Sbjct: 360 WEVISDEHGIDPTGTYHGDSDLQ--LERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRS 187
Query: 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGF 135
G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK A++C LQGF
Sbjct: 186 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 22
>28905
Length = 425
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
Frame = -1
Query: 258 NLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSM 317
N+VP+PR+HF + +AP+ S + L+V E+T F+ NMMA CDPRHG+Y+ +
Sbjct: 380 NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 201
Query: 318 MYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCM 377
M+RG + K+V+ + ++ K + FV+W P K + PP G ++
Sbjct: 200 MFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR---GLKMSGT-----F 45
Query: 378 ISNSTAI-AEVFSR 390
I NSTAI +F R
Sbjct: 44 IGNSTAIQGRLFKR 3
>39157
Length = 488
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Frame = -1
Query: 1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGK 60
MRE++ + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 443 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQ--LERINVYYNEATGGK 270
Query: 61 HVPRAVFLDLEPTVIDEVRTGT--YRQLFHPEQLISGKEDAANNFARGHYTI-GKEIVDL 117
+VPRAV +DLEP +D VR+G+ ++F P+ + G+ A NN+ + T G E+VD
Sbjct: 269 YVPRAVLVDLEPGTMDSVRSGSPFGPKIFRPDNFVFGQSGAGNNWGQKDTTQRGAELVDS 90
Query: 118 CLDRIRK 124
LD +RK
Sbjct: 89 VLDVVRK 69
>31457
Length = 1530
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%)
Frame = +3
Query: 311 KYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 370
KY+ + M+RG + K+V+ + ++ K + FV+W P K + PP +
Sbjct: 234 KYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLK------ 395
Query: 371 VMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
+ I NSTAI E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 396 --MSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 569
Query: 431 DY 432
+Y
Sbjct: 570 EY 575
>19746
Length = 446
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 373 RAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
++ ++SNS + + K M+A RA++H YV G+ E +F +A
Sbjct: 133 KSATLVSNSRSSTRPLDDIMEKAWKMFASRAYIHQYVKRGLSEEDFLDA 279
>27940
Length = 364
Score = 31.6 bits (70), Expect = 0.66, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 343 FVDWC--PTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYA 400
FV WC P+ F VG + P D +++ + + E+F L +K+ LMY
Sbjct: 29 FVFWCTCPSIFTVGSKKDV*RITPSCDYHLIIKIIV-----DRLVEIF--LSNKYHLMYC 187
Query: 401 KRAFVHWY 408
+ AFV Y
Sbjct: 188 QYAFVQVY 211
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00655820__96.m00145translation_elongation_factor_EF-1,
_subunit_alpha
(435 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
15991 495 e-177
00709 377 e-105
22349 152 4e-37
16686 69 4e-12
15617 49 4e-06
31464 33 0.15
04430 29 4.7
>15991
Length = 1629
Score = 495 bits (1274), Expect(3) = e-177, Method: Compositional matrix adjust.
Identities = 237/334 (70%), Positives = 274/334 (82%), Gaps = 10/334 (2%)
Frame = -3
Query: 45 KESAEAGKGSFKYAWVLDKLKAERERGITIDISLWKFETAKYHFTIIDAPGHRDFIKNMI 104
+E+AE GKGSFKYAWVLDKLKAERERGITIDI+LWKFET KY+ TIIDAPGHRDFIKNMI
Sbjct: 1546 EEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETDKYYVTIIDAPGHRDFIKNMI 1367
Query: 105 TGTSQADVAILMIASPQGEFEAGISKDGQTREHALLSFTLGVKQMIVCLNKMDEKTVNFS 164
TGTSQAD A+L++A+ +GEFEAGISKDGQTREHALL++TLGVKQ+IV +NKMD +S
Sbjct: 1366 TGTSQADCAVLVVAAGKGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDSTEPPYS 1187
Query: 165 EERYTEIKKELSDYLKKVGYKPETIPFIPISGFNGDNMLERSTNC--PW--------YKG 214
+R+ EIKKE+S Y+KK+GY P T+ F+PISG+ GDNM+E ST W +G
Sbjct: 1186 MDRFEEIKKEVSTYIKKIGYNPNTVAFVPISGWVGDNMMEASTKIVHKWKIERKEGKAEG 1007
Query: 215 PILIEALDALEPPKRPIDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMSIQFAPNKV 274
L EALDA+ PP RP DK LRLPLQDVYKIGGIGTVPVGRVETG++KPG + FAP +
Sbjct: 1006 ETLKEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVTFAPGGL 827
Query: 275 IAECKSVEMHHEQLQEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVI 334
E KSVEMHHEQLQEA+PGDNVGFN+K VSVKDIRRGNVA D+KNDP K A FY+QVI
Sbjct: 826 TTEVKSVEMHHEQLQEALPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPKGAKNFYAQVI 647
Query: 335 IMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKI 368
I+NHPG I AGY PVLDCHTAHIACKFE + ++
Sbjct: 646 ILNHPGMIHAGYAPVLDCHTAHIACKFEELEREV 545
Score = 110 bits (275), Expect(3) = e-177, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 60/69 (86%)
Frame = -1
Query: 364 IHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKPLCVEVFQEYPPLGRYAVRDMKQTVA 423
+ +K D R+GK E+NPK +K+GDAA+VTL+P+KP+CVE F +YPPLGR+AVRDMKQTVA
Sbjct: 558 LKEKCDXRSGKKLEDNPKCVKSGDAAMVTLVPSKPMCVEAFVDYPPLGRFAVRDMKQTVA 379
Query: 424 VGVIKKVEK 432
VGVIK VEK
Sbjct: 378 VGVIKSVEK 352
Score = 56.6 bits (135), Expect(3) = e-177, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = -2
Query: 18 DSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEAGKG 53
DSGKSTTTGHLIYKCGGIDKRVIEK + S G+G
Sbjct: 1625 DSGKSTTTGHLIYKCGGIDKRVIEKL-RRSCRDGQG 1521
>00709
Length = 1076
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/258 (69%), Positives = 210/258 (81%), Gaps = 16/258 (6%)
Frame = -2
Query: 5 DKVHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEAGKGSFKYAWVLDKL 64
+KVHIN+VVIGHVDSGKSTTTGHLIYKCGGIDKR IEKFEKE+ E GKGSFKYAWVLDKL
Sbjct: 898 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 719
Query: 65 KAERERGITIDISLWKFETAKYHFTIIDAPGHRDFIKNMITGTSQADVAILMIASPQGEF 124
KAERERGITIDI+LWKFET KY+ TIIDAPGHRDFIKNMITGTSQAD A+L++AS GEF
Sbjct: 718 KAERERGITIDIALWKFETTKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVASGTGEF 539
Query: 125 EAGISKDGQTREHALLSFTLGVKQMIVCLNKMDEKTVNFSEERYTEIKKELSDYLKKVGY 184
EAGISK+GQTREHALL++TLGVKQ+I+ +NKMD + +SE R+ EI+KE+S Y+KK+G+
Sbjct: 538 EAGISKEGQTREHALLAYTLGVKQLIIGVNKMDSTSPAYSETRFNEIQKEVSGYIKKIGF 359
Query: 185 KPETIPFIPISGFNGDNMLERSTNCPWYK----------------GPILIEALDALEPPK 228
P+ + F+PISGF+GDNM+ S WYK G L +ALD++ PP
Sbjct: 358 NPKAVAFVPISGFHGDNMIXESEKMGWYKGWEIERKEGTKEVKASGKTLFDALDSILPPT 179
Query: 229 RPIDKPLRLPLQDVYKIG 246
RP KPLRLPLQDVYKIG
Sbjct: 178 RPTGKPLRLPLQDVYKIG 125
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = -3
Query: 226 PPKRPIDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMSIQFAPN 272
PP P+ P + ++ GIGTVPVGRVETG++KPGM + FAP
Sbjct: 186 PPLVPLASLCVCPCRMSTRLEGIGTVPVGRVETGILKPGMVVTFAPQ 46
>22349
Length = 662
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 109/159 (68%), Gaps = 1/159 (0%)
Frame = -2
Query: 6 KVHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEAGKGSFKYAWVLDKLK 65
K HIN+V IGHVD+GKST GHL+Y G +DKR +EK+E+E+ E + ++ +W LD
Sbjct: 499 KDHINVVFIGHVDAGKSTIGGHLLYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNN 320
Query: 66 AERERGITIDISLWKFETAKYHFTIIDAPGHRDFIKNMITGTSQADVAILMIASPQGEF- 124
ERE+G T+++ FET HFT++DAPGH+ F+ NMI G SQAD+AIL+I++ +GEF
Sbjct: 319 EEREKGKTVEVGRAFFETELKHFTVLDAPGHKSFVPNMICGASQADLAILVISARRGEF* 140
Query: 125 EAGISKDGQTREHALLSFTLGVKQMIVCLNKMDEKTVNF 163
+ +S++ + GV+ +IV +NKMD+ TVN+
Sbjct: 139 DWFLSEEARHVSMPCW*RRQGVRHLIVLINKMDDPTVNW 23
>16686
Length = 689
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 79/160 (49%)
Frame = -2
Query: 271 PNKVIAECKSVEMHHEQLQEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFY 330
P +A K+V + Q A GD+V F++ + + + G V D + P K A
Sbjct: 670 PAGNMAGVKNVTVDDLSSQLAFAGDHVTFSLTNIDMTSVNVGFVLCDPMS-PTKCAIRIR 494
Query: 331 SQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAAL 390
++V++ N I G+ V + F+ + I++ TG + PK + +A+
Sbjct: 493 AKVVLFNLDLPITRGFPVVFHXQCVNEPAVFKRLVATINKSTGDIVKNRPKCLTKNSSAI 314
Query: 391 VTLIPTKPLCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKV 430
V L + +CVE++ EY LGR+ +R+ T+A G+I+++
Sbjct: 313 VELEFERSVCVELYSEYRDLGRFMLRNSGHTIAAGMIEEI 194
>15617
Length = 595
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Frame = -3
Query: 10 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEAGKGSFKYAWVLDKLKAERE 69
N+ VI HVD GKST T L+ K G I SA+AG+ F D K E+E
Sbjct: 428 NMSVIAHVDHGKSTLTDSLVSKAGII----------ASAKAGETRFT-----DTRKDEQE 294
Query: 70 RGITID---ISLW---KFETAKY------------HFTIIDAPGHRDFIKNMITGTSQAD 111
R ITI ISL+ K + KY +ID+PGH DF + D
Sbjct: 293 RCITIKSTAISLYYELKKDDMKYIKQDYDQDNNAFLINLIDSPGHVDFSSEVTAALRVTD 114
Query: 112 VAILMIASPQG 122
A++++ G
Sbjct: 113 GALVVVDCVSG 81
>31464
Length = 946
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = +1
Query: 227 PKRPIDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMSIQFAPNKVIAECKSVEMHHE 286
P+R D P + + + GTV G +G + +++ KV + KS++M
Sbjct: 259 PRRNPDGPFIFSVDHCFSLRXQGTVLTGTAISGSVAVNDTVEIPAMKVQKKVKSMQMFRN 438
Query: 287 QLQEAVPGDNVGFNIKGVSVKDIRRGNVA 315
+ V GD G + K + RG V
Sbjct: 439 PVDRLVQGDRAGICVTQFDPKLLERGLVC 525
>04430
Length = 2037
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -2
Query: 247 GIGTVPVGRVETG 259
GIGTVPVGRVETG
Sbjct: 2027 GIGTVPVGRVETG 1989
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00571860__3810.m02075ATP_synthase_F1,
_alpha_subunit_family_protein
(546 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
37643 585 e-167
00880 333 8e-92
00590 71 1e-12
16215 57 2e-08
06642 30 2.7
00216 29 3.7
35964 29 4.6
>37643
Length = 1463
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/381 (73%), Positives = 322/381 (84%)
Frame = -3
Query: 161 EIKAPGIIPRQSVRQPMQTGIKCVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKEA 220
E+KAPGIIPR SV++PMQTGIK VDSLVPIGRGQRELIIGDRQTGKTA+A+DTI+NQK
Sbjct: 1437 EVKAPGIIPRTSVKEPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAVAVDTIINQKRL 1258
Query: 221 FNTGDVKKQLYCIYVAVGQKRSTIANLVSILKQHDCMKFTIVVCATASDAAPLQFLAPYS 280
+ + K++LYCIYVA+GQKRST+A LV L D MK+TIVV ATASDAAPLQ+LAPYS
Sbjct: 1257 NDGNNEKQKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYS 1078
Query: 281 GCAIGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA 340
GCA+GEFFRDNG HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA
Sbjct: 1077 GCAMGEFFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA 898
Query: 341 AKMNDSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGL 400
AKMND GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGL
Sbjct: 897 AKMNDDNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGL 718
Query: 401 SVSRVGSAAQIKAMKKIAGNLKLTLATYRELAAFSQFGSDLDAKTQQQLNTGERLVEMLK 460
SVSRVG+AAQ +AMK++AG++KL LA YRE+AAF+QFGSDLD TQ LN G RL E+LK
Sbjct: 717 SVSRVGAAAQTRAMKQVAGSMKLELAQYREVAAFAQFGSDLDQATQNLLNRGVRLTELLK 538
Query: 461 QNQYTPMKVEEQVCIIFAGVKGFLDALVTSEVLKFEKKFLEHVRTNHSALLKRIRDSGDL 520
Q QY PM +EEQV +IFAGV+G LD + S+++ FE +FL+H++++ LL I G +
Sbjct: 537 QGQYVPMAIEEQVAVIFAGVRGHLDKMDPSKIVAFESEFLKHLQSSQQELLSTISTEGKI 358
Query: 521 SEVDTNELNTIIPLFIQEGGF 541
SE +L ++ F+ GF
Sbjct: 357 SEATEEKLKQVVTSFL--AGF 301
>00880
Length = 2381
Score = 333 bits (855), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 174/282 (61%), Positives = 209/282 (74%), Gaps = 10/282 (3%)
Frame = -1
Query: 3 RNFHSLVKRVPRLAL--------TPFFGFRTSMTLADKKLSTG--EASVVLAEKIKGITQ 52
R +LV+++PR A F R T + G E S +L ++I G
Sbjct: 2327 RLAXTLVRQLPRAAPQICKNAIGAGFVAARHIQTSPQSYAAAGGAEVSSILEDRILGQAP 2148
Query: 53 QNDITEYGTVISIGDGIARVFGLTKVQAGEMVEFKSGIRGMALNLETDNVGVVVLGNDRD 112
Q ++ E G V+SIGDGIARV+GL +QA EMVEF SG++GMALNLE DNVGVVV GND+
Sbjct: 2147 QANLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKL 1968
Query: 113 IKEGDVVKRTGAIVDVPIGEAMCGRVFDALGNPIDGLGPLKTTQRARVEIKAPGIIPRQS 172
IKEGD+VKRTGAIVDVP+G+ + GRV DALGNPIDG GP+ +R RV +KAPGIIPR S
Sbjct: 1967 IKEGDIVKRTGAIVDVPVGKDLLGRVVDALGNPIDGKGPVGGGERQRVGVKAPGIIPRTS 1788
Query: 173 VRQPMQTGIKCVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKEAFNTGDVKKQLYC 232
V++PMQTGIK VDSLVPIGRGQRELIIGDRQTGKTA+A+DTI+NQK + + K++LYC
Sbjct: 1787 VKEPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAVAVDTIINQKRLNDGNNEKQKLYC 1608
Query: 233 IYVAVGQKRSTIANLVSILKQHDCMKFTIVVCATASDAAPLQ 274
IYVA+GQKRST+A LV L D MK+TIVV ATASDAAPLQ
Sbjct: 1607 IYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ 1482
>00590
Length = 2486
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 69/124 (55%)
Frame = +1
Query: 293 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSLGGGSL 352
KH L+I D+S A A R++S PGR +PG ++ + + ERA ++ GS+
Sbjct: 343 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSI 516
Query: 353 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQIK 412
T +P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A +
Sbjct: 517 TQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE 696
Query: 413 AMKK 416
M +
Sbjct: 697 GMTR 708
>16215
Length = 1251
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 12/180 (6%)
Frame = -3
Query: 176 PMQTGIKCVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKEAFNTGDVKKQLYCIYV 235
P+ TG + +DSL P +G I G GKT I+ ++ DV IYV
Sbjct: 694 PLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVIS-----QSLSKYSNSDV-----IIYV 545
Query: 236 AVGQKRSTIANLVSIL---------KQHDCMKFTIVVCATASDAAPLQFLAPYSGCAIGE 286
G++ + ++ ++ K MK T +V T++ + + Y+G + E
Sbjct: 544 GCGERGNEMSEVLRDFPELTMEVEGKPESIMKRTALVANTSNMPVAAREASIYTGITLSE 365
Query: 287 FFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL---LERAAKM 343
+FRD G + ++ D S+ A A R++S L P YP YL +RL ERA ++
Sbjct: 364 YFRDMGLNVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLASFYERAGRV 194
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 116 GDVVKRTGAIVDVPIGEAMCGRVFDALGNPID 147
GD V RTG + V +G + G +FD + P++
Sbjct: 1144 GDPVLRTGKPLSVQLGPGIMGSIFDGIQRPLE 1049
>06642
Length = 1029
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 492 VLKFEKKFLEHVRTNHSALLKRIRDSG 518
+L F+K F H TNH L++ I+DS
Sbjct: 183 ILTFDKIFFSHTGTNHQKLVQLIQDSA 103
>00216
Length = 1371
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 47 IKGITQQNDITEYGTVISIGDGIARV 72
I+G+T ND+ Y +VIS G+ I V
Sbjct: 615 IRGLTAANDLRAYASVISTGESIMYV 692
>35964
Length = 863
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 47 IKGITQQNDITEYGTVISIGDGIARV 72
I+G+T ND+ Y +VIS G+ I V
Sbjct: 312 IRGLTAANDLRAYASVISTGESIMYV 389
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00339640__3689.m00136V-type_ATPase,_A_subunit_family_protein
(617 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
16215 503 e-165
00590 87 2e-17
04005 87 2e-17
37977 86 3e-17
37643 64 2e-10
00095 61 1e-09
23393 32 0.80
06491 30 2.5
03406 28 8.5
28554 28 8.6
>16215
Length = 1251
Score = 503 bits (1296), Expect(2) = e-165, Method: Compositional matrix adjust.
Identities = 240/336 (71%), Positives = 277/336 (82%)
Frame = -3
Query: 64 IQCYEDTYGLTVGDPVMRTKEPLSVELGPGILNGIFDGIQRPLGSIAQVSGSAFIPRGVD 123
+Q YE+T G+TVGDPV+RT +PLSV+LGPGI+ IFDGIQRPL +I ++ S +IP+G++
Sbjct: 1180 VQVYEETSGVTVGDPVLRTGKPLSVQLGPGIMGSIFDGIQRPLETICDLTQSIYIPKGIN 1001
Query: 124 VPILDGDKQWHFIPRPDIKVGSKLTGGDIFGHCHENNLFCKHNIMLPPKGKGHVTYIAPE 183
P LD KQW FIP DI+VGS +TGGDI+G EN L KH IMLPP+ +G VTYIAP
Sbjct: 1000 TPALDDHKQWEFIPSKDIRVGSHITGGDIYGMVPENILI-KHRIMLPPRARGTVTYIAPP 824
Query: 184 GQYTIHEKVLELEIDGKKTSYKMSHFWPVRQARPVLERLQGNVPLLTGQRVLDALFPSVL 243
G YT+++ VLE E DG+K+ Y M WPVRQ RPV E+L N PLLTGQRVLD+LFP V
Sbjct: 823 GNYTVNDIVLETEFDGQKSQYSMLQVWPVRQMRPVSEKLAANYPLLTGQRVLDSLFPCVQ 644
Query: 244 GGTCAIPGAFGCGKTCISQALSKYSNSEVIVYVGCGERGNEMAEVLTDFPELKTEINGKK 303
GGT AIPGAFGCGKT ISQ+LSKYSNS+VI+YVGCGERGNEM+EVL DFPEL E+ GK
Sbjct: 643 GGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVEGKP 464
Query: 304 ESIMQRTCLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREIS 363
ESIM+RT LVANTSNMPVAAREASIYTGITL+EYFRDMG NVSMMADSTSRWAEALREIS
Sbjct: 463 ESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGLNVSMMADSTSRWAEALREIS 284
Query: 364 GRLAQMPAEQGYPAYLANKLAFFYERAGRVKCQGSP 399
GRLA+MPA+ GYPAYL +LA FYERAGRV C G+P
Sbjct: 283 GRLAEMPADSGYPAYLGARLASFYERAGRVICLGNP 176
Score = 98.2 bits (243), Expect(2) = e-165, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 48/51 (94%)
Frame = -2
Query: 397 GSPNREGSITIVGAVSPPGGDFTDPVTVSTLAIVQVFWGLDKKLAQRKHFP 447
G P+REGS++IVGAVSPPGGDF+DPVT +TL IVQVFWGLDKKLAQRKHFP
Sbjct: 185 GQPHREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 33
>00590
Length = 2486
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 127/289 (43%), Gaps = 4/289 (1%)
Frame = +1
Query: 244 GGTCAIPGAFGCGKTCISQALSKYSNSEVIVYVGCGERGNEMAEVLTDFPELKTEINGKK 303
GG +PG L + ++ IV+ G DF E NG
Sbjct: 97 GGLVKLPG---------KSVLDDHDDNFAIVFAAMGVNMEIARFFKQDFEE-----NGSM 234
Query: 304 ESIMQRTCLVANTSNMPVAAREASIYTGITLAEYFRDMGY----NVSMMADSTSRWAEAL 359
E++ CL N +N P R + +T AEY M Y +V ++ S +AEAL
Sbjct: 235 ENV----CLFLNLANDPTIERIITPRIALTTAEY---MAYQCEKHVLVILTDMSSYAEAL 393
Query: 360 REISGRLAQMPAEQGYPAYLANKLAFFYERAGRVKCQGSPNREGSITIVGAVSPPGGDFT 419
RE+S ++P +G+P Y+ LA YERAGRV+ R GSIT + ++ P D T
Sbjct: 394 REVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTMPNDDIT 558
Query: 420 DPVTVSTLAIVQVFWGLDKKLAQRKHFPSVDWNKSTSNYERQLDPYFNNFDPDFSNLRTS 479
P+ T I + +D++L R+ +P ++ S S + + D S++
Sbjct: 559 HPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRE-DHSDVSNQ 735
Query: 480 IKKILQEENELNEIVQLVGKDSLSEDQKLTLEVARVIREDFLQQNAFSD 528
+ ++ + +VG+++L+ + L LE ++F+ Q + +
Sbjct: 736 LYACYAIGKDVQAMKAVVGEEALTPEDLLYLEFLTKFEKNFISQGHYEN 882
>04005
Length = 913
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%)
Frame = +1
Query: 342 GYNVSMMADSTSRWAEALREISGRLAQMPAEQGYPAYLANKLAFFYERAGRVKCQGSPNR 401
G +V + D+ R+ +A E+S L ++P+ GY LA + ER + +
Sbjct: 4 GQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-------TTTK 162
Query: 402 EGSITIVGAVSPPGGDFTDPVTVSTLAIVQVFWGLDKKLAQRKHFPSVDWNKSTSNYERQ 461
+GSIT V A+ P D TDP +T A + L + +A+ +P+VD STS R
Sbjct: 163 KGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTS---RI 333
Query: 462 LDPYFNNFDPDFSNLRTSIKKILQEENELNEIVQLVGKDSLSEDQKLTLEVARVIREDFL 521
LDP N + +++KILQ+ L +I+ ++G D LSE+ KLT+ AR ++ FL
Sbjct: 334 LDP--NIVGEHHYKIARAVQKILQDFKSLQDIIAILGMDELSEEDKLTVSRARKMQR-FL 504
Query: 522 QQ 523
Q
Sbjct: 505 SQ 510
>37977
Length = 510
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +1
Query: 499 KDSLSEDQKLTLEVARVIREDFLQQNAFSDYDYMCPLEKTIGMMRGIFTYYDNARRTIVE 558
K SL+E K+TLEVA++I++D+LQQN ++ YD CP KT+GM+R I +YD +R +
Sbjct: 4 KGSLAESDKITLEVAKLIKDDYLQQNGYTPYDRFCPFYKTVGMLRNIIAFYDMSRHAVES 183
Query: 559 SS-GETKINWNEILFQTKPLFLQLTDMKRLDPKK 591
++ E KI W+ I Q + +L+ MK DP K
Sbjct: 184 TAQSENKITWSIIREQLSDVLYKLSSMKFKDPVK 285
>37643
Length = 1463
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 120/262 (45%), Gaps = 15/262 (5%)
Frame = -3
Query: 210 WPVRQARPVLERLQGNVPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTC------ISQA 263
W V+ A ++ R P+ TG + +D+L P G I G GKT I+Q
Sbjct: 1440 WEVK-APGIIPRTSVKEPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAVAVDTIINQK 1264
Query: 264 LSKYSNSE----VIVYVGCGERGNEMAEVLTDFPELKTEINGKKESIMQRTCLVANTSNM 319
N+E +YV G++ + +A+++ + M+ T +V+ T++
Sbjct: 1263 RLNDGNNEKQKLYCIYVAIGQKRSTVAQLVKRLTDADA---------MKYTIVVSATASD 1111
Query: 320 PVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAQMPAEQGYPA-- 377
+ + Y+G + E+FRD G + ++ D S+ A A R++S L + P + YP
Sbjct: 1110 AAPLQYLAPYSGCAMGEFFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDV 931
Query: 378 -YLANKLAFFYERAGRVKCQGSPNREGSITIVGAVSPPGGDFTDPVTVSTLAIV--QVFW 434
YL ++L ERA ++ N GS+T + + GD + + + ++I Q+F
Sbjct: 930 FYLHSRL---LERAAKMN---DDNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIF- 772
Query: 435 GLDKKLAQRKHFPSVDWNKSTS 456
L+ +L + P+++ S S
Sbjct: 771 -LETELFYKGIRPAINVGLSVS 709
>00095
Length = 572
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 1/128 (0%)
Frame = -2
Query: 338 FRDM-GYNVSMMADSTSRWAEALREISGRLAQMPAEQGYPAYLANKLAFFYERAGRVKCQ 396
FRD G +V + D+ R+ +A E+S L ++P+ GY LA + ER
Sbjct: 385 FRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI------ 224
Query: 397 GSPNREGSITIVGAVSPPGGDFTDPVTVSTLAIVQVFWGLDKKLAQRKHFPSVDWNKSTS 456
+ +GSIT V A+ P D TDP +T A + L + +A+ +P+VD STS
Sbjct: 223 -TTTNKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTS 47
Query: 457 NYERQLDP 464
R LDP
Sbjct: 46 ---RILDP 32
>23393
Length = 741
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 527 SDYDYMCPLEKTIGMMRGIFTYYDNARRTIVESSGETKINWNEILFQT 574
S Y Y K R I+ +Y ++ +IV SSG+ + W +IL++T
Sbjct: 410 SKYIYTKQSYKLHNFFRNIY-HYAHSDHSIVHSSGDVLLGWYKILYKT 270
>06491
Length = 1083
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 541 MMRGIFTYYDNARRTIVESSGETKINWNEILFQTKPL--FLQLTDMK 585
R I+ +Y ++ +IV SSG+ + W IL++T + F + +D K
Sbjct: 394 FFRNIY-HYAHSDHSIVHSSGDVLLGWYXILYKTGFVSNFFKJSDFK 531
>03406
Length = 1292
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +3
Query: 586 RLDPKKPKQEVNQYFSKY--VEDVNLAFRKINDR 617
+LDP P+++V YF+K+ V +V L + K+ D+
Sbjct: 504 KLDPGVPQEDVESYFAKFGKVVNVELPYDKVKDQ 605
>28554
Length = 341
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 426 TLAIVQVFWGLDKKLAQRKHFPSVDWNKSTSNYERQLDPYFNNFDPDFSN 475
TL +V++ KKL QRK FP W K+ + + +L P F N D + N
Sbjct: 170 TLLSRKVYYKGYKKLLQRKIFP---WEKNHAKIKPEL-PEFENIDNENEN 33
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00794110__134.m00090dehydrogenase,
_isocitrate/isopropylmalate_family_protein
(463 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01970 567 e-162
23955 112 3e-25
>01970
Length = 2861
Score = 567 bits (1462), Expect = e-162, Method: Compositional matrix adjust.
Identities = 269/406 (66%), Positives = 327/406 (80%), Gaps = 2/406 (0%)
Frame = -1
Query: 55 VTNPVTELDGDEMTRVIWQLIKDKLILPYLDLNIKYFDLGMEYRDQTDDKVTLDAAQSIV 114
V NPV ELDGDEMTR+IW+ IKD+LI PYLD++ KY+DLG+ YRDQT+D+VT+D+A++I
Sbjct: 2861 VDNPVVELDGDEMTRIIWEKIKDRLIFPYLDVDCKYYDLGLPYRDQTNDQVTIDSAEAIK 2682
Query: 115 ETKVGIKCATITPDEARVKEFNLKKMWKSPNGTIRNHIGGTVFREPILMKNVPRLVPAWT 174
+ VGIKCATITPDE RV+EF LKKMW SPNGTIRN +GGTVFREPI+ + +PRLVP WT
Sbjct: 2681 KYNVGIKCATITPDEERVEEFKLKKMWLSPNGTIRNILGGTVFREPIICQTIPRLVPGWT 2502
Query: 175 KPIVIGRHAFGDQYRATDFKVEEAGTFEIVFTPKNGGEKKVMKVFDYP-AGGVGMGMYNT 233
+ IVIGRHA GDQY+ATD +E GT E+VFTP+ GG+ +V KVFD+ GGVGM MYNT
Sbjct: 2501 QAIVIGRHAHGDQYKATDLVLEGNGTLELVFTPE-GGKPQVTKVFDFKXGGGVGMAMYNT 2325
Query: 234 DESITEFAHSSFKYALDRKMPLYLSTKNTILKAYDGKFKDIFQAIYDKQYKEEFTKAGIW 293
DESI +FAH+SF+YAL + PLY+STKNTILK YDG+FKDIFQ I+DK+YK +F K GIW
Sbjct: 2324 DESIRDFAHASFQYALMKSWPLYMSTKNTILKRYDGRFKDIFQEIFDKEYKPKFDKQGIW 2145
Query: 294 YEHRLIDDMVAYMMKSEGGFMWACKNYDGDVQSDCLAQGFGSLGLMTSVLVGPN-DIIEA 352
YEHRLIDDMVA +KS GGF+WACKNYDGDVQSD +AQG+GSLGLMTSVLV P+ IEA
Sbjct: 2144 YEHRLIDDMVAQALKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTIEA 1965
Query: 353 EAAHGTVTRHFRQHQKGQETSTNSIASIFAWTQGLLHRAKLDNNKELDLFCKTLESSVIE 412
EAAHGTVTRH+R+HQKG TSTN IASIFAWT+GL HR KLD NK+L F + +E + ++
Sbjct: 1964 EAAHGTVTRHYREHQKGNPTSTNPIASIFAWTRGLEHRGKLDGNKDLQRFAQVMEKACVD 1785
Query: 413 TVETGFMTKDLAICIQGSNDVPRSKYLTTQEFIDKVAETLRKNLVA 458
V++G MTKDLA CI G +V YL T +F++ + E + A
Sbjct: 1784 CVDSGKMTKDLAGCIYGLKNVTPEHYLNTMDFLEAIGEEFERQWKA 1647
>23955
Length = 699
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%)
Frame = +1
Query: 358 TVTRHFRQHQKGQETSTNSIASIFAWTQGLLHRAKLDNNKELDLFCKTLESSVIETVETG 417
TVTRH+R+HQKG TSTN IASIFAWT+GL HR KLD NK+L F + +E + ++ V++G
Sbjct: 1 TVTRHYREHQKGNPTSTNPIASIFAWTRGLEHRGKLDGNKDLQRFAQVMEKACVDCVDSG 180
Query: 418 FMTKDLAICIQGSNDVPRSKYLTTQEFIDKVAETLRK 454
MTKDLA CI G +V YL T +F++ + E +
Sbjct: 181 KMTKDLAGCIYGLKNVTPEHYLNTMDFLEAIGEEFER 291
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01014750__3748.m00315dnaK_protein
(640 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
21024 377 e-157
30255 216 3e-56
26390 182 2e-46
37715 114 1e-39
27378 103 2e-22
24750 93 4e-19
31218 77 3e-14
20979 55 1e-07
03996 53 3e-07
12271 53 4e-07
09881 49 5e-06
29861 35 0.11
16480 32 0.92
18844 30 3.3
>21024
Length = 3220
Score = 377 bits (969), Expect(2) = e-157, Method: Compositional matrix adjust.
Identities = 187/347 (53%), Positives = 243/347 (70%)
Frame = +1
Query: 273 EKAKCELSSTNTTEINLPYLTADASGPKHCNLQITRAKFESLCGDFLKKTIKPCEICLKD 332
+K+K ELSS+ T+INLPYLT DASGPKH NL+++R+KFESL +K+T+ PC+ L+D
Sbjct: 1027 QKSKIELSSSLQTDINLPYLTMDASGPKHMNLKLSRSKFESLVESLVKRTVGPCQKALQD 1206
Query: 333 SGISKDKIDEVILVGGSTRIPMVQKLVADFFGKTPNKSVNPDEXXXXXXXXXXXXLEGTV 392
+ + K I EVILVGG +R+P VQ V D FG+TP+KSVNPDE L G V
Sbjct: 1207 AEVKKSDIGEVILVGGMSRMPKVQSTVQDLFGRTPSKSVNPDEAVAIGAAIQGGVLAGDV 1386
Query: 393 KDVILLDVTPLTLGIETYGGVMTKMIERNTTIPTRKSQVFSTAGDNQTVVSIRVFQGERP 452
DV+LLDVTPL+LGIET GGV TK+I RNTTIPT+KSQVFSTA D QT V I+V QGER
Sbjct: 1387 TDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVHQGERE 1566
Query: 453 MVKDNKLLGNFDLADIPPAPKGVPQIEVTFDIDQSGIVHVTAKDKGTGKQQNVVIQSSGG 512
M DNKLLG F L IPPAP+GVPQ+EVTFDID +GIV+V+A+DKGTGK+Q +VIQSSGG
Sbjct: 1567 MANDNKLLGQFTLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDKGTGKEQQIVIQSSGG 1746
Query: 513 LSKSQIEDMIREAEAHKEEDNKRRELVDLKNEGDKVYHNTEKSLQTHKSKLPSXXXXXXX 572
LSK +IE+MI+ AEAH E+D +++ELV++ N+ D + H+TE ++ K +LP
Sbjct: 1747 LSKDEIENMIKNAEAHAEDDRRKKELVEVLNQADSIIHDTESKMEEFKDQLPQEECDKLR 1926
Query: 573 XXXXXXXTSLDNSNLGSEDVEKLKTQIQNVNNAAQKIGEAIYKNSGA 619
L N + +E EK++ + ++ + K+ E YK A
Sbjct: 1927 EKINEVKQLLANKD--NEAPEKIREETSDLQQKSLKLFEMAYKKMAA 2061
Score = 195 bits (495), Expect(2) = e-157, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 138/209 (66%), Gaps = 2/209 (0%)
Frame = +3
Query: 68 KAVTNPENTLYATKRLIGRKFEDPMVQKDAKHLSYKVVRNSNGDAWVAAQGKNYSPSQVG 127
+AVTN ENTL ATKRLIGR+FEDP VQKD K++SYK+V+ SNGDAWV AQGK YSPSQVG
Sbjct: 411 QAVTNAENTLSATKRLIGRRFEDPEVQKDMKNVSYKIVKASNGDAWVEAQGKMYSPSQVG 590
Query: 128 SFVLTKMKETAEAYLGKNVKQAVVTVPAYFNDQQRQATTDAGKISGLEVKRIINEPTAAA 187
+FVL KMKETAE+YLG V AVVTVPAYFND QRQAT DAG+ISGL+ ++ T +
Sbjct: 591 AFVLMKMKETAESYLGSKVNNAVVTVPAYFNDSQRQATKDAGQISGLKCV-ACDQRTHSC 767
Query: 188 LAYGMEKTGGKVVAVYDLGGGTFDISILELADGVFEVKATNGDTSCGGED--VDGMIAEY 245
+ M T K+ L ++ L +K+ + E+ D + +
Sbjct: 768 SSCFMAWTSLKIK**RCLI*AEGRLTSLSWRSRRECLKSNQPTETHSWEERTFDNYMVNF 947
Query: 246 IIKEFKSQSGIDIHSDKMAIQRVREAAEK 274
+ EFK + G+DI D MA+QR+REAAEK
Sbjct: 948 LASEFKKEQGLDITKDPMAVQRLREAAEK 1034
>30255
Length = 1761
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 145/207 (70%), Gaps = 6/207 (2%)
Frame = -1
Query: 336 SKDKIDEVILVGGSTRIPMVQKLVADFF-GKTPNKSVNPDEXXXXXXXXXXXXLEG---- 390
+K I E++LVGGSTRIP +QKL+ DFF GK KS+NPDE L G
Sbjct: 1647 TKPGIHEIVLVGGSTRIPKIQKLLQDFFNGKELCKSINPDEAVAYGACVQAAILHGDKSE 1468
Query: 391 TVKDVILLDVTPLTLGIETYGGVMTKMIERNTTIPTRKSQVFSTAGDNQTVVSIRVFQGE 450
V+D++LLDV PL++GIET GGVMT +I+RNTTIPT+++Q F+T DNQ V I+V++GE
Sbjct: 1467 EVQDLLLLDVAPLSMGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 1288
Query: 451 RPMVKDNKLLGNFDLADIPPAPKGVPQIEVTFDIDQSGIVHVTAKDKGTGKQQNVVIQSS 510
R M +DN LLG F+L IPPAP+GVPQIEVTFDID +GI++V+A DK TGK+ + I +
Sbjct: 1287 RAMTRDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAADKSTGKENKITITND 1108
Query: 511 GG-LSKSQIEDMIREAEAHKEEDNKRR 536
G LSK +IE M+ +AE + RR
Sbjct: 1107 KGRLSKEEIERMVNDAEKSRTMMTSRR 1027
>26390
Length = 665
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Frame = +2
Query: 394 DVILLDVTPLTLGIETYGGVMTKMIERNTTIPTRKSQVFSTAGDNQTVVSIRVFQGERPM 453
DV+++DV L+LGIET GGVMT +I R TTIP RK++VFSTA DNQ V+I+V++GER
Sbjct: 14 DVLVMDVNALSLGIETVGGVMTTLIARGTTIPARKAKVFSTAQDNQDSVTIQVYEGERSR 193
Query: 454 VKDNKLLGNFDLADIPPAPKGVPQIEVTFDIDQSGIVHVTAKDKGTGKQQNVVIQSSG-G 512
KDN LLG FDL IP AP+GVPQIEVTF +D +G++ V+A+DKGTG++ +++IQ SG G
Sbjct: 194 TKDNHLLGRFDLTGIPAAPRGVPQIEVTFQVDANGVMQVSAEDKGTGQKNDIIIQQSGSG 373
Query: 513 LSKSQIEDMIREAEAHKEEDNKRRELVDLKNEGDKVYHNTEKSLQ-THK 560
LS +E M++EA+ EED K REL + + + + + + LQ HK
Sbjct: 374 LSPEDVERMVQEAQDFAEEDRKFRELTESRTGLESLAYTAQHQLQDLHK 520
>37715
Length = 468
Score = 114 bits (286), Expect(2) = 1e-39, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 73/101 (72%), Gaps = 3/101 (2%)
Frame = -2
Query: 101 SYKVVRNSNG---DAWVAAQGKNYSPSQVGSFVLTKMKETAEAYLGKNVKQAVVTVPAYF 157
+ KV+ SN A V+ K ++P ++ + VL KM++ AEAYLGK + AVVTVPAYF
Sbjct: 461 TLKVINKSNKPHIQALVSGATKTFAPEEISAMVLGKMRDIAEAYLGKKIDNAVVTVPAYF 282
Query: 158 NDQQRQATTDAGKISGLEVKRIINEPTAAALAYGMEKTGGK 198
ND QRQAT DAG I+GL V RIINEPTAAA+AYG++K G+
Sbjct: 281 NDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRDGE 159
Score = 67.4 bits (163), Expect(2) = 1e-39, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = -1
Query: 200 VAVYDLGGGTFDISILELADGVFEVKATNGDTSCGGEDVDGMIAEYIIKEF 250
+ V+DLGGGTFD+S+L + +GVFEV ATNGDT GGED D + ++ IK +
Sbjct: 153 ILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMDHFIKLY 1
>27378
Length = 410
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Frame = -1
Query: 249 EFKSQSGIDIHSDKMAIQRVREAAEKAKCELSSTNTTEINLPYLTADASGPKH-CNLQIT 307
EFK + D+ S+ A++R+R AAE+AK LSS+ I + DA H +I+
Sbjct: 410 EFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEV-----DALFEGHDFYTKIS 246
Query: 308 RAKFESLCGDFLKKTIKPCEICLKDSGISKDKIDEVILVGGSTRIPMVQKLVADFF-GKT 366
RA+FE LC D ++T+ P E L D+ + K I +++LVGGSTRIP VQ L+ FF GK+
Sbjct: 245 RARFEELCADLFRQTLAPVEKALNDAKMDKQMIHDIVLVGGSTRIPKVQNLLQQFFGGKS 66
Query: 367 PNKSVNPDE 375
N S+NPDE
Sbjct: 65 LNLSINPDE 39
>24750
Length = 552
Score = 92.8 bits (229), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/69 (57%), Positives = 54/69 (78%)
Frame = +1
Query: 444 IRVFQGERPMVKDNKLLGNFDLADIPPAPKGVPQIEVTFDIDQSGIVHVTAKDKGTGKQQ 503
++V++GER M +DN LLG F+L IPPAP+GVPQIEVTFDID +GI++V+A DK TGK+
Sbjct: 157 LQVYEGERAMTRDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAADKSTGKEN 336
Query: 504 NVVIQSSGG 512
+ I + G
Sbjct: 337 KITITNDKG 363
>31218
Length = 322
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 68/110 (61%)
Frame = +2
Query: 230 DTSCGGEDVDGMIAEYIIKEFKSQSGIDIHSDKMAIQRVREAAEKAKCELSSTNTTEINL 289
DT GGED D + +Y++K K ++G D+ D A+ R+R +AEKAK LSS ++T+++L
Sbjct: 2 DTHLGGEDFDQRLVDYLVKLIKQKTGRDVRHDTRAMSRLRRSAEKAKRALSSQHSTKVDL 181
Query: 290 PYLTADASGPKHCNLQITRAKFESLCGDFLKKTIKPCEICLKDSGISKDK 339
+T+D + +L +TRAKFE L D + T+ + L+DSG + +
Sbjct: 182 DGVTSDLA-----DLTLTRAKFEELNTDLFRSTLTTVKRALEDSGKGRKR 316
>20979
Length = 976
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 305 QITRAKFESLCGDFLKKTIKPCEICLKDSGISKDKIDEVILVGGSTRIPMVQKLVADFFG 364
+++R + L D L + KP E LK S I+ +I E+IL+GG +R+P VQ+ + F G
Sbjct: 274 KVSREDYLELIKDLLARVTKPMEDALKVSEITMPEITEIILMGGGSRVPRVQEELLKFSG 453
Query: 365 KTP-NKSVNPDE 375
K+ KS+N DE
Sbjct: 454 KSDLGKSINTDE 489
>03996
Length = 1105
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Frame = -2
Query: 303 NLQITRAKFE----SLCGDFLKKTIKPCEICLKDSGISKDKIDEVILVGGSTRIPMVQKL 358
N +I FE L D L + KP E LK S I+ +I E+IL+GG +R+P VQ+
Sbjct: 1098 NAEIGNKDFELDVLELIKDLLARVTKPMEDALKVSEITMPEITEIILMGGGSRVPRVQEE 919
Query: 359 VADFFGKTP-NKSVNPDE 375
+ F GK+ KS+N DE
Sbjct: 918 LLKFSGKSDLGKSINTDE 865
>12271
Length = 1762
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 297 SGPKHCNLQITRAKFESLCGDFLKKTIKPCEICLKDSGISKDKIDEVILVGGSTRIPMVQ 356
+G + + ++TR K+ L D L + P + L S I+ +I E+IL+GG +R+P +
Sbjct: 29 AGREDFSCKVTRDKYLHLIQDLLDRVTLPVQQVLTASQITWAEITEIILMGGGSRLPKIH 208
Query: 357 KLVADFFGKTP-NKSVNPDE 375
+++ D+ GK KS+N DE
Sbjct: 209 EILLDYSGKKELGKSLNTDE 268
>09881
Length = 600
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +2
Query: 143 GKNVKQAVVTVPAYFNDQQRQATTDAGKISGLEVKRIINEPTAAALAYGMEKT 195
GK ++ AV+ VP+ F+D+QR A + A +G +V R+INE +AAALAY + +T
Sbjct: 2 GKGIQDAVLAVPSDFSDKQRAAASAAASKAGFKVLRLINECSAAALAYDLGQT 160
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 70 VTNPENTLYATKRLIGRKFEDPMVQKDAKHLSYKVVRNSN 109
V+N +NT+ KR++G FEDP+ Q+ KVV N
Sbjct: 348 VSNVKNTVCNVKRILGLTFEDPVTQEYLASSPVKVVNQKN 467
>29861
Length = 318
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 352 IPMVQKLVADFFGKTPNKSVNPD 374
IP V++L+ D+FGK PN +++P+
Sbjct: 3 IPKVRQLIGDYFGKAPNTAIDPE 71
>16480
Length = 596
Score = 31.6 bits (70), Expect = 0.92, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 53 AYKHLTYRIKQRWHNKAVTNPENTLYATKRLI 84
AYKHL Y + + H A +P N++Y +K LI
Sbjct: 51 AYKHLHYFLYKSNHAFAFLHPNNSMYTSKLLI 146
>18844
Length = 485
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 15/54 (27%)
Frame = +3
Query: 427 RKSQVFSTAGDNQTVVSI---------------RVFQGERPMVKDNKLLGNFDL 465
+KS +F+ A + ++ + R+F+ E+PM DNK LG++ L
Sbjct: 96 KKSTIFTDAKETTPLIDVKRIIEGIAKVAPENQRLFREEQPMTDDNKSLGDYGL 257
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00529860__3684.m00040V-type_ATPase,_B_subunit_family_protein
(497 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00590 525 e-149
37643 97 2e-20
04005 61 1e-09
16215 57 2e-08
00095 55 6e-08
00880 54 1e-07
>00590
Length = 2486
Score = 525 bits (1352), Expect = e-149, Method: Compositional matrix adjust.
Identities = 256/335 (76%), Positives = 285/335 (85%), Gaps = 2/335 (0%)
Frame = +1
Query: 158 DCMTSIARGQKIPLFSANGLPHNEIGAQIVRQASLVK--GKDVLDHSEENFAVVFGAMGV 215
D M SIARGQKIP+FSA GLPHNEI AQI RQ LVK GK VLD ++NFA+VF AMGV
Sbjct: 1 DTMNSIARGQKIPIFSAAGLPHNEIAAQICRQGGLVKLPGKSVLDDHDDNFAIVFAAMGV 180
Query: 216 NMEVARFFRQDFESNGSMEKVILFLNLANDPTIERIITPRLSLTAAEYLAYEREMHVLVI 275
NME+ARFF+QDFE NGSME V LFLNLANDPTIERIITPR++LT AEY+AY+ E HVLVI
Sbjct: 181 NMEIARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRIALTTAEYMAYQCEKHVLVI 360
Query: 276 LTDMSQYADSLREVSAAREEVPGRRSYPGYLYTDLSTIYERAGRVEGVNGSITQIPILTM 335
LTDMS YA++LREVSAAREEVPGRR +PGY+YTDL+TIYERAGRVEG NGSITQIPILTM
Sbjct: 361 LTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTM 540
Query: 336 PSDDITHPIPDLTGYITEGQIFIDRQLHNKQIYPPINVLPSLSRLMKSAIGIDDHGKVMT 395
P+DDITHPIPDLTGYITEGQI++DRQLHN+QIYPPINVLPSLSRLMKSAI G+ MT
Sbjct: 541 PNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAI-----GEGMT 705
Query: 396 RVDHPDVSNELYAAYAIGKDTAAMKAVVGEEALNEEDHLYLEFLKNFESKYISQGQYESR 455
R DH DVSN+LYA YAIGKD AMKAVVGEEAL ED LYLEFL FE +ISQG YE+R
Sbjct: 706 REDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPEDLLYLEFLTKFEKNFISQGHYENR 885
Query: 456 TIFQTLNKAWELLRIFPPEKLKKIKQSTKDLYYAK 490
TIF++L+ W+LLRIFP E LK+I QST YY +
Sbjct: 886 TIFESLDIGWQLLRIFPKEMLKRIPQSTLAKYYPR 990
>37643
Length = 1463
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 3/245 (1%)
Frame = -3
Query: 143 RVYPKEMIQTGISAIDCMTSIARGQKIPLFSANGLPHNEIGAQ-IVRQASLVKGKDVLDH 201
R KE +QTGI A+D + I RGQ+ + + I+ Q L G ++
Sbjct: 1410 RTSVKEPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAVAVDTIINQKRLNDG----NN 1243
Query: 202 SEENFAVVFGAMGVNMEVARFFRQDFESNGSMEKVILFLNLANDPTIERIITPRLSLTAA 261
++ ++ A+G + +M+ I+ A+D + + P
Sbjct: 1242 EKQKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCAMG 1063
Query: 262 EYLAYEREMHVLVILTDMSQYADSLREVSAAREEVPGRRSYPGYLYTDLSTIYERAGRVE 321
E+ + MH L+I D+S+ A + R++S PGR +YPG ++ S + ERA ++
Sbjct: 1062 EFF-RDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 886
Query: 322 GVNG--SITQIPILTMPSDDITHPIPDLTGYITEGQIFIDRQLHNKQIYPPINVLPSLSR 379
NG S+T +P++ + D++ IP IT+GQIF++ +L K I P INV S+SR
Sbjct: 885 DDNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 706
Query: 380 LMKSA 384
+ +A
Sbjct: 705 VGAAA 691
>04005
Length = 913
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Frame = +1
Query: 272 VLVILTDMSQYADSLREVSAAREEVPGRRSYPGYLYTDLSTIYERAGRVEGVNGSITQIP 331
VL+ + ++ ++ + EVSA +P Y L TD+ T+ ER + GSIT +
Sbjct: 13 VLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK--KGSITSVQ 186
Query: 332 ILTMPSDDITHPIPDLTGYITEGQIFIDRQLHNKQIYPPINVLPSLSRLMKSAIGIDDHG 391
+ +P+DD+T P P T + + R + IYP ++ L S SR++ I + H
Sbjct: 187 AIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRILDPNIVGEHHY 366
Query: 392 KVMTRVDHPDVSNELYAAYAIGKDTAAMK---AVVGEEALNEEDHLYLEFLKNFESKYIS 448
K+ V I +D +++ A++G + L+EED L + + + +++S
Sbjct: 367 KIARAVQK------------ILQDFKSLQDIIAILGMDELSEEDKLTVSRARKMQ-RFLS 507
Query: 449 Q 449
Q
Sbjct: 508 Q 510
>16215
Length = 1251
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Frame = -3
Query: 195 GKDVLDHSEENFA-------VVFGAMGVNM-EVARFFRQ-DFESNGS----MEKVILFLN 241
GK V+ S ++ V G G M EV R F + E G M++ L N
Sbjct: 607 GKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVEGKPESIMKRTALVAN 428
Query: 242 LANDPTIERIITPRLSLTAAEYLAYEREMHVLVILTDMSQYADSLREVSAAREEVPGRRS 301
+N P R + +T +EY + ++V ++ S++A++LRE+S E+P
Sbjct: 427 TSNMPVAAREASIYTGITLSEYFR-DMGLNVSMMADSTSRWAEALREISGRLAEMPADSG 251
Query: 302 YPGYLYTDLSTIYERAGRVEGVNGSITQIP 331
YP YL L++ YERAGRV + I + P
Sbjct: 250 YPAYLGARLASFYERAGRVICLGNPIARDP 161
>00095
Length = 572
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%)
Frame = -2
Query: 267 EREMHVLVILTDMSQYADSLREVSAAREEVPGRRSYPGYLYTDLSTIYERAGRVEGVNGS 326
E VL+ + ++ ++ + EVSA +P Y L TD+ T+ ER GS
Sbjct: 376 EEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTN--KGS 203
Query: 327 ITQIPILTMPSDDITHPIPDLTGYITEGQIFIDRQLHNKQIYPPINVLPSLSRLMKSAIG 386
IT + + +P+DD+T P P T + + R + IYP ++ L S SR++ I
Sbjct: 202 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRILDPNIV 23
Query: 387 IDDHGKV 393
+ H K+
Sbjct: 22 GEHHYKI 2
>00880
Length = 2381
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%)
Frame = -1
Query: 63 KGQVLEISGKKAVVQIFEGTDGIDSLYTHCEFTGETLQMPIAEEMLGRVFNGSGTPIDKG 122
KG L + V +F G D + + TG + +P+ +++LGRV + G PID
Sbjct: 2033 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGKDLLGRVVDALGNPIDGK 1857
Query: 123 PPVLAEKFQSINGQPINPYSRVYPKEMIQTGISAIDCMTSIARGQK 168
PV + Q + + R KE +QTGI A+D + I RGQ+
Sbjct: 1856 GPVGGGERQRVGVKAPGIIPRTSVKEPMQTGIKAVDSLVPIGRGQR 1719
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00193910__16.m00507NADH-quinone_oxidoreductase,
_F_subunit_family_protein
(474 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01940 428 e-137
27803 121 8e-28
31039 29 3.3
>01940
Length = 1263
Score = 428 bits (1100), Expect(3) = e-137, Method: Compositional matrix adjust.
Identities = 200/281 (71%), Positives = 229/281 (81%)
Frame = +2
Query: 125 TCKDREILRNDPHKLVEGALVVGFSMRARAAYIYIRGEFWVEANILQQAIDEAYAKGFIG 184
TCKDREI+R+DPH LVEG LV G +M A AAYIYIRGEF+ EA+ LQ A+ EAY G IG
Sbjct: 98 TCKDREIMRHDPHTLVEGCLVAGRAMNACAAYIYIRGEFYNEASNLQMAVKEAYDAGLIG 277
Query: 185 KNACGSGYDFDVYIHRGAGAYICGEETGLIESIEGKAGQPRVKPPFPANAGLYGCPTTVT 244
KNACGSGYDFDV++HRGAGAYICGEET LIES+EGK G+PR+KPPFPA+ G++GCPTTV
Sbjct: 278 KNACGSGYDFDVFVHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVA 457
Query: 245 NVETVAVCPTIMRRGASWFASFGRPNNAGTKLYCISGHVNNPCTVEEEMSIPLRELLEKH 304
NVETVAV P I RRG WFA GR N GTKL+ ISG VNNP TVEEEMSIPLREL+E+H
Sbjct: 458 NVETVAVAPMICRRGGEWFAGLGRERNRGTKLFNISGQVNNPTTVEEEMSIPLRELIERH 637
Query: 305 CGGVRGGWDNLLAVIPGGSSVPMMPKNVCDDVLMDFDALKAVGSGLGTAAVIVMDKSTDP 364
GGV GGWDNLLA+IPGGSS P++PK+VCDDVLMDFDAL +GLGTAA+IVM+K D
Sbjct: 638 SGGVIGGWDNLLAIIPGGSSTPLIPKSVCDDVLMDFDALVQAQTGLGTAAIIVMNKDADI 817
Query: 365 IDAILRLSKFYKHESCGQCTPCREGTGWIVDVMERLLVGNA 405
+ I RL FYKHESCGQCTPCREG W++ +M R + G A
Sbjct: 818 VRCISRLIDFYKHESCGQCTPCREGVTWMMKIMHRFMSGKA 940
Score = 73.2 bits (178), Expect(3) = e-137, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +3
Query: 408 AEIDMLQQVTQQIEMHTICALGDAAAWPVQGLIKNFREEIEDRIDSYHAK 457
EIDML ++++QIE HTICALGD AAWPVQGLI++FR E+E R+ Y K
Sbjct: 948 TEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEQRMKEYEKK 1097
Score = 28.1 bits (61), Expect(3) = e-137, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 105 VNPDGRPSYLVINSDESEPGTCK 127
NP YLV+N+DE EPG +
Sbjct: 39 TNPPTAAKYLVVNADEGEPGRAR 107
>27803
Length = 490
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 90/143 (62%)
Frame = +2
Query: 312 WDNLLAVIPGGSSVPMMPKNVCDDVLMDFDALKAVGSGLGTAAVIVMDKSTDPIDAILRL 371
W NLLA+ PGG S P++ K +D++MD+D+LKAVGS GT +IV+ K DP+ + +
Sbjct: 2 WKNLLALFPGGLSSPLIGKVAAEDLIMDYDSLKAVGSEFGTGGIIVISKDCDPLLVMQQS 181
Query: 372 SKFYKHESCGQCTPCREGTGWIVDVMERLLVGNADYAEIDMLQQVTQQIEMHTICALGDA 431
+FY ++C QCTPCR+G ++ ++M+ G + ID ++ + + + TICAL D+
Sbjct: 182 IEFYMEQTCKQCTPCRDGAIFLPEIMKNFTKGESVPQLIDFVEVICKTMVGTTICALSDS 361
Query: 432 AAWPVQGLIKNFREEIEDRIDSY 454
A +GLI F IE+RI ++
Sbjct: 362 QANVARGLITQFAPYIEERIQAF 430
>31039
Length = 640
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -3
Query: 422 MHTICALGD--AAAWPVQGLIKNFREEIEDRIDSY--HAKHPQLKKSRKSNPQIGHH 474
+HTI L + A+ ++ I F+ E +R S H HPQ KKS KSN HH
Sbjct: 173 VHTIYQLSNN*TDAYDIELSI--FQNEKNERKKSNKPHHYHPQPKKSTKSNKAQNHH 9
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00193910__16.m00507NADH-quinone_oxidoreductase,
_F_subunit_family_protein
(474 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01940 428 e-137
27803 121 8e-28
31039 29 3.3
>01940
Length = 1263
Score = 428 bits (1100), Expect(3) = e-137, Method: Compositional matrix adjust.
Identities = 200/281 (71%), Positives = 229/281 (81%)
Frame = +2
Query: 125 TCKDREILRNDPHKLVEGALVVGFSMRARAAYIYIRGEFWVEANILQQAIDEAYAKGFIG 184
TCKDREI+R+DPH LVEG LV G +M A AAYIYIRGEF+ EA+ LQ A+ EAY G IG
Sbjct: 98 TCKDREIMRHDPHTLVEGCLVAGRAMNACAAYIYIRGEFYNEASNLQMAVKEAYDAGLIG 277
Query: 185 KNACGSGYDFDVYIHRGAGAYICGEETGLIESIEGKAGQPRVKPPFPANAGLYGCPTTVT 244
KNACGSGYDFDV++HRGAGAYICGEET LIES+EGK G+PR+KPPFPA+ G++GCPTTV
Sbjct: 278 KNACGSGYDFDVFVHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCPTTVA 457
Query: 245 NVETVAVCPTIMRRGASWFASFGRPNNAGTKLYCISGHVNNPCTVEEEMSIPLRELLEKH 304
NVETVAV P I RRG WFA GR N GTKL+ ISG VNNP TVEEEMSIPLREL+E+H
Sbjct: 458 NVETVAVAPMICRRGGEWFAGLGRERNRGTKLFNISGQVNNPTTVEEEMSIPLRELIERH 637
Query: 305 CGGVRGGWDNLLAVIPGGSSVPMMPKNVCDDVLMDFDALKAVGSGLGTAAVIVMDKSTDP 364
GGV GGWDNLLA+IPGGSS P++PK+VCDDVLMDFDAL +GLGTAA+IVM+K D
Sbjct: 638 SGGVIGGWDNLLAIIPGGSSTPLIPKSVCDDVLMDFDALVQAQTGLGTAAIIVMNKDADI 817
Query: 365 IDAILRLSKFYKHESCGQCTPCREGTGWIVDVMERLLVGNA 405
+ I RL FYKHESCGQCTPCREG W++ +M R + G A
Sbjct: 818 VRCISRLIDFYKHESCGQCTPCREGVTWMMKIMHRFMSGKA 940
Score = 73.2 bits (178), Expect(3) = e-137, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +3
Query: 408 AEIDMLQQVTQQIEMHTICALGDAAAWPVQGLIKNFREEIEDRIDSYHAK 457
EIDML ++++QIE HTICALGD AAWPVQGLI++FR E+E R+ Y K
Sbjct: 948 TEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEQRMKEYEKK 1097
Score = 28.1 bits (61), Expect(3) = e-137, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 105 VNPDGRPSYLVINSDESEPGTCK 127
NP YLV+N+DE EPG +
Sbjct: 39 TNPPTAAKYLVVNADEGEPGRAR 107
>27803
Length = 490
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 90/143 (62%)
Frame = +2
Query: 312 WDNLLAVIPGGSSVPMMPKNVCDDVLMDFDALKAVGSGLGTAAVIVMDKSTDPIDAILRL 371
W NLLA+ PGG S P++ K +D++MD+D+LKAVGS GT +IV+ K DP+ + +
Sbjct: 2 WKNLLALFPGGLSSPLIGKVAAEDLIMDYDSLKAVGSEFGTGGIIVISKDCDPLLVMQQS 181
Query: 372 SKFYKHESCGQCTPCREGTGWIVDVMERLLVGNADYAEIDMLQQVTQQIEMHTICALGDA 431
+FY ++C QCTPCR+G ++ ++M+ G + ID ++ + + + TICAL D+
Sbjct: 182 IEFYMEQTCKQCTPCRDGAIFLPEIMKNFTKGESVPQLIDFVEVICKTMVGTTICALSDS 361
Query: 432 AAWPVQGLIKNFREEIEDRIDSY 454
A +GLI F IE+RI ++
Sbjct: 362 QANVARGLITQFAPYIEERIQAF 430
>31039
Length = 640
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -3
Query: 422 MHTICALGD--AAAWPVQGLIKNFREEIEDRIDSY--HAKHPQLKKSRKSNPQIGHH 474
+HTI L + A+ ++ I F+ E +R S H HPQ KKS KSN HH
Sbjct: 173 VHTIYQLSNN*TDAYDIELSI--FQNEKNERKKSNKPHHYHPQPKKSTKSNKAQNHH 9
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01146030__254.m00025catalase_family_protein
(490 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13683 479 e-135
07434 144 9e-55
19702 32 0.68
>13683
Length = 1237
Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/354 (64%), Positives = 271/354 (76%)
Frame = +1
Query: 14 TGSPVDDNQNSVTAGEYGPVLLQDFHLIDKLAHFDRERIPERVVHAKGAGAWGYFEVTHD 73
TG PV + S+T G GP+LLQDF D++AHF+RERIPERVVHAKG+GA+GYFEVTHD
Sbjct: 1 TGCPVGNKLASLTVGPRGPILLQDFVFTDEMAHFNRERIPERVVHAKGSGAFGYFEVTHD 180
Query: 74 VTKFCKAKVFETVGKRTPVFTRFSTVGGEKGSADTERDPRGFAVKFYTEEGNWDMVGNNT 133
+TK+CKAK+F VGK+TP+ RFSTVGGEKGSADT RDPRGFAVKFYTEEGNWD+VGNNT
Sbjct: 181 ITKYCKAKIFSKVGKKTPLAVRFSTVGGEKGSADTARDPRGFAVKFYTEEGNWDLVGNNT 360
Query: 134 PVFFIRDPIKFPDFIHTQKRNPQTNLKCANMFWDFLSQVPESAHQVTILFSDRGTPDGYR 193
P+FFIRDPI FP FIHTQKRNP TNLK +MFWDF+S PE+ HQV+ LFSDRGTPDGYR
Sbjct: 361 PIFFIRDPILFPSFIHTQKRNPATNLKDXDMFWDFISLRPETTHQVSFLFSDRGTPDGYR 540
Query: 194 RMNGYSSHTFKWVNEQGEAFWVKLHFKTDSGIKNFTAAEADALKSTNPDYATEDLFKHIA 253
MNGY SHTFK VN++ +A + K HFKTD GIKN A +A + T+PDYA DL+ IA
Sbjct: 541 HMNGYGSHTFKLVNDKNQAVYCKFHFKTDQGIKNMMADKAGEISGTDPDYAQRDLYNAIA 720
Query: 254 QGGSASWTLNVQVMPINDGYKYRWNIFDVTKVWPHGDYPLIPVGKLVLNRNPENYFAETE 313
SWTL++QVM KYRWN FD+TKVWP ++PLIPVGK+VL+RNP+NYFAE E
Sbjct: 721 DKHFPSWTLHIQVMTFQQAEKYRWNPFDLTKVWPQSEFPLIPVGKMVLDRNPKNYFAEVE 900
Query: 314 QSAFSPSHLVPGMEPSLDKMLQGRLFSYPDTHRHRLGANYDQIPVNCPYRARVS 367
Q AFSP H+VPG+EPSL K + + S+ TH G + +CP A ++
Sbjct: 901 QIAFSPVHMVPGVEPSLTKCCR-VVCSHTQTH---TGIVWAATTCSCPSTAPIT 1050
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = +3
Query: 331 DKMLQGRLFSYPDTHRHRLGANYDQIPVNCPYRARVSNNQRDGPMCVNGNQGSRVNYEPT 390
DKMLQGRLFSY DTHRHRLG+NY Q+PVNCPY + N QRDGP CV+ NQG NY P
Sbjct: 951 DKMLQGRLFSYSDTHRHRLGSNYLQLPVNCPYNTKARNYQRDGPQCVDDNQGDAPNYYPN 1130
Query: 391 TF 392
+F
Sbjct: 1131 SF 1136
>07434
Length = 864
Score = 144 bits (363), Expect(2) = 9e-55, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 100/162 (61%), Gaps = 5/162 (3%)
Frame = +3
Query: 325 GMEPSLDKMLQ-----GRLFSYPDTHRHRLGANYDQIPVNCPYRARVSNNQRDGPMCVNG 379
G+EPS DKMLQ GRLFSY DTHRHRLG+NY Q+PVNCPY + N QRDGP CV+
Sbjct: 150 GVEPSPDKMLQLWLLQGRLFSYSDTHRHRLGSNYLQLPVNCPYNTKARNYQRDGPQCVDD 329
Query: 380 NQGSRVNYEPTTFHNYKVRPETKLSTQRVTGLVGRFKPAHPNDDFSQPGALFRKVMSDKD 439
NQG NY P +F + V+G V R+ A +D+F+Q G + KV+ +
Sbjct: 330 NQGDAPNYYPNSFSGPVDNVKHLECPAHVSGDVQRYNTAD-DDNFTQTGTFWNKVLKVNE 506
Query: 440 KSNTVSNIVGHIKNANRDIQERQVRIFYKCDAEYGSKIATAL 481
++ V NI GH+K+A IQ+R V F K DAE+G ++ AL
Sbjct: 507 RTRLVENIAGHMKDAKDFIQQRAVANFAKADAEFGKQLQKAL 632
Score = 87.8 bits (216), Expect(2) = 9e-55, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = +2
Query: 276 RWNIFDVTKVWPHGDYPLIPVGKLVLNRNPENYFAETEQSAFSPSHLVPG 325
RWN FD+TKVWP ++PLIPVGK+VL+RNP+NYFAE EQ AFSP H+VPG
Sbjct: 2 RWNPFDLTKVWPQSEFPLIPVGKMVLDRNPKNYFAEVEQIAFSPVHMVPG 151
>19702
Length = 492
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 325 GMEPSL--DKMLQGRLFSYPDTHRHRLGANYDQIPVNCPYRARVSNNQRDG 373
G+ PSL D + GR F+ D+ +HRL + P P+R+ V+ R G
Sbjct: 368 GLLPSLHMDYCVCGRTFA--DSTQHRLFTTWGASPNQSPWRSXVAGRSRGG 222
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00836580__3743.m00003Tubulin/FtsZ_family,
_GTPase_domain_containing_protein
(443 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
16482 447 e-126
13181 440 e-124
04882 414 e-116
00276 273 8e-74
31457 239 1e-63
25015 239 2e-63
28905 236 7e-63
39157 223 4e-62
12457 204 4e-53
05902 156 2e-38
06360 134 7e-32
03702 112 4e-25
17215 85 5e-17
29025 42 7e-04
20906 29 3.4
28303 28 7.7
>16482
Length = 837
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 209/246 (84%), Positives = 219/246 (89%)
Frame = +1
Query: 1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYV 60
MREIVH+Q GQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG+YV
Sbjct: 100 MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 279
Query: 61 PRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVV 120
PRA+L+DLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 280 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 459
Query: 121 RKEAEGCDCLQGFQIXXXXXXXXXXXXXXXXXXKVREEYPDRIMETFSVVPSPKVSDTVV 180
RKEAE CDCLQGFQ+ K+REEYPDRIM TFSVVPSPKVSDTVV
Sbjct: 460 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 639
Query: 181 EPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCL 240
EPYNATLSVHQLVEN DE IDNEALYDICFRTLKLTTPTYGDLNHLVSA MSGVT CL
Sbjct: 640 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 819
Query: 241 RFPGQL 246
RFPGQL
Sbjct: 820 RFPGQL 837
>13181
Length = 1092
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/223 (90%), Positives = 215/223 (96%)
Frame = -3
Query: 208 YDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFM 267
YDICFRTLKLTTPTYGDLNHLVSA MSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM
Sbjct: 1090 YDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFM 911
Query: 268 IGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVD 327
GFAPLTSRGSQQYRALTVPELTQQMFDAKNMM A DPRHGRYLT +A+FRGRMS KEVD
Sbjct: 910 PGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVD 731
Query: 328 EQMLNVQNKNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFVGNSTAIQEMFKRVAEQFTA 387
EQMLNVQNKNSSYFVEWIPNN+K+++CDIPP+GLKM+ TFVGNSTAIQE+FKR++EQFTA
Sbjct: 730 EQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFVGNSTAIQELFKRISEQFTA 551
Query: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 550 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 422
>04882
Length = 1136
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 188/212 (88%), Positives = 204/212 (96%)
Frame = +2
Query: 219 TPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGS 278
TPTYGDLNHLVSA MSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGS
Sbjct: 320 TPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS 499
Query: 279 QQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNS 338
QQYRALTVPELTQQMFD+KNMM A DPRHGRYLT +A+FRGRMS KEVDEQMLNVQNKNS
Sbjct: 500 QQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNS 679
Query: 339 SYFVEWIPNNIKSSICDIPPKGLKMAVTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWY 398
SYFVEWIPNN+K+++CDIPP+GLKM+ TF+GNSTAIQE+FKR++EQFTAMFRRKAFLHWY
Sbjct: 680 SYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 859
Query: 399 TGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430
TGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 860 TGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 955
>00276
Length = 1330
Score = 273 bits (699), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/354 (38%), Positives = 203/354 (57%), Gaps = 8/354 (2%)
Frame = -3
Query: 79 GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQIXXX 138
G + QL P+ V G+ A NN+A+GHYT G EL+D VLD +RK A+ C LQGF I
Sbjct: 1325 GTYRQL-SPEQLVTGKEDAANNYARGHYTIGKELVDLVLDRIRKLADQCTGLQGFLIFHS 1149
Query: 139 XXXXXXXXXXXXXXXKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADE 198
++ +Y + F + P+P+VS VVEPYN+ L+ H +E++D
Sbjct: 1148 FGGGTGSGFTSLXMERLSVDYGKKSKLEFXIYPAPQVSTAVVEPYNSILTTHTTLEHSDC 969
Query: 199 CMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLI 258
++DNEA+YDIC R L + PTY +LN L+ +S +T LRF G LN DL + NL+
Sbjct: 968 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIXQIVSSITASLRFDGALNVDLTEFQTNLV 789
Query: 259 PFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFR 318
P+PR+HF + +AP+ S + L V E+T F+ N + DPRHG+Y+ L+R
Sbjct: 788 PYPRIHFPLATYAPVISAEKAYHEQLXVAEITNACFEPANQLVKCDPRHGKYMACCMLYR 609
Query: 319 GRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPP--------KGLKMAVTFVGN 370
G + K+V+ + ++ K + FV+W P K I PP ++ AV + N
Sbjct: 608 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSN 429
Query: 371 STAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 428 TTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 267
>31457
Length = 1530
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 106/122 (86%), Positives = 119/122 (97%)
Frame = +3
Query: 309 RYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFV 368
+YLT +A+FRGRMS KEVDEQMLNVQNKNSSYFVEWIPNN+K+++CDIPP+GLKM+ TF+
Sbjct: 234 KYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFI 413
Query: 369 GNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
GNSTAIQE+FKR++EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA
Sbjct: 414 GNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 593
Query: 429 TA 430
TA
Sbjct: 594 TA 599
>25015
Length = 458
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 107/116 (92%), Positives = 115/116 (99%)
Frame = -3
Query: 20 FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAG 79
FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG+YVPRA+L+DLEPGTMDSVR+G
Sbjct: 363 FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSG 184
Query: 80 PFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQI 135
PFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKEAE CDCLQGFQ+
Sbjct: 183 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQL 16
>28905
Length = 425
Score = 236 bits (603), Expect(2) = 7e-63, Method: Compositional matrix adjust.
Identities = 108/129 (83%), Positives = 121/129 (93%), Gaps = 1/129 (0%)
Frame = -1
Query: 253 LAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLT 312
+AVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQMFDAKNMM A DPRHGRYLT
Sbjct: 389 VAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLT 210
Query: 313 ASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFVGNST 372
+A+FRGRMS KEVDEQMLNVQNKNSSYFVEWIPNN+K+++CDIPP+GLKM+ TF+GNST
Sbjct: 209 VAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSGTFIGNST 30
Query: 373 AIQ-EMFKR 380
AIQ +FKR
Sbjct: 29 AIQGRLFKR 3
Score = 22.7 bits (47), Expect(2) = 7e-63, Method: Composition-based stats.
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2
Query: 242 FPGQLNSDL 250
FPGQLN+DL
Sbjct: 424 FPGQLNADL 398
>39157
Length = 488
Score = 223 bits (569), Expect(2) = 4e-62, Method: Compositional matrix adjust.
Identities = 106/127 (83%), Positives = 117/127 (92%), Gaps = 3/127 (2%)
Frame = -1
Query: 1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYV 60
MREIVH+Q GQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG+YV
Sbjct: 443 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 264
Query: 61 PRAILMDLEPGTMDSVRAG-PFG-QLFRPDNFVFGQTGAGNNWAKGHYTE-GAELIDSVL 117
PRA+L+DLEPGTMDSVR+G PFG ++FRPDNFVFGQ+GAGNNW + T+ GAEL+DSVL
Sbjct: 263 PRAVLVDLEPGTMDSVRSGSPFGPKIFRPDNFVFGQSGAGNNWGQKDTTQRGAELVDSVL 84
Query: 118 DVVRKEA 124
DVVRK
Sbjct: 83 DVVRKRG 63
Score = 33.1 bits (74), Expect(2) = 4e-62, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2
Query: 122 KEAEGCDCLQGFQI 135
KEAE CDCLQGFQ+
Sbjct: 70 KEAESCDCLQGFQL 29
>12457
Length = 781
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 140/236 (59%)
Frame = -1
Query: 65 LMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEA 124
L+DLEP +D VR G + QLF P+ V G+ A NN+A+GHYT G E++D VLD +RK A
Sbjct: 718 LVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTIGKEIVDLVLDRIRKLA 539
Query: 125 EGCDCLQGFQIXXXXXXXXXXXXXXXXXXKVREEYPDRIMETFSVVPSPKVSDTVVEPYN 184
+ C LQGF I ++ +Y + F++ P+P+VS VVEPYN
Sbjct: 538 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 359
Query: 185 ATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPG 244
+ L+ H +E++D ++DNEA+YDIC R L + PTY +LN L+ +S +T LRF G
Sbjct: 358 SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 179
Query: 245 QLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
LN DL + NL+P+PR+HF + +AP+ S + LTV E+T F+ N M
Sbjct: 178 ALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQM 11
>05902
Length = 1127
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 161/282 (57%), Gaps = 12/282 (4%)
Frame = +2
Query: 154 KVREEYPDRIMETFSVVPS-PKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICF 212
K+ + +P ++++T+SV P+ ++SD VV+PYN+ L++ +L +NAD +V+DN AL I
Sbjct: 74 KLNDRFPKKLIQTYSVFPNVDEISDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIAA 253
Query: 213 RTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAP 272
L + TPT+ +N LVS MS T LR+PG +N+DL L +LIP PRLHF M G+ P
Sbjct: 254 DRLHIDTPTFAQVNQLVSTVMSTSTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTP 433
Query: 273 LTSRGS-QQYRALTVPELTQQMFDAKNMMCAADPRHGR----YLTASALFRGRMSTKEVD 327
LT+ R TV ++ +++ KNMM + P H + Y++ + +G + +V
Sbjct: 434 LTTDSQVANVRKTTVLDVMRRLLQPKNMMVST-PVHRQANHCYISILNIIQGEVDPTQVH 610
Query: 328 EQMLNVQNKNSSYFVEWIPNNIKSSICDIPP---KGLKMAVTFVGNSTAIQEMFKRVAEQ 384
+ + ++ + + F+ W P +I+ ++ P +++ + N T+I +F+R+ Q
Sbjct: 611 KSLQRIRERKLAQFIPWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSISHLFERILRQ 790
Query: 385 FTAMFRRKAFLHWYTGEGM--DEM-EFTEAESNMNDLVSEYQ 423
+ + +R+AF+ + E + D + EF + + LV EYQ
Sbjct: 791 YDKLRKREAFMDQFKKEAIFKDNLDEFDNSREALQLLVDEYQ 916
>06360
Length = 1896
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
Frame = -1
Query: 1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGR 58
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1710 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 1531
Query: 59 YVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLD 118
+VPRA+ +DLEP +D VR G + QLF P+ V G+ A NN+A+GHYT G E++D VLD
Sbjct: 1530 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTIGKEIVDLVLD 1351
Query: 119 VVRKEAEGCDCLQGFQIXXXXXXXXXXXXXXXXXXKVREEYPDRIMETFSVVPSPKVSD 177
+RK A+ C LQGF I ++ +Y + F++ P+P+VSD
Sbjct: 1350 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSD 1174
>03702
Length = 1932
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Frame = +1
Query: 167 FSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLN 226
F++ P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P Y +LN
Sbjct: 1501 FAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPXYTNLN 1680
Query: 227 HLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIG-FAPLTSRGSQQYRALT 285
L+ +S +T LRF G LN DL + NL+P P H G P+ S + LT
Sbjct: 1681 RLIGQIVSSITASLRFDGALNVDLTEFQTNLVPTP--HPLPPGHLCPVISAEKAYHEQLT 1854
Query: 286 VPELTQQMFDAKNMMCAADP 305
V E+T F+ N + DP
Sbjct: 1855 VAEVTNACFEPANQLVKCDP 1914
>17215
Length = 632
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Frame = +3
Query: 316 LFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPP--------KGLKMAVTF 367
L+RG + K+V+ + ++ K + FV+W P K I PP ++ AV
Sbjct: 6 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 185
Query: 368 VGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
+ N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 186 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 356
>29025
Length = 395
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -3
Query: 412 ESNMNDLVSEYQQYQDATA 430
ESNMNDLVSEYQQYQDATA
Sbjct: 354 ESNMNDLVSEYQQYQDATA 298
>20906
Length = 408
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 35 TYHGDSDLQLERINVYYNEATGGRYVPRAILM 66
TY DS + L ++ ++NE TG VPR I M
Sbjct: 2 TYQNDSFISLTVVHYHFNETTG**NVPRQIKM 97
>28303
Length = 502
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 196 ADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTC 238
++ M+ ALY C+ ++ L +PT DL+H S VTC
Sbjct: 331 SEHAMIAXVTALYK-CWTSITLASPTMPDLSHETSFRKGDVTC 456
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00333220__3689.m00002AMP-binding_enzyme_family_protein
(692 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02291 355 e-121
14024 176 3e-44
03756 93 4e-19
34113 75 7e-14
20450 65 9e-11
11241 62 9e-10
21564 61 2e-09
26510 60 3e-09
13327 37 0.025
14264 34 0.20
37217 33 0.51
00262 32 0.96
19187 31 2.1
>02291
Length = 3161
Score = 355 bits (910), Expect(2) = e-121, Method: Compositional matrix adjust.
Identities = 194/431 (45%), Positives = 252/431 (58%), Gaps = 3/431 (0%)
Frame = -1
Query: 136 GSIFGYYLPVGVYTTNGPEACQYVAENSDCEVVIVENQTHLDKYLKVLDKLPLLKYIVVY 195
G I+ L G+YTTN PEAC++VA +S V++ EN L K L+V LP LK IV Y
Sbjct: 3161 GCIYAGGLATGIYTTNSPEACEFVAASSQANVIVAENSQQLKKILQVRHNLPHLKAIVQY 2982
Query: 196 NDTIKNVPENCRVKVFTWDQFMSHGRSFKPENPADILENRMIKQRPGNCCTLVYTSGTTG 255
V E V +W+QFM G P +L+ R+ P CC L+YTSGTTG
Sbjct: 2981 TG---QVDEAHAKDVLSWEQFMKAGDDV----PDSVLDERIKALSPNKCCVLIYTSGTTG 2823
Query: 256 MPKGVMLSHDNYTWTCKACIGKYGLAPNQ---QERLVSYLPLSHVAAQIIDIVGNIEGGA 312
PKGVMLSHDN T+T + N Q+ +SYLPLSH+AAQ++DI I G
Sbjct: 2822 TPKGVMLSHDNITYTVAVNMSSTMQQLNTKFGQQSGISYLPLSHIAAQMMDIYVXIGFGG 2643
Query: 313 HMFFADPSALSGSLVETLKEVRPTFFFSVPRVWEKIEEKMKALAASNGWLKTKIATWAKG 372
+FA P AL GSL TL+EVRP F VPRVWEK++E M+ A S +K KI WAKG
Sbjct: 2642 TTYFAQPDALKGSLGATLREVRPHIFLGVPRVWEKMQETMQTAARSVTGMKKKIGAWAKG 2463
Query: 373 MGVEGTFAEVHNKKLPFGFGLAXXXXXXXXXXALGLDQSRFLMYGAAPLSPAIREYFLSL 432
+G++ +A + + P LA LGLD+ + GAAP++ EYF+SL
Sbjct: 2462 VGLKANYAIMEGRSPPAXXPLANALVFKKVRGLLGLDRCLMQLSGAAPIAKETLEYFMSL 2283
Query: 433 NMYLISGYGMSECAGPECLSDPSNYDKFEGDFFNSTGAGISGTDLVIYQPDKEGNGEICY 492
N+ + YGMSEC+GP + P + NS G ++G + D++GNGE+
Sbjct: 2282 NVPICEVYGMSECSGPHTVGFPKV------NRVNSVGRELNGCTTELANQDEDGNGEVVM 2121
Query: 493 KGRNRFMGYFKNEDATRQTIDSQGFLHSGDVGKLDKFGNLTITGRIKELIITAGGENVAP 552
GR+ FMGY +E+ T++ +D G LHSGDVGK DK G L ITGRIKELIITAGGEN+ P
Sbjct: 2120 HGRHVFMGYLNDEEKTKEALDDAGGLHSGDVGKKDKDGFLFITGRIKELIITAGGENIPP 1941
Query: 553 VLIENILKENL 563
V IE+ +KE L
Sbjct: 1940 VAIEDRVKEAL 1908
Score = 100 bits (248), Expect(2) = e-121, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 87/128 (67%), Gaps = 4/128 (3%)
Frame = -2
Query: 566 VSNAVVIGDKRKYLVVLLTFKFVQEGDKL--SNQLSPESLREFEALGSTAKTVAEAKK-- 621
VS ++IGDKRK+L +LLTFK D L + +L+P + ++GS+A T+ E +
Sbjct: 1900 VSQCMLIGDKRKFLSMLLTFKVEVNQDTLEPTEKLTPIAQDWVRSVGSSATTITEILEPG 1721
Query: 622 DPKILQAIEQAIKKTNSKAISRAQNIQKYAILDSDFSIDGGDLTPTLKLKRNVVNQKHEA 681
D ++LQA+++ I + NS+A S AQ IQK+++L +DFSI GG+L PT+K++R ++++ +
Sbjct: 1720 DKEVLQAVQRGIDRVNSRATSNAQKIQKWSLLKNDFSIPGGELGPTMKMRRPIIHKMYTK 1541
Query: 682 LIESLYVD 689
I++ Y D
Sbjct: 1540 TIDAFYED 1517
>14024
Length = 655
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 139/216 (64%), Gaps = 2/216 (0%)
Frame = +3
Query: 405 ALGLDQSRFLMYGAAPLSPAIREYFLSLNMYLISGYGMSECAGPECLSDPSNYDKFEGDF 464
ALG D+ L+ AAP+SP ++YFLSL+M ++ +GMSE +G L P +
Sbjct: 18 ALGFDRVISLVSAAAPMSPETKKYFLSLDMKILDAFGMSETSGCHTLCQP------DSTL 179
Query: 465 FNSTGAGISGTDLVIYQPDKEGNGEICYKGRNRFMGYFKNEDATRQTIDSQGFLHSGDVG 524
NS G + G + I D G+GE+C +GR+ FMGY N++ T +++D +LHSGD+
Sbjct: 180 LNSIGKSLPGCESKIINQDANGHGELCIRGRHVFMGYISNKEKTEESLDDDCWLHSGDLA 359
Query: 525 KLDKFGNLTITGRIKELIITAGGENVAPVLIENILKENLNFVSNAVVIGDKRKYLVVLLT 584
+D G + +TGR+KELIITAGGEN+ PV IENI+K+ L+ +SNA ++G++RKYL VL++
Sbjct: 360 YIDDKGYVCLTGRLKELIITAGGENIPPVHIENIIKKELDGISNAFLVGEQRKYLTVLVS 539
Query: 585 FKFVQEGDKLS--NQLSPESLREFEALGSTAKTVAE 618
K + D + ++L+ ES ++LG KT+++
Sbjct: 540 IKTEVDRDTGAPLDELTHESAVWMKSLGVEHKTLSD 647
>03756
Length = 992
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Frame = +2
Query: 93 LTYKQYFEESKVFGKALISLGMTPYRS--VNIIGFNSPEWVISFYGSIFGYYLPVGVYTT 150
++Y+Q + + FG LIS G+ P S V I N EW ++ G +PV +Y T
Sbjct: 284 MSYRQVLDRAHCFGSGLISKGVQPSNSSFVGIYSGNCVEWSLADLGCHMYSMVPVPLYDT 463
Query: 151 NGPEACQYVAENSDCEVVIVENQTHLDKYLKVLDKLPLLKYIVVYNDT----IKNVPENC 206
GP+AC Y+ + V+ ++ + L++ D++P LK + T I+++
Sbjct: 464 LGPQACVYIINQTKLCTVVCDDVNKAKRLLEIADQVPSLKRFIFTGKTWPQDIRDLANER 643
Query: 207 RVKVFTWDQFMSHGRSFKPENPADILENRMIKQRPGNCCTLVYTSGTTGMPKGVMLSHDN 266
+V++ T+ + S G + +P I +P + TL YTSGTTG PKGVML+H N
Sbjct: 644 KVELLTFKEIESIG-TKDTRDP--------IPPKPDDLATLCYTSGTTGDPKGVMLTHAN 796
Query: 267 Y 267
+
Sbjct: 797 F 799
>34113
Length = 694
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Frame = -3
Query: 103 KVFGKALISLGMTPYRSVN--IIGFNSPEWVISFYGSIFGYYLPVGVYTTNGPEACQYVA 160
K FG L +LG+ P + N I NS EWVI+ + V +Y T G EA +YV
Sbjct: 566 KHFGSGLFALGVKPGQDTNFGIFTQNSSEWVIADQACQMYSMVTVALYDTLGVEAVKYVV 387
Query: 161 ENSDCEVVIVENQTHLDKYLKVLDKLPLLKYIVVYNDTIKNVPENCR---VKVFTWDQFM 217
++ V+ + + L+ +LP LK IV+ + + + + + VK+ + +
Sbjct: 386 NLAEIGTVVCDKEVRAKILLEGKSELPCLKLIVMXEEITEELQQKAQRAGVKIIRFSEVE 207
Query: 218 SHGRSFKPENPADILENRMIKQRPGNCCTLVYTSGTTGMPKGVMLSHDN 266
G+ +I E + K P + CT+ +TSGTTG PKGV+L+H N
Sbjct: 206 DLGKK-------NIREPLLPK--PSDVCTICFTSGTTGNPKGVVLTHAN 87
>20450
Length = 775
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 68/121 (56%)
Frame = -3
Query: 488 GEICYKGRNRFMGYFKNEDATRQTIDSQGFLHSGDVGKLDKFGNLTITGRIKELIITAGG 547
G++ +G GY KN AT TID+QG+L +GDVG+ D G L I R KEL I G
Sbjct: 551 GDLYKRGPLIMRGYHKNPQATADTIDAQGWLKTGDVGQFDSNGFLYIVDRKKEL-IKYKG 375
Query: 548 ENVAPVLIENILKENLNFVSNAVVIGDKRKYLVVLLTFKFVQEGDKLSNQLSPESLREFE 607
E VAP ++E++L + +S+A VIG + + L FV + N L+ + +++F
Sbjct: 374 EQVAPAMLEDVLLSHPG-ISDAAVIG-RPDDMAGELPMAFVVKATG-GNDLTEKEVKDFV 204
Query: 608 A 608
A
Sbjct: 203 A 201
>11241
Length = 539
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +3
Query: 639 KAISRAQNIQKYAILDSDFSIDGGDLTPTLKLKRNVVNQKHEALIESLY 687
++IS AQ +QK+AI+ DFSI G+L PTLK+KRNVVN+ + LIE+LY
Sbjct: 69 QSISNAQKVQKFAIMPHDFSIVTGELGPTLKVKRNVVNKMYADLIETLY 215
>21564
Length = 509
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Frame = +1
Query: 89 KWVTLTYKQYFEESKVFGKALISLGMTPYRS--VNIIGFNSPEWVISFYGSIFGYYLPVG 146
+W+T Y + + ++ G LI+LG++P + V + N PE+VI+ G + V
Sbjct: 82 RWIT--YNELLQRAEYIGAGLIALGLSPQNTTRVGVYSQNRPEYVITDCGLWAYSMVGVP 255
Query: 147 VYTTNGPEACQYVAENSDCEVVIVENQTHLDKYLKVLDKLPLLKYIVVYNDTI---KNVP 203
+Y T G EAC ++ ++ +VV+ + + L+ L + P LK +VV D + +
Sbjct: 256 LYDTLGAEACNHILNQAEIKVVVCDTNVKVKNMLQRLSETPNLKILVVMEDITGESRQMA 435
Query: 204 ENCRVKVFTWDQFMSHGRS 222
+ VK+ + + G++
Sbjct: 436 DRAGVKLLQFKELEEMGKA 492
>26510
Length = 1692
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%)
Frame = +2
Query: 488 GEICYKGRNRFMGYFKNEDATRQTIDSQGFLHSGDVGKLDKFGNLTITGRIKELIITAGG 547
GE C G + +GY N+ AT ID G+LH+GD+G + + G + I R+KELI G
Sbjct: 1277 GEYCMDGPQKMLGYLHNQQATDDMIDRDGWLHTGDLGYMREDGMIIIEDRLKELIKYKGF 1456
Query: 548 ENVAPVLIENILKENLNFVSNAVVIG 573
+ V P +E++L + V +A VIG
Sbjct: 1457 Q-VPPAELESLLLSH-PAVQDAGVIG 1528
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 247 LVYTSGTTGMPKGVMLSHDNYTWTCKACIGKYGLAPNQQ--ERLVSYLPLSHVAAQIIDI 304
L Y+SGTTG+PKGVMLSH N A I ++ N Q +R + LP H+
Sbjct: 712 LPYSSGTTGLPKGVMLSHRNIV----ANILQFRELANTQPEDRTLGLLPFFHIYGLTCVQ 879
Query: 305 VGNIEGGAHM 314
G + GA +
Sbjct: 880 FGTLYDGAEL 909
>13327
Length = 549
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +3
Query: 517 FLHSGDVGKLDKFGNLTITGRIKELIITAGGENVAPVLIENILKENLNFVSNAVVIG 573
+L SGDVG D G L I R KEL I E V P ++E++L + +S+A VIG
Sbjct: 3 WLDSGDVGYFDSDGFLYIVDRKKEL-IKFKAEQVPPAMLEDVLLTHPG-ISDAAVIG 167
>14264
Length = 1790
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Frame = -3
Query: 225 PENPADILENRMIKQRPGNCCTLVYTSGTTGMPKGVMLSHDNY-TWTCKACIGKYGLAPN 283
P P L ++M G +YTSGTTG+PK V + +T A + L
Sbjct: 1083 PVRPDPSLRSQMTDDTIG---VYIYTSGTTGLPKPVYYNQKKLKMFTTTAQL----LDVT 925
Query: 284 QQERLVSYLPLSHVAAQIIDIVGNIEGG----------AHMFFADPSALSGSLVETLKEV 333
Q+ + + LPL H++A + +G + G A F++D + ++V+ + E+
Sbjct: 924 TQDIVYTVLPLYHISAFGVGFMGLLHQGGTSVLKRKFSASQFWSDCRTYNVTIVQYIGEL 745
>37217
Length = 548
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Frame = -2
Query: 414 LMYGAAPLSPAIREYFLS-LNM-YLISGYGMSECAGPECLSDPSNYDKFEGDFFNSTGAG 471
L+ GAAPLS + L + ++ GYG+SE + + + N
Sbjct: 328 LLCGAAPLSRETEDQIKERLGIPFIRQGYGLSESTLSVLVQNDEHCKPGSVXVLNV---- 161
Query: 472 ISGTDLVIYQPDKEGN------GEICYKGRNRFMGYFKNEDATRQTIDSQGFLHSG 521
G + PD + GE+C+KG GY ++ +T+ TI G+LH+G
Sbjct: 160 --GVYAKVIDPDTGKHLGANERGELCFKGPGIMKGYIGDKRSTQTTI-KDGWLHTG 2
>00262
Length = 1036
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = -1
Query: 487 NGEICYKGRNRFMGYFKNEDATRQTIDSQGFLHSGDVGKLDKFGNLTITGRIKELIITAG 546
GEI K + Y N++A +++ G+ + D+G ++ ++ GR + IT G
Sbjct: 913 TGEIIAKSPALYSRYIDNDEAAKKSFTPDGWFRTDDMGCFNQDKHIIHLGRRTDA-ITRG 737
Query: 547 GENVAPVLIENILKENLNFVSNAVV 571
P +E +L+ + + VV
Sbjct: 736 AYLCYPGWLETLLRRSPSVRDVCVV 662
>19187
Length = 742
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = +2
Query: 487 NGEICYKGRNRFMGYFKNEDATRQTIDSQGFLHSGDVGKLDKFGNLTITGRIKELIITAG 546
GEI K + Y N++A +++ G+ + D+G ++ ++ GR + IT G
Sbjct: 446 TGEIIAKSPALYSRYIDNDEAAKKSFTPDGWFRTDDMGCFNQDKHIIHLGRRTD-AITRG 622
Query: 547 GENVAPVLIENILKENLNFVSNAVV 571
P +E +L+ + + VV
Sbjct: 623 AYLCYPGWLETLLRHSPSVRDVCVV 697
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00105110__7.m00462dnaK_protein
(652 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
21024 253 e-108
30255 283 2e-91
26390 189 4e-48
27378 157 1e-38
37715 137 2e-32
24750 114 1e-25
20979 83 3e-16
31218 79 6e-15
06909 66 5e-13
09881 66 4e-11
12271 57 2e-08
13300 52 8e-07
13684 48 1e-05
03996 46 5e-05
34036 39 0.007
>21024
Length = 3220
Score = 253 bits (646), Expect(2) = e-108, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 208/338 (61%), Gaps = 4/338 (1%)
Frame = +1
Query: 274 ERAKRILSSSAQATIEVDAL----ADSEDFMMVISRPKFEELCLSMFKECIPPVEKVLKD 329
+++K LSSS Q I + L + + + +SR KFE L S+ K + P +K L+D
Sbjct: 1027 QKSKIELSSSLQTDINLPYLTMDASGPKHMNLKLSRSKFESLVESLVKRTVGPCQKALQD 1206
Query: 330 SGMAKNQVHEVVLVGGSTRIPKVIQLITEFFNGKEPNRSINPDEXXXXXXXXXXXILTGS 389
+ + K+ + EV+LVGG +R+PKV + + F G+ P++S+NPDE +L G
Sbjct: 1207 AEVKKSDIGEVILVGGMSRMPKVQSTVQDLF-GRTPSKSVNPDEAVAIGAAIQGGVLAGD 1383
Query: 390 GSEHIQDVLLLDVTPLSMGIETAGQVMTVLIPRNTTIPTKKSQVFTTYADNQPGVLIQVF 449
+ DVLLLDVTPLS+GIET G V T LI RNTTIPTKKSQVF+T AD Q V I+V
Sbjct: 1384 ----VTDVLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVH 1551
Query: 450 EGERPMTKDNHLLGKFNLDGIAPAPRGVPQIEVSFDIDENGILNVTATDKGTSKSNKITI 509
+GER M DN LLG+F L GI PAPRGVPQ+EV+FDID NGI+NV+A DKGT K +I I
Sbjct: 1552 QGEREMANDNKLLGQFTLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDKGTGKEQQIVI 1731
Query: 510 TNQKGRLSQDEIDRLIKEAEKFKGEDEALKKKVEAKNGLENYTYSIRNSLKDEKLKDKFS 569
+ G LS+DEI+ +IK AE +D K+ VE N ++ + + + E+ KD+
Sbjct: 1732 QSSGG-LSKDEIENMIKNAEAHAEDDRRKKELVEVLNQADSIIHDTESKM--EEFKDQLP 1902
Query: 570 AEEREKVQKLVDETSKWLEENHNAEAEEYSHKQKALEE 607
EE +K+++ ++E + L N E+ + L++
Sbjct: 1903 QEECDKLREKINEVKQLLANKDNEAPEKIREETSDLQQ 2016
Score = 157 bits (397), Expect(2) = e-108, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 151/263 (57%), Gaps = 2/263 (0%)
Frame = +3
Query: 15 DLGTTYSCVGVFINDRVEIIANDQGNRTTPSYVAFT-ETERLIGDAAKNQVARNPTNTVF 73
DLGTT SCV + + +++ N +G+RTTPS +AFT + ER+ G AK Q N NT+
Sbjct: 264 DLGTTNSCVALMEGKQAKVLENSEGSRTTPSVIAFTKDGERISGMPAKRQAVTNAENTLS 443
Query: 74 DAKRLIGRKFNETVVQKDIKLWPFKVEAGPDDKPKIVVKHKGEVKKFHAEEISSMVLVKM 133
KRLIGR+F + VQKD+K +K+ + + + + K + ++ + VL+KM
Sbjct: 444 ATKRLIGRRFEDPEVQKDMKNVSYKIVKASNGDAWV----EAQGKMYSPSQVGAFVLMKM 611
Query: 134 REIAEAFLTKQIKNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDK 193
+E AE++L ++ NAV+TVPAYFNDSQRQATKDAG I+GL + + + +
Sbjct: 612 KETAESYLGSKVNNAVVTVPAYFNDSQRQATKDAGQISGLKCVACDQRTHSCSSCFMAWT 791
Query: 194 KGQGEKNVLIFDLGGGTFDVSLLTLDDGIFEVKATAGDTHLGGE-DFDNKLVEFCAADFL 252
+ + + G +S + + + + T +TH E FDN +V F A++F
Sbjct: 792 SLKIK**RCLI*AEGRLTSLSWRSRRECLKSNQPT--ETHSWEERTFDNYMVNFLASEFK 965
Query: 253 KKKNIDIRENPRAMRRLRTQCER 275
K++ +DI ++P A++RLR E+
Sbjct: 966 KEQGLDITKDPMAVQRLREAAEK 1034
>30255
Length = 1761
Score = 283 bits (724), Expect(2) = 2e-91, Method: Compositional matrix adjust.
Identities = 137/199 (68%), Positives = 161/199 (80%)
Frame = -1
Query: 334 KNQVHEVVLVGGSTRIPKVIQLITEFFNGKEPNRSINPDEXXXXXXXXXXXILTGSGSEH 393
K +HE+VLVGGSTRIPK+ +L+ +FFNGKE +SINPDE IL G SE
Sbjct: 1644 KPGIHEIVLVGGSTRIPKIQKLLQDFFNGKELCKSINPDEAVAYGACVQAAILHGDKSEE 1465
Query: 394 IQDVLLLDVTPLSMGIETAGQVMTVLIPRNTTIPTKKSQVFTTYADNQPGVLIQVFEGER 453
+QD+LLLDV PLSMGIETAG VMT LI RNTTIPTK++Q FTTY+DNQPGVLIQV+EGER
Sbjct: 1464 VQDLLLLDVAPLSMGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 1285
Query: 454 PMTKDNHLLGKFNLDGIAPAPRGVPQIEVSFDIDENGILNVTATDKGTSKSNKITITNQK 513
MT+DN+LLGKF L GI PAPRGVPQIEV+FDID NGILNV+A DK T K NKITITN K
Sbjct: 1284 AMTRDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAADKSTGKENKITITNDK 1105
Query: 514 GRLSQDEIDRLIKEAEKFK 532
GRLS++EI+R++ +AEK +
Sbjct: 1104 GRLSKEEIERMVNDAEKSR 1048
Score = 72.0 bits (175), Expect(2) = 2e-91, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 56/80 (70%)
Frame = -3
Query: 541 KVEAKNGLENYTYSIRNSLKDEKLKDKFSAEEREKVQKLVDETSKWLEENHNAEAEEYSH 600
++ +KN LE+Y + ++++++DEK+KDK E+++ + +E WL+ N AE +EY
Sbjct: 1024 RISSKNSLESYAFHMKSTIEDEKIKDKIGEEDKKTIVDKCNEVISWLDANQTAEKDEYDD 845
Query: 601 KQKALEEVFNPIMMRVYQST 620
KQK LE+V NPI+ ++YQ++
Sbjct: 844 KQKELEKVCNPIITKLYQAS 785
>26390
Length = 665
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 124/178 (69%)
Frame = +2
Query: 396 DVLLLDVTPLSMGIETAGQVMTVLIPRNTTIPTKKSQVFTTYADNQPGVLIQVFEGERPM 455
DVL++DV LS+GIET G VMT LI R TTIP +K++VF+T DNQ V IQV+EGER
Sbjct: 14 DVLVMDVNALSLGIETVGGVMTTLIARGTTIPARKAKVFSTAQDNQDSVTIQVYEGERSR 193
Query: 456 TKDNHLLGKFNLDGIAPAPRGVPQIEVSFDIDENGILNVTATDKGTSKSNKITITNQKGR 515
TKDNHLLG+F+L GI APRGVPQIEV+F +D NG++ V+A DKGT + N I I
Sbjct: 194 TKDNHLLGRFDLTGIPAAPRGVPQIEVTFQVDANGVMQVSAEDKGTGQKNDIIIQQSGSG 373
Query: 516 LSQDEIDRLIKEAEKFKGEDEALKKKVEAKNGLENYTYSIRNSLKDEKLKDKFSAEER 573
LS ++++R+++EA+ F ED ++ E++ GLE+ Y+ ++ L+D K A ER
Sbjct: 374 LSPEDVERMVQEAQDFAEEDRKFRELTESRTGLESLAYTAQHQLQDLH---KMXASER 538
>27378
Length = 410
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/124 (59%), Positives = 91/124 (73%)
Frame = -1
Query: 250 DFLKKKNIDIRENPRAMRRLRTQCERAKRILSSSAQATIEVDALADSEDFMMVISRPKFE 309
+F +K D+R NPRA+RRLRT ERAKR LSSS +ATIEVDAL + DF ISR +FE
Sbjct: 410 EFKRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEVDALFEGHDFYTKISRARFE 231
Query: 310 ELCLSMFKECIPPVEKVLKDSGMAKNQVHEVVLVGGSTRIPKVIQLITEFFNGKEPNRSI 369
ELC +F++ + PVEK L D+ M K +H++VLVGGSTRIPKV L+ +FF GK N SI
Sbjct: 230 ELCADLFRQTLAPVEKALNDAKMDKQMIHDIVLVGGSTRIPKVQNLLQQFFGGKSLNLSI 51
Query: 370 NPDE 373
NPDE
Sbjct: 50 NPDE 39
>37715
Length = 468
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 78/105 (74%)
Frame = -2
Query: 104 DDKPKIVVKHKGEVKKFHAEEISSMVLVKMREIAEAFLTKQIKNAVITVPAYFNDSQRQA 163
+KP I G K F EEIS+MVL KMR+IAEA+L K+I NAV+TVPAYFND+QRQA
Sbjct: 440 SNKPHIQALVSGATKTFAPEEISAMVLGKMRDIAEAYLGKKIDNAVVTVPAYFNDAQRQA 261
Query: 164 TKDAGAIAGLNVLRIINEPTAAAIAYGLDKKGQGEKNVLIFDLGG 208
TKDAG IAGLNV+RIINEPTAAAIAYGLDK+ GEK
Sbjct: 260 TKDAGTIAGLNVMRIINEPTAAAIAYGLDKR-DGEKTFWCLTWAA 129
Score = 80.9 bits (198), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/47 (72%), Positives = 44/47 (93%)
Frame = -1
Query: 199 KNVLIFDLGGGTFDVSLLTLDDGIFEVKATAGDTHLGGEDFDNKLVE 245
+N+L+FDLGGGTFDVSLLT+D+G+FEV AT GDTHLGGEDFD ++++
Sbjct: 159 ENILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMD 19
>24750
Length = 552
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 61/71 (85%)
Frame = +1
Query: 445 LIQVFEGERPMTKDNHLLGKFNLDGIAPAPRGVPQIEVSFDIDENGILNVTATDKGTSKS 504
++QV+EGER MT+DN+LLGKF L GI PAPRGVPQIEV+FDID NGILNV+A DK T K
Sbjct: 154 MLQVYEGERAMTRDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAADKSTGKE 333
Query: 505 NKITITNQKGR 515
NKITITN KG+
Sbjct: 334 NKITITNDKGQ 366
>20979
Length = 976
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 72/121 (59%)
Frame = +1
Query: 253 KKKNIDIRENPRAMRRLRTQCERAKRILSSSAQATIEVDALADSEDFMMVISRPKFEELC 312
KK++ + +NPRAM +L + ER K++LS+++ +V+ L + EDF +SR + EL
Sbjct: 127 KKRSFKLEDNPRAMAKLLKEAERVKKVLSANSDHKAQVEGLVEGEDFAAKVSREDYLELI 306
Query: 313 LSMFKECIPPVEKVLKDSGMAKNQVHEVVLVGGSTRIPKVIQLITEFFNGKEPNRSINPD 372
+ P+E LK S + ++ E++L+GG +R+P+V + + +F + +SIN D
Sbjct: 307 KDLLARVTKPMEDALKVSEITMPEITEIILMGGGSRVPRVQEELLKFSGKSDLGKSINTD 486
Query: 373 E 373
E
Sbjct: 487 E 489
>31218
Length = 322
Score = 79.0 bits (193), Expect = 6e-15, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 65/106 (61%)
Frame = +2
Query: 231 DTHLGGEDFDNKLVEFCAADFLKKKNIDIRENPRAMRRLRTQCERAKRILSSSAQATIEV 290
DTHLGGEDFD +LV++ +K D+R + RAM RLR E+AKR LSS +++
Sbjct: 2 DTHLGGEDFDQRLVDYLVKLIKQKTGRDVRHDTRAMSRLRRSAEKAKRALSSQHSTKVDL 181
Query: 291 DALADSEDFMMVISRPKFEELCLSMFKECIPPVEKVLKDSGMAKNQ 336
D + S+ + ++R KFEEL +F+ + V++ L+DSG + +
Sbjct: 182 DGVT-SDLADLTLTRAKFEELNTDLFRSTLTTVKRALEDSGKGRKR 316
>06909
Length = 456
Score = 65.9 bits (159), Expect(2) = 5e-13, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Frame = -3
Query: 555 IRNSLKDEKLKDKFSAEEREKVQKLVDETSKWLEENHNAEAEEYSHKQKALEEVFNPIMM 614
++++++DEK+KDK S E+++ + DE WL+ N AE +EY KQK +E+V NPI+
Sbjct: 382 MKSTIEDEKIKDKISTEDKKTILDKCDEVIAWLDANQLAEKDEYDDKQKEIEKVCNPIIT 203
Query: 615 RVYQSTGGV 623
++YQ+ GG
Sbjct: 202 KLYQAAGGA 176
Score = 26.6 bits (57), Expect(2) = 5e-13, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 530 KFKGEDEALKKKVEAKNGLENYT 552
K+K +DE K ++ AKN LE+Y
Sbjct: 456 KYKEDDEKQKSRISAKNSLESYA 388
>09881
Length = 600
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +3
Query: 16 LGTTYSCVGVFINDRVEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVARNPTNTVFDA 75
LGT +C+ V+ + + + AND G+R+TP VAFT + +G +AK + N NTV +
Sbjct: 201 LGTCSACLAVYKDGKTSVAANDAGDRSTPCVVAFTACDAEVGASAKQGIVSNVKNTVCNV 380
Query: 76 KRLIGRKFNETVVQKDIKLWPFKV 99
KR++G F + V Q+ + P KV
Sbjct: 381 KRILGLTFEDPVTQEYLASSPVKV 452
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = +2
Query: 143 KQIKNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGL 191
K I++AV+ VP+ F+D QR A A + AG VLR+INE +AAA+AY L
Sbjct: 5 KGIQDAVLAVPSDFSDKQRAAASAAASKAGFKVLRLINECSAAALAYDL 151
>12271
Length = 1762
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +2
Query: 294 ADSEDFMMVISRPKFEELCLSMFKECIPPVEKVLKDSGMAKNQVHEVVLVGGSTRIPKVI 353
A EDF ++R K+ L + PV++VL S + ++ E++L+GG +R+PK+
Sbjct: 29 AGREDFSCKVTRDKYLHLIQDLLDRVTLPVQQVLTASQITWAEITEIILMGGGSRLPKIH 208
Query: 354 QLITEFFNGKEPNRSINPDE 373
+++ ++ KE +S+N DE
Sbjct: 209 EILLDYSGKKELGKSLNTDE 268
>13300
Length = 453
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Frame = +3
Query: 160 QRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKK---GQGEKNVLIFDLGGGTFDVSLL 216
+R+A A G+NVL+++ + A A+ YG+ ++ + + +D+G + +++
Sbjct: 3 ERRAIMTAADXVGINVLQLMTDSAAVALNYGVFRRKNFNTTAQYYMFYDMGATSTVATVV 182
Query: 217 T-----LDDGI-------FEVKATAGDTHLGGEDFDNKLVEFCAADF--LKKKNIDIREN 262
+ + +G +K D LGG + +L + A F KK++ + +N
Sbjct: 183 SYQVVKVKEGTRVESNPQLTIKGVGFDRTLGGLEMTLRLRDHLAKVFNGQKKRSFKLEDN 362
Query: 263 PRAMRRLRTQCERAKRILSSSAQATIEVDA 292
PRAM +L + ER K++LS+++ +V+
Sbjct: 363 PRAMAKLLKEAERVKKVLSANSDHKAQVEG 452
>13684
Length = 438
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = -3
Query: 16 LGTTYSCVGVFINDRVEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVARN 67
LGT +C+ V+ + + + AND G+R+TP VAFT + +G +AK + N
Sbjct: 157 LGTCSACLAVYKDGKTSVAANDAGDRSTPCVVAFTACDAEVGASAKQGIVSN 2
>03996
Length = 1105
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Frame = -2
Query: 310 ELCLSMFKECIPPVEKVLKDSGMAKNQVHEVVLVGGSTRIPKVIQLITEFFNGKEPNRSI 369
EL + P+E LK S + ++ E++L+GG +R+P+V + + +F + +SI
Sbjct: 1056 ELIKDLLARVTKPMEDALKVSEITMPEITEIILMGGGSRVPRVQEELLKFSGKSDLGKSI 877
Query: 370 NPDEXXXXXXXXXXXILTGSGSE----HIQDVLLLDVTPLSMGIE----------TAGQV 415
N DE L G G + H++D ++ P+++ E +A +
Sbjct: 876 NTDEAAALGAVYQAAYL-GKGFKVKTFHVRDA---NIYPINVEFEKQKSEEDSATSARTI 709
Query: 416 MTVLIPRNTTIPTKKSQVFTTYADN-----QPGVLIQVFEGERPMTKDNHLLGKFNLDGI 470
L R P +K F + + + G L + E E+ + LL +L+G+
Sbjct: 708 KRTLFGRMNPYPQRKVMTFNKHFKDFNFEVRYGDLDFIPEEEQK-SLSARLLSNVSLEGV 532
Query: 471 APAPRGVPQ------IEVSFDIDENGILNV 494
+ + ++ F +DE+GIL++
Sbjct: 531 ESXYGKLGEEAEYKGVKAHFRMDESGILHL 442
>34036
Length = 363
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +2
Query: 594 EAEEYSHKQKALEEVFNPIMMRVYQSTGG 622
E +EY KQK +E+V NPI+ ++YQ+ GG
Sbjct: 2 EKDEYDDKQKEIEKVCNPIITKLYQAAGG 88
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00047080__3824.m02946succinate_dehydrogenase,
_flavoprotein_subunit_containing_protein
(636 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27955 384 e-107
10406 31 1.4
>27955
Length = 2509
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/353 (56%), Positives = 243/353 (68%), Gaps = 18/353 (5%)
Frame = -3
Query: 302 EGGILVNSNGEAFMEKYAPTAKDLASRDVVSRAMTIEILEGRGVGPKKDHIFLQLHHLSP 361
EGG LVNS GE FME+YAP AKDLASRDVVSR+MTIEI EGRGVG KDH+FLQLHHL
Sbjct: 1907 EGGYLVNSEGERFMERYAPNAKDLASRDVVSRSMTIEIREGRGVGEDKDHVFLQLHHLPS 1728
Query: 362 ETLHQRLPGISETARIFAGVDVTKEPAPVVPTVHYNMGGVPTNWKTEVITQDKNGKDKIV 421
E L RLPGISETA IFAGVDVT++P PV+PTVHYNMGG PTN+K +VI ++G D++V
Sbjct: 1727 EVLKTRLPGISETAHIFAGVDVTRDPIPVLPTVHYNMGGTPTNYKGQVIRYSQSGGDEVV 1548
Query: 422 PGLLAAGENACASVHGANRLGANSLLDIVVFGRAAAKLVKEKLKPGTPHKDLPKNAGEQA 481
PGL AAGE+ACASVHGANRLGANSLLD+VVFGRA A + + KPG + +NAGE +
Sbjct: 1547 PGLYAAGESACASVHGANRLGANSLLDLVVFGRACANTIIAENKPGEAVGPIAQNAGEAS 1368
Query: 482 LARLDKYRFANGEYTTHHVRTAMQETMQRHAAVFRIEKLMAEGVQKLDHIYEQSKSLKTF 541
+A LD+ R+ANG T +R MQ+TMQ HA VFR M EG +K+D +Y++ + LK
Sbjct: 1367 VANLDRLRYANGSTPTADLRLDMQKTMQTHAGVFRDGPTMQEGCKKMDALYKKMEDLKVS 1188
Query: 542 DRGLVWNTDXXXXXXXXXXXXCSKQTLLAGLLRKESRGAHARDDFKERD----------- 590
DRGL+WN+D + QT+ + R ESRGAHAR+DF R
Sbjct: 1187 DRGLIWNSDLVETLELQNLMINAMQTIYSAEARTESRGAHAREDFTTRMDEFDYSKSTEG 1008
Query: 591 ------DKNWMKHSLTWIKDVNTGKTEVTYRDVINHTLDSEVTP-VPPAKRSY 636
D++W KH+L+++ D N+GK + YR VI+ TLD P V PA RSY
Sbjct: 1007 QKPKPFDQHWRKHTLSYV-DENSGKVTLEYRPVIDGTLDEVDCPNVAPAIRSY 852
Score = 226 bits (576), Expect(2) = 1e-84, Method: Compositional matrix adjust.
Identities = 104/149 (69%), Positives = 120/149 (80%)
Frame = -2
Query: 100 NMTEDDWKWHFYDTVKGSDWLGDQDAIQYMTREAPAAVLELESYGLPFSRTPEGKIYQRA 159
+M EDDW+WHFYDTVKGSDWLGDQDAI YM EAP AV+ELE+YG+PFSR GKIYQRA
Sbjct: 2508 HMEEDDWRWHFYDTVKGSDWLGDQDAIHYMCEEAPKAVIELENYGMPFSRLENGKIYQRA 2329
Query: 160 FGGQSLKFGKGGQARRTACAADRTGHAMLHTLFGRSLAYNCNFFIEYFVIDLIMDEEGAC 219
FGGQSL GKGGQA R ADRTGH++LHTL+GRSL Y+ N+FIEYF +DLIM E+G C
Sbjct: 2328 FGGQSLNRGKGGQAHRCCAVADRTGHSLLHTLYGRSLKYDTNYFIEYFALDLIM-EDGEC 2152
Query: 220 RGVICMSMADGSIHRIRAHYTVLAAGGYG 248
RGVI + + DGSIHR + T+LA GG G
Sbjct: 2151 RGVIALCLEDGSIHRFHSKNTILATGGTG 2065
Score = 106 bits (264), Expect(2) = 1e-84, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 57/80 (71%)
Frame = -1
Query: 246 GYGRSYLSCTAAHTCTGDGMALATRAGLPLEDPEFVQFHPTGIYGSGCLMTEGCRGEGGI 305
GYGR+Y SCT+AHTCTGDG A+ RAGLP ED EFVQFHPTGIYG+GCL+TEG RG GG
Sbjct: 2074 GYGRAYFSCTSAHTCTGDGTAMVNRAGLPNEDMEFVQFHPTGIYGAGCLITEGSRGRGGT 1895
Query: 306 LVNSNGEAFMEKYAPTAKDL 325
+ G PT + L
Sbjct: 1894 W*TARGRDSWRDTLPTPRTL 1835
>10406
Length = 1211
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 416 GKDKIVPGLLAAGENACASVHGANRLGANSLLDIVVFGRAAAK---LVKEKLKPGTPHKD 472
GK + V LL A A SV L D + GR AK ++++KL+ H
Sbjct: 957 GKKQAVCTLLKALSAAFLSVIKLQ------LKDFLPSGRYHAKDDPMLRDKLQ----HSQ 1106
Query: 473 LPKNAGEQALARLDKYRFANGEYTTHH 499
L GEQA LD RF T+HH
Sbjct: 1107 LTNLVGEQAFGDLDFSRFKRRNATSHH 1187
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00784570__3813.m01638Transketolase,
_C-terminal_domain_containing_protein
(1213 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26410 386 e-107
08961 163 4e-40
11173 139 6e-33
12789 69 8e-12
09611 32 1.6
14280 31 2.7
15314 30 4.1
>26410
Length = 1216
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/285 (63%), Positives = 221/285 (77%)
Frame = +1
Query: 71 LVQKHGPNRIVDTPISEMGFAGIAVGAAMYGLRPVVEFMTMNFAMQAIDQIINGAAKIRY 130
L +K+G R++DTPI+EMGFAGIAVGAAM GL+P+ EFMT NF+MQAIDQ+IN AAK Y
Sbjct: 1 LWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLKPICEFMTFNFSMQAIDQVINSAAKTFY 180
Query: 131 MSNGDLDTPIVFRGLNGPAAAVAAQHSQCFAAWYSSCPGLITISPYDVEDARGLLKAAIR 190
MS G + PIVFRG NG A VAAQHSQCFAAWYSSCPGL +SPY ED RGLLKAAIR
Sbjct: 181 MSAGQVPVPIVFRGPNGAALGVAAQHSQCFAAWYSSCPGLKVLSPYSSEDCRGLLKAAIR 360
Query: 191 DPNPVVFLENEIMYNVQFTVDDAVMDKDFVLPIGKAKVMREGTDVTIVSFSKPVKYCLEA 250
DPNPVV LENEIMY F V D + DFV PIGKAK+ REG+ VT+V+ S V C+EA
Sbjct: 361 DPNPVVVLENEIMYGTAFDVSDEALSPDFVAPIGKAKIEREGSHVTLVAHSIGVGRCVEA 540
Query: 251 AELLAKEGISCEVINLRTIRPLDRKAIVDSVKKTHRLVTVEEGWPQCGVGSEICALMMES 310
A+ LA +G+ CE++NLR++RP+D + I+ SV KT+ LVTVE GWPQCG+GSEI A +MES
Sbjct: 541 AKELAGQGVECEIVNLRSLRPMDDETIIKSVMKTNHLVTVEGGWPQCGIGSEITARIMES 720
Query: 311 SAFDFLDAPVERVAGLDIPLAYAPNLEAMSLPNAQHVANAVRKTL 355
AF++LDAPV RV G D+P+ Y +LE +LP + +V AV+K+L
Sbjct: 721 PAFNYLDAPVYRVTGADVPMPYTKSLEERALPQSFNVITAVKKSL 855
>08961
Length = 2948
Score = 163 bits (413), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 150/285 (52%)
Frame = -1
Query: 926 INLRERYENYQGMKSFKTSEWDKYENLPDPYEKVYVFKNYIRTKNTAFLHAEEQAFAYAG 985
+ RER+ Y+G+ SF+TS W +E LP Y++++ + K F AE G
Sbjct: 1385 VPARERFAKYRGLSSFRTSPWPVHEELPPEYQRIFRPGDMKALKKRVF-KAELTNSVTMG 1209
Query: 986 FYIKIYVKGFPLDKLSAHPKEKALILSTLLKHERKMTVLHARVKRNIEYEDKAVESKQNY 1045
YI +++K P + + ++L LL E+ M+V+H VKR+ D + SK
Sbjct: 1208 QYITVHIKNVPKAYMETYSPGTPMVLFGLLPFEQLMSVVHIAVKRDRACHD-TIRSKAPL 1032
Query: 1046 VIHMGFRRAVVNSIFSKIYNNNDKTKYVKKVKELNQFYMASFXXXXXXXXXXXXMFNEGG 1105
+GFRR V +FS++ DK K +++ + + S +F +
Sbjct: 1031 TFQLGFRRFTVCPVFSQL-KKGDKFK-MERFMPYDDMIVMSMFAPITIGNCPALVFRQNA 858
Query: 1106 DILNADFCLSGQVMKSDPLQVVLKRIILTGYPFKIHKRKAVCRLMFFNPLDIKYFQPVEL 1165
+G + +P +VVLKR +L+G FK+ KRK+V R MFFN DI +F+ +EL
Sbjct: 857 -FXEEHLVGAGSLHSVNPDRVVLKRAVLSGDMFKMGKRKSVVRFMFFNRDDIMWFKSIEL 681
Query: 1166 KTKLGLRGKILESLGTHGLMKCLFSGFVKPHDTICMHLYKRVFPK 1210
+TKL RG+IL +GTHG MKC F+G K D + M LYKRV+PK
Sbjct: 680 RTKLNRRGRILVPVGTHGHMKCHFNGQAKSQDVVLMMLYKRVYPK 546
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 6/225 (2%)
Frame = -2
Query: 514 IEMMDKTTASNQDDGKMRFKFPYYQFFAHPTYFPGLIKENFIIIEGDRVFENIMDFCKIA 573
+E M+ + D G + P +F +YF + G V +++MD K+A
Sbjct: 2518 VEHMEGGLVTKNDQGIVHLSVP--RFKQRISYF----------MPGTNV-QSVMDAAKVA 2378
Query: 574 DIVCPVLSCKDANLEKLNLDPYNNANAFDEWGYKILSALRLQGLPSTISVLQDVNTIPQG 633
D V V+S D +DP G L L QG+ S++ V + ++ IPQ
Sbjct: 2377 DSVLFVISPDDV------IDPQ---------GDYCLKCLMGQGVSSSLFVCRGLDQIPQK 2243
Query: 634 KQKDVKKLFQRYFASEFED-HFVSIENEQSIFXXXXXXXXXXXXPYDWKEQRGYMLADEV 692
K + KK+ + D S++ EQ P ++E R +++A+ +
Sbjct: 2242 KLAETKKVISKEIEQRVPDAKLHSLDTEQDALLVIRKLAEAKTKPVHYRELRPHIIAESL 2063
Query: 693 -----TVNPTNGVVEITGFLRGHCINANQLIHITGYDDYEIQKIE 732
+ G ++++G+LRG ++A++L+HI G+ +++ +++
Sbjct: 2062 RFEAESAEALEGTLKVSGYLRGTDLSADRLLHIVGWGTFQVAQVD 1928
>11173
Length = 641
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 87/129 (67%)
Frame = -3
Query: 227 KVMREGTDVTIVSFSKPVKYCLEAAELLAKEGISCEVINLRTIRPLDRKAIVDSVKKTHR 286
K+M+ G D+TIV+ SK V+ L++A LAK+GI EVINLR+IRPLD I SV+KTH
Sbjct: 639 KIMKAGKDITIVAHSKAVETALQSAAELAKKGIEAEVINLRSIRPLDMATIFASVRKTHH 460
Query: 287 LVTVEEGWPQCGVGSEICALMMESSAFDFLDAPVERVAGLDIPLAYAPNLEAMSLPNAQH 346
L+TVE GWPQ GVG+EICA ME F LDAPV R G+D+P+ Y LE ++P +
Sbjct: 459 LITVENGWPQHGVGAEICARFMEDQHFFELDAPVWRCCGVDVPMPYTKTLELNAIPQEKD 280
Query: 347 VANAVRKTL 355
V A K L
Sbjct: 279 VTAAALKVL 253
>12789
Length = 2095
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 147/338 (43%), Gaps = 20/338 (5%)
Frame = +3
Query: 12 LSPLNKTLAFSNKFHFSRTLTVREAINAALDEEVARDEKVFIIGEEVANYQGAYKVTKGL 71
++ N TL+ + + + R A AL + +++V + +V N A K +
Sbjct: 969 INTTNITLSEXPAYTMGQLVATRAAYGTALVKVGKTNDRVISLDGDVKNSTFASKFKEAY 1148
Query: 72 VQKHGPNRIVDTPISEMGFAGIAVGAAMYGLRPVVEFMTM--NFAMQAIDQIINGAAKIR 129
P+R V+ I+E G+A+G R V F++ F +A DQI ++
Sbjct: 1149 -----PDRFVECFIAEQNLVGVAIGCETR--RRTVPFVSTFAAFLSRAFDQI-----RMA 1292
Query: 130 YMSNGDLDTPIVFRGL----NGPAAAVAAQHSQCFAAWYSSCPGLITISPYDV------- 178
+S +++ G+ +GP+ Q + A + S P P D
Sbjct: 1293 AISQSNVNFCGSHAGISIGEDGPS-----QMALEDIAMFRSIPDCTVFYPSDAVSTERAV 1457
Query: 179 ---EDARGLLKAAIRDPN-PVVFLENEIMYNVQFTVDDAVMDKDFVLPIGKAKVMREGTD 234
+ RG+ PN PV++ +E FTV GKAKV+R+
Sbjct: 1458 ELAANTRGMCFIRTSRPNVPVIYQPSE-----TFTV-------------GKAKVVRQSAS 1583
Query: 235 --VTIVSFSKPVKYCLEAAELLAKEGISCEVINLRTIRPLDRKAIVDSVKKTH-RLVTVE 291
VT++ + ++AA+ LA G++ +I+ TI+PLD I+ + + T R++TVE
Sbjct: 1584 DQVTVIGACVTLAEAMKAADELAGSGVNIRIIDPFTIKPLDADTIISNARATSGRIITVE 1763
Query: 292 EGWPQCGVGSEICALMMESSAFDFLDAPVERVAGLDIP 329
+ + + G+G +C+ + E D V R+A +IP
Sbjct: 1764 DHYMEGGIGEAVCSAVSECK-----DITVRRLAVKEIP 1862
>09611
Length = 1991
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 529 KMRFKFPYYQFFAHPTYFPGLIKENFIIIE 558
+ RF+F ++Q FA FPGL++ + +E
Sbjct: 1518 QQRFRFWFFQSFATKXIFPGLLRRTVLTVE 1429
>14280
Length = 1075
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 269 IRPLDRKAIVDSVKKTHRLVTVEEGW 294
IR L K ++++V+ +R TVEEGW
Sbjct: 990 IRELKSKRLIETVRHRYRASTVEEGW 1067
>15314
Length = 385
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 865 DDENQQKCE-GEQMKKQIINFAHSLTYFF 892
D ENQ + + GEQM +I HS+TYFF
Sbjct: 171 DQENQNQTK*GEQMSHFLIITMHSMTYFF 85
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00979780__183.m00027Transketolase,
_pyridine_binding_domain_containing_protein
(424 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26410 381 e-106
11173 142 2e-34
12789 71 8e-13
08719 30 2.7
14280 28 7.0
>26410
Length = 1216
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/285 (63%), Positives = 219/285 (76%)
Frame = +1
Query: 136 LLEKFGPDRIVDTPISEIGFAGIGVGAAMYGLKPIIEFMTMNFAMQAIDHIINSAAKLRY 195
L +K+G R++DTPI+E+GFAGI VGAAM GLKPI EFMT NF+MQAID +INSAAK Y
Sbjct: 1 LWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLKPICEFMTFNFSMQAIDQVINSAAKTFY 180
Query: 196 MSNGDLHTQIVFRGLNGPAAAVAAQHSQCFAAWYSSCPGLIVIAPYDVEDARGLLKAAIR 255
MS G + IVFRG NG A VAAQHSQCFAAWYSSCPGL V++PY ED RGLLKAAIR
Sbjct: 181 MSAGQVPVPIVFRGPNGAALGVAAQHSQCFAAWYSSCPGLKVLSPYSSEDCRGLLKAAIR 360
Query: 256 DPNPVVFLENEIMYGKTFTVPESVTKEDFVLPIGKAKIMREGTDVTLVSFSKPVGMCLEA 315
DPNPVV LENEIMYG F V + DFV PIGKAKI REG+ VTLV+ S VG C+EA
Sbjct: 361 DPNPVVVLENEIMYGTAFDVSDEALSPDFVAPIGKAKIEREGSHVTLVAHSIGVGRCVEA 540
Query: 316 AEELQKQGISAEVINLRTIRPLDRQTIINSIKKTHRIVTVEEGWPQNGIGAEISAMIFES 375
A+EL QG+ E++NLR++RP+D +TII S+ KT+ +VTVE GWPQ GIG+EI+A I ES
Sbjct: 541 AKELAGQGVECEIVNLRSLRPMDDETIIKSVMKTNHLVTVEGGWPQCGIGSEITARIMES 720
Query: 376 SAFNYIDAPLERVCGLDIPLAYAPNLEAMSLPSVAHIVNAAKKTL 420
AFNY+DAP+ RV G D+P+ Y +LE +LP +++ A KK+L
Sbjct: 721 PAFNYLDAPVYRVTGADVPMPYTKSLEERALPQSFNVITAVKKSL 855
>11173
Length = 641
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 89/131 (67%)
Frame = -3
Query: 292 KIMREGTDVTLVSFSKPVGMCLEAAEELQKQGISAEVINLRTIRPLDRQTIINSIKKTHR 351
KIM+ G D+T+V+ SK V L++A EL K+GI AEVINLR+IRPLD TI S++KTH
Sbjct: 639 KIMKAGKDITIVAHSKAVETALQSAAELAKKGIEAEVINLRSIRPLDMATIFASVRKTHH 460
Query: 352 IVTVEEGWPQNGIGAEISAMIFESSAFNYIDAPLERVCGLDIPLAYAPNLEAMSLPSVAH 411
++TVE GWPQ+G+GAEI A E F +DAP+ R CG+D+P+ Y LE ++P
Sbjct: 459 LITVENGWPQHGVGAEICARFMEDQHFFELDAPVWRCCGVDVPMPYTKTLELNAIPQEKD 280
Query: 412 IVNAAKKTLVG 422
+ AA K L G
Sbjct: 279 VTAAALKVLGG 247
>12789
Length = 2095
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 147/344 (42%), Gaps = 20/344 (5%)
Frame = +3
Query: 51 TIKQTNKQIFSITLPPIKDATYFLQRRKPSIKFTHGQKQEEKMVSM----TVRDALQSAM 106
T + NK IT PP+ D+ + P I T+ E +M R A +A+
Sbjct: 900 TDQLANKGHHGIT-PPVPDS------KAPVINTTNITLSEXPAYTMGQLVATRAAYGTAL 1058
Query: 107 ADEIARDPQVFLMGEEVANYHGAYKVSKGLLEKFGPDRIVDTPISEIGFAGIGVGAAMYG 166
+ +V + +V N A K + PDR V+ I+E G+ +G
Sbjct: 1059 VKVGKTNDRVISLDGDVKNSTFASKFKEAY-----PDRFVECFIAEQNLVGVAIGCETR- 1220
Query: 167 LKPIIEFMTM--NFAMQAIDHIINSAAKLRYMSNGDLHTQIVFRGLNGPAAAVAAQHSQC 224
+ + F++ F +A D I +A ++ H I G +GP+ Q +
Sbjct: 1221 -RRTVPFVSTFAAFLSRAFDQIRMAAISQSNVNFCGSHAGISI-GEDGPS-----QMALE 1379
Query: 225 FAAWYSSCPGLIVIAPYDV----------EDARGLLKAAIRDPN-PVVFLENEIMYGKTF 273
A + S P V P D + RG+ PN PV++ +E TF
Sbjct: 1380 DIAMFRSIPDCTVFYPSDAVSTERAVELAANTRGMCFIRTSRPNVPVIYQPSE-----TF 1544
Query: 274 TVPESVTKEDFVLPIGKAKIMREGTD--VTLVSFSKPVGMCLEAAEELQKQGISAEVINL 331
TV GKAK++R+ VT++ + ++AA+EL G++ +I+
Sbjct: 1545 TV-------------GKAKVVRQSASDQVTVIGACVTLAEAMKAADELAGSGVNIRIIDP 1685
Query: 332 RTIRPLDRQTIINSIKKTH-RIVTVEEGWPQNGIGAEISAMIFE 374
TI+PLD TII++ + T RI+TVE+ + + GIG + + + E
Sbjct: 1686 FTIKPLDADTIISNARATSGRIITVEDHYMEGGIGEAVCSAVSE 1817
>08719
Length = 557
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 48 NKQTIKQTNKQIF--SITLPPIKDATYFLQRRKPSI 81
NKQT KQTNKQ F +++LPP +L R K ++
Sbjct: 415 NKQTNKQTNKQTF*DNVSLPPS-----YLHRTKANL 507
>14280
Length = 1075
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 334 IRPLDRQTIINSIKKTHRIVTVEEGWP 360
IR L + +I +++ +R TVEEGW
Sbjct: 990 IRELKSKRLIETVRHRYRASTVEEGWA 1070
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00585260__3675.m00076ATP_synthase_beta_chain,
_mitochondrial_precursor,_putative
(497 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04005 352 1e-97
00095 270 1e-72
16215 82 1e-17
00590 83 3e-16
00880 65 6e-11
37643 59 5e-09
>04005
Length = 913
Score = 352 bits (904), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 172/232 (74%), Positives = 202/232 (87%)
Frame = +1
Query: 266 EGKDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDLGALQERITTTQKGSITS 325
EG+DVLLF+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTT+KGSITS
Sbjct: 1 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 180
Query: 326 VQAIYVPADDLTDPAPATTFAHLDATTVLNRGLTELGIYPAVDPLDSTSRMLDPITIGEE 385
VQAIYVPADDLTDPAPATTFAHLDATTVL+RG+ ELGIYPAVDPLDSTSR+LDP +GE
Sbjct: 181 VQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRILDPNIVGEH 360
Query: 386 HYTVARGVQKLLQDYKSLQDIIAILGVDDLSEEDKLVVARARKVQKFLSQPFFMSEVFSG 445
HY +AR VQK+LQD+KSLQDIIAILG+D+LSEEDKL V+RARK+Q+FLSQPF ++EVF+G
Sbjct: 361 HYKIARAVQKILQDFKSLQDIIAILGMDELSEEDKLTVSRARKMQRFLSQPFQVAEVFTG 540
Query: 446 IPGRFVNLKQNIASFKALLEGAGDEYPESCFYMKGDLEESLAAGRADALKSK 497
G++V+LK I+ F+ +L G D PE FYM G +EE LA +A+ L S+
Sbjct: 541 SEGKYVHLKDTISGFEKILAGDLDNIPEVAFYMVGGIEEVLA--KAERLASE 690
>00095
Length = 572
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 132/177 (74%), Positives = 149/177 (84%)
Frame = -2
Query: 213 NDLYHEMMDSKVISVKEGESRCALIFGQMNEPPGARARVGLTGLTVAEYFRDEEGKDVLL 272
NDLYHEM+ S+VIS+ + S+ +L++GQMNEP R G FRDEEG+DVLL
Sbjct: 529 NDLYHEMITSRVISLDDDSSKVSLVYGQMNEPQVHVPR-GADRTDGGRXFRDEEGQDVLL 353
Query: 273 FVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDLGALQERITTTQKGSITSVQAIYVP 332
F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTT KGSITSVQAIYVP
Sbjct: 352 FIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTNKGSITSVQAIYVP 173
Query: 333 ADDLTDPAPATTFAHLDATTVLNRGLTELGIYPAVDPLDSTSRMLDPITIGEEHYTV 389
ADDLTDPAPATTFAHLDATTVL+RG+ ELGIYPAVDPLDSTSR+LDP +GE HY +
Sbjct: 172 ADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRILDPNIVGEHHYKI 2
>16215
Length = 1251
Score = 82.4 bits (202), Expect(2) = 1e-17, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 7/199 (3%)
Frame = -3
Query: 123 QRGPIKAAKLYPIHRDAPSFTDQATSAEILVTGIKVVDLLAPYARGGKIGLFGGAGVGKT 182
Q+ +++P+ + P +++ + L+TG +V+D L P +GG + G G GKT
Sbjct: 775 QKSQYSMLQVWPVRQMRP-VSEKLAANYPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKT 599
Query: 183 VLIQELINNVAKH-HGGYSVFAGVGERTREGNDLYHEMMDSKVISVK-EGE-----SRCA 235
V+ Q L +K+ + ++ G GER GN++ + D ++++ EG+ R A
Sbjct: 598 VISQSL----SKYSNSDVIIYVGCGER---GNEMSEVLRDFPELTMEVEGKPESIMKRTA 440
Query: 236 LIFGQMNEPPGARARVGLTGLTVAEYFRDEEGKDVLLFVDNIFRFTQACSEVSALLGRIP 295
L+ N P AR TG+T++EYFRD G +V + D+ R+ +A E+S L +P
Sbjct: 439 LVANTSNMPVAAREASIYTGITLSEYFRD-MGLNVSMMADSTSRWAEALREISGRLAEMP 263
Query: 296 SAVGYQPTLATDLGALQER 314
+ GY L L + ER
Sbjct: 262 ADSGYPAYLGARLASFYER 206
Score = 25.4 bits (54), Expect(2) = 1e-17, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -2
Query: 319 QKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLNRGLTELGIYP 365
++GS++ V A+ P D +DP + T + L++ L + +P
Sbjct: 173 REGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 33
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = -3
Query: 83 DSTEGLVRGQPVVDTGLPISVPVGPGTLGRIMNVIGEPIDQRGPIKAAKLYPIHRDAPSF 142
+ T G+ G PV+ TG P+SV +GPG +G I + I P++ + + P + P+
Sbjct: 1168 EETSGVTVGDPVLRTGKPLSVQLGPGIMGSIFDGIQRPLETICDLTQSIYIPKGINTPAL 989
Query: 143 TDQATSAEILVTGIKV 158
D I I+V
Sbjct: 988 DDHKQWEFIPSKDIRV 941
>00590
Length = 2486
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 20/296 (6%)
Frame = +1
Query: 160 DLLAPYARGGKIGLFGGAGVGKTVLIQELINN-----------VAKHHGGYS-VFAGVGE 207
D + ARG KI +F AG+ + ++ + H ++ VFA +G
Sbjct: 1 DTMNSIARGQKIPIFSAAGLPHNEIAAQICRQGGLVKLPGKSVLDDHDDNFAIVFAAMGV 180
Query: 208 RTREGNDLYHEMMDSKVISVKEGESRCALIFGQMNEPPGARARVGLTGLTVAEYFRDEEG 267
+ ++ + E+ C L N+P R LT AEY +
Sbjct: 181 NMEIARFFKQDFEENGSM-----ENVC-LFLNLANDPTIERIITPRIALTTAEYMAYQCE 342
Query: 268 KDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDLGALQERITTTQ--KGSITS 325
K VL+ + ++ + +A EVSA +P G+ + TDL + ER + GSIT
Sbjct: 343 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQ 522
Query: 326 VQAIYVPADDLTDPAPATTFAHLDATTVLNRGLTELGIYPAVDPLDSTSRMLDPITIG-- 383
+ + +P DD+T P P T + ++R L IYP ++ L S SR++ IG
Sbjct: 523 IPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKS-AIGEG 699
Query: 384 ---EEHYTVARGVQKLLQDYKSLQDIIAILGVDDLSEEDKLVVARARKVQK-FLSQ 435
E+H V+ + K +Q + A++G + L+ ED L + K +K F+SQ
Sbjct: 700 MTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPEDLLYLEFLTKFEKNFISQ 867
>00880
Length = 2381
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Frame = -1
Query: 91 GQPVVDTGLPISVPVGPGTLGRIMNVIGEPIDQRGPIKAAKLYPIHRDAPSFTDQATSAE 150
G V TG + VPVG LGR+++ +G PID +GP+ + + AP + + E
Sbjct: 1958 GDIVKRTGAIVDVPVGKDLLGRVVDALGNPIDGKGPVGGGERQRVGVKAPGIIPRTSVKE 1779
Query: 151 ILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKHHGG-------YSVFA 203
+ TGIK VD L P RG + + G GKT + + I N + + G Y ++
Sbjct: 1778 PMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAVAVDTIINQKRLNDGNNEKQKLYCIYV 1599
Query: 204 GVGERTREGNDLYHEMMDS 222
+G++ L + D+
Sbjct: 1598 AIGQKRSTVAQLVKRLTDA 1542
>37643
Length = 1463
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 11/249 (4%)
Frame = -3
Query: 139 APSFTDQATSAEILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKHHGG 198
AP + + E + TGIK VD L P RG + + G GKT + + I N + + G
Sbjct: 1428 APGIIPRTSVKEPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAVAVDTIINQKRLNDG 1249
Query: 199 -------YSVFAGVGERTREGNDLYHEMMDSKVISVKEGESRCALIFGQMNEPPGARARV 251
Y ++ +G++ L + D+ + ++ ++ +
Sbjct: 1248 NNEKQKLYCIYVAIGQKRSTVAQLVKRLTDADAMKY------TIVVSATASDAAPLQYLA 1087
Query: 252 GLTGLTVAEYFRDEEGKDVLLFVDNIFRFTQACSEVSALLGRIPSAVGYQPTLATDLGAL 311
+G + E+FRD G L+ D++ + A ++S LL R P Y + L
Sbjct: 1086 PYSGCAMGEFFRD-NGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 910
Query: 312 QERITTTQK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLNRGLTELGIYPAV 367
ER GS+T++ I A D++ P + D L L GI PA+
Sbjct: 909 LERAAKMNDDNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 730
Query: 368 DPLDSTSRM 376
+ S SR+
Sbjct: 729 NVGLSVSRV 703
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00723390__3671.m00048dehydrogenase,
_isocitrate/isopropylmalate_family_protein
(636 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12535 352 4e-97
23218 257 8e-69
18243 52 5e-07
01970 35 0.074
01797 33 0.27
07927 31 1.5
10210 31 1.9
>12535
Length = 2160
Score = 352 bits (902), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 164/302 (54%), Positives = 227/302 (75%)
Frame = +1
Query: 333 PIDWEHHEIYTKPINEAGDLIKEESLNAVINYKWGLKGPFATPIGKGYRSLNVTMRKKLN 392
PI WE ++ + + ++ +++ K GLKGP ATPIGKG++SLN+ +RK +
Sbjct: 1 PIVWE--DVGCNSVKSXNFHLPQKIFDSMAETKIGLKGPLATPIGKGHKSLNLALRKAFS 174
Query: 393 LFANVRPCRSLAGVKTPYSNVDLVTIRENTEGEYSGLEHAVVPGVVENLKIISQPACENI 452
L+ANVRPC+S+ G KTPY +V+LVTIRENTEGEYSG+EH +V GVV+++K+I++ A +
Sbjct: 175 LYANVRPCKSIEGYKTPYDDVNLVTIRENTEGEYSGIEHTIVDGVVQSIKLITEIASRRV 354
Query: 453 ARYAFEFARKNNRKKVVACHKAGVMKKGDGLFINTCKKISSEYPEIEYTEEQIDTVCMKL 512
A YAF+FAR+NNR V A HKA +M+ DGLF+ C+ ++S+ +I++TE +DTVC+ +
Sbjct: 355 AEYAFKFARENNRSTVTAVHKANIMRMSDGLFLKCCRDVASKNKDIKFTESYLDTVCLNM 534
Query: 513 SKNPEVFDVMVMPNLYGDIVSDLCAGLIGGLGLTASGNISHTCAVYEAVHGTAPDIAGLN 572
++P FDV+VMPNLYGDI+SDLCAGLIGGLG+T SGNI A++E+VHGTAPDIAG +
Sbjct: 535 VQDPTQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGEDGAIFESVHGTAPDIAGQD 714
Query: 573 KANPTALLLSGVMMLKAMGLQKEGFAIEEAVIKTLSEGKFLTGDLGGKATTTDYTKAVIG 632
KANPTALLLS VMML+ M L + G IE+A + T+ EGK LTGDLGG +T +++T+ +
Sbjct: 715 KANPTALLLSAVMMLRHMQLGEYGDRIEKAALDTIREGKVLTGDLGGSSTCSEFTQEICR 894
Query: 633 HI 634
I
Sbjct: 895 RI 900
>23218
Length = 1332
Score = 257 bits (657), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 129/283 (45%), Positives = 184/283 (65%), Gaps = 3/283 (1%)
Frame = +3
Query: 355 EESLNAVINYKWGLKGPFATPIGKG-YRSLNVTMRKKLNLFANVRPCRSLAGV-KTPYSN 412
SL + + W LKG T +RS+NV +R KL+L+AN+ CR+ GV + + +
Sbjct: 27 RRSLVSAEKWTWTLKGNIETMFDDASFRSMNVALRTKLDLWANIVWCRTFKGVFSSRHDD 206
Query: 413 VDLVTIRENTEGEYSGLEHAVVPGVVENLKIISQPACENIARYAFEFARKNNRKKVVACH 472
VD++ IRENTEGEYS LEH VPGVVE+LKII+ E IARYAF+FA +N RKKV A H
Sbjct: 207 VDIILIRENTEGEYSSLEHENVPGVVESLKIITAEKSERIARYAFDFAARNGRKKVTAIH 386
Query: 473 KAGVMKKGDGLFINTCKKISSEYPEIEYTEEQIDTVCMKLSKNPEVFDVMVMPNLYGDIV 532
KA +MK DGLF+ +C+K+S ++P+IE+T+ ID M++ P+ FDV+VMPNLYG+I+
Sbjct: 387 KANIMKLADGLFLESCRKVSQDFPDIEFTDMIIDNASMQMVSRPQQFDVLVMPNLYGNIL 566
Query: 533 SDLCAGLIGGLGLTASGNISHTCAVYEA-VHGTAPDIAGLNKANPTALLLSGVMMLKAMG 591
S++ AGL+GG GL N+ + AV+E+ + + G N ANPT +LL+ ML +G
Sbjct: 567 SNIAAGLVGGAGLVPGMNVGDSYAVFESGTRNSGRSMKGKNIANPTGMLLASCDMLDYLG 746
Query: 592 LQKEGFAIEEAVIKTLSEGKFLTGDLGGKATTTDYTKAVIGHI 634
I E+V+ ++ + T D+GG+ATT D +A+I I
Sbjct: 747 HHNHSTLIRESVMSVINNIQNQTPDMGGQATTVDVVQAIIEDI 875
>18243
Length = 465
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +1
Query: 305 HKVVLFPGHGIGPEISQAVCDIFAAAKVPIDWEHHEIYTKPINEAGDLIKEESLNAVINY 364
H V L PG GIGPE+ V D+F A PID+E ++ P ++ D + ++ +V
Sbjct: 202 HTVTLMPGDGIGPEMMSYVKDVFRVAGAPIDFETLQL--DPTDDNYDDL-HNAIQSVKRN 372
Query: 365 KWGLKGPFATPIGK-GYRSLNVTMRKKLNL 393
GLKG T + + +S NV MR L+L
Sbjct: 373 GCGLKGNIETQMNRPDIKSRNVEMRNALDL 462
>01970
Length = 2861
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 22/194 (11%)
Frame = -1
Query: 448 ACENIARYAFEFARKNNRKKVVACHKAGVMKKGDGLFINTCKKI-SSEYPE------IEY 500
+ + A +F++A + ++ K ++K+ DG F + ++I EY I Y
Sbjct: 2318 SIRDFAHASFQYALMKSWPLYMST-KNTILKRYDGRFKDIFQEIFDKEYKPKFDKQGIWY 2142
Query: 501 TEEQIDTVCMKLSKNPEVFDVMVMPNLYGDIVSDLCAGLIGGLGLTASGNISHTCAVY-- 558
ID + + K+ F V N GD+ SD+ A G LGL S +
Sbjct: 2141 EHRLIDDMVAQALKSSGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTIEA 1965
Query: 559 EAVHGTAP------DIAGLNKANPTALLLSGVMMLKAMG-------LQKEGFAIEEAVIK 605
EA HGT NP A + + L+ G LQ+ +E+A +
Sbjct: 1964 EAAHGTVTRHYREHQKGNPTSTNPIASIFAWTRGLEHRGKLDGNKDLQRFAQVMEKACVD 1785
Query: 606 TLSEGKFLTGDLGG 619
+ GK +T DL G
Sbjct: 1784 CVDSGK-MTKDLAG 1746
>01797
Length = 1448
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Frame = -3
Query: 165 PIKNNLHEIIAVENYAFLDVLIPDYDMMNAKRFCNFYTPKKLIDSNQFIYEM-------- 216
P++NNLHE+ +A L+ L+PD NA F ++ + +D+NQ + +
Sbjct: 1050 PLQNNLHEL-----WALLNFLLPDV-FNNADDFDAWFNTENCLDNNQMVERLHNVLRPFL 889
Query: 217 --KIQAFPEQYDIQEVQSPLIIGIT 239
+I+A E+ + + ++ + +G++
Sbjct: 888 LRRIKADVEKKLLPKKETKIFVGLS 814
>07927
Length = 1131
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = -2
Query: 366 WGLKGPF-----ATPIG--KGYRSLNVTMRKKLNLFANVRPCRSLAGVKTPYSNVDLVTI 418
WG K P A P+ + S ++ + L F+++ PCR+ K P +++ I
Sbjct: 734 WGAKSPRPPQQGAAPVPHLRPSSS*TTSLFRFLGFFSSLHPCRAQQAAKIPRCRIEIDII 555
Query: 419 REN 421
RE+
Sbjct: 554 REH 546
>10210
Length = 321
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 319 ISQAVCDIFAAAKVPIDWEHHEIYTKPINE 348
+S+ +C IF VP+ WEHH + +P+N+
Sbjct: 77 VSRTLC-IF----VPLVWEHHRVIMRPVNQ 3
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00088050__3836.m02121Carboxyl_transferase_domain_containing_
protein
(575 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
15064 246 1e-90
26464 137 1e-32
25795 72 8e-13
13605 34 0.17
08008 28 6.9
27198 28 9.8
>15064
Length = 908
Score = 246 bits (627), Expect(3) = 1e-90, Method: Compositional matrix adjust.
Identities = 117/195 (60%), Positives = 145/195 (74%)
Frame = +1
Query: 303 VKNLKTPEFNFDLSNVEAPLYDPVELNAILSPDLKKSVDSRHVIARIVDGSKFQEFKKEY 362
+ +K P+ + + E PLYD E+ I+ +LKK+ D R VIAR+VDGS+F EFK Y
Sbjct: 268 LNRVKDPQVSIETP--EEPLYDADEIYGIVGDNLKKTFDVREVIARVVDGSRFDEFKAMY 441
Query: 363 GSTLVTGFAKLYNQEVGIVANNGVLFSESALKGAHFIELCSQRNIPLIFLQNITGFMVGS 422
G TLVTGFA+L+ VGI+ NNGVLFSESA+KG HFIELCSQR IPLIFLQNITGFMVG
Sbjct: 442 GETLVTGFARLWGYPVGIIGNNGVLFSESAMKGTHFIELCSQRGIPLIFLQNITGFMVGR 621
Query: 423 KYESEGIAKHGAKMVNAVSTSQVPKXXXXXXXXXXAGNYGMCGRAYSPNYLFSWPISKIS 482
+ E+ GIAKHGAKMV AV+ ++VPK AGNYGMCGRAY P +++ WP ++IS
Sbjct: 622 EAEAGGIAKHGAKMVTAVACAKVPKLTLIIGGSYGAGNYGMCGRAYGPRFMYMWPNARIS 801
Query: 483 VMGGEQAAGVMLEIE 497
VMGGEQAA V+ +I+
Sbjct: 802 VMGGEQAANVLAQIQ 846
Score = 70.9 bits (172), Expect(3) = 1e-90, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = +2
Query: 218 IPQIALVLGSCTAGGAYVPAMSDENVIVKGNGTVFLGGPPLVKAATG 264
IPQ+A+VLG GAY PAM+DE++IV+ GT+FLGGPPLVKAATG
Sbjct: 2 IPQVAVVLGKLYGRGAYXPAMADESIIVRKQGTIFLGGPPLVKAATG 142
Score = 57.4 bits (137), Expect(3) = 1e-90, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +3
Query: 260 KAATGEIVSAEDLGGADVHCKVSGLTDHYAHDELEALRIGRSIVKN 305
K GE VSAEDLGGAD+HC SG+TD+YA D+ AL + R +VK
Sbjct: 129 KQPQGEEVSAEDLGGADLHCGRSGVTDYYAKDDAHALHLARRVVKK 266
>26464
Length = 412
Score = 137 bits (345), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/142 (53%), Positives = 91/142 (64%), Gaps = 6/142 (4%)
Frame = +1
Query: 245 VKGNGTVFLGGPPLVKAATGEIVSAEDLGGADVHCKVSGLTDHYAHDELEALRIGRSIVK 304
V NGTVF+GGPPLVKAA GEIVS+E+LGGA VHC VSG TD++A DE A R IV
Sbjct: 1 VHRNGTVFVGGPPLVKAALGEIVSSEELGGATVHCTVSGSTDYFAQDEDSAFETCRDIVS 180
Query: 305 NLKTPEFNFDLSNVEA------PLYDPVELNAILSPDLKKSVDSRHVIARIVDGSKFQEF 358
L N +V+ PLYDP EL +++ D ++D VIAR+VDGS F EF
Sbjct: 181 TL-----NVHHEDVKGRLPPRLPLYDPAELPSLIPRDDLHTLDIHQVIARLVDGSAFHEF 345
Query: 359 KKEYGSTLVTGFAKLYNQEVGI 380
K+ YG +LVTGFA L VGI
Sbjct: 346 KQLYGPSLVTGFAHLDGHLVGI 411
>25795
Length = 663
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%)
Frame = +1
Query: 391 SALKGAHFIELCSQRNIPLIFLQNITGFMVGSKYESEGIAKHGAKMVNAVSTSQVPKXXX 450
S++KGA F+ C NIPLI ++ GF+ G+ E GI +HGAK++ A + + VPK
Sbjct: 16 SSVKGARFVRFCDAFNIPLITFVDVPGFLPGTSQEYGGIIRHGAKLLYAFAEATVPKITI 195
Query: 451 XXXXXXXAGNYGMCGRAYSPNYLFSWPISKISVMGGEQAAGVMLEIEXXXXXXXXXDLNH 510
M + + ++WP ++++VMG + A ++ D
Sbjct: 196 ITRKAYGGAYDVMSSKHLRGDVNYAWPTAEVAVMGAKGAVSIIFR---------GSDNQA 348
Query: 511 EELEAMRQKFVQAYEKQASIYHSSSRLWDDGVILPEQTREXXXXXXXXXXANKQIQPSK 569
++ E KF A+ + ++ R + D +I P TR +Q P K
Sbjct: 349 KQEEEYVDKF-------ANPFPAAVRGFVDDIIEPRTTRMRINRDLSILTCKRQSNPWK 504
>13605
Length = 1546
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 28/66 (42%)
Frame = -1
Query: 185 SGGANLPRQDDVFPDKNHFGRIFYNQANLSAKGIPQIALVLGSCTAGGAYVPAMSDENVI 244
S AN+ V NHFGR F Q + K P LV+G AG + V + I
Sbjct: 1201 SSMANIAGYKAVIEAANHFGRFFTGQITAAGKVPPAKVLVIGGGVAGLSAVGTAKNMGAI 1022
Query: 245 VKGNGT 250
V+ T
Sbjct: 1021 VRAFDT 1004
>08008
Length = 812
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -3
Query: 115 LAGYELYGKEEVPSGGVVTGVGLIHNKFCVIVANDPTVKGGS 156
L Y L G+ E PSGG VG++ N+F V+ A+ + K GS
Sbjct: 480 LRWYWLAGRLESPSGGHG*DVGIVTNRF-VVGADQKSSKHGS 358
>27198
Length = 1148
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 137 LIHNKFCVIVANDPTVKGGSYYPITVKKHLRAQEIAEQNNLPCVYLVDSGGANL 190
+ + +++AND T + GS+ P +A E + + LP +++ + GA +
Sbjct: 358 FLEGRDIIVIANDMTWRIGSFGPQEDLLFKKASEYSRKKGLPRIFISANSGARI 519
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00171850__14.m00361dnak_protein_BiP
(652 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30255 265 1e-89
21024 266 2e-71
26390 191 8e-51
27378 153 2e-37
37715 143 3e-34
24750 106 3e-23
31218 102 6e-22
20979 86 6e-17
09881 73 4e-13
06909 70 3e-12
12271 64 2e-10
13684 54 2e-07
29861 54 2e-07
03996 53 3e-07
34036 42 8e-04
>30255
Length = 1761
Score = 265 bits (678), Expect(2) = 1e-89, Method: Compositional matrix adjust.
Identities = 131/197 (66%), Positives = 159/197 (80%), Gaps = 3/197 (1%)
Frame = -1
Query: 354 KTDIHEIVLVGGSTRIPKIRKLVQDFF-GKEPNTGINPDEAVAYGAAVQGGIICGETFSE 412
K IHEIVLVGGSTRIPKI+KL+QDFF GKE INPDEAVAYGA VQ I+ G+ E
Sbjct: 1644 KPGIHEIVLVGGSTRIPKIQKLLQDFFNGKELCKSINPDEAVAYGACVQAAILHGDKSEE 1465
Query: 413 --PIVMIDATPLSLGIETVGGVMSTIIPRNSVSPTKKTQTFTTYQDNQETVTIQIFEGER 470
++++D PLS+GIET GGVM+ +I RN+ PTK+TQTFTTY DNQ V IQ++EGER
Sbjct: 1464 VQDLLLLDVAPLSMGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 1285
Query: 471 PMTKDNHLLGKFDLTGIPAAPRGQPQIEVTFEVDVNGILQVSAVEKSAGVKNQVTITNDS 530
MT+DN+LLGKF+LTGIP APRG PQIEVTF++D NGIL VSA +KS G +N++TITND
Sbjct: 1284 AMTRDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAADKSTGKENKITITNDK 1105
Query: 531 SRLSKEEIEKMLDDAKK 547
RLSKEEIE+M++DA+K
Sbjct: 1104 GRLSKEEIERMVNDAEK 1054
Score = 83.6 bits (205), Expect(2) = 1e-89, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 60/81 (74%)
Frame = -3
Query: 558 RIDAKNSLDSYVHSMRNTVEDEAKLANKINEDDKKTIKDALKETQDWLSANPEADKEEYE 617
RI +KNSL+SY M++T+EDE K+ +KI E+DKKTI D E WL AN A+K+EY+
Sbjct: 1024 RISSKNSLESYAFHMKSTIEDE-KIKDKIGEEDKKTIVDKCNEVISWLDANQTAEKDEYD 848
Query: 618 ERKTKLEGICNPIISKAHQQA 638
+++ +LE +CNPII+K +Q +
Sbjct: 847 DKQKELEKVCNPIITKLYQAS 785
>21024
Length = 3220
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 220/348 (63%), Gaps = 11/348 (3%)
Frame = +1
Query: 286 IQKLKREV---ENAKRKLSSTMTAQIEIEDLVEGLD----FNEELTRAKFEELNADLFKK 338
IQ L R+ + +K +LSS++ I + L N +L+R+KFE L L K+
Sbjct: 994 IQWLCRDYVRQQKSKIELSSSLQTDINLPYLTMDASGPKHMNLKLSRSKFESLVESLVKR 1173
Query: 339 TIGPVQTALEDSGFKKTDIHEIVLVGGSTRIPKIRKLVQDFFGKEPNTGINPDEAVAYGA 398
T+GP Q AL+D+ KK+DI E++LVGG +R+PK++ VQD FG+ P+ +NPDEAVA GA
Sbjct: 1174 TVGPCQKALQDAEVKKSDIGEVILVGGMSRMPKVQSTVQDLFGRTPSKSVNPDEAVAIGA 1353
Query: 399 AVQGGIICGETFSEPIVMIDATPLSLGIETVGGVMSTIIPRNSVSPTKKTQTFTTYQDNQ 458
A+QGG++ G+ ++++D TPLSLGIET+GGV + +I RN+ PTKK+Q F+T D Q
Sbjct: 1354 AIQGGVLAGDVTD--VLLLDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 1527
Query: 459 ETVTIQIFEGERPMTKDNHLLGKFDLTGIPAAPRGQPQIEVTFEVDVNGILQVSAVEKSA 518
V I++ +GER M DN LLG+F L GIP APRG PQ+EVTF++D NGI+ VSA +K
Sbjct: 1528 TQVEIKVHQGEREMANDNKLLGQFTLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDKGT 1707
Query: 519 GVKNQVTITNDSSRLSKEEIEKMLDDAKKFEAQDKVAKERIDAKNSLDSYVHSMRNTVED 578
G + Q+ I + S LSK+EIE M+ +A+ D+ KE ++ N DS +H + +E+
Sbjct: 1708 GKEQQIVIQS-SGGLSKDEIENMIKNAEAHAEDDRRKKELVEVLNQADSIIHDTESKMEE 1884
Query: 579 EAKLANKINEDDKKTIKDALKETQDWLSAN----PEADKEEYEERKTK 622
+++ +++ +++ + E + L+ PE +EE + + K
Sbjct: 1885 ---FKDQLPQEECDKLREKINEVKQLLANKDNEAPEKIREETSDLQQK 2019
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/275 (40%), Positives = 161/275 (58%), Gaps = 7/275 (2%)
Frame = +3
Query: 27 KVECPVIGIDLGTTYSCVGVYKKGQVEIIPNELGHRITPSVVAFT-DEERLVGESAKNQA 85
KV+ VIGIDLGTT SCV + + Q +++ N G R TPSV+AFT D ER+ G AK QA
Sbjct: 237 KVKGHVIGIDLGTTNSCVALMEGKQAKVLENSEGSRTTPSVIAFTKDGERISGMPAKRQA 416
Query: 86 VNNPTRTLYDVKRLIGRKYTDKTVQYDKKFLPYEIIE-KNGKPYIKVDNVRGETKVYAAE 144
V N TL KRLIGR++ D VQ D K + Y+I++ NG + V + K+Y+
Sbjct: 417 VTNAENTLSATKRLIGRRFEDPEVQKDMKNVSYKIVKASNGDAW-----VEAQGKMYSPS 581
Query: 145 EISAMVLVKMKEIAETFLGTTVKNAVVTVPAYFNDAQRQSTKDAGAIAGLDV----QRIL 200
++ A VL+KMKE AE++LG+ V NAVVTVPAYFND+QRQ+TKDAG I+GL QR
Sbjct: 582 QVGAFVLMKMKETAESYLGSKVNNAVVTVPAYFNDSQRQATKDAGQISGLKCVACDQRT- 758
Query: 201 NEPTAAAIAYGLDKKQGEKNILVFDLGGGTFDVSILTIDEGVFEVIATSGDTH-LGGADF 259
+ ++ +A+ K + + ++ + G +S + E + T +TH F
Sbjct: 759 HSCSSCFMAWTSLKIK**RCLI*AE--GRLTSLSWRSRRECLKSNQPT--ETHSWEERTF 926
Query: 260 DQRVMDYFIKLTKKKHNRDISGDKRAIQKLKREVE 294
D ++++ KK+ DI+ D A+Q+L+ E
Sbjct: 927 DNYMVNFLASEFKKEQGLDITKDPMAVQRLREAAE 1031
>26390
Length = 665
Score = 191 bits (485), Expect(2) = 8e-51, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 138/197 (70%), Gaps = 5/197 (2%)
Frame = +2
Query: 409 TFSEPIVMIDATPLSLGIETVGGVMSTIIPRNSVSPTKKTQTFTTYQDNQETVTIQIFEG 468
+ S ++++D LSLGIETVGGVM+T+I R + P +K + F+T QDNQ++VTIQ++EG
Sbjct: 2 SMSNDVLVMDVNALSLGIETVGGVMTTLIARGTTIPARKAKVFSTAQDNQDSVTIQVYEG 181
Query: 469 ERPMTKDNHLLGKFDLTGIPAAPRGQPQIEVTFEVDVNGILQVSAVEKSAGVKNQVTITN 528
ER TKDNHLLG+FDLTGIPAAPRG PQIEVTF+VD NG++QVSA +K G KN + I
Sbjct: 182 ERSRTKDNHLLGRFDLTGIPAAPRGVPQIEVTFQVDANGVMQVSAEDKGTGQKNDIIIQQ 361
Query: 529 DSSRLSKEEIEKMLDDAKKFEAQDKVAKERIDAKNSLDSYVHSMRNTVEDEAKLA----- 583
S LS E++E+M+ +A+ F +D+ +E +++ L+S ++ ++ ++D K+
Sbjct: 362 SGSGLSPEDVERMVQEAQDFAEEDRKFRELTESRTGLESLAYTAQHQLQDLHKMXASERP 541
Query: 584 NKINEDDKKTIKDALKE 600
+++DD ++ ++E
Sbjct: 542 GTLSDDDLHXAQEVVRE 592
Score = 28.1 bits (61), Expect(2) = 8e-51, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 601 TQDWLSANPEADKEEYEERKTKLE 624
T WL A+P A EE +ERK++L+
Sbjct: 594 TIQWLEAHPSASVEEVDERKSQLQ 665
>27378
Length = 410
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
Frame = -1
Query: 272 KKKHNRDISGDKRAIQKLKREVENAKRKLSSTMTAQIEIEDLVEGLDFNEELTRAKFEEL 331
K+K+ +D+ + RA+++L+ E AKR LSS+ A IE++ L EG DF +++RA+FEEL
Sbjct: 404 KRKYKKDLRSNPRALRRLRTAAERAKRTLSSSTEATIEVDALFEGHDFYTKISRARFEEL 225
Query: 332 NADLFKKTIGPVQTALEDSGFKKTDIHEIVLVGGSTRIPKIRKLVQDFF-GKEPNTGINP 390
ADLF++T+ PV+ AL D+ K IH+IVLVGGSTRIPK++ L+Q FF GK N INP
Sbjct: 224 CADLFRQTLAPVEKALNDAKMDKQMIHDIVLVGGSTRIPKVQNLLQQFFGGKSLNLSINP 45
Query: 391 DEAVAYGAAVQGGI 404
DEAVAYGAAVQ I
Sbjct: 44 DEAVAYGAAVQAAI 3
>37715
Length = 468
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 84/110 (76%)
Frame = -2
Query: 119 EIIEKNGKPYIKVDNVRGETKVYAAEEISAMVLVKMKEIAETFLGTTVKNAVVTVPAYFN 178
++I K+ KP+I+ V G TK +A EEISAMVL KM++IAE +LG + NAVVTVPAYFN
Sbjct: 455 KVINKSNKPHIQAL-VSGATKTFAPEEISAMVLGKMRDIAEAYLGKKIDNAVVTVPAYFN 279
Query: 179 DAQRQSTKDAGAIAGLDVQRILNEPTAAAIAYGLDKKQGEKNILVFDLGG 228
DAQRQ+TKDAG IAGL+V RI+NEPTAAAIAYGLDK+ GEK
Sbjct: 278 DAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRDGEKTFWCLTWAA 129
Score = 97.8 bits (242), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/52 (86%), Positives = 50/52 (96%)
Frame = -1
Query: 219 KNILVFDLGGGTFDVSILTIDEGVFEVIATSGDTHLGGADFDQRVMDYFIKL 270
+NILVFDLGGGTFDVS+LTID GVFEV+AT+GDTHLGG DFDQRVMD+FIKL
Sbjct: 159 ENILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMDHFIKL 4
>24750
Length = 552
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 60/70 (85%)
Frame = +1
Query: 463 IQIFEGERPMTKDNHLLGKFDLTGIPAAPRGQPQIEVTFEVDVNGILQVSAVEKSAGVKN 522
+Q++EGER MT+DN+LLGKF+LTGIP APRG PQIEVTF++D NGIL VSA +KS G +N
Sbjct: 157 LQVYEGERAMTRDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAADKSTGKEN 336
Query: 523 QVTITNDSSR 532
++TITND +
Sbjct: 337 KITITNDKGQ 366
>31218
Length = 322
Score = 102 bits (253), Expect = 6e-22, Method: Composition-based stats.
Identities = 53/101 (52%), Positives = 72/101 (71%)
Frame = +2
Query: 251 DTHLGGADFDQRVMDYFIKLTKKKHNRDISGDKRAIQKLKREVENAKRKLSSTMTAQIEI 310
DTHLGG DFDQR++DY +KL K+K RD+ D RA+ +L+R E AKR LSS + ++++
Sbjct: 2 DTHLGGEDFDQRLVDYLVKLIKQKTGRDVRHDTRAMSRLRRSAEKAKRALSSQHSTKVDL 181
Query: 311 EDLVEGLDFNEELTRAKFEELNADLFKKTIGPVQTALEDSG 351
+ + L + LTRAKFEELN DLF+ T+ V+ ALEDSG
Sbjct: 182 DGVTSDLA-DLTLTRAKFEELNTDLFRSTLTTVKRALEDSG 301
>20979
Length = 976
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 3/158 (1%)
Frame = +1
Query: 256 GADFDQRVMDYFIKL--TKKKHNRDISGDKRAIQKLKREVENAKRKLSSTMTAQIEIEDL 313
G + R+ D+ K+ +KK + + + RA+ KL +E E K+ LS+ + ++E L
Sbjct: 70 GVEMTLRLRDHLAKVFNGQKKRSFKLEDNPRAMAKLLKEAERVKKVLSANSDHKAQVEGL 249
Query: 314 VEGLDFNEELTRAKFEELNADLFKKTIGPVQTALEDSGFKKTDIHEIVLVGGSTRIPKIR 373
VEG DF +++R + EL DL + P++ AL+ S +I EI+L+GG +R+P+++
Sbjct: 250 VEGEDFAAKVSREDYLELIKDLLARVTKPMEDALKVSEITMPEITEIILMGGGSRVPRVQ 429
Query: 374 KLVQDFFGK-EPNTGINPDEAVAYGAAVQGGIICGETF 410
+ + F GK + IN DEA A GA Q + G+ F
Sbjct: 430 EELLKFSGKSDLGKSINTDEAAALGAVYQAAYL-GKGF 540
>09881
Length = 600
Score = 72.8 bits (177), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 60/108 (55%)
Frame = +3
Query: 25 KKKVECPVIGIDLGTTYSCVGVYKKGQVEIIPNELGHRITPSVVAFTDEERLVGESAKNQ 84
+K V+ G+ LGT +C+ VYK G+ + N+ G R TP VVAFT + VG SAK
Sbjct: 165 RKYVKMAAYGVHLGTCSACLAVYKDGKTSVAANDAGDRSTPCVVAFTACDAEVGASAKQG 344
Query: 85 AVNNPTRTLYDVKRLIGRKYTDKTVQYDKKFLPYEIIEKNGKPYIKVD 132
V+N T+ +VKR++G + D Q P +++ + +P +V+
Sbjct: 345 IVSNVKNTVCNVKRILGLTFEDPVTQEYLASSPVKVVNQKNQPMFEVE 488
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +2
Query: 163 GTTVKNAVVTVPAYFNDAQRQSTKDAGAIAGLDVQRILNEPTAAAIAYGLDKKQGE 218
G +++AV+ VP+ F+D QR + A + AG V R++NE +AAA+AY L + E
Sbjct: 2 GKGIQDAVLAVPSDFSDKQRAAASAAASKAGFKVLRLINECSAAALAYDLGQTVTE 169
>06909
Length = 456
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 53/70 (75%)
Frame = -3
Query: 572 MRNTVEDEAKLANKINEDDKKTIKDALKETQDWLSANPEADKEEYEERKTKLEGICNPII 631
M++T+EDE K+ +KI+ +DKKTI D E WL AN A+K+EY++++ ++E +CNPII
Sbjct: 382 MKSTIEDE-KIKDKISTEDKKTILDKCDEVIAWLDANQLAEKDEYDDKQKEIEKVCNPII 206
Query: 632 SKAHQQAGGS 641
+K +Q AGG+
Sbjct: 205 TKLYQAAGGA 176
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -1
Query: 547 KFEAQDKVAKERIDAKNSLDSYVHSMRNTVEDEAKLANKINEDDKKTIKDALKETQDWLS 606
K++ D+ K RI AKNSL+SY + + + ++++ K W+
Sbjct: 456 KYKEDDEKQKSRISAKNSLESYAST*SPPSRTKRSRTRSARKTRRRSLTSVTK*LPGWMP 277
Query: 607 AN 608
N
Sbjct: 276 TN 271
>12271
Length = 1762
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +2
Query: 318 DFNEELTRAKFEELNADLFKKTIGPVQTALEDSGFKKTDIHEIVLVGGSTRIPKIRKLVQ 377
DF+ ++TR K+ L DL + PVQ L S +I EI+L+GG +R+PKI +++
Sbjct: 41 DFSCKVTRDKYLHLIQDLLDRVTLPVQQVLTASQITWAEITEIILMGGGSRLPKIHEILL 220
Query: 378 DFFG-KEPNTGINPDEAVAYGAAVQGGIIC 406
D+ G KE +N DEA A GA Q +
Sbjct: 221 DYSGKKELGKSLNTDEAGALGAVYQAAYLA 310
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Frame = +1
Query: 529 DSSRLSKEEIE---KMLDDAKKFEAQDKVAKERIDAKNSLDSYVHSMRNTVEDEAKLANK 585
D + LSK++++ K L D +K + ++K A ++ A+N ++S++ + ++ + +E LA+
Sbjct: 1003 DMAELSKDQVKQSKKRLTDWRKRD-EEKAAVQK--ARNEVESFIITAQDKMSEETYLASS 1173
Query: 586 INEDDKKTIKDALKETQDWLSANPEADKEEYEERKTKLEGICN 628
+E+ + I D L + DWL K+ + T+ G C+
Sbjct: 1174 TDEE-RAXILDQLSQASDWLYEQSHQAKKWFSPTNTET*GTCS 1299
>13684
Length = 438
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 37/63 (58%)
Frame = -3
Query: 26 KKVECPVIGIDLGTTYSCVGVYKKGQVEIIPNELGHRITPSVVAFTDEERLVGESAKNQA 85
K V+ G+ LGT +C+ VYK G+ + N+ G R TP VVAFT + VG SAK
Sbjct: 190 KYVKMAAYGVHLGTCSACLAVYKDGKTSVAANDAGDRSTPCVVAFTACDAEVGASAKQGI 11
Query: 86 VNN 88
V+N
Sbjct: 10 VSN 2
>29861
Length = 318
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = +3
Query: 369 IPKIRKLVQDFFGKEPNTGINPDEAVAYGAAVQGGIICG 407
IPK+R+L+ D+FGK PNT I+P+ AVA G ++Q GII G
Sbjct: 3 IPKVRQLIGDYFGKAPNTAIDPELAVASGVSIQAGIIGG 119
>03996
Length = 1105
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 28/224 (12%)
Frame = -2
Query: 320 NEELTRAKFE----ELNADLFKKTIGPVQTALEDSGFKKTDIHEIVLVGGSTRIPKIRKL 375
N E+ FE EL DL + P++ AL+ S +I EI+L+GG +R+P++++
Sbjct: 1098 NAEIGNKDFELDVLELIKDLLARVTKPMEDALKVSEITMPEITEIILMGGGSRVPRVQEE 919
Query: 376 VQDFFGK-EPNTGINPDEAVAYGAAVQGGIICGETFSEPIVMI-DATPLSLGIE------ 427
+ F GK + IN DEA A GA Q + G+ F + DA + +E
Sbjct: 918 LLKFSGKSDLGKSINTDEAAALGAVYQAAYL-GKGFKVKTFHVRDANIYPINVEFEKQKS 742
Query: 428 ------TVGGVMSTIIPRNSVSPTKKTQTFTT-YQDNQETVT---IQIFEGERPMTKDNH 477
+ + T+ R + P +K TF ++D V + E +
Sbjct: 741 EEDSATSARTIKRTLFGRMNPYPQRKVMTFNKHFKDFNFEVRYGDLDFIPEEEQKSLSAR 562
Query: 478 LLGKFDLTGIPA--APRGQPQ----IEVTFEVDVNGILQVSAVE 515
LL L G+ + G+ ++ F +D +GIL + VE
Sbjct: 561 LLSNVSLEGVESXYGKLGEEAEYKGVKAHFRMDESGILHLEKVE 430
>34036
Length = 363
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 26/30 (86%)
Frame = +2
Query: 612 DKEEYEERKTKLEGICNPIISKAHQQAGGS 641
+K+EY++++ ++E +CNPII+K +Q AGG+
Sbjct: 2 EKDEYDDKQKEIEKVCNPIITKLYQAAGGA 91
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00068140__3707.m00239succinyl-CoA_synthetase,
_alpha_subunit_family_protein
(310 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
25088 273 2e-87
05926 30 1.7
>25088
Length = 1646
Score = 273 bits (698), Expect(2) = 2e-87, Method: Compositional matrix adjust.
Identities = 131/210 (62%), Positives = 157/210 (74%)
Frame = +1
Query: 4 KTISNFFSSTKPYVWINKHTKVICQGITGNQGTLHTQQALEYGTKMVGGVNPAKAGQTHL 63
+++ + +++T+ + I HTK+ICQG TG QGT H+QQA+EYG+ +VGGV+P K G THL
Sbjct: 67 QSLRSIYTATRQNLMIGSHTKLICQGFTGKQGTFHSQQAIEYGSNLVGGVSPGKGGSTHL 246
Query: 64 GLPVFKNCQEAKKVTGCDASVIYVPPPHXXXXXXXXXXXXXPLVVVITDGIPQHDMVKVK 123
PVF + QEA TG DA+VI+VPPP LVV IT+GIPQ DMV+VK
Sbjct: 247 DRPVFNSVQEAVDKTGADATVIFVPPPFAAAAILEAIDAEISLVVCITEGIPQQDMVRVK 426
Query: 124 HALRQQKITRIIGPNCPGIIKPNECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVDQTTKA 183
H L +Q TR+IGPNCPGIIKP E KIGIMPG+IH+ GKIGIVSRSGTLTYEAV QTT+
Sbjct: 427 HRLVRQNKTRLIGPNCPGIIKPGEIKIGIMPGHIHQKGKIGIVSRSGTLTYEAVHQTTQV 606
Query: 184 GLGQSTVVGIGGDPFNGTNFIDVLERFVED 213
GLGQS VGIGGDPFNGTNFID LE F+ D
Sbjct: 607 GLGQSLCVGIGGDPFNGTNFIDCLEVFLAD 696
Score = 67.0 bits (162), Expect(2) = 2e-87, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Frame = +3
Query: 236 WLKANNK--TNKPVVSFIAGVTAPPERRMGHAGAIVSGGKGSATEKIKALESAGIKVCRS 293
+LK +N KPVVSFIAG+TAPP RRMGHAGAI++GGKG A EKI++L+SAG++V S
Sbjct: 762 YLKNHNTGPKAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGANEKIESLKSAGVEVSMS 941
Query: 294 PATLGQEMLNLMK 306
PA LG ML M+
Sbjct: 942 PAQLGTTMLQAME 980
>05926
Length = 491
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 241 NKTNKPVVSFIAGVTAPPERRMGHAGAIV 269
+K KP A +TAP RR+GH G ++
Sbjct: 64 DKNEKPTFENEAKLTAPDRRRLGHIGRLM 150
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00420340__3679.m00064Dynein_heavy_chain_family_protein
(4409 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
20410 229 3e-84
28658 256 1e-67
14519 218 3e-56
19780 158 4e-48
36750 119 2e-26
39234 90 3e-26
37041 117 1e-25
32781 90 7e-20
20622 97 1e-19
07275 97 2e-19
39408 65 5e-17
26723 87 2e-16
06548 84 1e-15
35960 81 8e-15
26356 60 3e-13
28569 75 6e-13
12392 75 7e-13
27572 69 3e-11
35288 59 4e-08
20268 57 2e-07
31256 31 0.003
31085 40 0.014
13559 37 0.16
02362 36 0.29
>20410
Length = 754
Score = 229 bits (583), Expect(2) = 3e-84, Method: Composition-based stats.
Identities = 107/131 (81%), Positives = 114/131 (87%)
Frame = -2
Query: 1661 LVITPLTDRCYRTLCGAIHLNYGGAPEGPAGTGKTETVKDLAKALARQCVVFNCSDGLDY 1720
LVITPLTDRCYRTL GA+HL+ GGAPEGPAGTGKTET KDLAKA+A+QCVVFNCSDGLDY
Sbjct: 393 LVITPLTDRCYRTLFGALHLHLGGAPEGPAGTGKTETTKDLAKAVAKQCVVFNCSDGLDY 214
Query: 1721 KAMGKFFKGLASSGAWSCFDEFNRIDLEVLSVVAQQILTIQLARGKGVDKFVFEDTLIPL 1780
A+GKFFKGLAS GAWSCFDEFNRIDLEVLSVVAQQILTIQ G D +FE T I L
Sbjct: 213 IALGKFFKGLASCGAWSCFDEFNRIDLEVLSVVAQQILTIQRGINSGSDTLLFEGTEIRL 34
Query: 1781 KPTCNVFITMN 1791
PTC+VFITMN
Sbjct: 33 DPTCSVFITMN 1
Score = 105 bits (261), Expect(2) = 3e-84, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 74/104 (71%)
Frame = -1
Query: 1562 GPKGIQKHLDYLTQSIEDIVSLVRQNISKLNRCTIEALIVLDVHNQDVVSALVKEGISKK 1621
G + ++ +L+ + I+ IV+LVR +SK NR T++A+IVL+VH++DV++ L K IS +
Sbjct: 691 GQQALEAYLEINNKQIDQIVALVRGKLSKQNRVTLQAMIVLEVHSRDVLAELCKVQISSE 512
Query: 1622 EEFAWQSQLRYYWEEANTVVKIINAVVEYNYEYLGNSPRLVITP 1665
+F W SQLRYYWEE + ++IN++++Y YEYLGNS R P
Sbjct: 511 LDFNWLSQLRYYWEEGQMITRMINSMLKYGYEYLGNSGRTXHHP 380
>28658
Length = 552
Score = 256 bits (655), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/169 (72%), Positives = 146/169 (86%)
Frame = +3
Query: 1737 SCFDEFNRIDLEVLSVVAQQILTIQLARGKGVDKFVFEDTLIPLKPTCNVFITMNPGYAG 1796
+CFDEFNRID+EVLSVVAQQI TI A+ + +D+ +FE + L+P+C VFITMNPGYAG
Sbjct: 3 ACFDEFNRIDIEVLSVVAQQITTIHKAQQQRLDRSIFEGVELVLRPSCAVFITMNPGYAG 182
Query: 1797 RSELPDNLKALFRAVAMMVPDYALIAEIVLYSFGFSDARNLARKIVTTYKLCSEQLSSQD 1856
R+ELPDNLKALFR VAMMVPDYALIAEI L+SFGFSDARNLA+KIVTT+KL SEQLSSQD
Sbjct: 183 RTELPDNLKALFRPVAMMVPDYALIAEISLFSFGFSDARNLAKKIVTTFKLSSEQLSSQD 362
Query: 1857 HYDYGMRAVKSVLTAAGNLKRKYVNENESVLMLRAISDVNLAKFLAFDL 1905
HYD+GMRAVKSV++AAGNLKR+ + +E ++ LRAI DVN+ KFL DL
Sbjct: 363 HYDFGMRAVKSVISAAGNLKRQSPDMDEELIALRAIRDVNVPKFLVDDL 509
>14519
Length = 945
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 164/259 (63%), Gaps = 3/259 (1%)
Frame = -3
Query: 2664 RYYEEVLDYDRLQNAVEQGLSNYN-MMTDKPMDLVLFNFAIEHLLIISRILKSPGGNALL 2722
R YE + +++L+ + L YN + MDLV F A+ HLL ISRI+++P G+ALL
Sbjct: 781 RIYEPIETFEQLEERLLFFLQQYNESIRGAGMDLVFFKDAMIHLLKISRIIRTPRGHALL 602
Query: 2723 VGVGGSGRQSLTRLAASISDYNVCQIEISKQYGKVEFHEDLKVIMRSAGSLGKPTVFLFT 2782
VGVGGSG+QSLTRL++ I+ Y QI +++ Y +DLK + R+AG GK F+FT
Sbjct: 601 VGVGGSGKQSLTRLSSFIAGYKTFQITLTRSYNVSNLLDDLKNLYRTAGQEGKGITFIFT 422
Query: 2783 DSQIKQESFVEDINSLLNTFEVPNLFAPDEKADALEKMRVATKQEGKQKEGTPTQMYAYF 2842
D +IK E F+E +N++L++ V NLFA DE + L ++ K E ++ + +Y Y+
Sbjct: 421 DQEIKDEGFLEYLNNMLSSGVVANLFARDEMDEILGELVPVMKXEFPRRPPSNENLYEYY 242
Query: 2843 IERVKKNLHIVLCFSPIGDAFRTRVRMFPSLVNCCTIDWFQEWPQDALLSVANKFTQ--N 2900
+ RV+ NLH+ LCFSP+G+ FR R FP L++ CT+DWFQ WP+DAL++VA+ F +
Sbjct: 241 LSRVRNNLHVTLCFSPVGEKFRQRALKFPGLISGCTMDWFQRWPKDALIAVADHFLAEFD 62
Query: 2901 IPMDKNIKKSCIELLQYFH 2919
I IKK I+ + H
Sbjct: 61 IVCSPEIKKQVIQTMGIVH 5
>19780
Length = 1009
Score = 158 bits (399), Expect(2) = 4e-48, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 141/261 (54%), Gaps = 10/261 (3%)
Frame = +1
Query: 2221 QTIDNKFMFAFVWGIGGSLTTEYRKQFDVFVKRLANGDIPLDNDKIPRKKMSL--PERAN 2278
+ I+ F+F+FVW + + + R +F +++ +K+ KK L PE
Sbjct: 52 ELIEPWFIFSFVWSVAATCDNDGRVKFSEWLR-----------EKMAEKKCKLKFPEEGL 198
Query: 2279 LYEYCL-------VNXXXXXXXXXXXXXXXWVLWVDEIKKEEISNKIQPQEILIQTTDTS 2331
+Y+Y L + W W+ + E++ + +IL+ T DT
Sbjct: 199 VYDYMLDDAGISSTDRDDIEEEEAVHKEVQWRNWMHGLPTYEVAPDTKFSDILVPTIDTI 378
Query: 2332 RYSYMINVAIQDEFPVLLCGPTGTGKSTYIKNILNNHLDAVKYITIEIGFSAQTSCTQTQ 2391
R +Y+I + + + VL GPTGTGK+ I + L ++ A +YI I FSA+TS QTQ
Sbjct: 379 RSAYIIGMLLSNNKTVLSVGPTGTGKTMTISDKLTRNM-AKEYIPDFIVFSAKTSANQTQ 555
Query: 2392 EIIDSKLDRISKGVYGPR-NKRLVVFIDDLNMPAKEQWGAQPPIEILRQKLDQGGWYDNK 2450
++ID KLD+ KGV+GP K + FIDDLNMPA+E +GAQPPIE++RQ +D GWYD K
Sbjct: 556 DLIDGKLDKRRKGVFGPPLGKYFIFFIDDLNMPAREVYGAQPPIELIRQWMDFNGWYDRK 735
Query: 2451 DKEKQFKQIIDTQLISAMGPP 2471
F+ ++D AMGPP
Sbjct: 736 -AIGDFRNLVDVNFACAMGPP 795
Score = 55.1 bits (131), Expect(2) = 4e-48, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Frame = +2
Query: 2469 GPPGGGRTFITPRILRHFSLISLANFDDENLHRIFGTILEWYLKKGQFAVEVQKFASKII 2528
GPPGGGR +T R+LRHF+ ++ +D + +IF TIL ++ + + + +++
Sbjct: 788 GPPGGGRNPVTARLLRHFNFLTFTEMEDPSKRKIFSTILRSWISQ---SPNISSLCDQLV 958
Query: 2529 TGTLDIYKQAISELLPT 2545
+ Y ++LLPT
Sbjct: 959 DTCIATYNTIQTQLLPT 1009
>36750
Length = 1066
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
Frame = -1
Query: 2411 KRLVVFIDDLNMPAKEQWGAQPPIEILRQKLDQGGWYDNKDKEKQFKQIIDTQLISAMGP 2470
+++ VF+DD+NMP +WG Q EI+RQ ++ GG+Y + +K F I D Q ++AM
Sbjct: 793 QKMTVFLDDINMPIINEWGDQVANEIVRQLMENGGFY-SLEKPGDFTTIADVQFLAAMIQ 617
Query: 2471 PGGGRTFITPRILRHFSLISLANFDDENLHRIFGTILEW-YLKKGQFAVEVQKFASKIIT 2529
PGGGR I R+ R F + + + ++ +IF I + + K+ F+ +V + +I+
Sbjct: 616 PGGGRNDIPQRLKRQFVIFNCTLPSNTSIDKIFSVIGQGHFCKERGFSNKVIEMVKRIVP 437
Query: 2530 GTLDIYKQAISELLPTPAKSHYLFNLRDFAKVIFGICMSDKDKVQNPEHITRLFVHEIWR 2589
T +++ ++LPTPAK HY+FNLRD +++ G+ + V + + + L+ HE R
Sbjct: 436 VTRRLWQLTKIKMLPTPAKFHYIFNLRDLSRIWQGMLKTSSSTVNSEKVLMYLWKHECCR 257
Query: 2590 VFGDRLINDD 2599
V DR + D
Sbjct: 256 VIADRCVTVD 227
>39234
Length = 476
Score = 89.7 bits (221), Expect(2) = 3e-26, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = -1
Query: 4197 QGKILLSQSLERACKQIIDGKVPQLWMEKSYPSLKPLGAYVNDLRMRLKFFQDWIDNGAP 4256
+G +++S LE I+ GK+P +WM+ SYPSLKPLG+YV+D RLKF QDW D GAP
Sbjct: 341 RGLVVMSSDLEEVVMSILKGKIPSMWMKVSYPSLKPLGSYVSDFLARLKFLQDWYDVGAP 162
Query: 4257 VNFWISGFYFTQSFLTG 4273
NFW + L G
Sbjct: 161 PNFWGVRVFLHTGILDG 111
Score = 50.1 bits (118), Expect(2) = 3e-26, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = -3
Query: 4153 EQAIIKYPVNYNESMNTVLTQELNRFNKLISIIRSSLKDINLALQ 4197
E A+ KYP +Y +SMNTVL QE+ RFN+L+ +R+SL +I A++
Sbjct: 474 EAALRKYPTSYEQSMNTVLVQEMVRFNRLLITVRNSLINIRKAIK 340
Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Frame = -2
Query: 4262 SGFYFTQSFLTGVLQNFARKYVIPIDEIEFDFKVMHKSE-EVKPEDG 4307
SGF+FTQ+FLTG QNFARKY IPID + FD++V+ + E + P+DG
Sbjct: 145 SGFFFTQAFLTGAQQNFARKYTIPIDLLAFDYEVLDEKEYKTAPDDG 5
>37041
Length = 350
Score = 117 bits (292), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/101 (49%), Positives = 69/101 (68%)
Frame = -2
Query: 2043 WTDGILAVKYRAFAKAEDDDRKWLIFDGPVDAVWIENMNTVLDDNKKLCLNSGEIIAMSK 2102
WTDGI + +R K + + WL+ DGPVDA+WIEN+N+VLDDNK L L +G+ I M+
Sbjct: 310 WTDGIFSTLWRRTHKTKKGEHVWLVLDGPVDAIWIENLNSVLDDNKTLTLANGDRIPMAP 131
Query: 2103 SMNLIFEPMDLQAASPATVSRCGMIYMEPSSMGWQPLYQSW 2143
+ +IFE ++ ASPATVSR GM++M S + W P+ Q W
Sbjct: 130 NCKIIFEVHNIDNASPATVSRNGMVFMSSSILDWDPILQGW 8
>32781
Length = 632
Score = 90.1 bits (222), Expect(2) = 7e-20, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Frame = -3
Query: 3267 LGGEKGRWKELAEQLKSEYDKLTGDVLISSGVIAYLGAFTSAFRQEII-TEWTKLSK--E 3323
L E RW + +Q + L GDVL+ + ++Y+G+FT +R E+ T T K +
Sbjct: 498 LASENVRWADSIQQFRINEQTLPGDVLMITAFVSYVGSFTXRYRTELFETHLTPFLKGLK 319
Query: 3324 RNIPSSENFSLSHVLGDPVKIRSWNLDGLPSDNFSIDNGIVIFKARRWPLCIDPQNQANK 3383
+P SE +L D I WN +GLPSD S +N ++ RWPL IDPQ Q K
Sbjct: 318 YPVPVSEGLDPLTMLVDDADIAGWNNEGLPSDRMSTENATILTSCERWPLMIDPQLQGIK 139
Query: 3384 WIKKMEQQKGLYIIKLSDSDYLRTL 3408
WIK + L +++L YL T+
Sbjct: 138 WIKT-KYGADLKVVRLGQKGYLDTI 67
Score = 28.5 bits (62), Expect(2) = 7e-20, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 3409 ENAIQFGKPVLLENVGEDLDP 3429
E A+ G VLLEN+GE +DP
Sbjct: 65 ERAVANGDVVLLENLGESMDP 3
>20622
Length = 448
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%)
Frame = -2
Query: 3954 NSRAFKNLLFGLCFFHAVIQERRKYGPLGWNIPYEFNESDLRISVRQLQMFLLECPNNSS 4013
N +K +L+G+ F H ++QERRK+GPLGWNIPYEFN SD SV+ +Q L +
Sbjct: 399 NMPQWKPMLYGVGFLHTIVQERRKFGPLGWNIPYEFNTSDYNASVQFVQNHLDDMDIKKG 220
Query: 4014 IPFAALKYLTSECNYGGRVTDDKDRRLITTLLGDYYNLKVIEDPLYKFAPDPNYRIPDND 4073
+ + ++Y+ E YGGRVTDD D+RL+ T ++ + P + F Y IP
Sbjct: 219 VNWICVRYMFGEIQYGGRVTDDFDKRLLNTFCRVWFGENMFT-PAFNFY--KGYVIPKCA 49
Query: 4074 SYEGALQFIKDLP 4086
++I LP
Sbjct: 48 KINEYHEYINSLP 10
>07275
Length = 1513
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 91/194 (46%), Gaps = 4/194 (2%)
Frame = +2
Query: 4218 VPQLWMEKSYPSLKPLGAYVNDLRMRLKFFQDWI-DNGAPVNFWISGFYFTQSFLTGVLQ 4276
VP W +++YPSL LG + DL R+K + W D P W+ GF+ QSFLT ++Q
Sbjct: 38 VPDNWSKRAYPSLFTLGLWYADLLQRIKELETWTSDFQLPAAVWLGGFFNPQSFLTAIMQ 217
Query: 4277 NFARKYVIPIDEIEFDFKVMHKSEE---VKPEDGAYVFGLFIEGSKWNPIQMELDESDPK 4333
ARK P+D + V KS + P +GAYV GL++EG++W+ + E+ K
Sbjct: 218 QMARKNEWPLDRMVLQCDVTKKSRDDMAGPPREGAYVHGLYMEGARWDTQTGMMAEARLK 397
Query: 4334 VLFVQCPTXXXXXXXXXXXXNFPHYNSPVYKTSARRGTLSTTGHSTNFVMWIRLPSSRPE 4393
L P Y+ PVYKT +R T FV L +
Sbjct: 398 ELAPIMPVLFIKAIPVDRQDVRNIYSCPVYKTKSRGPT---------FVWTFNLKTKEKP 550
Query: 4394 KHWIKRGVALLTQL 4407
WI GVA+L Q+
Sbjct: 551 SKWILGGVAILLQV 592
>39408
Length = 397
Score = 65.1 bits (157), Expect(2) = 5e-17, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Frame = -1
Query: 3559 KEKSNEINEKQANAEITEKSIDAARQEYQEVSQEASHLFFAISDLVSIDPMYQY 3612
K+ +NEI+EKQA AE TEK ID AR Y +++ ++ LFF+I+DL +I+PMYQY
Sbjct: 163 KKLANEISEKQAIAETTEKKIDEARMGYTKIAVHSTILFFSIADLANIEPMYQY 2
Score = 44.3 bits (103), Expect(2) = 5e-17, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = -3
Query: 3484 LINFMITYEGLNDQLLGILVKKERPDLEEEKERL----IIEGAQNKAQLFEIEEKILQVL 3539
L+NFMIT EGL DQL G + P L ++ N +L + K L+VL
Sbjct: 395 LLNFMITPEGLQDQLAGYCGGQGAP*TGGGVRMLSFCRVLRTRDN*KKL---KTKSLEVL 225
Query: 3540 S-SDKNILTDEEAIKVLTASKE 3560
S S+ NIL DE AIKVL++SK+
Sbjct: 224 SASEGNILEDETAIKVLSSSKK 159
>26723
Length = 421
Score = 86.7 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 67/116 (57%)
Frame = -3
Query: 4167 MNTVLTQELNRFNKLISIIRSSLKDINLALQGKILLSQSLERACKQIIDGKVPQLWMEKS 4226
MN L QE++R K+I ++RS+L D+ LA+ G I++S++L A + D +VP LW + S
Sbjct: 419 MNIFLRQEIDRMQKVIVLVRSTLNDLKLAIDGTIIMSENLRDALDCMYDARVPNLWRKIS 240
Query: 4227 YPSLKPLGAYVNDLRMRLKFFQDWIDNGAPVNFWISGFYFTQSFLTGVLQNFARKY 4282
+ S LG + +L R F W G P FW++GF+ Q FLT + Q R +
Sbjct: 239 WDS-STLGFWFTELIDRNTQFHTWCFEGRPNTFWMTGFFNAQGFLTAMRQEVTRAH 75
>06548
Length = 1130
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 4/196 (2%)
Frame = -2
Query: 4216 GKVPQLWMEKSYPSLKPLGAYVNDLRMRLKFFQDWIDNGAPVNFWISGFYFTQSFLTGVL 4275
+VP W + S+ S LG + DL R F W+ G PV+FW++GF+ Q FLT +
Sbjct: 1054 ARVPNTWKKISWESAT-LGFWFTDLLDRNTQFNAWLFEGRPVSFWMTGFFNPQGFLTAMR 878
Query: 4276 QNFARKY-VIPIDEIEFD---FKVMHKSEEVKPEDGAYVFGLFIEGSKWNPIQMELDESD 4331
Q R + +D + D ++M + P +G YV GLF++G+ W L E
Sbjct: 877 QEITRAHKGWALDTVILDNDVTRMMKEDVHSPPGEGVYVHGLFLDGAGWERRNARLIEPT 698
Query: 4332 PKVLFVQCPTXXXXXXXXXXXXNFPHYNSPVYKTSARRGTLSTTGHSTNFVMWIRLPSSR 4391
KVL+ P + Y PVYK R ++ + L +++
Sbjct: 697 AKVLYTLLPVVHISATNVEKQRSMNLYECPVYKKPKRT--------DLTYIFPLMLKTNK 542
Query: 4392 PEKHWIKRGVALLTQL 4407
+W RGV LL +
Sbjct: 541 NPDYWTLRGVGLLCDI 494
>35960
Length = 734
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Frame = +1
Query: 3764 SFHRLLILRTLRPDKMIPAIMDFITERLGKKFIEPPPFDLAATYLDST---CFTPLIFIL 3820
S H LL+++ LRPD++I F+ + LG F+ +L + + T TP++
Sbjct: 355 SVHGLLVIQALRPDRLIAMARIFVEKTLGSDFVHITEKELNLSLIVETEIKGSTPVLMCS 534
Query: 3821 SPGSDPFASLNSFSEQKKKNITAISLGQGQG-PAAQKMIQDGQKSGNWVVLQNCHLAVSW 3879
+PG DP + ++ + + K +T+I++G +G A+K I KSG WV+L+N HLA W
Sbjct: 535 APGYDPSSRVDDLAAELSKQMTSIAIGSAEGFSQAEKAINSSSKSGRWVLLKNVHLAPQW 714
Query: 3880 MPTLEK 3885
+ LE+
Sbjct: 715 LVQLER 732
>26356
Length = 422
Score = 60.5 bits (145), Expect(3) = 3e-13, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Frame = -3
Query: 2476 TFITPRILRHFSLIS--LANFDDENLHRIFGTILEWYLKKGQFAVEVQKFASKIITGTLD 2533
T ++ R+ RHFS++S L + H ++G +W L G V++ + I++ ++
Sbjct: 351 TPVSLRLFRHFSMLSYPLPHGTQPATH-VYGHS-DW-LPDG-LPHAVRQCSESIVSAAVE 184
Query: 2534 IYKQAISELLPTPAKSHYLFNLRDFAKVIFGICMSDKDKVQNPEHIT 2580
IY + ++LLPTPAKSHY+FNLRD +K I G+ D +++ I+
Sbjct: 183 IYFRMSTDLLPTPAKSHYVFNLRDLSKCIQGMLQGDPGVIRDNHQIS 43
Score = 28.9 bits (63), Expect(3) = 3e-13, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 2456 FKQIIDTQLISAMGPPGGGR 2475
+K+I D L +A PPGGGR
Sbjct: 412 WKEIQDVTLTAACAPPGGGR 353
Score = 26.2 bits (56), Expect(3) = 3e-13, Method: Composition-based stats.
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 2581 RLFVHEIWRVFGDR 2594
RLFVHE RVF DR
Sbjct: 43 RLFVHETQRVFHDR 2
>28569
Length = 475
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%)
Frame = -3
Query: 3256 QLERATQLIESLGGEKGRWKELAEQLKSEYDKLTGDVLISSGVIAYLGAFTSAFRQEIIT 3315
++ER+ L+ SLG EK RW+ +E K + + GDVL+S+ +AY G F RQ +
Sbjct: 365 KVERSVALLNSLGNEKQRWEAGSETFKQQMATIIGDVLLSAAFMAYAGYFDQQMRQNLFG 186
Query: 3316 EWTKLSKERNIPSSENFSLSHVLGDPVKIRSWNLDGLPSDNFSIDNGIVIFKARRWPLCI 3375
W + I + + + L + + +W + LP+D +N I++ + R+PL +
Sbjct: 185 NWCNHLQLAMIQFRPDLARTEYLSNADERLNWQANALPTDELCTENAIMLKRFNRYPLIV 6
Query: 3376 D 3376
D
Sbjct: 5 D 3
>12392
Length = 445
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Frame = +3
Query: 1551 WTYETEKAIG-------LGPKGIQKHLDYLTQSIEDIVSLVRQNISKLNRCTIEALIVLD 1603
WT ++E+A+ + QK LD L I+ ++++K+ R E LI +
Sbjct: 69 WTRDSEEALNNARVDKKIMTNTNQKFLDLLNMLIDQTT----RDLTKIERTKFETLITIH 236
Query: 1604 VHNQDVVSALVKEGISKKEEFAWQSQLRYYWEEAN--TVVKIINAVVEYNYEYLGNSPRL 1661
VH +D+ LV+ I +F W Q R+Y++E V+ I + Y E+LG + RL
Sbjct: 237 VHQKDIFDDLVRMHIKSVNDFEWLKQSRFYYKEDTDQCVISITDVDFLYMNEFLGCTDRL 416
Query: 1662 VITPLTDRC 1670
VITPLTDRC
Sbjct: 417 VITPLTDRC 443
>27572
Length = 403
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Frame = +2
Query: 1370 FREVDQNWRVIMKDIHDKLKVLEFTRNRHLLEILKECNNKLEIVQKGLNAYLEGKRASFP 1429
F +D +++ ++ + ++ T L E L+ + L + +K L YLE KR +FP
Sbjct: 14 FDGIDTDFKELVGQVEKTKNCVDATNQPKLYERLETLQHNLALCEKALAEYLETKRLAFP 193
Query: 1430 RFYFLSNDELLEILSETKDPLRVQPHLKKCFEGIQKLNFDLN------KKVHGMYSSE 1481
RFYF+S+ +LL+ILS +P+ V HL K F+ + +L F+ + K GM+S +
Sbjct: 194 RFYFVSSSDLLDILSNGNNPVSVARHLTKLFDSMAQLKFEKDSSGNEIKVATGMHSKD 367
>35288
Length = 370
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%)
Frame = +3
Query: 3267 LGGEKGRWKELAEQLKSEYDKLTGDVLISSGVIAYLGAFTSAFRQEIITEWTKLSKERNI 3326
L GE RW E +L E +L L+++ I YL + R+E + W +
Sbjct: 3 LDGEYQRWNEQVGELTKELQELPLRALLAAAFITYLPSAPEDLRREYMKAWM------DA 164
Query: 3327 PSSENFSLSHVLGDPVKIRSWNLDGLPSDNFSIDNGIVIFKARRWPLCIDPQNQANKWIK 3386
+F L L + +W +GLPSD S++N +VI ++ + P +DP ++A W+K
Sbjct: 165 IGIAHFDLRRFLSTESEQLTWKAEGLPSDELSMENALVILQSSQRPFLVDPSSRATXWLK 344
>20268
Length = 416
Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Frame = -1
Query: 1402 ILKECNNKLEIVQKGLNAYLEGKRASFPRFYFLSNDELLEILSETKDPLRVQPHLKKCF 1460
+L+ + +LEI K L YL+ KR +FPRFYF+S++ LL +LS D V+PHL+ F
Sbjct: 281 VLRHIHEELEICFKSLMGYLDNKRRAFPRFYFVSDNILLALLSRPNDLDSVRPHLRSIF 105
>31256
Length = 351
Score = 31.2 bits (69), Expect(2) = 0.003, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 4309 YVFGLFIEGSKWNPIQMELDESDPKVLFVQCPT 4341
YV+GL++EG+ W+ +L ES + CP+
Sbjct: 346 YVYGLYLEGAGWDRRGSKLIESKTRCCLRPCPS 248
Score = 30.8 bits (68), Expect(2) = 0.003, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 4358 YNSPVYKTSARRGTLSTTGHSTNFVMWIRLPSSRPEKHWIKRGVALLTQL 4407
Y P+YK RR L+ ++ + L +++ HWI RGVALL +
Sbjct: 203 YTCPIYK-KPRRTDLT-------YIADVMLRTTQSPDHWILRGVALLCDM 78
>31085
Length = 592
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Frame = -3
Query: 2320 PQEILIQTTDTSRYSYMINVAIQDE-FPVLLCGPTGTGKSTYIKNILNNHLDAVKYITIE 2378
PQ L++T D + QDE + LL G TG+GKST +IL L ++
Sbjct: 374 PQNALLKTADMA----------QDEPYRFLLVGKTGSGKSTTGNSILGAEL-----FDVD 240
Query: 2379 IGFSAQTSCTQ---------TQEIIDS 2396
+ FS+QT C+Q T EI+DS
Sbjct: 239 VSFSSQTRCSQLKRAVVNGKTVEIMDS 159
>13559
Length = 1151
Score = 37.0 bits (84), Expect = 0.16, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 24/138 (17%)
Frame = -2
Query: 3360 DNGIVIFKARRWPLCIDPQNQANKWIKKMEQQKGLYIIKLSDSDYLR---TLENAIQFGK 3416
D G I + +WPL IDP QA+ +++ + + I+ +D + R + A++FGK
Sbjct: 1108 DVGNKITDSGKWPLIIDPTGQASTFLRYRDTNY-INAIRPTDMEEERARMAILGALRFGK 932
Query: 3417 PVLLENVGED-----------LDPSLSPILLKQTFVKGNSVF-LKLGDQTLEYSK----- 3459
P++L+ + D L P L P ++ ++ K L + +Y K
Sbjct: 931 PLVLDMMEVDMFDTAGDCFDRLLPGLLPAIMDKSITKDEKYLGLVRPNDPPDYDKNKFND 752
Query: 3460 ----DFRFYITTKLRNPH 3473
+F+F+I TK NP+
Sbjct: 751 LRLSNFKFFIVTK--NPY 704
>02362
Length = 931
Score = 36.2 bits (82), Expect = 0.29, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Frame = +1
Query: 4247 FQDWIDNGAPVNFWISGFYFTQSFLTGVLQNFARKYVIP---------IDEIEFD---FK 4294
F+ +ID G+ + + F F L + K V+ +D + D +
Sbjct: 484 FK*YIDPGSSTDKVVVTFTFPLQKLYTIFLCITYKAVVSTQSGHYGWALDTVILDNDVTR 663
Query: 4295 VMHKSEEVKPEDGAYVFGLFIEGSKWNPIQMELDESDPKVLFVQCP 4340
+M + P +G YV GLF++G+ W L E KVL+ P
Sbjct: 664 MMKEDVHSPPGEGVYVHGLFLDGAGWERRNARLIEPTAKVLYTLLP 801
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00318570__3687.m00161citrate_synthase
(474 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04396 301 3e-82
24635 124 1e-28
08275 98 9e-21
31172 83 3e-16
>04396
Length = 1170
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 150/321 (46%), Positives = 205/321 (63%), Gaps = 2/321 (0%)
Frame = -2
Query: 147 VSDELINFINRLDNKMHPMTMLSLAILYEQKTSKFAQLYNESKLNKSNYWEYTYEDSVDL 206
+ + +I +N + +HPM+ S AI SKFA+ Y + ++KS YWE YEDS+D+
Sbjct: 1169 LPNHVITMLNNFPSNLHPMSQFSAAITALNSESKFAKAYADG-VHKSKYWELVYEDSMDM 993
Query: 207 IAKLPRIAATIYRKKFKDG-KPIAHKDGLDWSAQLAHMMGFEGQETLNELLRAFLTIHAD 265
IAKLP +A+ IY ++DG P A DWS M+G++ E EL+R +LTIH+D
Sbjct: 992 IAKLPTVASIIYCNLYRDGVTPCAIDTNKDWSENFTSMLGYKDAE-FTELMRLYLTIHSD 816
Query: 266 HEGGEVSTHASHLVGSALGDPYLCMTTAYTGLAGPLHGLANQEVLKWILNFVE-VHGYDV 324
HEGG VS H HLVGSAL DPYL GLAGPLHGLANQEVL W E + G DV
Sbjct: 815 HEGGNVSAHTCHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLVWTTKLREALGGKDV 636
Query: 325 TNRQIEDYVNTTVLSGRLVPGYGHAVLRRPDPRFLHLYDFGNKYLRDNEMIRLLHQMTDV 384
++ ++ D++ T+ SG++VPGYGHAVLR+ DPR+ +F K+L ++ M RL+ Q+ V
Sbjct: 635 SDEELRDFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFRLVSQLYKV 456
Query: 385 IPRRLRTFKNISSPYPNVDCHSGALLYQLGIQEYQFYTVLFAISRSIGCLTNLVWCRAFG 444
+P L +P+PNVD HSG LL + E +YTVLF +SR++GC+ +L+W RAFG
Sbjct: 455 VPDILIEQGKAKNPWPNVDAHSGVLLQYYKMTEMNYYTVLFGVSRALGCMASLIWDRAFG 276
Query: 445 LPIERPESADLAYYNNLFQNK 465
LPIERP+S D + L +K
Sbjct: 275 LPIERPKSFDTPHLRKLLGDK 213
>24635
Length = 461
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 97/191 (50%), Gaps = 2/191 (1%)
Frame = -2
Query: 222 FKDG-KPIAHKDGLDWSAQLAHMMGFEGQETLNELLRAFLTIHADHEGGEVSTHASHLVG 280
++DG P A DWS M+G++ E EL+R +LTIH+DHEGG VS H HLVG
Sbjct: 451 YRDGVTPCAIDTNKDWSENFTSMLGYKDAE-FTELMRLYLTIHSDHEGGNVSAHTCHLVG 275
Query: 281 SALGDPYLCMTTAYTGLAGPLHGLANQEVLKWILNFVE-VHGYDVTNRQIEDYVNTTVLS 339
SAL DPYL GLAGPLHGLANQEVL W E + G DV++ ++ D++ T+ S
Sbjct: 274 SALSDPYLSFAAGMNGLAGPLHGLANQEVLVWTTKLREALGGKDVSDEELRDFIWNTLKS 95
Query: 340 GRLVPGYGHAVLRRPDPRFLHLYDFGNKYLRDNEMIRLLHQMTDVIPRRLRTFKNISSPY 399
G++VP D++ + + +P+
Sbjct: 94 GQVVP--------------------------------------DILIEQGKA----KNPW 41
Query: 400 PNVDCHSGALL 410
PNVD HSG LL
Sbjct: 40 PNVDAHSGVLL 8
>08275
Length = 1782
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 64/99 (64%)
Frame = +3
Query: 367 KYLRDNEMIRLLHQMTDVIPRRLRTFKNISSPYPNVDCHSGALLYQLGIQEYQFYTVLFA 426
K+L ++ M RL+ Q+ V+P L +P+PNVD HSG LL + E +YTVLF
Sbjct: 9 KHLPNDPMFRLVSQLYKVVPDILIEQGKAKNPWPNVDAHSGVLLQYYKMTEMNYYTVLFG 188
Query: 427 ISRSIGCLTNLVWCRAFGLPIERPESADLAYYNNLFQNK 465
+SR++GC+ +L+W RAFGLPIERP+S D + L +K
Sbjct: 189 VSRALGCMASLIWDRAFGLPIERPKSFDTPHLRKLLGDK 305
>31172
Length = 411
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = +3
Query: 24 DLKTVLREQIPIKIQGFNEMKKKYGDRVMGEITVNQALGGMRGIRALFYDQSTVDPIDGV 83
DLK L +P K + E +KK+G+ +GE+TV+ GGMRGIR L + S +DP +G+
Sbjct: 129 DLKDALERLVPEKQKEIVEFRKKHGNSKVGEVTVDMMYGGMRGIRGLVTETSVLDPDEGI 308
Query: 84 MFRGYSIPELHELLPKLRK-PS 104
FRGYSIPE E+LPK ++ PS
Sbjct: 309 RFRGYSIPECQEILPKAKEGPS 374
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00194260__16.m00366NADH-
ubiquinone_oxidoreductase_75_kDa_subunit,_mitochondrial_precursor,
_putative
(718 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27886 292 3e-79
36995 178 1e-68
19666 145 7e-35
33527 35 0.13
07633 33 0.44
23280 31 1.5
04982 30 3.1
13842 30 4.0
26326 30 4.3
07860 28 8.6
>27886
Length = 626
Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 135/205 (65%), Positives = 158/205 (77%), Gaps = 4/205 (1%)
Frame = -2
Query: 40 KPAKVDDSYTIFQACYENGVIVPRFCYHERLSVAGNCRMCLVEVENVPKPVAACASQVVP 99
KP V+ T+ QAC G+ +PRFCYHERLS+AGNCRMCLVEVE PKP+A+CA V+
Sbjct: 616 KPVYVEPGTTVLQACAAAGIEIPRFCYHERLSIAGNCRMCLVEVERSPKPIASCAMPVMK 437
Query: 100 GMKIKTKSEKTRIHRGNVMEFLLANHPLDCPICDQGGECDLQDISSVYGYGISRYNEY-- 157
GMK+KT S TR R VMEFLL NHPLDCPICDQGGECDLQD S +G SR+ +
Sbjct: 436 GMKVKTDSPVTRKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMNFGSDRSRFTDNAF 257
Query: 158 --KRAVEDKNYGPLVATSMNRCIHCTRCVRFATQIAGVEDLGKTGRGKAAEIGTYVEKTF 215
KRAVEDKN GPLV T M RCIHCTRC+RFA+++AGVEDLG TGRG ++GTYVEK
Sbjct: 256 SGKRAVEDKNVGPLVKTIMTRCIHCTRCIRFASEVAGVEDLGTTGRGNEMQVGTYVEKML 77
Query: 216 NTELSGNVVDVCPVGALTNAPYAFT 240
+ELSGN++D+CPVGALT+ PYAFT
Sbjct: 76 QSELSGNIIDLCPVGALTSKPYAFT 2
>36995
Length = 1047
Score = 178 bits (451), Expect(3) = 1e-68, Method: Compositional matrix adjust.
Identities = 95/183 (51%), Positives = 124/183 (67%), Gaps = 4/183 (2%)
Frame = +1
Query: 523 ALELGINPTSVNKNAKLVFILGAD-NNLRPEDIPADAFVVYFGTHGDEGAYYADIILPTA 581
A+ G+ NK K+VF+LGAD + D+P DAFV+Y G HGD+GA AD+ILP A
Sbjct: 379 AMRRGVEAVRRNK-PKVVFLLGADEGTVSRTDLPPDAFVIYQGHHGDQGAQIADVILPGA 555
Query: 582 AYTEKNATWVNTEGRVQQGRLVVMPPGDAREDWQIIRALSEEAGVPLPYDSLEELRYRVA 641
AYTEK+AT+VNTEGR Q R V PPG AR DW+IIRALSE GV LPYD L E+R R+
Sbjct: 556 AYTEKDATYVNTEGRAQLTRQAVTPPGMARNDWKIIRALSELLGVTLPYDKLSEVRQRMG 735
Query: 642 ELAPHLLKYDYIEPTIFGKVALSAQQGVKTTLSPTPIT---DYIDNFYMTDAISRASVTM 698
E++P+L++ +E F + + + VKT+L P++ + +FYMTD+ISRAS TM
Sbjct: 736 EVSPNLVRVGEVEEANFFQQSEDMGKLVKTSLGTQPLSAPQQALKDFYMTDSISRASPTM 915
Query: 699 AKC 701
AKC
Sbjct: 916 AKC 924
Score = 88.2 bits (217), Expect(3) = 1e-68, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Frame = +3
Query: 426 LKVFNIGTNQDLNYKNVHLGNSTKVLKEIADGTHPFAERLKKAKLPMIMVGASALEREDG 485
L+V +G+ DL Y HLG+S L+++A+G+HPF++ L+ AK PM++VG+S L+REDG
Sbjct: 72 LRVAMVGSPVDLTYDYDHLGDSAAELEQLANGSHPFSKVLESAKQPMVVVGSSCLQREDG 251
Query: 486 AELYNTLKVISNKTGVISEEKS-WNGFNILHKEMGRINALELG 527
L+ + ++N+ S S W N+LH+ ++ AL+LG
Sbjct: 252 VALHKAVCALANRLRTTSNAGSDWKVLNVLHRVASQVAALDLG 380
Score = 34.3 bits (77), Expect(3) = 1e-68, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 404 GCNPRYEAPVLNARILKS 421
G NPRYEAPV NAR+ KS
Sbjct: 2 GTNPRYEAPVFNARVRKS 55
>19666
Length = 466
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Frame = +2
Query: 532 SVNKNAKLVFILGAD-NNLRPEDIPADAFVVYFGTHGDEGAYYADIILPTAAYTEKNATW 590
++ K++F+L AD L + +P D FVVY G+HGD GA AD +LP AAYTEK A +
Sbjct: 11 ALQAQPKVLFLLNADAGKLTRDQLPKDCFVVYIGSHGDNGASIADAVLPGAAYTEKQAIY 190
Query: 591 VNTEGRVQQGRLVVMPPGDAREDWQIIRALSEEAGVPLPYDSLEELRYRVAELAPHLLKY 650
VNTEGR QQ V PPG AREDW+IIRALSE G PL YD+L+ELR R+ ++APHL ++
Sbjct: 191 VNTEGRSQQTHPGVAPPGMAREDWKIIRALSEVMGKPLAYDTLDELRSRLTDIAPHLTRF 370
Query: 651 DYIEPTIFGKVALSAQQGVKTTLSPTPI 678
+ G L AQ + ++S T I
Sbjct: 371 GELHQA--GNTELGAQATINKSISSTAI 448
>33527
Length = 872
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 291 TRHA--FDGLKRQRINSPMKRSKDGNYEDIFWEEAIQTISKK 330
TRH +DGLKRQR+ +P ++ G WE A I+ K
Sbjct: 3 TRHGLRYDGLKRQRLTTPFMKNAKGELVQCDWETAFFAIADK 128
>07633
Length = 995
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = -3
Query: 196 LGKTGRGKAAEIGTYVEKT-FNTELS-GNVVDVC--PVGALTNAPYAFTSRPWELKSFYT 251
LGKTG GK++ T + ++ F ELS +V C G N T P + T
Sbjct: 897 LGKTGSGKSSLGNTLLARSAFRVELSFASVTFRCQWACGLRHNVLLQVTDTPGVSDTDRT 718
Query: 252 SD-VFDTLGSAIQVDTRGPEIMRVLPRIHEEINEEWISDKT 291
D V +G +I V + GP I+ ++ + NEE+++ T
Sbjct: 717 EDEVLTEIGKSIAVASPGPHIVLMVLKCGRFTNEEYMAYTT 595
>23280
Length = 1352
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Frame = -2
Query: 64 FCYHERLSVAGNCRMCLVEVENV-------PKPVAACASQVVP 99
C + L VAG+CR+C + + + P PV A A VVP
Sbjct: 481 LCVQDHLVVAGSCRICPMHITMMWW*FTIFPGPVGASAWSVVP 353
>04982
Length = 1215
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = -1
Query: 203 KAAEIGTYVEKTFNTELSGNVVDVCPVGALTNAPYAFTSRPWELKSF-YTSDVFDTLGSA 261
K E+ V K NT +VV G N P +P L+S T + +G
Sbjct: 501 KIVEVDLAVFKAHNTRPVPHVVLSESGGH--NVPLLDLRQPVRLRSVGVTVEQTHVVGHF 328
Query: 262 IQVDTRG-----PEIMRVLPRIHEEINE 284
+QV+ RG PE+ RVL R H+ ++E
Sbjct: 327 VQVEGRGVHHLKPEVSRVLHR*HKHLHE 244
>13842
Length = 1063
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 344 GEFADIESITALKDFLNRLDVDNFEVRQHGNLKVSPDFRANYLMNSKITGVEDADVLLLV 403
G++ + + A++DF + L + V+ HG K + S TGV A +L V
Sbjct: 120 GQYGEWRRVVAVEDFFHVLLDMHVRVQNHGGYK-----NLMKTLESDYTGVPRAAILKFV 284
Query: 404 G-CNPRYEAPVLNARILKSTRKNLKVFNIGTNQDLNYK 440
C+ + P R + ST V G +D N +
Sbjct: 285 SMCSVCQKNPRQQTRAVSSTSGQRVVKLDGITRDFNRR 398
>26326
Length = 407
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Frame = -1
Query: 419 LKSTRKNLKVFNIGTNQDLNYKNVHLG----NSTKVLKEIADGTHPFAERLKKAKLPMIM 474
L++ KN+ +++ + ++ K + +G + ++ ++ DGT F KLP
Sbjct: 341 LRARNKNIYQYHVSFSPVIDSKGMRIGLLNEHKDRMPVKLFDGTILFLPE----KLPQDE 174
Query: 475 VGASALEREDGAELYNTLKVISNKTGVISEEKSWNGFNILHKE-MGRINALELG 527
++ + DGA++Y T+K N + E+ + +NIL + M +N ++G
Sbjct: 173 TQLASTRKTDGAQIYITIKFTKN----MPTEQCPHLYNILLRRIMSLLNLCQVG 24
>07860
Length = 380
Score = 28.5 bits (62), Expect = 8.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 308 KRSKDGNYEDIFWEEAIQTISKKCLNTPSDQIGAIIGEFADI 349
K+ +D + +D+F E ++ +S LN+P +++ A+ ++AD+
Sbjct: 75 KKKEDKSIDDMFTEYILRALSS--LNSPEEKLAALCKKYADL 194
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00160770__3829.m0128514-3-3_protein
(250 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12344 289 9e-79
13465 168 2e-42
33715 152 1e-37
17028 114 4e-26
15092 93 1e-19
27988 60 6e-14
04482 27 7.8
>12344
Length = 1658
Score = 289 bits (739), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 139/241 (57%), Positives = 186/241 (77%)
Frame = +2
Query: 6 REELIYLAKISEQTERFEDMLENMKQVVKIEQELSVEERNLLSVAYKNTVGSRRTAWRAI 65
RE+ +Y AK + ER+++M++ MK V ++ EL+VEERNLLSVAYKN +G+RR +WR +
Sbjct: 65 REDQVYQAKQLNRAERYDEMVKFMKIVACMDVELTVEERNLLSVAYKNVIGARRASWRIV 244
Query: 66 SSIEQKEESKGSKHISLLKDYKKKIEGELSNFCNDILELLDNHLISKSNSNEAKVFFLKM 125
SS+EQKE+ K ++ K+Y+ KIE EL + C D+L++L+ HLI +N+ E+KVF+ KM
Sbjct: 245 SSLEQKEDKCEDKK-AINKEYRMKIEKELKDICEDVLDILEKHLIVNANTGESKVFYYKM 421
Query: 126 KGDYYRYIAEYASGNTHDEAANGALQAYKQASDIATKELNTTHPIRLGLALNFSVFYYEV 185
KGDY+RY+AE+A GN EAA +L AYK ASDIA EL THPIRLGLALNFSVFYYE+
Sbjct: 422 KGDYHRYLAEFAVGNDRKEAAENSLVAYKAASDIAMIELAPTHPIRLGLALNFSVFYYEI 601
Query: 186 MNDPTKACNLAKQAFDDAIADIEHIEEDQYKDATTIMQLIRDNLTLWTSELQNDDEGGDA 245
+N P +AC LAK AFDDAIA+++ + E+ YKD+T IMQL+RDNLTLWTS++Q EGG+
Sbjct: 602 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQG--EGGEE 775
Query: 246 Q 246
Q
Sbjct: 776 Q 778
>13465
Length = 596
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 112/152 (73%), Gaps = 1/152 (0%)
Frame = +2
Query: 6 REELIYLAKISEQTERFEDMLENMKQVVKIEQELSVEERNLLSVAYKNTVGSRRTAWRAI 65
R++ +Y AK++EQ ER+++M+E MK+V + +L+VEERNLLSVAYKN +G+RR +WR +
Sbjct: 119 RDDFVYQAKLAEQAERYDEMVEAMKKVASMGNDLTVEERNLLSVAYKNVIGARRASWRIV 298
Query: 66 SSIEQKEESKGSKHIS-LLKDYKKKIEGELSNFCNDILELLDNHLISKSNSNEAKVFFLK 124
SS+EQK+ K + K Y+++IE EL C D+L+++D+HLI + E+KVF+ K
Sbjct: 299 SSVEQKDLDKPDPDKGKMTKGYRQQIETELKQICEDVLKIIDDHLIPSTTQGESKVFYYK 478
Query: 125 MKGDYYRYIAEYASGNTHDEAANGALQAYKQA 156
MKGDYYRY+AE+A+G+ EAA +L AYK+
Sbjct: 479 MKGDYYRYLAEFATGDPRKEAAESSLVAYKRP 574
>33715
Length = 434
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 92/117 (78%)
Frame = -1
Query: 123 LKMKGDYYRYIAEYASGNTHDEAANGALQAYKQASDIATKELNTTHPIRLGLALNFSVFY 182
LKMKGDYYRY++E + G E +++AYK+A+D+A + L++THPIRLGLALNFSVF+
Sbjct: 374 LKMKGDYYRYLSEVSQGEQRKENVGKSMEAYKEATDMAKERLSSTHPIRLGLALNFSVFH 195
Query: 183 YEVMNDPTKACNLAKQAFDDAIADIEHIEEDQYKDATTIMQLIRDNLTLWTSELQND 239
YE+ N P +AC LAK AFD+AI ++ + E+ YKD+T IMQL+RDNLTLWTS+ Q +
Sbjct: 194 YEIKNCPDEACRLAKIAFDEAIQCLDQLNEESYKDSTLIMQLLRDNLTLWTSDSQGE 24
>17028
Length = 1078
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
Frame = +1
Query: 141 THDEAANGALQAYKQASDIATKELNTTHPIRLGLALNFSVFYYEVMNDPTKACNLAKQAF 200
T EA A +AY +A ++A + + THP RLGLALN+SVFYYE++N KAC+LAK AF
Sbjct: 22 TEQEAVTKAQEAYNKAMEVAKQSMAPTHPNRLGLALNYSVFYYEILNSQDKACDLAKTAF 201
Query: 201 DDAIADIEHI-EEDQYKDATTIMQLIRDNLTLWTSELQNDDEGGDAQ 246
D+AI +++ E D KD+T IMQL+RDNLTLWTS+ ++ E GD Q
Sbjct: 202 DEAIQEMDQCGERDDCKDSTLIMQLLRDNLTLWTSD--SNAENGDDQ 336
>15092
Length = 692
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 9/107 (8%)
Frame = +3
Query: 5 TREELIYLAKISEQTERFEDMLENMKQVVKIE---------QELSVEERNLLSVAYKNTV 55
+E ++ AKI+EQ ER++DM E+M + V +E L EERNLLSVAYKN V
Sbjct: 228 PKERQVHAAKIAEQAERYDDMAESMHKCV-VEGYSANGDKSSTLDNEERNLLSVAYKNVV 404
Query: 56 GSRRTAWRAISSIEQKEESKGSKHISLLKDYKKKIEGELSNFCNDIL 102
G+RR+AWR ISSIEQK E+ K + + K Y++K+E EL C +L
Sbjct: 405 GARRSAWRVISSIEQKTEN-NDKKLEMAKKYREKVEKELKEICTQVL 542
>27988
Length = 448
Score = 60.1 bits (144), Expect(2) = 6e-14, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = +3
Query: 46 LLSVAYKNTVGSRRTAWRAISSIEQKEESKGSKHISLLKDYKKKIEGELSNFCNDILEL 104
L SVAYKN VG+RR++WR I IEQK E++ K + + ++K +E EL CN++L+L
Sbjct: 276 LFSVAYKNVVGARRSSWRVICMIEQKAETQPRKEKA--RAFRKDVEKELDATCNEVLKL 446
Score = 33.5 bits (75), Expect(2) = 6e-14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +2
Query: 7 EELIYLAKISEQTERFEDMLENMKQVVKIEQELSVEER 44
++LI AK++EQ ER++DM + MK+V + ++ L E R
Sbjct: 158 KDLISFAKLAEQAERYDDMAKAMKKVTENDKTLMQESR 271
>04482
Length = 2393
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 91 EGELSNFCNDILELLDNHLISKSNSNEAKVFFL 123
+ +N CND LLD+H+ + S+ + F+
Sbjct: 932 QSHYANICNDAFNLLDHHISIATFSHACCILFM 834
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00193740__16.m00313ribosomal_protein_S5_containing_protein
(296 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03618 286 5e-78
33393 117 6e-27
23810 31 0.59
04332 28 3.3
>03618
Length = 1609
Score = 286 bits (733), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 144/246 (58%), Positives = 182/246 (73%), Gaps = 5/246 (2%)
Frame = -2
Query: 20 RRGDKNDWQPQTKLGRLVKYGKISSLDEIFKYSIPIKEPEIIDHFYPKNKDVQAEHKLME 79
+ G+K +W P TKLGRLVK GKI SL+EI+ +S+PIKE EIID F P L +
Sbjct: 789 KEGEK-EWVPVTKLGRLVKDGKIKSLEEIYMFSLPIKEFEIIDLFLPSGT-------LKD 634
Query: 80 EVLQITPVQKQTQAGQRTRFKGFVVVGDSNGHIGLGWKVAKEVQGAIKGAITHAKLNMVP 139
EVL+I PVQKQT+AGQRTRFK FV VGD +GH+GLG K +KEV AI+GAI AKL++VP
Sbjct: 633 EVLKIMPVQKQTRAGQRTRFKAFVAVGDHSGHVGLGVKCSKEVATAIRGAIILAKLSVVP 454
Query: 140 VRKGYWGNKIANAHTIPQKITGKSGSVRIRLVPAPRGTGIVAAPIPKKVLQFAGVQDIYT 199
VR+GYWGNKI HT+P K+TGK GSV +RL+PAPRGTGIV+AP+PKK+L AG+ D YT
Sbjct: 453 VRRGYWGNKIGKPHTVPCKVTGKCGSVVVRLIPAPRGTGIVSAPVPKKLLTMAGIDDCYT 274
Query: 200 SSQGCTRTRGNFLKATYYALANTYRYLTPDFWGKPEDNELPFETFSEFL---HTK--AQK 254
SS+G T T GNF KATY A++ TY YLTPD W + + P++ F+++L H++ QK
Sbjct: 273 SSRGATATLGNFAKATYAAISKTYSYLTPDLWKETVFTKSPYQEFTDYLMKNHSRVAVQK 94
Query: 255 KEPKQY 260
+E K Y
Sbjct: 93 QEQKVY 76
>33393
Length = 615
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 65/81 (80%)
Frame = -3
Query: 82 LQITPVQKQTQAGQRTRFKGFVVVGDSNGHIGLGWKVAKEVQGAIKGAITHAKLNMVPVR 141
Q PVQKQT+AGQRTRFK FV VGD +GH+GLG K +KEV AI+GAI AKL++VPVR
Sbjct: 244 CQSRPVQKQTRAGQRTRFKAFVAVGDHSGHVGLGVKCSKEVATAIRGAIILAKLSVVPVR 65
Query: 142 KGYWGNKIANAHTIPQKITGK 162
+GYWGNKI HT+P K+TGK
Sbjct: 64 RGYWGNKIGKPHTVPCKVTGK 2
>23810
Length = 878
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 131 THAKLNMVPVRKGYWGNKIANAHTIPQKITGKSGSVRIRLVPAPRGTGIVAAPIPKKVL 189
HA L VPV G + + + G + +R++P P+G G+V + +K+L
Sbjct: 496 AHADLQTVPVAAGRHHQRRGRHQEVQRVQAGLQAAADLRVLPRPQGRGMVQVQVSRKLL 320
>04332
Length = 1134
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 131 THAKLNMVPVRKGYWGNKIANAHTIPQKITGKSGSVRIRLVPAPRGTGIVAAPI-PKKVL 189
HA L VPV G + + + G + +R++P P+G G+V + P+ V
Sbjct: 561 AHADLQTVPVAAGRHHQRRGRHQEVQRVQAGLQAAADLRVLPRPQGRGMVQVQVSPRGVR 740
Query: 190 QFAG 193
Q +G
Sbjct: 741 QASG 752
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00055990__3707.m00028enoyl-
CoA_hydratase/isomerase_family_protein
(287 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13881 281 2e-76
04595 201 9e-62
04023 87 1e-17
36681 80 6e-16
26426 68 2e-13
11398 67 1e-11
37516 42 2e-04
12386 37 0.013
>13881
Length = 1594
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 131/246 (53%), Positives = 180/246 (73%)
Frame = +3
Query: 41 ENQVALVTLNRPKALNALCDGLINELNSTLEQLNKDPKVGAIVITGSEKAFAAGADIKEM 100
++ VA+V +NRP+ NAL D L+ ++ + L+QL++D VG IV+TGS++AFAAGAD+ ++
Sbjct: 132 KHNVAVVRMNRPRTFNALSDALMADVTAALQQLDQDNSVGCIVLTGSDRAFAAGADVPDL 311
Query: 101 KDKTFPYTYSVNMLASWDNLTTIKKPIIAAVNGYALGGGCELAMMCDIIVAGTSAKFGQP 160
KTF + A + +++ +KPIIAAVNGYALGGG E+AMMCDI+ AG A F QP
Sbjct: 312 HKKTFEDVIEQDFPAQFYSISKCRKPIIAAVNGYALGGGXEIAMMCDIVYAGDKALFAQP 491
Query: 161 EILIGTIPGCGGTQRLTRAIGKSKAMELVLTGDQIDAHTAEKHGLVSKVVEPTETVNEAV 220
E+ +GT+PG GGTQRL RA+GKSKAME+V++ ++I AH AE+ GLVSKV +E ++ AV
Sbjct: 492 EVTLGTLPGAGGTQRLIRAVGKSKAMEMVISANKITAHEAERMGLVSKVFPASEVLDAAV 671
Query: 221 KIAAKIASLSQPIVAMAKEAVNQAHNLPLKDGLQYEKRLFHSTFATQDRKEGMTAFAEKR 280
+ A KIA S+ VA+ KEAVN + + L GL+ EKR FH TF T DR+EGMTAF EKR
Sbjct: 672 QTAEKIAGFSRVAVALCKEAVNASQEMSLSQGLRLEKRFFHXTFGTNDREEGMTAFVEKR 851
Query: 281 KPQWKN 286
+P + +
Sbjct: 852 EPNFTH 869
>04595
Length = 1947
Score = 201 bits (512), Expect(2) = 9e-62, Method: Compositional matrix adjust.
Identities = 97/151 (64%), Positives = 114/151 (75%)
Frame = +1
Query: 136 LGGGCELAMMCDIIVAGTSAKFGQPEILIGTIPGCGGTQRLTRAIGKSKAMELVLTGDQI 195
G GCELAMMCDII AG A+FGQPEI +GTIPG GGTQRL RA+GKSKAME+VLTGD+I
Sbjct: 118 FGWGCELAMMCDIIYAGDKAQFGQPEIALGTIPGAGGTQRLVRAVGKSKAMEMVLTGDRI 297
Query: 196 DAHTAEKHGLVSKVVEPTETVNEAVKIAAKIASLSQPIVAMAKEAVNQAHNLPLKDGLQY 255
A AEK GLVS+VV E V+ AVK A KIA S+ VA+ KEAVN + + L +G+ +
Sbjct: 298 SAQDAEKAGLVSRVVPAAELVDTAVKTAEKIAGFSKLTVALCKEAVNASQEMSLAEGIHF 477
Query: 256 EKRLFHSTFATQDRKEGMTAFAEKRKPQWKN 286
EKR FH+TF T DR EGMTAF EKRKP + +
Sbjct: 478 EKRFFHATFGTNDRMEGMTAFVEKRKPNFTD 570
Score = 53.1 bits (126), Expect(2) = 9e-62, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +2
Query: 98 KEMKD-KTFPYTYSVNMLASWDNLTTIKKPIIAAVNGYALGG 138
KEM+ KTF TY+ N L WD + +KPIIAAVNGYALGG
Sbjct: 2 KEMQRMKTFAETYNSNFLMDWDAVAKCRKPIIAAVNGYALGG 127
>04023
Length = 997
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Frame = +2
Query: 140 CELAMMCDIIVAGTSAKFGQPEILIG---TIPGCGGTQRLTRAIGKSKAMELVLTGDQID 196
C+L CDI VA ++F P + +G T PG + RA+ + A+E++ TG I
Sbjct: 2 CQLVATCDIAVATEQSRFATPGVHVGLFCTTPGVA----VGRAVPRKVALEMMFTGQPIS 169
Query: 197 AHTAEKHGLVSKVVEPTETVNEAVKIAAKIASLSQPIVAMAKEAVNQAHNLPLKDGLQYE 256
A A HGLVSKVV +E +IA KI S+ + A+ K A +L + ++
Sbjct: 170 AQDALLHGLVSKVVPEDRLQDETQQIAGKICEFSREVTAVGKAAFYAQISLEKRAAYRFA 349
Query: 257 KRLFHSTFATQDRKEGMTAFAEKRKPQWKN 286
+++ D +EG+ AF +KRKP W +
Sbjct: 350 EKVMVDNLQLDDCQEGIGAFIDKRKPTWXS 439
>36681
Length = 1210
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 13/230 (5%)
Frame = +3
Query: 46 LVTLNRPKALNALCDGLINELNSTLEQLNKDPKVGAIVITGS-EKAFAAGADIK------ 98
++ LNRPKALNAL +I + + + DP + +VI G+ +KAF AG DI+
Sbjct: 90 VIVLNRPKALNALNLNMIRHIYPKMLEWETDPNISCVVIKGAGDKAFCAGGDIRAVTESG 269
Query: 99 ----EMKDKTFPYTYSVNMLASWDNLTTIKKPIIAAVNGYALGGGCELAMMCDIIVAGTS 154
++ F Y +N + + +KP IA ++G +GGG L++ VA
Sbjct: 270 KVGGDLGKDFFKEEYMLNY-----KIGSYRKPYIAVIDGITMGGGVGLSVHGKYRVATEK 434
Query: 155 AKFGQPEILIGTIPGCGGTQRLTRAIGKSKAMELVLTGDQIDAHTAEKHGLVSKVVEPTE 214
F PE IG P GG L G+ L LTG ++ G+ + V+
Sbjct: 435 TVFAMPETAIGLFPDVGGGHFLPWLQGRL-GTYLALTGFRLKGRDVFHAGVATHFVQ--- 602
Query: 215 TVNEAVKIAAKIASLSQPIVAMAKEAVNQAHNLPLKDGLQYEKRL--FHS 262
A K+A L Q ++ LP LQ EK L +HS
Sbjct: 603 --------AEKLAELEQSLM-----------QLPEASHLQVEKVLDSYHS 695
>26426
Length = 413
Score = 67.8 bits (164), Expect(2) = 2e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Frame = +2
Query: 49 LNRPKALNALCDGLINELNSTLEQLNKDPKVGAIVITG-SEKAFAAGADIKEMKDKTFPY 107
LNRP A NA G++ LE + D +V+ + F AGAD+KE K T
Sbjct: 2 LNRPAAKNAFSRGMVTTFRDILE*IKSDNDSRVVVLRSLTPGIFCAGADLKERKGMTTEE 181
Query: 108 T--YSVNMLASWDNLTTIKKPIIAAVNGYALGGGCELAMMCDIIVAGTSAKF 157
T + + A ++ + P+IAA++G ALGGG E+A+ CDI A ++AK
Sbjct: 182 TKQFVTELRALLVSIEQLPMPVIAALDGAALGGGLEMALACDIRTAASNAKM 337
Score = 24.6 bits (52), Expect(2) = 2e-13, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 161 EILIGTIPGCGGTQRLTRAI 180
E + IPG GGT RL R +
Sbjct: 345 ETRLAIIPGAGGTHRLPRIL 404
>11398
Length = 3234
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = -3
Query: 136 LGGGCELAMMCD--IIVAGTSAKFGQPEILIGTIPGCGGTQRLTRAIGKSKAMELVLTGD 193
LGGG E+A+ C + VA PE+++G +PG GGTQRL + + A++++LTG
Sbjct: 3226 LGGGFEVALACQYRVAVADKKTTVALPEVMLGLLPGAGGTQRLPKLVPIPTALDMMLTGK 3047
Query: 194 QIDAHTAEKHGLVSKVVEP 212
I A A+K GLV ++V+P
Sbjct: 3046 TIKADRAKKMGLVDQLVQP 2990
>37516
Length = 358
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = -1
Query: 120 LTTIKKPIIAAVNGYALGGGCELAMMCDIIVAGTSAKFGQPEILIGTIPGCGGTQRLTRA 179
L KP+IA VNG A+G L +CD + A F P + P + R
Sbjct: 247 LIDYPKPVIALVNGPAVGIAVTLLGLCDAVYCSDRATFHTPFTQLAQNPEGCSSYIFPRL 68
Query: 180 IGKSKAMELVLTGDQIDAHTA 200
+G +KA E++L +I A A
Sbjct: 67 MGGAKATEMLLFNQKITAQEA 5
>12386
Length = 2140
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +3
Query: 195 IDAHTAEKHGLVSKVVE----PTETVNEAVKIAAKIASLSQPIVAMAKEAVNQAHNLPLK 250
+ H A+K G+V VVE T + AV++A +I + MAK ++NQ + L
Sbjct: 3 LXGHQAKKMGVVXHVVEQNSEETAAYDHAVQLAQEILLQDTLSLRMAKMSINQGIEVDLN 182
Query: 251 DGLQYEKRLFHSTFAT 266
G+++E+ + T T
Sbjct: 183 SGMKFEESYYSGTIPT 230
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01207660__274.m00036Ribosomal_protein_L13_containing_protein
(779 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01060 283 3e-76
14126 248 6e-66
01756 217 1e-56
01707 204 1e-52
01966 180 5e-48
29581 181 8e-46
04591 171 8e-43
32000 160 1e-39
04138 136 4e-32
20559 117 8e-32
23319 110 2e-24
24241 103 3e-22
00300 99 6e-21
18921 98 1e-20
03508 93 5e-19
12721 90 4e-18
13592 89 6e-18
06405 84 3e-16
09606 82 6e-16
17975 82 9e-16
28638 58 4e-15
14420 76 6e-14
03294 75 8e-14
03240 75 1e-13
01718 74 3e-13
19761 73 4e-13
12453 72 7e-13
21433 63 1e-12
04852 72 1e-12
27546 70 4e-12
15910 69 6e-12
13066 66 4e-11
00392 66 4e-11
14477 64 2e-10
19301 64 3e-10
18287 64 3e-10
21808 63 4e-10
07940 59 5e-09
01106 57 2e-08
32359 49 4e-08
31489 56 6e-08
19094 55 9e-08
00715 55 1e-07
17253 54 2e-07
18484 54 3e-07
26711 54 3e-07
26560 54 3e-07
21079 53 5e-07
13212 53 5e-07
30755 52 1e-06
16003 52 1e-06
20640 50 2e-06
27405 50 2e-06
11780 50 3e-06
14116 50 4e-06
22005 50 5e-06
31885 49 6e-06
11185 49 6e-06
16708 49 6e-06
12786 49 1e-05
28157 47 2e-05
11404 46 4e-05
07291 46 7e-05
00638 44 3e-04
01392 42 3e-04
38316 44 3e-04
31789 43 5e-04
02638 43 5e-04
17300 43 6e-04
26156 42 7e-04
36481 42 0.001
21800 42 0.001
29360 42 0.001
12672 41 0.002
18401 39 0.008
37602 39 0.011
06358 38 0.012
15549 38 0.012
00394 38 0.013
26009 37 0.038
18481 36 0.063
07836 32 1.3
20152 31 2.1
13078 30 4.8
17806 30 4.9
19670 29 5.8
>01060
Length = 1800
Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 197/303 (65%), Gaps = 1/303 (0%)
Frame = +1
Query: 5 NSKLERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKE 64
+ L K+GEGTYGVVYK R + T A+KKIRL ++G+PS+AIREI++L+E
Sbjct: 61 ETALSDLTDFQKIGEGTYGVVYKCRHRATGRKLAMKKIRLRGSEDGVPSSAIREIAMLRE 240
Query: 65 LQHPNVVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKG-LDPHIIKSLLYQLLKGIE 123
L+H N+V L DVI +++L LVFEF+ DLK +++ F + LD ++KS ++Q++ GI
Sbjct: 241 LRHTNIVCLEDVIMEDERLFLVFEFLSMDLKMYIDKFPEGVVLDRRLVKSYVFQIVTGIX 420
Query: 124 VCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLG 183
CH+ +I+HRDLKPQNLLI+ +K+ADFG+AR +PV+ YTHEVVTLWYR P++L+G
Sbjct: 421 FCHQRRIVHRDLKPQNLLINHTGAIKIADFGMARTFALPVRAYTHEVVTLWYRAPEILMG 600
Query: 184 SKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTPCVEKWPGLADLPNW 243
+ YST +D+WSIG IFA+M+ P+F G+SE D+L +IF++ GTP + WP LP +
Sbjct: 601 ASKYSTPVDVWSIGTIFADMLIRTPIFKGDSEIDQLFKIFRIIGTPTEQTWPEFHKLPAF 780
Query: 244 KADAFEKYPGEPLQNICPXXXXXXXXXXXXXXRCNPQERITAKAGLEHPYFNDIPDTLKK 303
F + L +C+P +RI+ K L+H YF ++ ++K
Sbjct: 781 NG-MFPLWKEGKLSETLTDLDSLGLDLIERTLKCDPAQRISCKKMLQHAYFLNVDTSVKP 957
Query: 304 MNM 306
+++
Sbjct: 958 VDV 966
>14126
Length = 1265
Score = 248 bits (634), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 135/308 (43%), Positives = 188/308 (61%), Gaps = 9/308 (2%)
Frame = +3
Query: 4 KNSKLERYEKLNKLGEGTYGVVYKARE-KTTKELYALKKIRLESEDEGIPSTAIREISLL 62
++S ++YE++ +G G YG VYKAR+ + E A+K+IRL + +EG+P AIREIS+L
Sbjct: 174 RDSTEQKYEEVAVIGNGAYGTVYKARDLRNQGEFVAMKRIRLNNTEEGMPMMAIREISML 353
Query: 63 KELQ---HPNVVRLHDVIHSNK-----KLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSL 114
K+L+ HPNVVRL DV H+ +L LVFE+++ DL ++ GL P IK L
Sbjct: 354 KQLEQYEHPNVVRLLDVSHNTITDREIRLNLVFEYIEHDLATYLAKCPSPGLGPDRIKDL 533
Query: 115 LYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLW 174
+ QLL G++ H N+I+HRDLKPQNLLISK+ LKLADFGLAR + T VVTLW
Sbjct: 534 MLQLLNGVDFLHSNRIVHRDLKPQNLLISKDGRLKLADFGLARIYSFHMA-LTTVVVTLW 710
Query: 175 YRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTPCVEKW 234
YR P+VL+ ++ Y TS+DIWS GCIFAE+ + LF G+SE D+LK+IF++ G P W
Sbjct: 711 YRSPEVLMQAE-YGTSVDIWSCGCIFAELFTRRALFKGSSEFDQLKKIFEVIGLPPAGDW 887
Query: 235 PGLADLPNWKADAFEKYPGEPLQNICPXXXXXXXXXXXXXXRCNPQERITAKAGLEHPYF 294
P + ++F P PLQ + P RI+++ L HPY
Sbjct: 888 PEGVSV---HRNSFRPTPPVPLQTLVPEMDPQAKDLMEKMLVFKSGRRISSRESLLHPYL 1058
Query: 295 NDIPDTLK 302
D D+++
Sbjct: 1059RDDLDSIR 1082
>01756
Length = 1858
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 158/242 (65%), Gaps = 11/242 (4%)
Frame = -3
Query: 10 RYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPN 69
+YEKL K+G+GT+G V+KAR K TK++ A+KK+ +++E EG P TA+REI +L+ L H N
Sbjct: 1739 KYEKLAKIGQGTFGEVFKARCKKTKQVVAMKKVLMDNEKEGFPITALREIKILQLLNHEN 1560
Query: 70 VVRLHDVIHSNKK--------LVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKG 121
VV L ++ + LVFEF + DL ++N P I K ++ QL+ G
Sbjct: 1559 VVDLIEICSTKATSANRYKSMFYLVFEFCEHDLAGLLSNMSVVFNLPEI-KEVMKQLMNG 1383
Query: 122 IEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKN---YTHEVVTLWYRPP 178
+ H+NKILHRD+K N+LI+K+ +LKLADFGLARA + ++ YT+ VVTLWYRPP
Sbjct: 1382 LYYIHRNKILHRDMKAANILITKQGVLKLADFGLARAFSVNLRQPNRYTNRVVTLWYRPP 1203
Query: 179 DVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTPCVEKWPGLA 238
++LLG ++YST+ID W GCI AEM P+ G +E ++L I +L G+ E WPG+
Sbjct: 1202 ELLLGDRNYSTAIDQWGAGCIMAEMWTRNPIMQGTTEQNQLTLITQLCGSITPEVWPGVE 1023
Query: 239 DL 240
L
Sbjct: 1022 RL 1017
>01707
Length = 757
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 150/223 (67%), Gaps = 1/223 (0%)
Frame = +1
Query: 6 SKLERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEG-IPSTAIREISLLKE 64
++E+YEK+ K+GEG+YGVV+K R K T +L A+KK +ESED+ I A+REI +LK+
Sbjct: 55 DRMEKYEKIGKIGEGSYGVVFKCRNKETSQLVAIKKF-VESEDDPLIKKIAMREIRMLKQ 231
Query: 65 LQHPNVVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEV 124
L+HPN+VRL +V K+L LVF++VD L ++ + +GL ++K ++YQ L +
Sbjct: 232 LKHPNLVRLIEVFRRKKRLHLVFDYVDHTLLNELDRYP-RGLPEPMVKRIIYQTLLAVNF 408
Query: 125 CHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLGS 184
CH+ +HRD+KP+N+LI+++ +KL DFG AR P YT V T WYR P++L+G
Sbjct: 409 CHQYNTIHRDVKPENILITRQGQVKLCDFGFARILTGPGDEYTDYVATRWYRAPELLVGD 588
Query: 185 KHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTG 227
Y +D+W+IGC+FAE++ + L+PG S+ D+L I K G
Sbjct: 589 TQYGPPVDVWAIGCVFAELLTGQALWPGRSDVDQLHLIRKTLG 717
>01966
Length = 1735
Score = 180 bits (456), Expect(2) = 5e-48, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 124/173 (71%), Gaps = 1/173 (0%)
Frame = -1
Query: 28 AREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHDVIHSNKKLVLVF 87
R + T A+KKIRL ++G+PS+AIREI++L+EL+H N+V L DVI +++L LVF
Sbjct: 1654 CRHRATGRKLAMKKIRLRGSEDGVPSSAIREIAMLRELRHTNIVCLEDVIMEDERLFLVF 1475
Query: 88 EFVDQDLKKFMNNFKDKG-LDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKEC 146
EF+ DLK +++ F + LD ++KS ++Q++ GI CH+ +I+HRDLKPQNLLI+
Sbjct: 1474 EFLSMDLKMYIDKFPEGVVLDRRLVKSYVFQIVTGINFCHQRRIVHRDLKPQNLLINHTG 1295
Query: 147 ILKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLGSKHYSTSIDIWSIGCI 199
+K+ADFG+AR +PV+ YTHEVVTLWYR P++L+G + ++ W+ G +
Sbjct: 1294 AIKIADFGMARTFALPVRAYTHEVVTLWYRAPEILMGPQ---STPPXWTCGAL 1145
Score = 30.4 bits (67), Expect(2) = 5e-48, Method: Composition-based stats.
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = -2
Query: 12 EKLNKLGEGTYGVVY 26
++L+K+GEGTYGVVY
Sbjct: 1701 DRLSKIGEGTYGVVY 1657
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%)
Frame = -3
Query: 183 GSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTPCVEKWPGLADLPN 242
G+ YST +D+WSIG IFA+M+ P+F G+SE D+L +IF++ GTP + WP LP
Sbjct: 1187 GASKYSTPVDVWSIGTIFADMLIRTPIFKGDSEIDQLFKIFRIIGTPTEQTWPEFHKLPA 1008
Query: 243 WKADAFEKYPGEPLQNICPXXXXXXXXXXXXXXRCNPQERITAKAGLEHPYFNDIPDTLK 302
+ F + L +C+P +RI+ K L+H YF ++ ++K
Sbjct: 1007 FNG-MFPLWKEGKLSETLTDLDSLGLDLIERTLKCDPAQRISCKKMLQHAYFLNVDTSVK 831
Query: 303 KMNM 306
+++
Sbjct: 830 PVDV 819
>29581
Length = 1278
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 144/249 (57%), Gaps = 2/249 (0%)
Frame = -2
Query: 52 PSTAIREISLLKELQHPNVVRLHDVI--HSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPH 109
PS + L L+H N+V+L +V+ S L LV E+ +QDL ++N +
Sbjct: 1223 PSVVCVRSTFLLNLRHQNIVQLQEVVVGKSLDSLFLVMEYCEQDLASLLDNMPAPFSESQ 1044
Query: 110 IIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHE 169
+ K ++ QLLKG+ H+ I+HRDLK NLL++ + +K+ADFGLAR G P K T +
Sbjct: 1043 V-KCIVLQLLKGLRYLHEAFIIHRDLKVSNLLMTDKGCVKIADFGLARNYGKPQKPMTPK 867
Query: 170 VVTLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTP 229
VVTLWYR P++L GSK +ST+ID+WS GCI E++ KPL PG S+ +++ I +L GTP
Sbjct: 866 VVTLWYRAPELLFGSKTHSTAIDMWSAGCILGELLGHKPLMPGRSDLQQIELIMELLGTP 687
Query: 230 CVEKWPGLADLPNWKADAFEKYPGEPLQNICPXXXXXXXXXXXXXXRCNPQERITAKAGL 289
WPG + LP ++ +K P L++ P +PQ+R TA+ L
Sbjct: 686 NDTIWPGFSQLPAFEQFTLKKQPYNNLRHTFPWLSESGIRLLNGLFMYHPQKRATAEDCL 507
Query: 290 EHPYFNDIP 298
EH YF + P
Sbjct: 506 EHSYFKEQP 480
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 35 ELYALKKIRLESEDEGIPSTAIREISLLKELQHP 68
E+ ALKK+R+ E GIP + +REI++ + P
Sbjct: 1275 EIVALKKMRMTGERYGIPISGLREINIFAQSATP 1174
>04591
Length = 1117
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 124/200 (62%), Gaps = 8/200 (4%)
Frame = -2
Query: 49 EGIPSTAIREISLLKELQHPNVVRLHDVIHSN--------KKLVLVFEFVDQDLKKFMNN 100
EG P TA+REI +L++L+H NVV+L ++ H+ L+FE+ D DL +NN
Sbjct: 1098 EGFPITALREIKILQQLEHENVVQLQEICHTQAGPYNRYKSTFYLIFEYCDYDLAGLLNN 919
Query: 101 FKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASG 160
+ K K+L+ QLL G+ H +ILHRD+K N+L++++ +LKLADFGL+R
Sbjct: 918 LRVK-FSLADKKNLMSQLLNGLFYIHTKQILHRDIKAANILLTRDGVLKLADFGLSRP-W 745
Query: 161 IPVKNYTHEVVTLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELK 220
+ K T+ VVTLWYRPP++LLG + Y ID+W +GCI AEM + KPL G SE +L
Sbjct: 744 VKSKRLTNRVVTLWYRPPELLLGEREYGPEIDMWGVGCIMAEMWSRKPLMQGRSEQHQLS 565
Query: 221 RIFKLTGTPCVEKWPGLADL 240
I L G+ E WPG+ L
Sbjct: 564 LITDLCGSLNAEVWPGVTKL 505
>32000
Length = 644
Score = 160 bits (406), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/150 (48%), Positives = 101/150 (67%)
Frame = -1
Query: 148 LKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLK 207
+K+ADFGLAR G+PV+ YTHEV+TLWYR P++LLG + YS +DIWS+GCIF EM+ +
Sbjct: 572 MKIADFGLARVFGLPVRTYTHEVITLWYRAPEILLGCRFYSVPVDIWSLGCIFVEMMTRR 393
Query: 208 PLFPGNSETDELKRIFKLTGTPCVEKWPGLADLPNWKADAFEKYPGEPLQNICPXXXXXX 267
LFPG+SE D+L RIF+ GTP + WPG++ LP++K F K+P + L+ +
Sbjct: 392 ALFPGDSEIDQLYRIFRTLGTPDEKVWPGVSKLPDYKP-TFPKWPLKNLETVVSLSKVGL 216
Query: 268 XXXXXXXXRCNPQERITAKAGLEHPYFNDI 297
NP RI+A++ + HPYFND+
Sbjct: 215 DLLKRMLTY-NPNRRISARSAMRHPYFNDM 129
>04138
Length = 800
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Frame = +1
Query: 126 HKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKN---YTHEVVTLWYRPPDVLL 182
H+NKILHRD+K N+LI+K+ +LKLADFGLARA + ++ YT+ VVTLWYRPP++LL
Sbjct: 64 HRNKILHRDMKAANILITKQGVLKLADFGLARAFSVNLRQPNRYTNRVVTLWYRPPELLL 243
Query: 183 GSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTPCVEKWPGLADL 240
G ++YST+ID W GCI AEM P+ G +E ++L I +L G+ E WPG+ L
Sbjct: 244 GDRNYSTAIDQWGAGCIMAEMWTRNPIMQGTTEQNQLTLITQLCGSITPEVWPGVTQL 417
>20559
Length = 430
Score = 117 bits (292), Expect(2) = 8e-32, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 70/81 (86%)
Frame = -2
Query: 7 KLERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQ 66
K+++YEKL K+GEGTYG V+KA+ + T E+ ALK++RL+ +DEG+PS+A+REI LLKEL+
Sbjct: 381 KMQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELK 202
Query: 67 HPNVVRLHDVIHSNKKLVLVF 87
H N+VRLHDV+HS +KL LVF
Sbjct: 201 HRNIVRLHDVLHSERKLTLVF 139
Score = 39.7 bits (91), Expect(2) = 8e-32, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = -3
Query: 87 FEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGI 122
FE+ DQDLKK+ + + +DP +KS L+QLL+G+
Sbjct: 140 FEYCDQDLKKYFDTCNGE-IDPDTVKSFLHQLLRGL 36
>23319
Length = 2235
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Frame = +3
Query: 178 PDVLLGSKHYSTSIDIWSIGCIFAEMVNL-KPLFPGNSETDELKRIFKLTGTPCVEKWPG 236
PDV +K YSTSID+WS GCIFAE+ N +PLFPGN + D+LKRIFKL GTP ++WPG
Sbjct: 3 PDVYX-AKMYSTSIDMWSAGCIFAELANAGRPLFPGNDDDDQLKRIFKLLGTPTEDQWPG 179
Query: 237 LADLPNWKADAFEKY-PGEPLQNICPXXXXXXXXXXXXXXRCNPQERITAKAGLEHPYFN 295
+ LPN++ F Y Q + P C P +R++A L+HPYF
Sbjct: 180 MTQLPNYR--MFPMYHVTTTWQQVVPKLNSKGRDLLQCLLVCCPSDRMSADEALQHPYFA 353
Query: 296 DIPDTLKK 303
D+P +++
Sbjct: 354 DLPPLVRQ 377
>24241
Length = 413
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/115 (45%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Frame = -2
Query: 12 EKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPN-V 70
++L+K+GEGTYGVVYK R + T A+KKIRL ++G+PS+AIREI++L+EL+H +
Sbjct: 334 DRLSKIGEGTYGVVYKCRHRATGRKLAMKKIRLRGSEDGVPSSAIREIAMLRELRHTQXL 155
Query: 71 VRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVC 125
V L DVI +++L LVFEF+ DLK +++ F + G+ ++ L +++ GI C
Sbjct: 154 VCLEDVIMEDERLFLVFEFLSMDLKMYIDKFPE-GV---VLDRRLVKIVTGINFC 2
>00300
Length = 2318
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 9/207 (4%)
Frame = -1
Query: 10 RYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPN 69
R+++ NK+GEG +G VY A +T EL ALK+++ + D EI + + +QH N
Sbjct: 1655 RWQRGNKIGEGQFGKVYTAVNMSTGELMALKEMKFQPNDLQQLREMCDEIKIFEGIQHEN 1476
Query: 70 VVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNK 129
+V+ + V ++++ E+ D + GL ++I+ +++ + H+N
Sbjct: 1475 LVKYYGVEVHKDEMLMFMEYCDTGT---IEEAAKMGLPEYLIRRYTREIVLAVNHLHENS 1305
Query: 130 ILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYT------HEVV-TLWYRPPDVLL 182
I+HRD+K N+ ++ +KL DFG + + +K++T H +V T Y P+V
Sbjct: 1304 IVHRDIKGANIFLTSNGHVKLGDFGCS----VKLKSHTTMPGEFHNLVGTTAYMAPEVFT 1137
Query: 183 GSKH--YSTSIDIWSIGCIFAEMVNLK 207
+ Y + DIWS+GC+ EM K
Sbjct: 1136 QNDQGGYGRAADIWSLGCVVIEMATGK 1056
>18921
Length = 697
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 105/198 (53%)
Frame = +2
Query: 11 YEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNV 70
++ L KLGEG+YG V+K+ K T ++ A+K++ ++++ + I I+EIS++++ +
Sbjct: 35 FDILGKLGEGSYGSVFKSLHKETGQVLAIKQVPVDTDLQEI----IKEISIMQQCDSKYI 202
Query: 71 VRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKI 130
V+ + N L +V E+ + ++K L I ++LY LKG+ H +
Sbjct: 203 VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRNKTLVEREIATILYYTLKGLXYLHSRRK 382
Query: 131 LHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLGSKHYSTS 190
+HRD+K N+L++ E KLADFG+A + + T ++ P+V+ Y
Sbjct: 383 IHRDIKAGNILLNNEGHAKLADFGVAGQLTDTMAKRNTVIGTPYWMAPEVIQ-EIGYDCV 559
Query: 191 IDIWSIGCIFAEMVNLKP 208
DIWS+G EM KP
Sbjct: 560 ADIWSLGITALEMAEGKP 613
>03508
Length = 1463
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 5/215 (2%)
Frame = +1
Query: 2 VMKNSKLERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISL 61
V++ + Y+ + KLG G Y V++A T E K + + L
Sbjct: 568 VVEWGNQDDYQIVRKLGRGKYSEVFEAINVTNNE----KCVIKILKPVKKKKIKREIKIL 735
Query: 62 LKELQHPNVVRLHDVIHS--NKKLVLVFEFVDQ-DLKKFMNNFKDKGLDPHIIKSLLYQL 118
NV+ L ++ ++ L+FE V+ D K+ F D + I+ LY+L
Sbjct: 736 ENLRGGTNVITLLAIVKDPVSRTPALIFEHVNNTDFKQLYQTFTD-----YDIRFYLYEL 900
Query: 119 LKGIEVCHKNKILHRDLKPQNLLISKEC-ILKLADFGLARASGIPVKNYTHEVVTLWYRP 177
+K ++ CH I+HRD+KP N++I E L+L D+GLA P Y V + +++
Sbjct: 901 MKALDFCHSMGIMHRDVKPHNVMIDHENKKLRLIDWGLAEFYH-PGMEYNVRVASRYFKG 1077
Query: 178 PDVLLGSKHYSTSIDIWSIGCIFAEMVNLK-PLFP 211
P++LL + Y S+D+WS+GC+FA M+ K PL P
Sbjct: 1078PELLLDYQMYDYSLDMWSLGCMFASMIFRKEPLLP 1182
>12721
Length = 821
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 107/208 (51%), Gaps = 1/208 (0%)
Frame = +1
Query: 16 KLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHD 75
K+GEG+ G+V A + +++ A+KK+ L + E+ ++++ HPN+V +++
Sbjct: 109 KIGEGSTGIVCIATSRDGRQM-AVKKMDLRKQQRR--ELLFNEVVVMRDYHHPNIVEMYN 279
Query: 76 VIHSNKKLVLVFEFVDQD-LKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRD 134
N +L +V EF++ L + N + +D I ++ LK + H N ++HRD
Sbjct: 280 SYLVNDELWVVMEFMEGGALTDIVTNNR---MDEVQIATVCRACLKALAFLHANGVIHRD 450
Query: 135 LKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLGSKHYSTSIDIW 194
+K ++L+S + +KL DFG ++ V T ++ P+V + Y +DIW
Sbjct: 451 IKSDSILLSHDGKVKLXDFGFCAQVTQDLQKRKSLVGTPYWMAPEV-ISRLPYGPEVDIW 627
Query: 195 SIGCIFAEMVNLKPLFPGNSETDELKRI 222
S+G + EM++ +P F ++RI
Sbjct: 628 SLGIMVMEMIDAEPPFFNEPPLQAMRRI 711
>13592
Length = 980
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Frame = +2
Query: 16 KLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHD 75
K+G+G +G VY A T EL A+K+I ++ + E+ +L+ ++H N+VR +
Sbjct: 5 KIGQGRFGKVYTAVNNNTGELMAMKEIAIQPGETRALKNVAEELKILEGIKHKNLVRYYG 184
Query: 76 VIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDL 135
+ ++L++ E + + + GL + + QLL G+ HK+ I+HRD+
Sbjct: 185 IEVHREELLIFMELCSEGTLESLVELTG-GLPEALSRRFTAQLLSGVAELHKHGIVHRDI 361
Query: 136 KPQNL-LISKECILKLADFGLARASGIPVKNYT-------HEVVTLWYRPPDVL--LGSK 185
K N+ L+ LKL DFG S + ++ +T V T Y P+V S
Sbjct: 362 KTANIFLVDGSNSLKLGDFG----SAVKIQAHTTVPGELQGYVGTQAYMAPEVFTKTNSD 529
Query: 186 HYSTSIDIWSIGCIFAEMVNLK 207
+ DIWS+GC+ EM + K
Sbjct: 530 GHGRLADIWSVGCVVVEMASGK 595
>06405
Length = 1965
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 13/229 (5%)
Frame = +1
Query: 15 NKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLH 74
++LG G YG VY+A K ++ A+K ++ ED + + E +++KE++HPN+V+L
Sbjct: 277 HRLGGGQYGDVYEAMWKRYNKIVAVKTLK---EDTMALNDFLEEAAIMKEMKHPNLVQLL 447
Query: 75 DVIHSNKKLVLVFEFVDQ-DLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHR 133
V +V EF+ +L ++ + + P + + Q+ G+ +HR
Sbjct: 448 GVCTREPPFYIVTEFMPHGNLLDYLRSSTREENGPTALMYMATQIASGMAYLETKNFIHR 627
Query: 134 DLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVT----LWYRPPDVLLGSKHYST 189
DL +N L++ ++K+ADFGLAR + YT + W P L +ST
Sbjct: 628 DLAARNCLVADSNMVKVADFGLARL--MKDDTYTAHIGAKFPIKWTAPEG--LAFNRFST 795
Query: 190 SIDIWSIGCIFAEMV--NLKPLFPGNSETDE---LKRIFKL---TGTPC 230
DIW+ G + E+ + P +PG T+ L+R +++ GTP
Sbjct: 796 RSDIWAFGVLLWELATYGMSP-YPGVELTEVYHLLERGYRMERPPGTPA 939
>09606
Length = 1300
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 23/232 (9%)
Frame = -3
Query: 6 SKLERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKEL 65
+++E + +LG+G + ++YK R K T A+ I E + + ++
Sbjct: 1124 TRMENFVLYEELGKGEHSIIYKGRRKGTINFVAIHCIEKCKRPE-----VTNTVRMTHDI 960
Query: 66 QHPNVVRLHDVIHSNKKLVLVFEF-VDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEV 124
HPNVV+ H+ ++ L LV E L + +D L I+ L+ G+
Sbjct: 959 SHPNVVQFHEWYETSNHLWLVVELCTGGSLADILA--QDHHLPETSIRDFGIHLVTGLHY 786
Query: 125 CHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNY---THEVVTLW------- 174
H IL DL+P +L+ +LK ADFGL++ G ++ E W
Sbjct: 785 IHSLGILFHDLRPSKVLLDTSGVLKFADFGLSKVEGENLEELFFKFAEAGDQWNIQSAEE 606
Query: 175 ------------YRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNS 214
Y P+V G++ S D+W++GC+F EM + P F G +
Sbjct: 605 MMKQVPTSGSPTYMAPEVFQGAEP-SIMSDLWALGCVFYEMFSGHPPFLGET 453
>17975
Length = 449
Score = 82.0 bits (201), Expect = 9e-16, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Frame = +3
Query: 22 YGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHDVIHSNK 81
+ VV AR T E A+K I DE S +E+ +K +QHPNVVRL++VI +
Sbjct: 6 FAVVKLARHVFTGEKVAVKVIDKTKLDEVSRSHLFQEVRCMKLVQHPNVVRLYEVIDTQT 185
Query: 82 KLVLVFEFVD-QDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNL 140
KL L+ E D D+ ++ GL+ + K Q+++ I CHK ++HRDLKP+N+
Sbjct: 186 KLYLILELGDGGDMYDYIMR-HSGGLEEKLAKRYFRQIVEAISYCHKLHVVHRDLKPENV 362
Query: 141 L-ISKECILKLADFGLA 156
+ K ++KL DFG +
Sbjct: 363 VFFEKPGLVKLTDFGFS 413
>28638
Length = 1458
Score = 58.2 bits (139), Expect(3) = 4e-15, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = -1
Query: 130 ILHRDLKPQNLLIS--KECILKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLGSKHY 187
I+H DLKP+N+L+ K +K+ DFG + G + Y + + +YR P+VLLG Y
Sbjct: 768 IIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQY---IQSRFYRSPEVLLGVP-Y 601
Query: 188 STSIDIWSIGCIFAEMVNLKP 208
+ID+WS+GCI EM +P
Sbjct: 600 DLAIDMWSLGCILVEMHTGEP 538
Score = 36.6 bits (83), Expect(3) = 4e-15, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Frame = -3
Query: 8 LERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQH 67
L+RYE + +G+G++G V KA + +E A+K I+ + ++ + L+
Sbjct: 1150 LDRYEIDSLIGKGSFGQVVKAYDHGDQEQVAIKIIKNKKPFLNQAQIEVKLLELMNRHDA 971
Query: 68 PN---VVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEV 124
N +VRL L LVFE + +L + N +G P + + ++ G V
Sbjct: 970 DNXYYIVRLKRHFMFRNHLCLVFELLSYNLYDLLRNTNFRGGLPQLDS*ICSAVVYGAAV 791
Query: 125 CHKNKILHRDLKPQ 138
H L PQ
Sbjct: 790 LSHAGNEHYSL*PQ 749
Score = 24.3 bits (51), Expect(3) = 4e-15, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 208 PLFPGNSETDELKRIFKLTGTP 229
PLF G++E D++ +I ++ G P
Sbjct: 539 PLFAGSNEFDQMMKIVEVLGVP 474
>14420
Length = 528
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 82/155 (52%)
Frame = +2
Query: 56 IREISLLKELQHPNVVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLL 115
I EI +++E Q+PN+V D ++L +V EF+ + + +D I ++
Sbjct: 44 INEILVMRENQNPNIVNYLDSYLVGEELWVVMEFLAGG--SLTDVVTETCMDEGQIAAVC 217
Query: 116 YQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWY 175
+ L+ +E H+N+++HRD+K N+L+ + +KL DFG + V T ++
Sbjct: 218 RECLQALEFLHENQVIHRDIKSDNILLGMDGSVKLTDFGFCAQLSPEQSKRSTMVGTPYW 397
Query: 176 RPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLF 210
P+V+ K Y ++DIWS+G + EM+ +P +
Sbjct: 398 MAPEVVT-RKQYGPTVDIWSLGVMCIEMIEGEPPY 499
>03294
Length = 1684
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%)
Frame = -1
Query: 191 IDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTPCVEKWPGLADLPNWKADAFEK 250
+D+WSIG IFA+M+ P+F G+SE D+L +IF++ GTP + WP LP + F
Sbjct: 1672 VDVWSIGTIFADMLIRTPIFKGDSEIDQLFKIFRIIGTPTEQTWPEFHKLPAFNG-MFPL 1496
Query: 251 YPGEPLQNICPXXXXXXXXXXXXXXRCNPQERITAKAGLEHPYFNDIPDTLKKMNM 306
+ L +C+P +RI+ K L+H YF ++ ++K +++
Sbjct: 1495 WKEGKLSETLTDLDSLGLDLIERTLKCDPAQRISCKKMLQHAYFLNVDTSVKPVDV 1328
>03240
Length = 1683
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 50/262 (19%)
Frame = -3
Query: 3 MKNSKLER--YEKLNKLGEGTYGVVYKAREKTTKELYALKKIR---LESEDEGIPSTAIR 57
+K +K+++ +EK+ LG G +G V R+ T LYA+K +R + ++ A R
Sbjct: 1315 LKRAKMDKCMFEKIKTLGVGAFGEVSLCRKNDTGMLYAMKTLRKSDVLKRNQVAHVKAER 1136
Query: 58 EISLLKELQHPNVVRLHDVIHSNKKLVLVFEFV-DQDLKKFMNNFKDKGLDPHIIKSLLY 116
+I L E + VV+L+ + L V ++V DL + + + LD + + +
Sbjct: 1135 DI--LAEADNEWVVKLYYSFQDHNYLYFVMDYVPGGDLMGLL--IRMEILDEPLARFYVA 968
Query: 117 QLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGL-------------------AR 157
+L++ IE H+ +HRD+KP N+LI + +KL DFGL AR
Sbjct: 967 ELVQAIESVHRMGFIHRDIKPDNILIDRNGHIKLTDFGLCTGFRWTHNSKYYQRDGTHAR 788
Query: 158 ASGIPVKNYTHE-------------------------VVTLWYRPPDVLLGSKHYSTSID 192
+ VK E V T Y P+VL Y++ D
Sbjct: 787 QDSMEVKCQLDEQCQCEILKPLERRRKREQRCLAHSLVGTPNYIAPEVLSRLGGYTSVCD 608
Query: 193 IWSIGCIFAEMVNLKPLFPGNS 214
WS+G I EM+ P F N+
Sbjct: 607 WWSVGVILFEMLVGHPPFYANT 542
>01718
Length = 959
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 6/202 (2%)
Frame = +3
Query: 16 KLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHD 75
K+G G + V+K + T ++ ALK + S + +RE+ LL LQH N++R
Sbjct: 168 KIGAGFFSEVFKVTHRITGQVMALKMNTMTSNRHNM----LREVQLLNRLQHANILRFMG 335
Query: 76 VIHSNKKLVLVFEFV-DQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRD 134
V +L + E++ +L++ + KD+ L L L +G++ H + +HRD
Sbjct: 336 VCVHEGQLHALTEYIPSGNLEQLLEK-KDEELPWTQRIQLTLGLARGLDYLHSTRFIHRD 512
Query: 135 LKPQNLLISKE----CILKLADFGLARASGIPV-KNYTHEVVTLWYRPPDVLLGSKHYST 189
L +N+LI +E +ADFGLA P+ K V + ++ P+VL G Y+
Sbjct: 513 LTSKNILIRREDNHGYHAVIADFGLATKIPDPLDKEKLPTVGSPYWMAPEVLNG-HFYNE 689
Query: 190 SIDIWSIGCIFAEMVNLKPLFP 211
D++S+G I E+ P P
Sbjct: 690 RADLFSVGIIMCEITARIPADP 755
>19761
Length = 473
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Frame = -3
Query: 105 GLDPHIIKSLLYQLLKGIEVCHKNK--ILHRDLKPQNLLISKECILKLADFGLARASGIP 162
GL +I L Q + H + ILHRDLKPQN+ ++++ ++L D GLAR P
Sbjct: 435 GLPERLIVCWLMQTASALNYMHTHTPVILHRDLKPQNIYVTEKGDVRLGDLGLARKLTGP 256
Query: 163 VKNYTHEVVTLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRI 222
T +V T+ Y P++ L + Y++ DIWS+GC+F ++ G +DE+ +
Sbjct: 255 ADFATSQVGTIMYLSPEI-LSQQPYNSKSDIWSLGCVFYDIT-------GKKGSDEMGVM 100
Query: 223 FKLTGTPCVEKWPGLADLPNWKADAF 248
F L K P LP+ + F
Sbjct: 99 FLLVQVMGGRKLP----LPDHYSQEF 34
>12453
Length = 680
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Frame = +3
Query: 196 IGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTPCVEKWPGLADLPNWKADAFEKYPGEP 255
+GCIF EM +PLFPG++ DEL IFK GTP + P ++ P++ A Y GE
Sbjct: 6 VGCIFYEMACGRPLFPGSTVEDELHLIFKTLGTPTEDSLPSISRNPDFLALNLPHYQGEA 185
Query: 256 LQNICPXXXXXXXXXXXXXXRCNPQERITAKAGLEHPYFND-------IPDTLKKMNMRM 308
L I P + N + R++A L+H +FN +PDT+ +
Sbjct: 186 LITIAPRLDSDGLDLLAKFLKYNAKIRVSAADSLKHSFFNSLGPGVHMLPDTVSAFTVPG 365
Query: 309 LS 310
+S
Sbjct: 366 IS 371
>21433
Length = 590
Score = 63.2 bits (152), Expect(2) = 1e-12, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Frame = +2
Query: 115 LYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLW 174
+YQL +E CH K++HRD+KP+NLL+ + LK+ADFG + + P T TL
Sbjct: 185 IYQLSSALEYCHYRKVIHRDIKPENLLLGLKGDLKIADFGWSVHA--PSSRRTTMCGTLD 358
Query: 175 YRPPDVLLGSKHYSTSIDIWSIGCIFAE-MVNLKPLFPGNSETDELKRIFKLTGTPCVEK 233
Y PP+++ G H ++D+WS+G + E +V PL P + +G+P +
Sbjct: 359 YLPPEMVEGKTH-DENVDLWSLGVLCYEFLVGTPPLRPSPTRPPTPASPRWTSGSPSIVT 535
Query: 234 WPGLADL 240
PG DL
Sbjct: 536 -PGARDL 553
Score = 28.9 bits (63), Expect(2) = 1e-12, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 57 REISLLKELQHPNVVRLHDVIHSNKKLVLVFEFV 90
REI + L+H N++R+ H ++ L+ EF
Sbjct: 15 REIEIQSHLRHDNILRMFGYFHDKTRVYLILEFA 116
>04852
Length = 1462
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 35/191 (18%)
Frame = +1
Query: 54 TAIREISLLKELQ----------HPNVVRLHDVIHSNKKLVLVFEFV-DQDLKKFMNNFK 102
TA+ E ++ELQ H N+V L ++ EF + +L+ F+ + +
Sbjct: 58 TAVEEQDFVQELQVMKAVKKMGSHINIVNFLGCCTQGGPLWVIVEFAKNGNLRDFLESCR 237
Query: 103 DKGL----------DP---------HIIK-----SLLYQLLKGIEVCHKNKILHRDLKPQ 138
D G+ DP H+I+ S +Q+ +G+E K +HRDL +
Sbjct: 238 D-GINGYGKFVSPQDPGWYTKTPGGHVIRRKNLLSYAFQIARGMEFLASRKCIHRDLAAR 414
Query: 139 NLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLGSKHYSTSIDIWSIGC 198
N+L+++E +LK+ADFGL+R K + W P + Y+T D+WS G
Sbjct: 415 NVLVTEEHVLKIADFGLSRTGDYYKKRSGGRLPVKWMAPEALF--DMRYTTKSDVWSFGV 588
Query: 199 IFAEMVNLKPL 209
+ E+ +L +
Sbjct: 589 VLWEIFSLGGM 621
>27546
Length = 426
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Frame = -1
Query: 57 REISLLKELQHPNVVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKG-LDPHIIKSLL 115
RE+ +L L HPN++++H ++ K+ + + ++ +++ K G +D K
Sbjct: 333 RELEILTRLDHPNIIQIHSILQRGPKIFIFMRYAEKG--DMLSHIKKTGPIDEAQTKVWF 160
Query: 116 YQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLAR----ASGIPVK 164
+Q+ K ++ H + I HRDLK +N+L+SK +K+ADFG AR A+G+ +K
Sbjct: 159 FQMAKALQYLHSHDIAHRDLKCENILLSKRLNVKIADFGFARYCRDAAGMDLK 1
>15910
Length = 1361
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 6/209 (2%)
Frame = +2
Query: 117 QLLKGIEVCHKNKILHRDLKPQNLLISKECI-----LKLADFGLARASGIPVKNYTHEVV 171
+L G++ H N ++HRDLKP+NLL EC+ LKLADFGL+R P +
Sbjct: 488 DILHGVQYIHANGVVHRDLKPENLLY--ECMTDDSKLKLADFGLSRIIE-PEVQMSTVCG 658
Query: 172 TLWYRPPDVLLGSKHYSTSIDIWSIGCI-FAEMVNLKPLFPGNSETDELKRIFKLTGTPC 230
T Y P+VL G K Y+ S+D+WS+G I + + +P F N E + ++I K
Sbjct: 659 TPGYCAPEVLKGDK-YTPSVDMWSVGVIAYILLCGYEPFFAEN-EFEMYRKIIK------ 814
Query: 231 VEKWPGLADLPNWKADAFEKYPGEPLQNICPXXXXXXXXXXXXXXRCNPQERITAKAGLE 290
+K D E+Y E +N +P++R+TA L
Sbjct: 815 ----------GEYKFD--EEYWSEISEN--------AKDVVRKLLVIDPKKRLTATEALR 934
Query: 291 HPYFNDIPDTLKKMNMRMLSYQLVIFNKR 319
P+ + K NM + +L FN R
Sbjct: 935 LPWVKGV--ATKTTNMEITMNKLKEFNAR 1015
>13066
Length = 551
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Frame = +3
Query: 57 REISLLKELQHPNVVRLHDVIHSNKKLVLVFEFVDQ-DLKKFMNNF---KDKGLDPHIIK 112
RE+ LL +L HP ++++H ++ K + F ++ DL ++ K+K K
Sbjct: 123 RELDLLTKLDHPYIIQIHSILQRXPKNFIFMRFAERGDLLTYIQEVGFVKEKQ-----AK 287
Query: 113 SLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARA----SGIPVKNYTH 168
YQ+ + H + HRDLK +N+L+S +KLADFG A A SG + T+
Sbjct: 288 IWFYQMTTALNYLHSYDVAHRDLKCENILLSSHFNVKLADFGFACACITESGEKYMSRTY 467
Query: 169 EVVTLWYRPPDVLLGSKHYSTSIDIWSIG 197
+ Y P+++ G+ + D WS+G
Sbjct: 468 -CGSAAYAAPEIVYGAPYAPKVADAWSLG 551
>00392
Length = 668
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 10/177 (5%)
Frame = +3
Query: 58 EISLLKELQHPNVVRLHDVI----HSNKK-LVLVFEFVDQD-LKKFMNNFKDKGLDPHII 111
E +LKELQHPN+VR D H N+K ++LV E + LK ++ FK + I+
Sbjct: 81 EAEMLKELQHPNIVRFFDYWEEHNHRNRKVIILVTELMTSGTLKTYLKRFKKPNVK--IL 254
Query: 112 KSLLYQLLKGIEVCHKNK--ILHRDLKPQNLLISKEC-ILKLADFGLARASGIPVKNYTH 168
K+ Q+LKG+ H ++HRDLK N+ I+ +K+ D GLA +++
Sbjct: 255 KNWCRQVLKGLYFLHTRTPPVIHRDLKCDNIFITGPTGSVKIGDLGLATLKN---QSFAK 425
Query: 169 EVV-TLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFK 224
V+ T + P++ +HY ++D+++ G EM + + +P SE +I+K
Sbjct: 426 SVIGTPEFMAPEMY--EEHYDEAVDVYAFGMCMLEMASSE--YP-YSECSNAAQIYK 581
>14477
Length = 493
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Frame = -1
Query: 16 KLGEGTYGVVYKA--REKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRL 73
KLG G +G V K R + A+K ++ D + S I+E ++K++ H ++VRL
Sbjct: 469 KLGAGNFGSVMKGVCRLDDREIPVAIKVLKNADLDPSVQSELIKEAEVMKKMDHMHIVRL 290
Query: 74 HDVIHSNKKLVLVFEFVDQD-LKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILH 132
+ + ++LV E L KF+ K+K L I L++Q+ +G+E NK +H
Sbjct: 289 IGLCEG-ETMMLVLELAKLGPLNKFLP--KNKHLPLWNILELMWQVSQGMEYLEANKFVH 119
Query: 133 RDLKPQNLLISKECILKLADFGLARA 158
RDL +N+L+ E K++DFG+++
Sbjct: 118 RDLAARNILLCDEHFAKISDFGMSKT 41
>19301
Length = 712
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 1/150 (0%)
Frame = +2
Query: 8 LERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQH 67
E L LG G G V+ K E A+KK+R I T IR L++L H
Sbjct: 302 FESITDLEWLGSGAQGAVFLG--KLCAEEVAVKKVR------DIKETDIRN---LRKLNH 448
Query: 68 PNVVRLHDVIHSNKKLVLVFEFVD-QDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCH 126
PN++ V ++ E+ L + + + K+ + P ++ Q+ G+ H
Sbjct: 449 PNIISFKGVCTQAPCYCIIMEYCPYGQLYEVLRDGKE--IPPALVLDWSKQIASGMNYLH 622
Query: 127 KNKILHRDLKPQNLLISKECILKLADFGLA 156
+KI+HRDLK N+L++K ++K++DFG +
Sbjct: 623 SHKIIHRDLKSPNVLVAKNDVVKISDFGTS 712
>18287
Length = 678
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Frame = -3
Query: 186 HYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGTPCVEKWPGLADLPNWKA 245
HY SIDIWS+GCIFAE+++ + LF +L I L GTP E D+
Sbjct: 676 HYDYSIDIWSVGCIFAELLSRRILFQAQGPVQQLDMIINLVGTPRPE------DMERACE 515
Query: 246 DAFEKYPGEP--------LQNICPXXXXXXXXXXXXXXRCNPQERITAKAGLEHPYFND 296
A +P L N+ P NP+ RI+A+ L HPY ++
Sbjct: 514 GARNHILNQPFRRQNLLTLYNLSPHATHEAVRLLTRMLILNPKNRISAEEALSHPYLDE 338
>21808
Length = 1011
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 9/222 (4%)
Frame = +1
Query: 38 ALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHDVIHSNKKLVLVFEFV-DQDLKK 96
A+K ++ + D P + E ++K+L+HP +++L+ V + + ++ E + + L +
Sbjct: 31 AIKTLKSGTMD---PKDFLAEAQIMKKLRHPKLIQLYAVCTQDDPIFIITELMKNGSLLE 201
Query: 97 FMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLA 156
F+ K + L + + Q+ G+ +HRDL +N+L+S +K+ADFGLA
Sbjct: 202 FLQG-KGRVLKLPALIDIGAQIACGMAYLESQNYIHRDLAARNILVSDNNTVKIADFGLA 378
Query: 157 RASGIPVKNYTHEVVTL----WYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPL-FP 211
R I Y V W P ++ D+WS G + E V + +P
Sbjct: 379 RV--IKEDEYEARVGARFPIKWTAPEAA--NYNRFTIKSDVWSFGILLTETVTYGRVPYP 546
Query: 212 GNSETDELKRIFKLTGTPCVEKWP-GLAD--LPNWKADAFEK 250
G + + L ++ PC P L D L W+ + E+
Sbjct: 547 GMTNAEVLHQVEHGYRMPCPPGCPKPLYDIMLECWRKEEMER 672
>07940
Length = 1336
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Frame = -3
Query: 104 KGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLAR------ 157
K L P + S YQ+ +G+E + +HRDL +N+L+++E +LK+ADFGL R
Sbjct: 362 KMLTPKDLISYAYQVARGMEYLASKQCIHRDLAARNVLVAEEYVLKIADFGLTRNLQQFD 183
Query: 158 ------ASGIPVKNYTHEVVTLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNL 206
+PVK + P+ L K+ S S D+WS G + E+ L
Sbjct: 182 YYRKTTDGRLPVK----------WMAPEALFDRKYTSKS-DVWSYGVLLWEIFTL 51
>01106
Length = 878
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Frame = +3
Query: 3 MKNSKL--ERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREIS 60
+KN L RY + KLG G + V+ + T K ALK ++ + TA+ E+
Sbjct: 294 VKNGDLFNGRYHVIRKLGWGHFSTVWLCWDLTCKRFVALKVVK---SAQHYTETALDEVK 464
Query: 61 LLKELQHPNV--------VRLHDVIH----SNKKLVLVFEFVDQDLKKFMNNFKDKGLDP 108
LLK ++ +V V+L D + + +VFE + +L K + +G+
Sbjct: 465 LLKCVRESDVADPARAKCVQLLDDFKISGVNGTHVAMVFEVLGYNLLKLIIRSNYQGIPI 644
Query: 109 HIIKSLLYQLLKGIEVCH-KNKILHRDLKPQNLLIS 143
H +K ++ Q+L+G+ H K +I+H D+KP+N+LI
Sbjct: 645 HNVKLIIRQVLEGLSYMHAKCRIIHTDIKPENILIC 752
>32359
Length = 928
Score = 48.5 bits (114), Expect(2) = 4e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Frame = -1
Query: 11 YEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNV 70
Y +G G++GVVY+A+ T EL A+KK+ +D+ + RE+ ++++L+H N+
Sbjct: 424 YTDAKVIGNGSFGVVYQAKLVDTSELVAIKKVL---QDKRFKN---RELQIMRKLEHQNI 263
Query: 71 VRLHDVIHSNKK------LVLVFEFVDQDLKKFMNNF-KDKGLDPHI-IKSLLYQLLKGI 122
V+L +S+ + L LV E+V + + + ++ K K P + IK +YQL + +
Sbjct: 262 VKLKFFFYSSGEKKDEVFLNLVLEYVPETVYRVARHYSKSKQTIPILYIKLYMYQLFRSL 83
Query: 123 EVCHKNKIL 131
H +
Sbjct: 82 AYIHSQACV 56
Score = 27.7 bits (60), Expect(2) = 4e-08, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 130 ILHRDLKPQNLLISKE 145
+ HRD+KPQNLL+ E
Sbjct: 62 VCHRDIKPQNLLLDPE 15
>31489
Length = 329
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Frame = +3
Query: 59 ISLLKELQHPNVVRLHDVI------HSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIK 112
I +LK +H N++ + +++ H K + +VF+ ++ DL + + + D+ L I+
Sbjct: 3 IKILKHFKHDNIISIREILKPKDSYHDFKDIHVVFDLMESDLHRII--YSDQPLTEEHIR 176
Query: 113 SLLYQLLKGIEVCHKNKILHRDLKPQNLL 141
LYQ+L+G++ H ++HRDLKP NLL
Sbjct: 177 YFLYQILRGLKYIHSANVVHRDLKPSNLL 263
>19094
Length = 898
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +1
Query: 101 FKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASG 160
++K L I ++LY LKG+ H + +HRD+K N+L++ E KLADFG+A
Sbjct: 34 LRNKTLVEREIATILYYTLKGL*YLHSRRKIHRDIKAGNILLNNEGHAKLADFGVAGQLT 213
Query: 161 IPVKNYTHEVVTLWYRPPDVL--LGSKHYSTSIDIWSIGCIFAEMV 204
+ + T ++ P+V+ +G Y DIWS+G EM
Sbjct: 214 DTMAKRNTVIGTPYWMAPEVIQEIG---YDCVADIWSLGITALEMA 342
>00715
Length = 1788
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 46/212 (21%)
Frame = +1
Query: 65 LQHPNVVRLHDVIHSNK---KLVLVFEFVDQ-DLKKFMNNFKDKGLDPHIIKSLLYQLLK 120
L+H NVV + ++ L E+V +L+ +N+ + + +D + SL Q+ +
Sbjct: 97 LRHVNVVSILGATSLHRFEDGAWLAMEYVGPLNLQTILNDHQ-QDIDSSMRLSLALQMAR 273
Query: 121 GIEVCHKNKILHRDLKPQNLLISKECILKLADFGLA------------RASGI------- 161
G+ H I+H DLKP N L++++ L++ADFG R G+
Sbjct: 274 GLHYLHSINIVHLDLKPANCLLTRDLKLRIADFGCCHQLTPTGLDMGEREGGMAGNELEL 453
Query: 162 -PVKN-YTHEVV-TLWYRPPDVLLG------SKHYSTSIDIWSIG------------CIF 200
PV+ + +E+ TL YR P++L G S YS I +W + +
Sbjct: 454 TPVQGAWKNELAGTLAYRAPELLKGLQPSVRSDVYSLGITLWQMCTRQGPYEGVPAHAVV 633
Query: 201 AEMV--NLKPLFPGNSETDELKRIFKLTGTPC 230
++V +L+P P ++E D + +F+ T C
Sbjct: 634 YQVVSKDLRPCPPPSTEDDPFEVMFRDLYTQC 729
>17253
Length = 483
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Frame = -1
Query: 41 KIRLESEDEGIPSTAIREISLLKEL-QHPNVVRLHDVIHSNKKLVLVFEFV-DQDLKKFM 98
K E+ + S +RE+S++++L +HPNVV + +++ EF DL F+
Sbjct: 450 KTHNEAATDAEKSEFLRELSIMRKLPRHPNVVSFMGCCTMSDPALILMEFCCHGDLLSFL 271
Query: 99 NNFKD----------KGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECIL 148
+ L S + +G+ NKI+HRD+ +N+LIS+ +
Sbjct: 270 RKRRPDRTVFLTSTANDLTARDFFSFALHVARGMAHVANNKIVHRDVAARNVLISERNVC 91
Query: 149 KLADFGLARASGIPVKNYTHEVVT 172
K++DFGL+R G +N +E+V+
Sbjct: 90 KVSDFGLSRRVG--DQNDVYEIVS 25
>18484
Length = 635
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +1
Query: 121 GIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVV-TLWYRPPD 179
G+ H I++RDLK N+++ E +K+ADFG+ + G+ T T Y P+
Sbjct: 79 GLFFLHDQGIIYRDLKLDNVMLDSEGHIKIADFGMCK-EGMTGDATTRTFCGTPDYIAPE 255
Query: 180 VLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDEL 219
++L + YS S+D W+ G + EM+ +P F G E DEL
Sbjct: 256 IVL-YQPYSKSVDWWAYGVLLFEMLAGQPPFDGEDE-DEL 369
>26711
Length = 405
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Frame = -2
Query: 117 QLLKGIEVCHKNKILHRDLKPQNLLISKECI--LKLADFGLARASGIPVKNYTHEVVTLW 174
Q+L ++ H ++H DLKP NLL+S + + ++L DFGLAR P + + + T
Sbjct: 392 QVLDILQHVHAQGVVHMDLKPSNLLLSGDKLDSVQLIDFGLARKLYPPQETFLNH-GTPG 216
Query: 175 YRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKR 221
+ P+ L K ST+ D+W +G + +++ + F +S T+ LK+
Sbjct: 215 FTSPEA-LDVKPISTASDVWGVGVLAYILLSGQSPFQADSATESLKK 78
>26560
Length = 398
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = -1
Query: 117 QLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYR 176
+++ G+E H +++RDLKP N+L+ + ++++D GL A K V T Y
Sbjct: 332 EVMLGLEHMHSRFVVYRDLKPANILLDENGHVRISDLGL--ACDFSKKRPHASVGTHGYM 159
Query: 177 PPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGT 228
P+VL+ + Y +S D +S GC+ ++ LK P RI ++T T
Sbjct: 158 APEVLMKGQSYDSSADWFSFGCMLYKL--LKGHSPFRQHNQGQARIDRMTMT 9
>21079
Length = 878
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Frame = +1
Query: 67 HPNVVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDK-GLDPHIIKSLLYQLLKGIEVC 125
HP ++ L D + + +VLV EFV + F +D L + Q+ G+
Sbjct: 1 HPKLLMLWDAFEAPRTMVLVMEFVGAG-ELFERVIRDDFVLTERDCVHFVRQICSGVGYM 177
Query: 126 HKNKILHRDLKPQNLLISKECI------LKLADFGLARASGIPVKNYTHEVVTLWYRPPD 179
H ILH DLKP+N+L C+ +K+ DFGLAR +Y+P D
Sbjct: 178 HTQSILHLDLKPENVL----CVSDNSNQIKIIDFGLAR----------------FYKPGD 297
Query: 180 ---VLLGSKHYST-----------SIDIWSIGCI 199
VL G+ + + D+WSIG I
Sbjct: 298 SLQVLFGTPEFIAPEVVNYDEINFTTDMWSIGVI 399
>13212
Length = 1067
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Frame = -1
Query: 114 LLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGL-ARASGIPVKNYTHEVVT 172
+ +++ ++ H++ ++HRD+K N+L++ + +KLADFG+ A+ + K T
Sbjct: 965 VCHEMCMALDFLHRHHVIHRDIKAGNVLLTIDGEVKLADFGVSAKNTQTQQKRDTFIGTP 786
Query: 173 LWYRPPDVL---LGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKL--TG 227
W P VL L Y DIWS+G E ++ P N E ++ + K+ +
Sbjct: 785 YWMAPEVVLCETLKDTPYDFKADIWSLGVTLIEFAQIE---PPNKEMHPMRVLIKIHKSD 615
Query: 228 TPCVEK 233
P +EK
Sbjct: 614 PPTLEK 597
>30755
Length = 1137
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = +2
Query: 117 QLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYR 176
+++ + H I++RDLK +NLL+ K+ +K+ADFGL + + T Y
Sbjct: 56 EIISALGYLHSQGIIYRDLKLENLLLDKDGHIKVADFGLCKEDITYGRTTKTFCGTPEYL 235
Query: 177 PPDVLLGSKHYSTSIDIWSIGCIFAEMV 204
P+V L Y ++D W G + EM+
Sbjct: 236 APEV-LDDNDYGRAVDWWGTGVVMYEMI 316
>16003
Length = 926
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = -1
Query: 208 PLFPGNSETDELKRIFKLTGTPCVEKWPGLADLPNWKADAFEKYPGEPLQNICPXXXXXX 267
P PG+++ D+L +IF + GTP +WP + LP++ F+ +PL+ I
Sbjct: 911 PFLPGDTDLDQLGKIFNMLGTPTETEWPAVTSLPDYI--QFKHCQKQPLKEIFTAAGDDL 738
Query: 268 XXXXXXXXRCNPQERITAKAGLEHPYFNDIP 298
NP R TA L+ PYF++ P
Sbjct: 737 LELLDKLLAMNPLHRCTATQALKMPYFSNKP 645
>20640
Length = 1492
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +1
Query: 131 LHRDLKPQNLLISKECILKLADFGLARA--SGIPVKNYTHEVVTLWYRPPDVLLGSKHYS 188
+HRDL +N L+ + ++K++DFGLAR+ S + H+ + + + P + +L +K +S
Sbjct: 10 VHRDLATRNCLVGHDLVVKISDFGLARSVHSVDYYRGSEHDAIPIRWMPLEAILYNK-FS 186
Query: 189 TSIDIWSIGCIFAEM--VNLKPLF 210
T D+WS G + E+ L+P +
Sbjct: 187 TQSDVWSFGVVLWEIFAFALQPYY 258
>27405
Length = 532
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 11/182 (6%)
Frame = -3
Query: 22 YGVVYKAREKTTKELYALK---KIRLESEDEGIPSTAIREISLLKELQ----HPNVVRLH 74
+G VY R+ T ++YA+K K R++ + G + A+ E +L + P +V +
Sbjct: 527 FGEVYGCRKADTGKMYAMKCLDKKRIKMK--GGETLALNERIMLSLVSTGEGSPFIVCMT 354
Query: 75 DVIHSNKKLVLVFEFVDQ-DLKKFMNN---FKDKGLDPHIIKSLLYQLLKGIEVCHKNKI 130
+ +KL + + ++ DL ++ F +K ++ +++ G+E H +
Sbjct: 353 YAFQTPEKLCFILDLMNGGDLHYHLSQHGVFTEKE-----VRFYAAEVMLGLEHMHSRFV 189
Query: 131 LHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYRPPDVLLGSKHYSTS 190
++RDLKP N+L+ + ++++D GL A K V T Y P+VL+ + Y +S
Sbjct: 188 VYRDLKPANILLDENGHVRISDLGL--ACDFSKKKPHASVGTHGYMAPEVLMKGQAYDSS 15
Query: 191 ID 192
D
Sbjct: 14 AD 9
>11780
Length = 1713
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Frame = +3
Query: 17 LGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHDV 76
+G+G +G VYK + + A+K+ L+ +D G + ++E S++ L+H N+VRL V
Sbjct: 621 IGKGDFGDVYKGMYR--GQPVAIKQ--LKDKDRG-EQSFLQEASVMTSLRHDNLVRLIGV 785
Query: 77 IHSNKKLVLVFEFVDQ-DLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDL 135
+ + + LV EF+ + +L +++ + + + +E +++HRDL
Sbjct: 786 V-LGETIFLVTEFMGKGNLVEYLRSRGRSVITKKDQINFATDTCAAMEYLESKRLVHRDL 962
Query: 136 KPQNLLISKECILKLADFGLAR 157
+N+L+ + K++DFGLA+
Sbjct: 963 AARNVLVHDDGKAKVSDFGLAK 1028
>14116
Length = 1017
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 20/210 (9%)
Frame = -1
Query: 16 KLGEGTYGVVYKA----REKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVV 71
++G+G +G V + E+ L A+K + + E + ++E ++K+ H NV+
Sbjct: 615 EIGKGNFGCVKRGFLTLPEQKGDILVAVKTLHNNNPREIELQSFLQEALIMKDFHHSNVL 436
Query: 72 RLHDV-IHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLY--QLLKGIEVCHKN 128
L + ++ + ++V F+ + +D P I ++Y + +G++
Sbjct: 435 TLIGICLNLDDMPLVVLPFMKH--GDLLTYIRDDQHQPTIKDLIMYGVDIARGMDYLAGL 262
Query: 129 KILHRDLKPQNLLISKECILKLADFGLAR-------------ASGIPVKNYTHEVVTLWY 175
K +HRDL +N ++ ++ +K+ADFGLAR + +PVK E
Sbjct: 261 KFVHRDLAARNCMLDEDFHVKVADFGLARDIYEKEYYSSENKKAKLPVKWMALES----- 97
Query: 176 RPPDVLLGSKHYSTSIDIWSIGCIFAEMVN 205
L +Y + D+WS G + E++
Sbjct: 96 ------LEKGNYDSKTDVWSYGVVLWELLT 25
>22005
Length = 873
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 55/245 (22%)
Frame = +1
Query: 17 LGEGTYGVVYKAREKTTKELYA----------LKKIRLESEDEGIPSTAIREISLLKELQ 66
+G+G +G V K + L L K+ E E + S RE SL+ +
Sbjct: 7 IGQGAFGRVSKLKFLGLASLVGELIPEKRP*LL*KMLKEDASEDLQSDFEREASLMADFD 186
Query: 67 HPNVVRLHDVIHSNKKLVLVFEFVDQ-DLKKFM-----NNFK-------------DKGLD 107
HPN+V+L V K + L+FEF+ + DL F+ N+ + GL
Sbjct: 187 HPNIVKLLGVCAIGKPMCLLFEFMSKGDLNDFLRLCSPENYNLPVSRSQNLVVDLEDGLR 366
Query: 108 PHI---------------------IKSLLY---QLLKGIEVCHKNKILHRDLKPQNLLIS 143
+ K LY Q+ G+ + +HRDL + +
Sbjct: 367 VEVEAEECEKDTQSEDRDCSGMLXTKDQLYISQQISAGMAYLAQKDYVHRDLATRTVXSR 546
Query: 144 KECILKLADFGLARA--SGIPVKNYTHEVVTLWYRPPDVLLGSKHYSTSIDIWSIGCIFA 201
++DFGLAR+ S + + + + + P + +L SK +ST D+WS G +
Sbjct: 547 TT-*S*ISDFGLARSVHSVDYYRGSEQDAIPIRWMPLEAILYSK-FSTQSDVWSFGVVLW 720
Query: 202 EMVNL 206
E++ L
Sbjct: 721 EILPL 735
>31885
Length = 529
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Frame = -2
Query: 59 ISLLKELQHPNVVRLHDVIHSNKKLVLVFE-FVDQDLKKFMNNFKDKGLDPHIIKSLLYQ 117
+ +L L HP +V L + L +V + F+ DL+ M ++ +K L Q
Sbjct: 519 VDMLTRLDHPFLVNLWYAFQDEEDLFMVVDLFLGGDLRYHMQ--QEVSFREDCVKFYLCQ 346
Query: 118 LLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVVTLWYRP 177
L ++ KI+HRD+KP N+L+ ++ + DF +A +++ T RP
Sbjct: 345 LALVLDYLRSQKIVHRDIKPDNILLDEQGHCHVTDFNIATQ----LEDDELATSTSGTRP 178
Query: 178 ---PDV----LLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSET 216
P+V + + Y +D WS+G E++ + F +S T
Sbjct: 177 YMAPEVYGVAINERRGYGFPVDWWSLGVSLFELLKKRRPFSVHSNT 40
>11185
Length = 473
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Frame = +1
Query: 111 IKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTH-- 168
I+ L+ G+ H IL DL+P +L+ +LK ADFGL++ G ++
Sbjct: 7 IRDFGIHLVTGLHYIHSLGILFHDLRPSKVLLDTSGVLKFADFGLSKVEGENLEELFFKF 186
Query: 169 -EVVTLW-------------------YRPPDVLLGSKHYSTSIDIWSIGCIFAEM 203
E W Y P+V G++ S D+W++GC+F EM
Sbjct: 187 AEAGDQWNIQSAEEMMKQVPTSGSPTYMAPEVFQGAEP-SIMSDLWALGCVFYEM 348
>16708
Length = 1397
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 14/193 (7%)
Frame = -1
Query: 14 LNKLGEGTYGVVYKAREKTTKELYALKKIRL--ESEDEGIPSTAIREISLLKELQHPNVV 71
L LG+G +G VY+AR +T E ALK L S DE I L ++ V
Sbjct: 1388 LQVLGKGVFGKVYEARLLSTHEKAALKTSILCHHSLDEVEALGRIEGGFYLAQMFGAWVT 1209
Query: 72 RLHDVIHSNKKLVLVFEFVDQD-LKKFMNNFKDKGL-----DPHIIKSLLYQLLKGIEVC 125
L K+ ++ F + L ++K+K + +P ++ + Q + +E
Sbjct: 1208 CL-----PFPKMNILLHFYEMGPLCNVYAHYKNKEMPIRWSNPAMVCCIAGQXVCALEHI 1044
Query: 126 HKNKILHRDLKPQNLLISKECILKLADFGLARASGI-PVKNYTHEVV-----TLWYRPPD 179
H+ ++H D+K N+L+ KL D+G+A+ + P TH T + RPP
Sbjct: 1043 HELGVVHMDVKADNVLVDAHGNCKLTDYGIAQLYKVYPAPTETHSSGCTNKRTFYTRPPA 864
Query: 180 VLLGSKHYSTSID 192
+ S+ +S D
Sbjct: 863 TMTPSERFSEEGD 825
>12786
Length = 460
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Frame = -3
Query: 102 KDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGI 161
+++GLD +IK ++L+ ++ H ++H DLKP N ++ LKL DFG+A
Sbjct: 431 QEQGLDRMMIKFYWREMLRAVKALHNEGVIHSDLKPANFMLVAGN-LKLIDFGIANTLQQ 255
Query: 162 PVKNYTHE--VVTLWYRPPDVLLGSKHYSTS-------------------IDIWSIGCIF 200
+ + V T Y P+ ++ + S D+WS+GCI
Sbjct: 254 DKTSVLKDSRVGTPSYMSPEAIMAACDDSADDSMEEDGHRTKPKYKVGVRSDVWSLGCIL 75
Query: 201 AEMV 204
MV
Sbjct: 74 YNMV 63
>28157
Length = 400
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Frame = +3
Query: 43 RLESEDEGIPSTAIREISLLKELQHPNVVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFK 102
R+ESE E + ++E+ L + HPN+V L+ + + LV E+ + N
Sbjct: 21 RIESEQE--KKSFMQELKQLSRVSHPNIVCLYGACR-DHPVCLVMEYAEGG--SLYNVLH 185
Query: 103 DKGLDP-----HIIKSLLYQLLKGIEVCHKNK---ILHRDLKPQN-LLISKECILKLADF 153
G P H + LL Q G+E H K ++HRDLKP N LLI LK+ DF
Sbjct: 186 GSGPQPQYTAAHAMNWLL-QCALGVEYLHGMKPKALIHRDLKPPNLLLIQCGTKLKICDF 362
Query: 154 GLA 156
G A
Sbjct: 363 GTA 371
>11404
Length = 563
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Frame = +1
Query: 9 ERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHP 68
+RYE + +G+G++G V KA + T E A+K I+ + + A E+ LL+ +
Sbjct: 139 DRYEIDSLIGKGSFGQVVKAYDHTDNEQVAIKIIK---NKKPFLNQAQIEVKLLEMMNRH 309
Query: 69 N------VVRLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGI 122
+ +VRL L LVFE + +L + N +G+ ++ + QL +
Sbjct: 310 DTDNKYYIVRLKRHFMFRSHLCLVFELLSYNLYDLLRNTNFRGVSLNLTRKFAQQLCTAL 489
Query: 123 EVCH--KNKILHRDLKPQNLLI 142
+ I+H DLKP+N+L+
Sbjct: 490 LFLATPEMSIIHCDLKPENILL 555
>07291
Length = 833
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Frame = +1
Query: 117 QLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHE-----VV 171
Q+ G+ + K++HR+L +N +++++ L+L+D+G+ S P YT + +
Sbjct: 73 QIADGMAYLQEVKVVHRNLAARNCIVTEDGRLQLSDYGVT-GSLFPQSYYTADDSPARDL 249
Query: 172 TLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVN 205
W P + + H+S+ D+W+ G + E++
Sbjct: 250 VKWMAPETI--DNFHFSSKSDVWAFGVVLWELLT 345
>00638
Length = 1595
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Frame = +2
Query: 58 EISLLKELQH-PNVVRLHDVIHS--NKKLVLVFEFVDQ-DLKKFMNNFKDKGLDPHIIKS 113
EI +L+ L+ NV+ L ++ ++ L+FE V+ D K+ F D + I+
Sbjct: 266 EIKILENLRGGTNVITLLAIVKDPVSRTPALIFEHVNNTDFKQLYQTFTD-----YDIRF 430
Query: 114 LLYQLLKGIEVCHKNKILHRDLKPQNLLIS 143
LY+L+K ++ CH I+HRD+KP L++
Sbjct: 431 YLYELMKALDFCHSMGIMHRDVKPSPPLVN 520
>01392
Length = 1806
Score = 41.6 bits (96), Expect(2) = 3e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Frame = -1
Query: 114 LLYQLLKGIEVCHKNKILHRDLKPQNLL---ISKECILKLADFGLAR-----ASGIPVKN 165
++ + + ++ H I HRDLKP+N+L + +K+ DF LA G
Sbjct: 1776 VVRHIARALDFLHSKGIAHRDLKPENILCEHLDDVVPVKICDFDLASGISCDGDGTKTPE 1597
Query: 166 YTHEVVTLWYRPPDVLLG----SKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETD 217
V + Y P+V+ S Y D+WS+G I M+ P F G D
Sbjct: 1596 LLTPVGSAEYMAPEVVDAWVGDSFSYDKRCDLWSLGIILYIMLCGYPPFYGQCGED 1429
Score = 20.8 bits (42), Expect(2) = 3e-04, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 236 GLADLPNWKADAFEKYPGEPLQ 257
GL LP A +++PG PLQ
Sbjct: 1408 GLPRLPG---HAVQQHPGWPLQ 1352
>38316
Length = 679
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 64/133 (48%)
Frame = -3
Query: 455 IFDASKMPLGRMCQKIAFFLQGKHRPTFKNCDQVTYDNIIVVNAANIMLTGKKALLKTVK 514
++DA + + +I +LQG+H+P + V D+++V+N ++ + G
Sbjct: 623 LYDAEQQCPIKSAHRIIPYLQGRHKPIYHPLSDVG-DHVVVINTKDVAMQGDYWRKFRFF 447
Query: 515 YHTGFVGGLKEKSYKFFLTEKPEQLVNIYIQLVSKVFYCISKMLPKNLKRRDLLKKVEIY 574
+HTG+ GG S P ++ +Y+ + +++ P NL R+ L++++ ++
Sbjct: 446 HHTGYPGGFSAASAWRVHEIDPTRV--LYLSVYARI--------PGNLLRKGLVRRLHLF 297
Query: 575 RDFQHEKQGLPNV 587
D + L NV
Sbjct: 296 PDDNVPEDILANV 258
>31789
Length = 676
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Frame = +2
Query: 16 KLGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHD 75
++G G++ VYK + A +++ + ++ E +LKELQHPN+VR D
Sbjct: 341 EIGRGSFKTVYKGLDTELGVAVAWCELQDKKWNKTERQRFKEEAEMLKELQHPNIVRFFD 520
Query: 76 VI----HSNKK-LVLVFEFVDQD-LKKFMNNFKDKGLDPHIIKSLLYQLLKGI 122
H N+K ++LV E + LK ++ FK ++ ++K+ Q+LKG+
Sbjct: 521 YWEEHNHRNRKVIILVTELMTSGTLKTYLKRFKK--INLKVLKNWCRQILKGL 673
>02638
Length = 1490
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +1
Query: 172 TLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGT 228
T+ + P+VL G + Y + D+WS+GC+ EM +P + + ++ L IFK+ +
Sbjct: 25 TIAFMAPEVLRG-ESYGRACDVWSVGCVMIEMCTCRPPWNSHDISNHLALIFKIASS 192
>17300
Length = 480
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +1
Query: 131 LHRDLKPQNLLISKECILKLADFGLAR--ASGIPVKNYTH---EVVTLWYRPPDVLLGSK 185
+HRDL +N+L+++ + K+ADFGL+R S YT ++ W P + +
Sbjct: 40 VHRDLAARNILVNEILVCKVADFGLSREIESDTTEGAYTTKGGKIPVRWTAPEAI--AYR 213
Query: 186 HYSTSIDIWSIGCIFAEMVN 205
++++ D+WS G + E+++
Sbjct: 214 KFTSASDVWSFGVVMWEVMS 273
>26156
Length = 479
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -1
Query: 14 LNKLGEGTYGVVYKAREKTTKELYALKKIR--LESEDEGIPSTAIREISLLKELQHPNVV 71
L +G G+Y V + K TK +YA+K I+ L ++DE I + +P +V
Sbjct: 374 LRVIGRGSYAKVLQVEHKRTKRIYAMKVIKKELVNDDEDIDWVQTEKHVFETATNYPFLV 195
Query: 72 RLHDVIHSNKKLVLVFEFVD 91
LH S +L V EFV+
Sbjct: 194 GLHSCFQSESRLFFVIEFVN 135
>36481
Length = 806
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Frame = +2
Query: 18 GEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPN------VV 71
GEGT+G V + ++ + ALK I+ + A EI++L++L+ + V
Sbjct: 389 GEGTFGKVVQCKDLLKGDDIALKIIK---NVDKYREAAKLEINVLEKLREKDPHAKHMCV 559
Query: 72 RLHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKIL 131
++ D + + + F + + F+ + ++ + YQL + H+N++
Sbjct: 560 QMLDWFDYHGHVCISFHMLGLSVFDFLKDNSYGAYPIEQVRHISYQLCYAVNFLHENQLT 739
Query: 132 HRDLKPQNLL 141
H DLKP+N+L
Sbjct: 740 HTDLKPENIL 769
>21800
Length = 855
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Frame = +2
Query: 30 EKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHPNVVRLHDVIHSNKKLVLVFEF 89
E E+ LK +R + DE P+ + + LL + + V H + +VFE
Sbjct: 428 ETALDEIKLLKCVR--NSDETDPARE-KSVQLLDDFKISGVNGTH--------VCMVFEV 574
Query: 90 VDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCH-KNKILHRDLKPQNLLIS 143
+ +L K + +G+ H +K ++ Q+L+G+ H K I+H D+KP+N+LI
Sbjct: 575 LGYNLLKLIIRSNYQGIPVHNVKLIIRQVLEGLNYLHAKCNIIHTDIKPENILIC 739
>29360
Length = 363
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Frame = +3
Query: 27 KAREKTTKELYALKKIRLESEDEGIPSTAIR---EISLLKELQHP-----NVVRLHDVIH 78
K +K T E+ A+K ++ PS A + E+S+L+ L N VR +
Sbjct: 6 KCWKKGTSEIVAIKILK------NHPSYARQGQIEVSILQRLSQESADDYNFVRAFECFQ 167
Query: 79 SNKKLVLVFEFVDQDLKKFMNNFKDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQ 138
LVFE ++Q+L F+ K + L I+ + Q+L + + ++H DLKP+
Sbjct: 168 HKNHTCLVFEMLEQNLYDFLKQNKFQPLPLKYIRPITQQVLTALRKLKQLGLIHADLKPE 347
Query: 139 NLLI 142
N+++
Sbjct: 348 NIML 359
>12672
Length = 773
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +3
Query: 121 GIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARAS----GIPVKNYTHEVVTLWYR 176
GI+ + N +HRD+K N+L+ E K+ DF ++ G V+N + + T Y
Sbjct: 27 GIQYLNDNGHVHRDIKTANILLDSEYTAKVGDFATVVSAPSGEGKTVQNASVVIGTAAYL 206
Query: 177 PPDVLLGSKHY--STSIDIWSIGCIFAEMV 204
P+ + H+ ST +D +S G + E++
Sbjct: 207 APEAI----HFDVSTKLDSYSFGVVLLEVI 284
>18401
Length = 463
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 170 VVTLWYRPPDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGT 228
V T YR P+V+L +S D+WS+GCI E+ LF + + L + ++ G+
Sbjct: 449 VSTRHYRAPEVILELG-WSHPCDVWSVGCIMFELYTGYTLFQTHDNKEHLAMMERILGS 276
>37602
Length = 804
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = -1
Query: 117 QLLKGIEVCHKNKILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEV 170
+ LKG+ H+ +HRD+K N+L+++E +KLADF R S N++H V
Sbjct: 195 ETLKGLHYLHRRGKMHRDIKGANILLTEEGDVKLADF--WRVS----SNHSHNV 52
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 2 VMKNSKLERYEKLNKLGEGTYGVVYKAREKT 32
+ + + L+ +E + ++G GTYG VYKA+ T
Sbjct: 530 IQRRNPLDDFELIQRVGSGTYGDVYKAKA*T 438
>06358
Length = 1517
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 33/243 (13%)
Frame = +3
Query: 11 YEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESED-------EGIPSTAIREISLLK 63
Y ++ G G V+ A +K+TKE ++ +S D E I + L
Sbjct: 12 YNQVASAGPGLLWKVFAASKKSTKEEASVFVFEKKSVDRYSRRDREAIVEVLRVGVQQLT 191
Query: 64 ELQHPNVVRLHDVIH-SNKKLVLVFEFVDQDLKKFMNNF----------KDKGLDPHIIK 112
+L+HP ++ + + + S + L E V L + + +D L IK
Sbjct: 192 KLRHPKILAVINPLEESRETLAFATEPVFASLANVLGDLSSIXTVPKELQDYQLYDVEIK 371
Query: 113 SLLYQLLKGIEVCHKN-KILHRDLKPQNLLISKECILKLADFGLARASGIPVKNYTHEVV 171
L Q+ + + H + K++HR++ P+ ++++K KLA + S P
Sbjct: 372 HGLLQVTEALGFLHNDAKMMHRNVCPEAIMLTKLGSWKLAGYEFCVRSSDPQSTDPSYPF 551
Query: 172 TLW-------------YRPPDVLLGSKHYSTSIDIWSIG-CIFAEMVNLKPLFPGNSETD 217
W + P+ +L + T D++S+G +++ KPLF N E
Sbjct: 552 YEWRSDIAPVTQPHLDFMAPEYVL-TMQCGTGSDMFSLGLLVYSVFAKGKPLFECNGELS 728
Query: 218 ELK 220
K
Sbjct: 729 AFK 737
>15549
Length = 470
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 29/39 (74%)
Frame = -1
Query: 9 ERYEKLNKLGEGTYGVVYKAREKTTKELYALKKIRLESE 47
+ +E + ++G+G YG+V++A+ K ++ YA+K+I L S+
Sbjct: 218 DEFECIEQMGKGGYGIVFRAKNKVDEQEYAVKRIALPSD 102
>00394
Length = 548
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Frame = -2
Query: 10 RYEKLNK-LGEGTYGVVYKAREKTTKELYALKKIRLESEDEGIPSTAIREISLLKELQHP 68
R+ K +K +G G++ VYK + A +++ + ++ E +LKELQHP
Sbjct: 298 RFLKFDKEIGRGSFKTVYKGLDTELGVAVAWCELQDKKWNKAERQRFKEEAEMLKELQHP 119
Query: 69 NVVRLHDVI----HSNKK-LVLVFEFVDQD-LKKFMNNF 101
N+VR D H N+K ++LV E + LK ++ F
Sbjct: 118 NIVRFFDYWEEHNHRNRKVIILVTELMTSGTLKTYLKRF 2
>26009
Length = 886
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 102 KDKGLDPHIIKSLLYQLLKGIEVCHKNKILHRDLKPQNLLI 142
++K KS++ QL+ ++ H +++HRD+KP+N+LI
Sbjct: 690 RNKACGSREAKSVMKQLVSALDFMHSKQLVHRDIKPENVLI 812
>18481
Length = 437
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -1
Query: 117 QLLKGIEVCHKNKILHRDLKPQNLL--ISKECI-LKLADFGLAR 157
QLL +E H+ +HRDLKP N L + + C L + DFGL++
Sbjct: 173 QLLSRLEFIHQKCFIHRDLKPDNFLMGLGRHCHRLYIIDFGLSK 42
>07836
Length = 1478
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 127 KNKILHRDLKPQNLLISKECILKLADFGLA 156
K I HRD+K +N+L+ K +AD GLA
Sbjct: 1178 KPAIAHRDIKSKNILVKKNGTCCIADLGLA 1089
>20152
Length = 445
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +1
Query: 178 PDVLLGSKHYSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRI 222
P++LLG + + ++D+WS+G I +V + F ++++ L I
Sbjct: 1 PEILLGDSYDAPAVDVWSLGVILYMLVVGEAPFQEANDSETLTMI 135
>13078
Length = 773
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 187 YSTSIDIWSIGCIFAEMVNLKPLFPGNSETDELKRIFKLTGT 228
+S D+WSIGCI E+ LF + + L + ++ G+
Sbjct: 746 WSQPCDVWSIGCIMFELYTGYTLFQTHDNKEHLAMMERILGS 621
>17806
Length = 433
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +1
Query: 14 LNKLGEGTYG-VVYKAREKTTKELYALKKIRLESEDEGIPSTAI---REISLLKELQHPN 69
L +LG G +G V+ E+ T + K + +D+ + E++ +EL HPN
Sbjct: 64 LKELGTGWFGKVIESDAERITTGVSRSKVVVKMLKDDATKDEQLLFFEEVAPFRELDHPN 243
Query: 70 VVR-LHDVIHSNKKLVLVFEFVDQDLKKFMNNFKDK 104
+VR L N L+L+ +LK+++ N + +
Sbjct: 244 IVRLLGQCTEMNPMLMLMECAALGNLKQYLRNHRHQ 351
>19670
Length = 522
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 453 YHIFDASKMPLGRMCQKIAFFLQGKHRPTFKN 484
+H F S PLGR C+++ +F K+ P + N
Sbjct: 155 FHSFHNSSTPLGRTCEQLIYFR--KNTPKYNN 244
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00149300__3700.m00085Ribosomal_family_S4e_containing_protein
(370 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02793 274 5e-74
33444 86 2e-17
00106 83 1e-16
24890 42 4e-04
26735 30 1.7
>02793
Length = 980
Score = 274 bits (700), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 182/286 (63%)
Frame = -3
Query: 84 RGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQ 143
RG +K LKR APKSWML+KLGG + A +PS
Sbjct: 870 RGRRKSLKRCTAPKSWMLDKLGGNF-----------------------------APKPSA 778
Query: 144 GPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVR 203
GPHK RE LP+++LL+ RL YAL + I+ ++ V VDG+VR DK YP G MDV+
Sbjct: 777 GPHKSRECLPMAILLRNRLKYALTYDECKKIV--MQRLVKVDGRVRTDKTYPCGFMDVIT 604
Query: 204 IEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPN 263
IE+T++ FRILYD KGRFV+ + EEAKYKL +V +GP +P+IVT D RTIR+P+
Sbjct: 603 IERTNEFFRILYDVKGRFVVHRIKAEEAKYKLCRVKRVQVGPKGVPFIVTDDGRTIRYPD 424
Query: 264 PEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVK 323
P +K+ D++ D+ K+++F +SGN+ + G+N+GRVG I H E+H GSFDI H+K
Sbjct: 423 PLVKVNDSIVLDIATGKMKDFIKFDSGNLVMVTGGHNLGRVGTITHRERHPGSFDIVHIK 244
Query: 324 DAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERKRKFS 369
D G+ FATRL +FV+G+G K WI LP G GVR TI EER R+ +
Sbjct: 243 DTLGHTFATRLSYVFVIGKGSKQWISLPKGKGVRLTIAEERDRRLA 106
>33444
Length = 354
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Frame = -1
Query: 298 GNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVR 357
G N+GRVG + + E+H GSFDI H+KD++G+ FATRL N+F++G+G K +I LP G GV+
Sbjct: 351 GRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVK 172
Query: 358 ETILEERKRKFS 369
+I EER ++ +
Sbjct: 171 LSISEERDKRLA 136
>00106
Length = 473
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +2
Query: 306 IIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERK 365
++ H E+H GSFDI H+KD G+ FATRL +FV+G+G K WI LP G GVR TI EER
Sbjct: 182 LLTHRERHPGSFDIVHIKDTLGHTFATRLSYVFVIGKGSKQWISLPKGKGVRLTIAEERD 361
Query: 366 RKFS 369
R+ +
Sbjct: 362 RRLA 373
>24890
Length = 425
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 31/67 (46%)
Frame = +1
Query: 84 RGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQ 143
RG +K LKR APKSWML+KLGG +F A +PS
Sbjct: 310 RGRRKSLKRCTAPKSWMLDKLGG--------------NF---------------APKPSA 402
Query: 144 GPHKLRE 150
GPHK RE
Sbjct: 403 GPHKSRE 423
>26735
Length = 771
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +1
Query: 103 KLGGIWVITFFAFRLRKNDFI 123
+LGGIW++T FRLRK+ F+
Sbjct: 544 ELGGIWLLTDSTFRLRKSAFV 606
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00649500__3677.m00090oxidoreductase,
_short_chain_dehydrogenase/reductase_family_protein
(335 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03983 259 9e-70
18534 114 5e-26
03060 106 1e-23
21038 75 4e-14
05690 71 7e-13
36378 66 2e-11
00991 65 4e-11
11922 64 1e-10
07400 54 7e-08
36857 41 1e-07
05194 50 1e-06
18041 50 2e-06
23588 49 2e-06
05235 47 1e-05
27168 46 2e-05
35613 45 3e-05
12758 45 3e-05
12867 41 9e-04
18039 40 0.001
30783 35 0.039
31234 29 2.3
14715 29 2.6
09033 28 7.3
>03983
Length = 1099
Score = 259 bits (662), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 129/272 (47%), Positives = 180/272 (66%), Gaps = 1/272 (0%)
Frame = +2
Query: 57 KKKVTGQHIFITGSGSGIGRQMAIRFAKLGAKVTIADLNFEGATKVMNEIIALGYPNSAK 116
+K V GQ + ITG+GSG+G+ MA RF LG + + D+N E + + +G S K
Sbjct: 161 RKSVEGQRVLITGAGSGLGKLMAYRFMGLGCDLVLWDINTEAIEAMERD---MGQQVSCK 331
Query: 117 AYKMDVSNVQNVKQVFAEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSH 176
AY +D+S+ + + + + K+E G VDIL+NNAGIV+G+K L+ + +IEKT+ VN +H
Sbjct: 332 AYTVDLSSREQIYKAADQVKREVGGVDILVNNAGIVTGRKFLDCPDSLIEKTMEVNSNAH 511
Query: 177 HYTVREVLPDMLQRNKGHIVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEMNKL-K 235
+TV+ LP+ML +NKGHI++IAS AG GV GL DYCASKF AVGFDESLR E+ + K
Sbjct: 512 FWTVKAFLPNMLAQNKGHIISIASSAGLFGVTGLADYCASKFAAVGFDESLRFELEAMGK 691
Query: 236 KNIKTTCICPYFINTGMFDGAKTKIPLLLPILEENWTSQRIVNAILQEEPMLVTPFLLNI 295
+ TT +CPYFINTGMFDG KT+ PL+LPIL T +I+NA+L + ML+ P L
Sbjct: 692 TGVHTTVVCPYFINTGMFDGVKTRFPLILPILNPERTVDKIMNAMLTNQAMLIMPPSLYF 871
Query: 296 AIFIKSFLPVSVTDFIGDVLGANDSMNDFKGR 327
+ +K +P V + +G N+SM+ F GR
Sbjct: 872 SYALKGIVPERVGRLLIQYMGVNESMDSFVGR 967
>18534
Length = 406
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Frame = -2
Query: 114 SAKAYKMDVSNVQNVKQVFAEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNV 173
+ K Y +D+S+ + + Q A+ + G VD+LINNAGIV K E + +I+ T +N+
Sbjct: 405 NCKGYVVDISDREQIYQRAAQVIDDVGHVDVLINNAGIVCCKPFWELHDRVIQNTYNINI 226
Query: 174 TSHHYTVREVLPDMLQRNKGHIVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEMNK 233
SH++TV+ LP M++ N+GHIVT+ S+ G +G G DY A+K+ +GF ESL ++
Sbjct: 225 ISHYWTVKAFLPHMMRHNRGHIVTVGSVTGMLGTYGCSDYAATKYACIGFHESLLTDLKA 46
Query: 234 LKKN-IKTTCICPYF 247
+ I + ICPY+
Sbjct: 45 HGYDQIHMSLICPYY 1
>03060
Length = 1893
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 145/282 (51%), Gaps = 17/282 (6%)
Frame = -1
Query: 40 LLVYAIHTYLKSKGWLPKKKVTGQHIFITGSGSGIGRQMAIRFAKLGAKVTIADLNFEGA 99
L + I T++K + + G+ + +TG+ SG+G+ A F + G +V +A + E
Sbjct: 1749 FLWHRIRTFIKLRTR--AADIQGKVVLVTGASSGLGKACAKVFHQHGCQVILAGRSVERL 1576
Query: 100 -------TKVMNEIIALGYPNSAKAYKMDVSNVQNVKQVFAEAKQEFGPVDILINNAGIV 152
TK E+ A MD+ ++ +++Q+ A + FG VD++INNAGI
Sbjct: 1575 NAVKDYLTKSEGEVKAC----EPSVLAMDLEDLNSLQQLAERAVELFGKVDVVINNAGI- 1411
Query: 153 SGKKILENSEFMI-EKTIAVNVTSHHYTVREVLPDMLQRNKGHIVTIASIAGQIGVCGLV 211
S + +E++ + +K +AVN H ++ +LP M RN GHIV I+S+ G+I +
Sbjct: 1410 SYRGCIEDTSIQVDQKLMAVNYFGHVALIKGLLPHMQARNSGHIVGISSVQGKISIPYRS 1231
Query: 212 DYCASKFGAVGFDESLRMEMNKLKKNIKTTCICPYFINTGMFD----GAKTKIPLLLPIL 267
Y ASK F + LR E++ K IK + + P +I T + + G T ++
Sbjct: 1230 AYSASKHALQAFFDCLRAELSCTK--IKVSLLSPGYIKTNLSNNAVCGDGTTYGVMDKTT 1057
Query: 268 EENWT----SQRIVNAILQEEP-MLVTPFLLNIAIFIKSFLP 304
E T +Q +++AIL++EP ++V P + AI +++ P
Sbjct: 1056 EAGMTPEAVAQTVLHAILKQEPDVVVAPCVHKXAIVLRAVAP 931
>21038
Length = 377
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 73/126 (57%)
Frame = +3
Query: 78 MAIRFAKLGAKVTIADLNFEGATKVMNEIIALGYPNSAKAYKMDVSNVQNVKQVFAEAKQ 137
+ + A+ G KV + D+N +G + + E+++ +AKAYK DVS+ + ++ + ++
Sbjct: 3 ICLELARRGCKVAVVDVNSKGCYETV-ELLSKIPRCTAKAYKNDVSSPRELQLMAVRVEK 179
Query: 138 EFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSHHYTVREVLPDMLQRNKGHIVT 197
E GPV+IL+NNA ++ I+ + +N+ S+ T +E LP M+ R GH+V
Sbjct: 180 ELGPVEILVNNASLMPMTSTPHLKSDEIDTILQLNLGSYIMTTKEFLPKMITRKSGHLVA 359
Query: 198 IASIAG 203
+ ++AG
Sbjct: 360 VNALAG 377
>05690
Length = 1192
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 2/220 (0%)
Frame = +2
Query: 35 SVHTLLLVYAIHTYLKSKGWLPKKKVTGQHIFITGSGSGIGRQMAIRFAKLGAKVTIADL 94
+V + + ++ YL S P G+ +FITG +G+G +AI KLG KV A
Sbjct: 104 AVMVAIATFCLYNYLPS----PLLPAEGKAVFITGCDAGLGHLLAIHLDKLGVKV-FAGC 268
Query: 95 NFEGATKVMNEIIALGYPNSAKAYKMDVSNVQNVKQVFAEAKQEFGPVDI--LINNAGIV 152
F G + + +DV +++ V K+E ++ ++NNAGI+
Sbjct: 269 LFPGGEG--EQTLKAKCSQRLCTVPLDVCSLEIVTTAADTVKRELDGQELWGVVNNAGIM 442
Query: 153 SGKKILENSEFMIEKTIAVNVTSHHYTVREVLPDMLQRNKGHIVTIASIAGQIGVCGLVD 212
+ + ++K + VN +R LP L+R++G +V +AS G V
Sbjct: 443 HIGCLEVMGQADVDKILDVNYRGQVNVIRAFLP-FLRRSRGRLVNVASNTGIAPVPYHAV 619
Query: 213 YCASKFGAVGFDESLRMEMNKLKKNIKTTCICPYFINTGM 252
YCASK ESLR+E+ ++ + I P TG+
Sbjct: 620 YCASKAAVAALTESLRLELQPF--GVRVSTIIPSGYRTGI 733
>36378
Length = 552
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%)
Frame = -3
Query: 137 QEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSHHYTVREVLPDMLQRNKGHIV 196
Q FG +DIL+NNAG + ++ S + + + +NV + VLP M+QR +GH+V
Sbjct: 379 QHFGQIDILVNNAGRSQRAEWVKTSLDVDRQMLELNVLGVLSLTKAVLPHMMQRGRGHMV 200
Query: 197 TIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEMNKLKKNIKTTCICP 245
++SIAG+ G Y SK G+ ESLR+E + ++ C P
Sbjct: 199 VMSSIAGKCGAPMSGSYTGSKHALHGWFESLRVEGH--ADTLR*PCCVP 59
>00991
Length = 1146
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Frame = +2
Query: 112 PNSAKAYKMDVSNVQNVKQVFAEAKQ--EFGPVDILINNAGIVSGKKILENSEFMIEKTI 169
P S A + DVS ++V +F + G VD+ INNAG+ +L +
Sbjct: 452 PGSLTAVRCDVSKEEDVSAMFHMIRHNTSLGRVDVCINNAGLAHDAPLLTGDPAQWKHMF 631
Query: 170 AVNVTSHHYTVREVLPDMLQRN--KGHIVTIASIAGQIGVCGLVDYC--ASKFGAVGFDE 225
VNV +E M + N GHIV + S++G+ + +C ASKF E
Sbjct: 632 DVNVLGLMMVTKEAFTLMQENNIDDGHIVLVNSMSGKRVLNQKRTHCYAASKFAVTAIFE 811
Query: 226 SLRMEMNKLKKNIKTTCICPYFINT 250
LR E+ +LK I+ + +CP + T
Sbjct: 812 GLRNELRELKSKIRISQVCPGLVET 886
>11922
Length = 2153
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 11/181 (6%)
Frame = +1
Query: 59 KVTGQHIFITGSGSGIGRQMAIRFAKLGAKVTIADLNFEGATKVMNEIIALGYPNSAKAY 118
K+ G+ +FITG+ GIG+ +A++ AK GA + IA E K+ I
Sbjct: 91 KLVGKTVFITGASRGIGKAIAVKLAKDGANIVIAAKTAEAHPKLPGTIYTAAKEVEEAGG 270
Query: 119 K-----MDVSNVQNVKQVFAEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNV 173
K +D+ N VK A +FG +DIL+NNA +S L+ + +N
Sbjct: 271 KALPCIVDIRNEDQVKVAVKAAADKFGGIDILVNNASAISLTGTLQTPMKRYDLMNGINA 450
Query: 174 TSHHYTVREVLPDMLQRNKGHIVTIASIAGQIGVC--GLVDYCASKFG----AVGFDESL 227
+ + LP +L+ + HI+ I+ G V Y +K+G A+G E
Sbjct: 451 RGTYLCSQVCLPYLLRGSNPHILNISPPLNMSAKWFQGHVAYTMAKYGMSMCALGMAEEF 630
Query: 228 R 228
R
Sbjct: 631 R 633
>07400
Length = 1577
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 89/213 (41%), Gaps = 19/213 (8%)
Frame = -3
Query: 65 IFITGSGSGIGRQMAIRFAKLGAKVTIA--DLNFEGATKVMNEIIALGYPNSAKAYKMDV 122
+ ITG +GIG + A+ K G V D+ GA + L ++DV
Sbjct: 1431 VLITGCDTGIGHEAALEANKRGLTVVAGCLDVTSSGAQR-------LAEKKGVHVIRLDV 1273
Query: 123 SNVQNVKQV------FAEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSH 176
S+ ++V EAK + +INNAG N +E T ++T+
Sbjct: 1272 SSDESVANAMKSVSKLCEAKGLWA----VINNAGF--------NRMSPVELT---SMTTF 1138
Query: 177 HY--------TVR---EVLPDMLQRNKGHIVTIASIAGQIGVCGLVDYCASKFGAVGFDE 225
H+ TVR VLP +++R KG +VT++S G YC +KFG F +
Sbjct: 1137 HHVADVMLFGTVRVTKAVLP-LVRRAKGRVVTVSSDRGMTTPAYSSAYCIAKFGVEAFSD 961
Query: 226 SLRMEMNKLKKNIKTTCICPYFINTGMFDGAKT 258
RMEM K ++ I G F GA +
Sbjct: 960 VXRMEMKKYDVSVS-------IIQPGHFGGATS 883
>36857
Length = 697
Score = 40.8 bits (94), Expect(2) = 1e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Frame = +2
Query: 119 KMDVSNVQNVKQVFAEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSHHY 178
K DV++ ++ ++ F + K FG +DI++NNAGI G++ + EK + +N+
Sbjct: 47 KADVTSDEDTEKAFKQXKATFGRLDIVVNNAGI-GGER-----DDTWEKCVDINLKGPIR 208
Query: 179 TVREVLPDMLQRNKG--------HIVT--IASIAGQIGV 207
R L L+R+KG HI+ AS AG+ GV
Sbjct: 209 GTRLGLK-YLRRDKGGEGGVDHQHIICRRFASAAGRAGV 322
Score = 32.0 bits (71), Expect(2) = 1e-07, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 213 YCASKFGAVGFDESLRMEMNKLKKNIKTTCICPYFINTGM 252
YC +K G + F S+ + + I+ +CP F++T +
Sbjct: 321 YCGTKAGVMMFSRSVAAHKDYIDNGIRVNTLCPAFVDTPL 440
>05194
Length = 1075
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Frame = +1
Query: 187 MLQRNKGHIVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEMNKLKKNIKTTCICPY 246
M++R GHI+ I+S AG+ G GL Y SKF G +++R E+ +K TCI P
Sbjct: 22 MVKRESGHIINISSDAGRKGFPGLAVYSGSKFFVEGLSQAMRSEV--ADSGVKVTCIQPG 195
Query: 247 FINTGMF 253
+ T +F
Sbjct: 196 DVKTPLF 216
>18041
Length = 547
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Frame = -2
Query: 69 GSGSGIGRQMAIRFAKLGAKVTIADLNFEGATKVMNEIIALGYPNSAKAYKMDVSNVQNV 128
GS GIG+ A++ A+ G + + N E + V EI+ + S K D N
Sbjct: 546 GSTDGIGKCFALQLAEKGLDIVLISRNPEKLSAVAKEIVD-QHKVSVKVITADFKNAD-- 376
Query: 129 KQVFAEAKQEFGPVDI--LINNAGIVSGKK---ILENSEF--MIEKTIAVNVTSHHYTVR 181
++ K++ +DI L+NN G+++ + E +F + I VN+ +
Sbjct: 375 --IYDNIKRQLTGLDIGILVNNVGMLNRRNPGYFCEADDFEQFHQDIINVNILACVQMTG 202
Query: 182 EVLPDMLQRNKGHIVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRME 230
VLP+ML+R +G I+ IAS A + Y +K F ++L ME
Sbjct: 201 IVLPEMLERKRGLIINIASGAAIRPLPFFSVYSGTKAFISHFTQALNME 55
>23588
Length = 611
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 1/159 (0%)
Frame = +3
Query: 74 IGRQMAIRFAKLGAKVTIADLNFEGATKVMNEIIALGY-PNSAKAYKMDVSNVQNVKQVF 132
IG +A+ + GA++++ + V+ + +A G P D+++ +Q+
Sbjct: 3 IGAGIAVCLGERGARLSLTGRDATKLENVVQKCVAAGVKPTDVVTVAGDLTDETFRQQLV 182
Query: 133 AEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSHHYTVREVLPDMLQRNK 192
A +FG +D+L+NNAG + + + + ++N+ +H + +P +LQ +K
Sbjct: 183 ASTVDKFGQIDVLVNNAGFANPGLLSBPGMENLLNVFSLNLNAHVAMSKLCVPHLLQ-SK 359
Query: 193 GHIVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEM 231
G+IV I+S L YC SK F L E+
Sbjct: 360 GNIVNISSNLSMRPSPALGAYCMSKRHWTCFTRVLAYEL 476
>05235
Length = 944
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 88/207 (42%), Gaps = 8/207 (3%)
Frame = -2
Query: 65 IFITGSGSGIGRQMAIRFAKLGAKVTIADLNFEGATKVMNEIIALGYPNSAKAYKMDVS- 123
IF+ G G GIG K G K + E + E+ A+ + Y DV+
Sbjct: 859 IFVAGLG-GIGLDTNHEIVKSGPKNLVILDRIENPAAIA-ELKAINPKVTISYYPYDVTV 686
Query: 124 ----NVQNVKQVFAEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSHHYT 179
+V+ +K VFA+ K+ VD+LIN AGI+ + IE+TIAVN T T
Sbjct: 685 SVAESVKLLKTVFAQLKK----VDLLINGAGIL--------DDHQIERTIAVNFTGTVNT 542
Query: 180 VREVLPDMLQRNKGH---IVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEMNKLKK 236
++ +R G I I S+ G + + Y ASK A+ F N L K
Sbjct: 541 TTAIMEFWDKRKGGPGGVIANICSVTGFNSIYQVPVYSASKAXALSF-------TNSLAK 383
Query: 237 NIKTTCICPYFINTGMFDGAKTKIPLL 263
T + Y IN G+ T PL+
Sbjct: 382 LAHITGVTVYSINPGI-----THTPLV 317
>27168
Length = 665
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Frame = +3
Query: 55 LPKKKVTGQHIFITGSGSGIGRQMAIRFAKLGAKVTIADLNFEGATKVMNEIIALGYPNS 114
L K + G+ ITG+ GIG + A A G ++ +A N A + ++ IA+ P +
Sbjct: 165 LHGKDLHGRVALITGANCGIGFETARSLALHGCEIILACRNLATAQEAIDR-IAVERPAA 341
Query: 115 ---AKAYKMDVSNVQNVKQVFAEAKQEFGPVDILINNAGIVS--GKKILENSEFMIEKTI 169
+ +D+ ++ +VK+ + +Q G +D LI NAG+ + K ++ +E T
Sbjct: 342 RARCRTASLDLGSLSDVKKFVEQIRQSVGHIDYLILNAGVFALPYTKTVDG----LETTF 509
Query: 170 AVNVTSHHY 178
V+ SH Y
Sbjct: 510 QVSHLSHFY 536
>35613
Length = 977
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 6/198 (3%)
Frame = +1
Query: 65 IFITGSGSGIGRQMAIRFAKLGAKV--TIADLNFEGATKVMNEIIALGYPNSAKAYKMDV 122
+ ITG +G G +A + G V T+ + +GA ++ + + +DV
Sbjct: 94 VLITGCDTGFGHALAKSLHEDGCHVIATVYQPDGDGAKRLRDVST-----DRMTVIPLDV 258
Query: 123 SNVQNVKQVFAEAKQ--EFGPVDILINNAG--IVSGKKILENSEFMIEKTIAVNVTSHHY 178
S+ +V++ KQ E + L+NNAG V ++ ++++ I N+
Sbjct: 259 SSDDSVEKCLRHVKQLCEHSGLWGLVNNAGHNFVGEVELTTMRQYLMVANI--NIFGMVR 432
Query: 179 TVREVLPDMLQRNKGHIVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEMNKLKKNI 238
T R LP +L+ G IV + SI GQ+ Y +K+ F E +MEM + +
Sbjct: 433 TTRAFLP-LLRHATGRIVNVTSIKGQLSTPMNAAYNITKYAGETFSEITQMEMKQF--GV 603
Query: 239 KTTCICPYFINTGMFDGA 256
K + + P G F GA
Sbjct: 604 KVSIVEP-----GNFGGA 642
>12758
Length = 804
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%)
Frame = -1
Query: 121 DVSNVQNVKQVFAEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSHHYTV 180
D++ + K+V E ++FG ++IL+N AGI+ I S ++ NV S ++
Sbjct: 717 DLTKEDDTKRVVEETVKQFGRLNILVNCAGIIELGNIENTSLDQYDRMFNTNVRSVYHLT 538
Query: 181 REVLPDMLQRNKGHIVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEM 231
+P ++ +G+IV ++S+ G ++ YC +K F + +E+
Sbjct: 537 MLAVPHLVN-TQGNIVNVSSVNGMRSFPNVLAYCMAKSAIDQFTRCVALEL 388
>12867
Length = 858
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Frame = -3
Query: 120 MDVSNVQNVKQVFAEAKQEFGPVDILINNAGIVSGKKILENSEFMIEKTI-AVNVTSHHY 178
MD+ ++ + F +D+L+NNAG S + E +++ + ++V +
Sbjct: 778 MDMLQLEEHQSHLYTVLNHFDRLDVLVNNAG-RSQRANWTEIEIQVDRDLFELDVFAVVN 602
Query: 179 TVREVLPDMLQRN--KGHIVTIASIAGQIGVCGLVDYCASKFGAVGFDESLRMEMNKLKK 236
R V+ L++N +GHI +SIAG V YCA+K + SL+ME KL
Sbjct: 601 LSRLVVRYYLEQNGGRGHIAATSSIAGFSPVPFSATYCAAKHALNAYLMSLKMEHRKLDV 422
Query: 237 NI 238
I
Sbjct: 421 TI 416
>18039
Length = 486
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = -2
Query: 199 ASIAGQIGVCGLVDYCASKFGAVGFDESLRMEMNKLKKNIKTTCICPYFINT 250
+S+AGQ+G+ G Y +SKF G ESL+ME+ NI+ T P +T
Sbjct: 485 SSMAGQLGLFGYTAYSSSKFALRGLAESLQMELR--PHNIQVTLAFPPDTDT 336
>30783
Length = 765
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +2
Query: 139 FGPVDILINNAGIVSGKKILENSEFMIEKTIAVNVTSHHYTVREVLPDMLQR 190
FG +DIL+NNAG+ K + +E ++ + +N+ S + + + P++++R
Sbjct: 23 FGRLDILVNNAGVARFVKPCDTTEEQYDEIMDINMKSVFFLSKLLAPELIKR 178
>31234
Length = 476
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 213 YCASKFGAVGFDESLRMEMNKLKKNIKTTCICPYFINTGMFDGAKTKIPLLLP 265
Y ASKF G + + + + ++ C+CP F +T M + K LL P
Sbjct: 32 YTASKFAISGLTQCWSLNPHIKEMGLRFACLCPAFTDTPM---XQNKESLLYP 181
>14715
Length = 797
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = -3
Query: 257 KTKIPLLLPILEENWTSQRIVNAILQEEPMLVTPFLLNIAIFIKSFLPVSVTDFIGDVL 315
+T IPL L I A +Q P L+TPFLLN+ P + TD + +VL
Sbjct: 228 ETHIPLAL----------MIKKADVQTHPPLLTPFLLNLTTNHSHDDPDAGTDLLNEVL 82
>09033
Length = 1327
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 233 KLKKNIKTTCICPYFINTGMFDGAKTKIP 261
K + N + CIC Y +N GMF G P
Sbjct: 13 KTEHNDQNACICVYCLNNGMF*GTMN*SP 99
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00630500__3831.m01458EF_hand_family_protein
(149 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
14594 256 3e-69
22063 103 2e-33
14945 102 3e-33
14366 136 3e-33
38338 134 2e-32
05237 124 2e-29
20251 114 1e-26
01019 107 1e-24
26610 104 2e-23
17484 80 2e-23
18171 102 9e-23
06641 97 2e-21
11425 94 2e-20
16255 74 3e-14
07385 69 9e-13
08108 64 2e-11
19942 62 1e-10
26019 57 3e-09
01491 57 4e-09
01773 55 1e-08
04067 52 7e-08
22273 52 1e-07
04697 49 7e-07
19912 45 1e-05
15966 44 2e-05
07198 43 4e-05
26849 42 9e-05
04643 41 2e-04
00167 40 3e-04
05230 39 9e-04
13028 38 0.001
32088 36 0.005
18677 35 0.009
28617 35 0.015
35350 35 0.016
27864 33 0.037
08380 33 0.047
03732 33 0.055
22490 32 0.12
28023 30 0.28
07678 30 0.43
12671 29 0.78
33397 28 1.7
13551 28 1.8
02929 28 1.8
35579 27 2.8
>14594
Length = 1014
Score = 256 bits (654), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 127/145 (87%), Positives = 135/145 (93%)
Frame = +3
Query: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
LT+EQ+AEFKEAFSLFDKDGDGTITT ELGTVMRSLGQNPTE ELQDMINEVDADGNGTI
Sbjct: 423 LTDEQVAEFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTI 602
Query: 65 DFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDE 124
DF EFL +MARKMKDTD EEEL EAF+VFD+DGNG ISAAELRHVMTNLGEKLTDEEVDE
Sbjct: 603 DFEEFLHMMARKMKDTDCEEELREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 782
Query: 125 MIREADIDGDGHINYEEFVRMMMAK 149
MI+EAD+DGDG +NYEEFV MM AK
Sbjct: 783 MIKEADLDGDGMVNYEEFVTMMTAK 857
>22063
Length = 688
Score = 103 bits (256), Expect(2) = 2e-33, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 69/96 (71%)
Frame = +3
Query: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
+LTEEQ E +EAF LFD DG GTI KEL MR+LG P + E++ MI E+D +G GT
Sbjct: 150 ELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGT 329
Query: 64 IDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNG 99
IDF +FL++M +KM + D +EE+++AF++FD D G
Sbjct: 330 IDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDETG 437
Score = 55.5 bits (132), Expect(2) = 2e-33, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +1
Query: 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMM 146
IS L+ V LGE LTDEE+ EMI EAD DGDG IN EEF+R+M
Sbjct: 442 ISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIM 579
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +3
Query: 83 EEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEF 142
++E+ EAF +FD DG+G I A EL+ M LG + EE+ +MI E D +G G I++ +F
Sbjct: 168 KQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDF 347
Query: 143 VRMMMAK 149
+ +M K
Sbjct: 348 LTIMTQK 368
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +1
Query: 26 GTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 75
I+ + L V + LG+N T+ ELQ+MI+E D DG+G I+ EFL +M +
Sbjct: 436 AKISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMKK 585
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 70 LSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVM 110
L +A+++ + T+EEL E DRDG+G I+ E +M
Sbjct: 457 LKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIM 579
>14945
Length = 1337
Score = 102 bits (254), Expect(2) = 3e-33, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 69/96 (71%)
Frame = +1
Query: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
+LTEEQ E +EAF LFD DG GTI KEL MR+LG P + E++ MI E+D +G GT
Sbjct: 91 ELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGT 270
Query: 64 IDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNG 99
IDF +FL++M +KM + D +EE+++AF++FD D G
Sbjct: 271 IDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDETG 378
Score = 55.5 bits (132), Expect(2) = 3e-33, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%)
Frame = +2
Query: 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMM 146
IS L+ V LGE LTDEE+ EMI EAD DGDG IN EEF+R+M
Sbjct: 383 ISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIM 520
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +1
Query: 83 EEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEF 142
++E+ EAF +FD DG+G I A EL+ M LG + EE+ +MI E D +G G I++ +F
Sbjct: 109 KQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDF 288
Query: 143 VRMMMAK 149
+ +M K
Sbjct: 289 LTIMTQK 309
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +2
Query: 26 GTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 75
I+ + L V + LG+N T+ ELQ+MI+E D DG+G I+ EFL +M +
Sbjct: 377 AKISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMKK 526
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 70 LSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVM 110
L +A+++ + T+EEL E DRDG+G I+ E +M
Sbjct: 398 LKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIM 520
>14366
Length = 499
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 103/143 (72%)
Frame = -3
Query: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
QL +E E +EAF + + D TI +LG V+RS+G+ PTE++L+ + E + G T
Sbjct: 479 QLRQE---ELQEAF-IMNCSPDNTIALNKLGIVVRSIGRAPTESQLKTLTMEFENRGKRT 312
Query: 64 IDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVD 123
+ E ++++ + +T + L EAF++FD++GNG+I+AAELRHV+T+LGEKL+DEEVD
Sbjct: 311 LTLQEVIAIVTKYEFAPETSDNLREAFRIFDKEGNGMINAAELRHVLTHLGEKLSDEEVD 132
Query: 124 EMIREADIDGDGHINYEEFVRMM 146
EMIREADI GDG ++Y +FV++M
Sbjct: 131 EMIREADISGDGQVSYNDFVKVM 63
>38338
Length = 463
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = -2
Query: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG
Sbjct: 198 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 19
Query: 61 NGTIDF 66
NGTIDF
Sbjct: 18 NGTIDF 1
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Frame = -2
Query: 77 MKDTDTEEELIE---AFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133
M D TEE++ E AF +FD+DG+G I+ EL VM +LG+ T+ E+ +MI E D DG
Sbjct: 198 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 19
Query: 134 DGHINY 139
+G I++
Sbjct: 18 NGTIDF 1
>05237
Length = 472
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 67/72 (93%)
Frame = +3
Query: 78 KDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHI 137
K+TDT++EL EAF+VFD+DGNG ISA+ELRHVMTNLGEKLTDEEVDEMIREADIDGDG +
Sbjct: 9 KETDTDDELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 188
Query: 138 NYEEFVRMMMAK 149
NYEEFV+MM K
Sbjct: 189 NYEEFVKMMTTK 224
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%)
Frame = +3
Query: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLS 71
E +EAF +FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG+G +++ EF+
Sbjct: 30 ELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVK 209
Query: 72 LMARK 76
+M K
Sbjct: 210MMTTK 224
>20251
Length = 2203
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 91/140 (65%)
Frame = +3
Query: 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 66
+ QI EFKEAF++ D++ DG I ++LG ++ SLG+NPTE +L +M+N G I+F
Sbjct: 147 QSQIQEFKEAFNMIDQNRDGFIDKEDLGDMLASLGKNPTEGQLDEMMNXAP----GPINF 314
Query: 67 PEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMI 126
FL++ K+ TD E+ + AF FD DG G+I LR ++T +G++ TD+EVDEM
Sbjct: 315 TMFLTMFGDKLNGTDPEDVIKNAFACFDEDGKGVIQEDRLRELLTTMGDRFTDDEVDEMF 494
Query: 127 READIDGDGHINYEEFVRMM 146
R+A I G+ +Y EF R++
Sbjct: 495 RDAPIKR-GNFDYLEFTRIL 551
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Frame = +3
Query: 77 MKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGH 136
M D +E EAF + D++ +G I +L ++ +LG+ T+ ++DEM+ A G
Sbjct: 138 MFDQSQIQEFKEAFNMIDQNRDGFIDKEDLGDMLASLGKNPTEGQLDEMMNXA----PGP 305
Query: 137 INYEEFVRMM 146
IN+ F+ M
Sbjct: 306 INFTMFLTMF 335
>01019
Length = 1705
Score = 107 bits (268), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/58 (87%), Positives = 54/58 (93%)
Frame = +1
Query: 92 VFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149
VFD+DGNG ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG +NYEEFV MM +K
Sbjct: 43 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 216
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%)
Frame = +1
Query: 19 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 76
+FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG+G +++ EF+++M K
Sbjct: 43 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 216
>26610
Length = 455
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 89/132 (67%)
Frame = +3
Query: 15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMA 74
EAF LFD D DG I E+GT +RSLG T+++L+ ++++ + +G +D F L+
Sbjct: 54 EAFELFDTDNDGKIAASEVGTAIRSLGHVVTDSDLRRLLSKAGIEPHGKVDMNRFRQLV- 230
Query: 75 RKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD 134
+ ++ + ++L EAF D++G+G + A ELRH++T++G+++TDEE + ++ E ++D +
Sbjct: 231 QPLQGVNYTKQLDEAFNTIDKEGSGFVMATELRHLLTHMGDRITDEEFNALLEELEVDSN 410
Query: 135 GHINYEEFVRMM 146
G + +EFV+++
Sbjct: 411 GRVRRKEFVQLL 446
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +3
Query: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLS 71
+ EAF+ DK+G G + EL ++ +G T+ E ++ E++ D NG + EF+
Sbjct: 261 QLDEAFNTIDKEGSGFVMATELRHLLTHMGDRITDEEFNALLEELEVDSNGRVRRKEFVQ 440
Query: 72 LMAR 75
L++R
Sbjct: 441 LLSR 452
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%)
Frame = +3
Query: 82 TEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEE 141
+++ + EAF++FD D +G I+A+E+ + +LG +TD ++ ++ +A I+ G ++
Sbjct: 36 SKDAVSEAFELFDTDNDGKIAASEVGTAIRSLGHVVTDSDLRRLLSKAGIEPHGKVDMNR 215
Query: 142 FVRMM 146
F +++
Sbjct: 216 FRQLV 230
>17484
Length = 471
Score = 80.1 bits (196), Expect(2) = 2e-23, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Frame = -3
Query: 68 EFLSLMARKMKD-TDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMI 126
EFL L+ +MK ++ ++E+ +AF+ FD++G+G+IS +ELR M +G+KL+D +V+ +I
Sbjct: 322 EFLPLIVGRMKGGSEKDKEMRDAFRAFDQNGDGVISISELRQAMAKMGQKLSDADVESII 143
Query: 127 READIDGDGHINYEEFVRMMMAK 149
R+ D DGDG +NYEEF + + +
Sbjct: 142 RDVDKDGDGFVNYEEFTKFIAGQ 74
Score = 44.3 bits (103), Expect(2) = 2e-23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = -1
Query: 20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 66
+D+DG+G IT E +V+R LG + +E EL++M+ D D +G I+
Sbjct: 465 YDQDGNGKITRNEFRSVVRMLGHSLSEKELEEMMQAADTDASGAIEL 325
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%)
Frame = -3
Query: 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 67
E+ E ++AF FD++GDG I+ EL M +GQ ++A+++ +I +VD DG+G +++
Sbjct: 280 EKDKEMRDAFRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRDVDKDGDGFVNYE 101
Query: 68 EFLSLMA 74
EF +A
Sbjct: 100 EFTKFIA 80
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = -1
Query: 93 FDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHI 137
+D+DGNG I+ E R V+ LG L+++E++EM++ AD D G I
Sbjct: 465 YDQDGNGKITRNEFRSVVRMLGHSLSEKELEEMMQAADTDASGAI 331
>18171
Length = 1131
Score = 102 bits (253), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 73/100 (73%), Gaps = 3/100 (3%)
Frame = +3
Query: 52 MINEVDADGNGTIDFPEFLSLMARKMKDTDTEEE---LIEAFKVFDRDGNGLISAAELRH 108
+I++V G +DFP+FL+LMAR + D +EE ++EA + D+D G+IS A LRH
Sbjct: 60 LIHDVSNSNQGKVDFPDFLTLMARTVGSKDPQEEDDAMLEALTLLDKDQTGVISTALLRH 239
Query: 109 VMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMA 148
V+T LG++LT EEV+E+I+EAD + G ++Y+EF++MMM+
Sbjct: 240 VLTTLGDQLTSEEVEELIKEADKEETGQVDYKEFIKMMMS 359
>06641
Length = 726
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 6/139 (4%)
Frame = +1
Query: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGTIDFPEFLS--- 71
AF +FD + + T+ +E+GT++RSLG P+EAEL DM+ E+ + + G I F +FL
Sbjct: 208 AFDIFDHEANKTVDVREVGTIIRSLGCCPSEAELHDMLAEIEEEEPTGYIRFEKFLPMMT 387
Query: 72 --LMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREA 129
LM R+ K E+++++AF+V D +G G + EL MT GE T EE++EM+ +A
Sbjct: 388 KVLMERRYKAV-PEDQIVKAFQVLDVEGRGYLLQEELSKYMTEEGEPFTSEELEEMMSQA 564
Query: 130 DIDGDGHINYEEFVRMMMA 148
G+I Y+++ +M A
Sbjct: 565 LDPEKGYIPYKDYASLMAA 621
>11425
Length = 599
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 9/153 (5%)
Frame = -2
Query: 4 QLTEEQIAEFKEAFSLFD-KDG-DGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD-- 59
L++ I + E F LFD DG DG + ++G + LG NPT Q++I +
Sbjct: 580 SLSKSDIEDITEVFELFDFWDGRDGDVDAFKVGDMCFCLGLNPT----QEIIRKNGGTTK 413
Query: 60 -GNGTIDFPEFLSLM--ARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEK 116
G EFL + K KDT T + +E FK FDR+G G ISAAELRH++T LGE+
Sbjct: 412 LGEKAYKLEEFLPIYETISKEKDTGTFADFMEGFKTFDREGQGFISAAELRHLLTGLGER 233
Query: 117 LTDEEVDEMIREADI--DGDGHINYEEFVRMMM 147
L+D+EVDE+I+ D D +G++ YE+F++ ++
Sbjct: 232 LSDDEVDELIKATDTREDLEGNVKYEDFIQKVL 134
>16255
Length = 767
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 37/40 (92%)
Frame = -2
Query: 110 MTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149
MTNLGEKLTDEEVDEMIREADIDGDG +NYEEFV MM +K
Sbjct: 766 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 647
>07385
Length = 1292
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = +3
Query: 101 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149
ISA +LR +KLTDEEVDEMIREADIDGDG +NYEEFV+MM K
Sbjct: 114 ISAGQLRGARF---QKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTTK 251
>08108
Length = 818
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%)
Frame = +2
Query: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70
AE + AF++FD DG G+I+ ELG +R+ G + T+ + ++I + D+D NG ID EF
Sbjct: 125 AECQTAFAVFDTDGSGSISAGELGEALRAQGADITDDQTAELIKKYDSDSNGDIDTDEFR 304
Query: 71 SLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREAD 130
L+ + D + FK D DG+G I+A+E+ TD + M+ A
Sbjct: 305 KLVEGE-SDVARLAQSALMFKSLDADGDGQITASEITEAQGKKTIGATDGQFAAMVEAA- 478
Query: 131 IDGDGHINYEEFVRM 145
G + + F++
Sbjct: 479 --AGGVLTFAAFLKC 517
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +2
Query: 82 TEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEE 141
T+ E AF VFD DG+G ISA EL + G +TD++ E+I++ D D +G I+ +E
Sbjct: 119 TDAECQTAFAVFDTDGSGSISAGELGEALRAQGADITDDQTAELIKKYDSDSNGDIDTDE 298
Query: 142 FVRMM 146
F +++
Sbjct: 299 FRKLV 313
>19942
Length = 367
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = +2
Query: 109 VMTNLGEKLTDEEVDEMIREADIDGDGHINYE 140
VMTNLGEKLTDEEVDEMIREADIDGDG +NY+
Sbjct: 2 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYD 97
>26019
Length = 1561
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +2
Query: 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 76
F D D G+++ E + + L QNP +Q +I+ D DGNG +DF EF+ +++
Sbjct: 116 FRKLDLDNSGSLSIDEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGISQF 283
Query: 77 MKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNL-GEKLTDEEVDEMI 126
D E +L AFK++D D +G IS EL V+ + G L D ++ +++
Sbjct: 284 SVKGDKESKLRFAFKIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIV 436
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 84 EELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFV 143
+ L + F+ D D +G +S E +L E + V +I D DG+G ++++EF+
Sbjct: 98 QRLGKRFRKLDLDNSGSLSIDEF----MSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFI 265
>01491
Length = 1707
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +1
Query: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLM 73
AF + DK G I ++L +++SLG + TE E++DMI E D DG+GT+D+ EF +LM
Sbjct: 361 AFRVLDKGNKGVIPVEDLRWLLKSLGDDLTEDEIEDMIVETDTDGSGTVDYEEFRTLM 534
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG 41
Q+TE+ + + F LFDK G+GT++TKEL V +SLG
Sbjct: 107 QITEKMYNDASQTFHLFDKKGNGTVSTKELANVFKSLG 220
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +2
Query: 88 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEV 122
+ F +FD+ GNG +S EL +V +LG ++ DE++
Sbjct: 140 QTFHLFDKKGNGTVSTKELANVFKSLGLQVEDEKL 244
>01773
Length = 1950
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Frame = +1
Query: 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD-GNGTIDFPEFLS 71
+K+ F DK+ DG + KEL + + G + +++++ D D G+ I F F
Sbjct: 160 YKQLFKEADKNNDGYLEIKELRELFKRNGSSLSDSQIADTFVFFDGPRGDKRITFEXFCK 339
Query: 72 LMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADI 131
+ + + ++L E FK D+ G+G + EL+ ++ G+K T ++V +++ AD
Sbjct: 340 GLDQIVMFV---QKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADK 510
Query: 132 DGDGHINYEEFV 143
+ D I +EEFV
Sbjct: 511 NNDNKICFEEFV 546
>04067
Length = 1920
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -1
Query: 19 LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLM 73
+ DK G I ++L +++SLG + TE E++DMI E D DG+GT+D+ EF LM
Sbjct: 1920 VLDKGNKGVIPVEDLRWLLKSLGDDLTEDEIEDMILETDTDGSGTVDYEEFYKLM 1756
>22273
Length = 297
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +1
Query: 122 VDEMIREADIDGDGHINYEEFVRMMMAK 149
VDEMIREADIDGDG +NYEEFV+MM K
Sbjct: 1 VDEMIREADIDGDGQVNYEEFVKMMTTK 84
>04697
Length = 559
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +1
Query: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
T+++I ++ + F D G +T +L + +G+ TE +L D+++EVD N +
Sbjct: 343 FTKDEINQYVKRFKSLDYQNKGFVTVNDLRRYFKKMGEKVTEDQLHDILSEVDLSRNAQV 522
Query: 65 DFPEFLSLM 73
D EFL LM
Sbjct: 523 DLGEFLQLM 549
>19912
Length = 865
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 62 GTIDFPEF---LSLMARKMKDTDTEE-ELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL 117
GT+ P+ L M + M D+ L++ F FD++G I+ + R +T L
Sbjct: 590 GTVAPPKPKPRLHPMVKLMAYIDSNNLRLVDFFNKFDKEGTMSITRDQFRQGLTEASIPL 769
Query: 118 TDEEVDEMIREADIDGDGHINYEEFV 143
+EVD ++ E D DGDG INY E V
Sbjct: 770 AGDEVDFLLDELDRDGDGEINYSELV 847
>15966
Length = 362
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +2
Query: 84 EELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFV 143
++L E FK D+ G+G + EL+ ++ G+K T ++V +++ AD + D I +EEFV
Sbjct: 134 QKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 313
>07198
Length = 1675
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%)
Frame = -3
Query: 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 67
E + E ++ F D + DG++ +KE + + + EL+ + + D + +GTI
Sbjct: 491 ELVDEDRKVFDAADANKDGSLNSKEYFAFF--MPNSFPQLELERFMRQSDKNKDGTISME 318
Query: 68 EFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIR 127
EF+ A DT T E E+FK +D+D +G +S E + ++ D EV+ +
Sbjct: 317 EFMPEGA--TGDTRTSSE--ESFKNYDKDKDGSLSLEEAMEWINPSSDEHADVEVEHLFT 150
Query: 128 EADIDGDGHINYEEFV 143
D++ DG ++ +E +
Sbjct: 149 IGDVNHDGKLSKDEIL 102
>26849
Length = 649
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
I AF + DKDG ++ +E + + + EA+++DM D DGNGTI+ EF
Sbjct: 164 ILGLARAFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIEDMFYRFDNDGNGTINMTEF 343
Query: 70 L 70
L
Sbjct: 344 L 346
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +2
Query: 86 LIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFV 143
L AF+V D+DG+ ++S E + + ++ + + ++++M D DG+G IN EF+
Sbjct: 173 LARAFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIEDMFYRFDNDGNGTINMTEFL 346
>04643
Length = 1881
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +2
Query: 98 NGLISAAELR-HVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMA 148
+G + A E++ HV G+ +++E +D ++ ++D DG+G INY+EF+ A
Sbjct: 2 SGCLCADEIKAHVRALTGDDMSEEALDNLVSKSDADGNGKINYKEFLASWTA 157
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +2
Query: 26 GTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLS 71
G + E+ +R+L G + +E L +++++ DADGNG I++ EFL+
Sbjct: 5 GCLCADEIKAHVRALTGDDMSEEALDNLVSKSDADGNGKINYKEFLA 145
>00167
Length = 2176
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 45 TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELI-EAFKVFDRDGNGLISA 103
T EL ++ D DG GT+DF EFL + KM + +L+ +AF D+ G+G+I+A
Sbjct: 834 TSEELNEVFRRFDKDGTGTLDFEEFLLALRPKM--NEFRRKLVKKAFAKMDKTGDGIITA 1007
Query: 104 AEL 106
+L
Sbjct: 1008DDL 1016
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 82 TEEELIEAFKVFDRDGNGLISAAE----LRHVMTNLGEKLTDEEVDEMIREADIDGDGHI 137
T EEL E F+ FD+DG G + E LR M KL + +M D GDG I
Sbjct: 834 TSEELNEVFRRFDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKM----DKTGDGII 1001
Query: 138 NYEEFV 143
++ V
Sbjct: 1002TADDLV 1019
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Frame = +3
Query: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN---------G 62
E E F FDKDG GT+ +E +R ++ ++D G+ G
Sbjct: 843 ELNEVFRRFDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVG 1022
Query: 63 TIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAEL 106
T D ++ +E ++ F V D D +G+I+ AE
Sbjct: 1023TYDVRSHPRYQNGELTKKQVYQEFLDNFVVGDND-DGVITMAEW 1151
>05230
Length = 843
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Frame = -2
Query: 25 DGTITTKELGTVMRSLG-QNPTEAE--LQDMINEVDADGNGTIDFPEFLSLMARKMKDTD 81
DG + E +M LG N EA L D +V+ D + E++S+M+ D
Sbjct: 815 DGRLNLFEFTRLMTLLGLPNAQEAAKVLFDKQTKVERD---RLRMEEYISIMSDASVDMK 645
Query: 82 TEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEE 141
T + F FD DG+G S ++ + N+G +T ++ I+ D + DG INY +
Sbjct: 644 TNM-WRKLFAQFDTDGSGWASREDVIEGLENIGITIT-PDLRAKIKAMDGNKDGKINYAD 471
Query: 142 FVRMMM 147
F+RM +
Sbjct: 470 FLRMQL 453
>13028
Length = 1273
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Frame = -1
Query: 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDAD-----GNGT--IDFPEFLSLMARKMKD 79
TI E+ VMR+LG PTE E++DM+NEV G +D F+ L
Sbjct: 1063 TIPLSEVPFVMRALGFYPTEQEIEDMLNEVKFSRYVETGQYVEELDLGTFIKLYVNHRPA 884
Query: 80 TD-TEEELIEAFKVF--DRDGNGLISAAELRHVMTNLGEKLTDEEVDEMI 126
+ ++L AF G + EL ++ + GE +T+ E+ E +
Sbjct: 883 FGLSPDKLQWAFDTLGMPSPAGGAVDRGELLDILQSKGEHMTEYELAEYL 734
>32088
Length = 1928
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 73 MARKMKDTDTEEELIEAFKVFDR---DGNGLISAAELRHVMTNLGEKLTDEEVDEMIREA 129
MA++ E++L E VFD D NG IS EL +G + E+ ++ +
Sbjct: 901 MAKRHTVALDEDQLTELRSVFDSIDDDNNGHISXGELDSAFRAVGLNIPGYELRTIMSKY 1080
Query: 130 DIDGDGHINYEEFVRMMMA 148
D GDG +N +EF R + A
Sbjct: 1081DASGDGRLNMDEF-RTLYA 1134
>18677
Length = 754
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%)
Frame = +2
Query: 48 ELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELR 107
+ + ++ +D + +G ++FPE R K+ E+ F FD++ +GL+ EL
Sbjct: 419 QCRSLLPMMDENRSGRLEFPE----AKRLWKEIKAYREV---FLQFDKNRSGLVDTYELG 577
Query: 108 HVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMM 147
++ + LG +T + ++R D I+ E+FV +++
Sbjct: 578 NMFSKLGFPVTRPVLTSIVRRYG-DRRNQISLEDFVVVIL 694
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN 61
A +L +E I ++E F FDK+ G + T ELG + LG T L ++ D
Sbjct: 482 AKRLWKE-IKAYREVFLQFDKNRSGLVDTYELGNMFSKLGFPVTRPVLTSIVRRY-GDRR 655
Query: 62 GTIDFPEFLSLMAR 75
I +F+ ++ R
Sbjct: 656 NQISLEDFVVVILR 697
>28617
Length = 348
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -2
Query: 124 EMIREADIDGDGHINYEEFVRMMM 147
EM+ EAD++GDG I+ EF+R+M+
Sbjct: 338 EMVEEADVNGDGQIDQSEFIRIML 267
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 49 LQDMINEVDADGNGTIDFPEFLSLM 73
++M+ E D +G+G ID EF+ +M
Sbjct: 344 WREMVEEADVNGDGQIDQSEFIRIM 270
>35350
Length = 339
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = +2
Query: 32 ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 76
EL +M LG T L+ MI EVD D + I F EFL L+ RK
Sbjct: 11 ELKYMMEKLGAPQTHLGLKKMIAEVDEDHDSKISFREFL-LIYRK 142
>27864
Length = 343
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 90 FKVFDRDGNGLISAAELRHVMTN-LGEKLTDEEVDEMIREADIDGDGHINYEEF 142
F+ D+D +G IS EL+ ++N E V MI D D G IN++EF
Sbjct: 31 FQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEF 192
>08380
Length = 1236
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Frame = -1
Query: 11 AEFKEAFSLFDKDGDGTITTKEL-GTVMRSLGQNPTEA--ELQDMINEVDADGNGTIDFP 67
++ K+ D D DG ++ EL V + ++ +EA E +++ +D D NG + +
Sbjct: 885 SKLKDIVYKVDSDKDGKLSVAELEAWVKDKMEEHFSEATQENEEIFKHLDPDNNGKVHWK 706
Query: 68 EFLS--LMARKMK----------------DTDTEEELIE-AFKVFDRDG----NGLISAA 104
E+ L+A+ K D D +EE+I F+ D DG N L
Sbjct: 705 EYYVHFLLAKGYKQDVASRHVVDYDZIQLDPDAKEEIIRYKFRWSDADGEPMDNELTREE 526
Query: 105 ELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEF 142
+ EK + V+ ++ D +GDG + EEF
Sbjct: 525 FMSFRHPEQSEKTLNNMVNGILGGIDTNGDGVVTEEEF 412
>03732
Length = 1114
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 86 LIEAFKVFDRDGNGLISAAELRHVMTN-LGEKLTDEEVDEMIREADIDGDGHINYEEF 142
L F+ D+D +G IS EL+ ++N E V MI D D G IN++EF
Sbjct: 1096 LAGIFQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEF 923
>22490
Length = 743
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = -1
Query: 122 VDEMIREADIDGDGHINYEEFVR 144
VDE++RE D+D DG+++Y EF++
Sbjct: 467 VDEILREDDLDKDGYVDYTEFMK 399
>28023
Length = 475
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -1
Query: 118 TDEEVDEMIREADIDGDGHINYEEFVRMMM 147
TD+EVDE+I D + DG +++ EF + M+
Sbjct: 475 TDQEVDEVIDYIDKNKDGKVDFSEFYKFMV 386
>07678
Length = 958
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 15/159 (9%)
Frame = +1
Query: 5 LTEEQIAEF-----KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD 59
+TE + +F +E F+ FDKD
Sbjct: 397 ITEFGLTQFEGDVIQEMFTCFDKD------------------------------------ 468
Query: 60 GNGTIDFPEFLSLMARKMKDTDTEEELIE-AFKVFDRDGNGLISAAELRHV--MTNLGEK 116
+GTIDF EFL + M + ++LI+ AF+ D+ G+G+++ +L+ V +T +
Sbjct: 469 ZSGTIDFDEFLVKLRPPM--SQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYNVTKHPKY 642
Query: 117 LTDEEVDEMIREADIDG-------DGHINYEEFVRMMMA 148
L E +E I +D DG I EEF +
Sbjct: 643 LNGEWTEERILRIFLDSFDSPNDKDGKITKEEFFNYYVG 759
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 86 LIEAFKVFDRDGNGLISAAELRHVMTNLG-EKLTDEEVDEMIREADIDGDGHINYEEFV 143
L FK+ D DGN + E + +T G + + + EM D D G I+++EF+
Sbjct: 325 LARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEMFTCFDKDZSGTIDFDEFL 501
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = +1
Query: 56 VDADGNGTIDFPEFLSLMARKMKDTDTEEELI-EAFKVFDRDGNGLIS----AAELRHVM 110
+D DGN ++DF EF + + T E ++I E F FD+D +G I +LR M
Sbjct: 346 MDDDGNRSLDFKEFKKGIT-EFGLTQFEGDVIQEMFTCFDKDZSGTIDFDEFLVKLRPPM 522
Query: 111 TNLGEKLTDEEVDEMIREADIDGDGHINYEE 141
+ + + L + ++ D GDG + E+
Sbjct: 523 SQMRKDL----IQRAFQKLDKTGDGVVTVED 603
>12671
Length = 807
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 31/60 (51%)
Frame = -2
Query: 90 FKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149
++ D+DG G++ +L + L E ++++ D DG+ ++Y F+R ++ +
Sbjct: 797 YRQLDKDGTGILLQHDLERGLLRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTVLGQ 618
>33397
Length = 1723
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 98 NGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRM 145
+GLIS ++ ++T L + E+ R DI+GDG ++ EEF R+
Sbjct: 132 HGLISFSDYIFLLTVLSTPPRNFEI--AFRMFDINGDGELDLEEFNRV 269
>13551
Length = 529
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 113 LGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149
+GE + + +V + +RE D + DG +++EEF + K
Sbjct: 55 MGEIVNEVKVTQWLREEDKNVDGCLDFEEFCALYKKK 165
>02929
Length = 1353
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 121 EVDEMIREADIDGDGHINYEEFVRMMM 147
V + R D DGDG + EEFV MM
Sbjct: 179 RVTDFFRRQDKDGDGFLTEEEFVNGMM 259
>35579
Length = 260
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 84 EELIEAFKVFDRDGNGLISAAELRH 108
++ + F +FD +GN I+ +E R+
Sbjct: 208 QDFVHTFHLFDENGNACITRSEFRY 134
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00535740__3718.m00063Mitochondrial_carrier_protein
(304 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13140 139 5e-68
36831 169 2e-42
03275 58 6e-09
00831 35 0.049
02324 32 0.47
07108 27 8.9
>13140
Length = 1844
Score = 139 bits (350), Expect(2) = 5e-68, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 85/116 (73%)
Frame = -2
Query: 175 PYTIVKFVAFEQIVELFYSKVFTKPRSEYSKGQQLSVTFLSGYLAGVFCALVSHPADTMV 234
PYT++KF FE+ VE Y V KPR+E +K +QL VTF +GY+AGVFCA+VSHPADT+V
Sbjct: 946 PYTMMKFACFERTVEALYKFVVPKPRAECTKSEQLIVTFAAGYIAGVFCAIVSHPADTIV 767
Query: 235 SKMNAPEFKGKGVSEIYAKIGFGGLWTGLVTRIIMIGTLTGLQWWIYDSFKTAVGL 290
SK+N + KG +I ++GF G+W GL RIIMIGTLT LQW+IYDS K A L
Sbjct: 766 SKLN--QAKGSNFVQIAKQLGFMGMWKGLFPRIIMIGTLTALQWFIYDSVKVAFRL 605
Score = 136 bits (343), Expect(2) = 5e-68, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 101/169 (59%), Gaps = 3/169 (1%)
Frame = -1
Query: 10 YYAKCMMGGIMACGLTHTAIVPLDVVKCKNQVTKGWSASLGQGLG-QLKAEGSLTLG--W 66
YYA C GG+++CGLTHTA+VPLD+VKC+ QV G ++ G L EG LG W
Sbjct: 1442 YYAYCAFGGLLSCGLTHTAVVPLDLVKCRIQVDPGKYGNIVNGFRVTLAEEGVRALGKGW 1263
Query: 67 FPTLIGYSLQGFGKFGFYEIFKDVYKGIVGEENAQKYRRIGWSVASGCAEVIADTLLCPF 126
PTL+GYS+QG GKFGFYE FK +Y G++GEEN +R + AS AE AD LCP
Sbjct: 1262 APTLVGYSMQGVGKFGFYEAFKILYGGMLGEENCYLWRTSLYLAASASAEFFADIALCPM 1083
Query: 127 ETIKVKMQISTAENAYPKSFLPAYNKFVGENGTKSLYNILPPLWGRQIP 175
E +KV++Q + + P + + E G Y L PLW RQIP
Sbjct: 1082 EAVKVRIQTQPGWSTTLREGAP---RILREEGLSGFYKGLVPLWARQIP 945
>36831
Length = 671
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 124/196 (63%)
Frame = -2
Query: 91 YKGIVGEENAQKYRRIGWSVASGCAEVIADTLLCPFETIKVKMQISTAENAYPKSFLPAY 150
Y +GEENA YR + AS AE + P+ + +++T ++ + +
Sbjct: 667 YGNAIGEENAFLYRTGLYLAASASAESLRTLRSHPWR----QPRLNTDDSRFRQDAARGL 500
Query: 151 NKFVGENGTKSLYNILPPLWGRQIPYTIVKFVAFEQIVELFYSKVFTKPRSEYSKGQQLS 210
K + + G + Y L PLW RQIPYT++KF FE+ +EL Y V KPR++ +KG+QL
Sbjct: 499 PKMMAQEGVSAFYKGLVPLWMRQIPYTMMKFACFERTLELLYQYVVPKPRADCTKGEQLI 320
Query: 211 VTFLSGYLAGVFCALVSHPADTMVSKMNAPEFKGKGVSEIYAKIGFGGLWTGLVTRIIMI 270
VTF +GY+AGVFCA+VSHPADT+VSK+N + KG ++ ++G+ GLW GLV RI+MI
Sbjct: 319 VTFAAGYIAGVFCAIVSHPADTVVSKLN--QAKGASALDVAKQLGWSGLWGGLVPRIVMI 146
Query: 271 GTLTGLQWWIYDSFKT 286
GTLT QW+IYD+ K
Sbjct: 145 GTLTAAQWFIYDAVKV 98
>03275
Length = 3821
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
Frame = +1
Query: 115 AEVIADTLLCPFETIKVKMQISTAENAYPKSFLPAYNKFVGENGTKSLYNILPPLWGRQI 174
A +A L+ P IK +++ + + + A G + LY+ L P R +
Sbjct: 3184 ARTMAACLILPITVIKTRLESGSFQY---QGMANALTLIYKREGIRGLYSGLSPTLLRDV 3354
Query: 175 PYTIVKFVAFEQIVELFYSKV--FTKPRSEYSKGQQLSVTFLSGYLAGVFCALVSHPADT 232
P F + +FYSK+ + +P S + G + V F + + G + V+ PAD
Sbjct: 3355 P--------FSGLYLMFYSKLKMYNQP-SMFGCGFEPLVDFCNAVIGGALASFVTQPADV 3507
Query: 233 MVSKMNAPEFKGKGVSEI----YAKIGFGGLWTGLVTRIIMIGTLTGLQWWIYDSFKTAV 288
+ + M + + + ++ Y K G G W G+V R + T+T L W +++
Sbjct: 3508 IKTNMQLYPRQHRHLKQVIVYVYQKRGMYGFWRGMVPRTLRRTTMTALAWTVFEEITRRC 3687
Query: 289 GLQ 291
L+
Sbjct: 3688 SLK 3696
>00831
Length = 2468
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = -2
Query: 112 SGCAEVIADTLLCPFETIKVKMQISTAENAYPKSFLPAYNKFVGENGTKSLYNILPPLWG 171
S A IA L P + +K +M ++ A Y A + + +NG + P +
Sbjct: 2305 STMAGTIATFLTMPLDVMKTRM-MNAAPGTYTSLMHCAMD--IAKNGPMGFFKGFIPAFV 2135
Query: 172 RQIPYTIVKFVAFEQIVELF 191
R P+T++ FV FEQI + F
Sbjct: 2134 RLGPHTVLTFVFFEQIRQNF 2075
>02324
Length = 2058
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 50 GQGLGQLKAEGSLTLGWFPTLIGYSLQGFGKFGFYEIFKDVYKGIVGEE 98
GQG G + SL L + T YS G GFY ++++V+K + E+
Sbjct: 323 GQGKGDKYEDNSLNLFQYFTSSCYSGFGDDDKGFYSVYREVFKTVSSED 469
>07108
Length = 912
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 18 GIMACGLTHTAIVPLDVVKCKNQVTKGWSASLG 50
I+AC + HT V L + CK V K +S G
Sbjct: 837 AIIACSVRHTVCVSLCLYLCKKYVNKVFSVVYG 739
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00216010__3701.m0001414-3-3_protein
(244 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12344 249 8e-67
33715 155 1e-38
13465 145 2e-35
17028 116 1e-26
15092 69 2e-12
27988 36 2e-06
>12344
Length = 1658
Score = 249 bits (636), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 123/239 (51%), Positives = 168/239 (70%)
Frame = +2
Query: 5 REENIYMGKISEQTERFEDMLEYMKKVVQTGQELSVEERNLLSVAYKNTVGXXXXXXXXX 64
RE+ +Y K + ER+++M+++MK V EL+VEERNLLSVAYKN +G
Sbjct: 65 REDQVYQAKQLNRAERYDEMVKFMKIVACMDVELTVEERNLLSVAYKNVIGARRASWRIV 244
Query: 65 XXXQQKEESKGSKHLDLLTNYKKKIETELNLYCEDILRLLNDYLIKNATNAEAQVFFLKM 124
+QKE+ K + Y+ KIE EL CED+L +L +LI NA E++VF+ KM
Sbjct: 245 SSLEQKEDKCEDKKA-INKEYRMKIEKELKDICEDVLDILEKHLIVNANTGESKVFYYKM 421
Query: 125 KGDYYRYIAEYAQGDDHKKAADGALDSYNKASEIANSELSTTHPIRLGLALNFSVFHYEV 184
KGDY+RY+AE+A G+D K+AA+ +L +Y AS+IA EL+ THPIRLGLALNFSVF+YE+
Sbjct: 422 KGDYHRYLAEFAVGNDRKEAAENSLVAYKAASDIAMIELAPTHPIRLGLALNFSVFYYEI 601
Query: 185 LNDPSKACTLAKTAFDEAIGDIERIQEDQYKDATTIMQLIRDNLTLWTSEFQDDAEEQQ 243
LN P +AC LAK AFD+AI +++ + E+ YKD+T IMQL+RDNLTLWTS+ Q + E+Q
Sbjct: 602 LNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGEGGEEQ 778
>33715
Length = 434
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 95/120 (79%)
Frame = -1
Query: 122 LKMKGDYYRYIAEYAQGDDHKKAADGALDSYNKASEIANSELSTTHPIRLGLALNFSVFH 181
LKMKGDYYRY++E +QG+ K+ ++++Y +A+++A LS+THPIRLGLALNFSVFH
Sbjct: 374 LKMKGDYYRYLSEVSQGEQRKENVGKSMEAYKEATDMAKERLSSTHPIRLGLALNFSVFH 195
Query: 182 YEVLNDPSKACTLAKTAFDEAIGDIERIQEDQYKDATTIMQLIRDNLTLWTSEFQDDAEE 241
YE+ N P +AC LAK AFDEAI ++++ E+ YKD+T IMQL+RDNLTLWTS+ Q + E
Sbjct: 194 YEIKNCPDEACRLAKIAFDEAIQCLDQLNEESYKDSTLIMQLLRDNLTLWTSDSQGEGTE 15
>13465
Length = 596
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Frame = +2
Query: 5 REENIYMGKISEQTERFEDMLEYMKKVVQTGQELSVEERNLLSVAYKNTVGXXXXXXXXX 64
R++ +Y K++EQ ER+++M+E MKKV G +L+VEERNLLSVAYKN +G
Sbjct: 119 RDDFVYQAKLAEQAERYDEMVEAMKKVASMGNDLTVEERNLLSVAYKNVIGARRASWRIV 298
Query: 65 XXXQQKEESKGSKHLDLLT-NYKKKIETELNLYCEDILRLLNDYLIKNATNAEAQVFFLK 123
+QK+ K +T Y+++IETEL CED+L++++D+LI + T E++VF+ K
Sbjct: 299 SSVEQKDLDKPDPDKGKMTKGYRQQIETELKQICEDVLKIIDDHLIPSTTQGESKVFYYK 478
Query: 124 MKGDYYRYIAEYAQGDDHKKAADGALDSYNKA 155
MKGDYYRY+AE+A GD K+AA+ +L +Y +
Sbjct: 479 MKGDYYRYLAEFATGDPRKEAAESSLVAYKRP 574
>17028
Length = 1078
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Frame = +1
Query: 142 KKAADGALDSYNKASEIANSELSTTHPIRLGLALNFSVFHYEVLNDPSKACTLAKTAFDE 201
++A A ++YNKA E+A ++ THP RLGLALN+SVF+YE+LN KAC LAKTAFDE
Sbjct: 28 QEAVTKAQEAYNKAMEVAKQSMAPTHPNRLGLALNYSVFYYEILNSQDKACDLAKTAFDE 207
Query: 202 AIGDIERIQE-DQYKDATTIMQLIRDNLTLWTSE 234
AI ++++ E D KD+T IMQL+RDNLTLWTS+
Sbjct: 208 AIQEMDQCGERDDCKDSTLIMQLLRDNLTLWTSD 309
>15092
Length = 692
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Frame = +3
Query: 4 SREENIYMGKISEQTERFEDMLEYMKKVVQTG--------QELSVEERNLLSVAYKNTVG 55
+E ++ KI+EQ ER++DM E M K V G L EERNLLSVAYKN VG
Sbjct: 228 PKERQVHAAKIAEQAERYDDMAESMHKCVVEGYSANGDKSSTLDNEERNLLSVAYKNVVG 407
Query: 56 XXXXXXXXXXXXQQKEESKGSKHLDLLTNYKKKIETELNLYCEDILRLLNDY 107
+QK E+ K L++ Y++K+E EL C +L ++ Y
Sbjct: 408 ARRSAWRVISSIEQKTEN-NDKKLEMAKKYREKVEKELKEICTQVLVRIHHY 560
>27988
Length = 448
Score = 36.2 bits (82), Expect(2) = 2e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 45 LLSVAYKNTVGXXXXXXXXXXXXQQKEESKGSKHLDLLTNYKKKIETELNLYCEDILRL 103
L SVAYKN VG +QK E++ K + ++K +E EL+ C ++L+L
Sbjct: 276 LFSVAYKNVVGARRSSWRVICMIEQKAETQPRK--EKARAFRKDVEKELDATCNEVLKL 446
Score = 32.3 bits (72), Expect(2) = 2e-06, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 9 IYMGKISEQTERFEDMLEYMKKVVQTGQELSVEER 43
I K++EQ ER++DM + MKKV + + L E R
Sbjct: 167 ISFAKLAEQAERYDDMAKAMKKVTENDKTLMQESR 271
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01289110__310.m00045ribosomal_protein_L15
(204 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00178 249 8e-67
24339 64 5e-11
06347 27 6.3
04377 27 7.2
19286 26 9.1
>00178
Length = 944
Score = 249 bits (635), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 123/205 (60%), Positives = 150/205 (73%), Gaps = 1/205 (0%)
Frame = +2
Query: 1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYA 60
MGAYKY++ELWRKKQ D+M F+LR+R W++RQL +H+ASR +RPDKAR+LGY+ K GY
Sbjct: 305 MGAYKYMQELWRKKQGDVMRFLLRVRCWQFRQLSSVHRASRPTRPDKARRLGYRAKQGYV 484
Query: 61 IWXXXXXXXXXXXPVSKGIVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYW 120
I+ PV KG YGKP + G+NQLKF R+LRS AEERVG+R LRVL+SYW
Sbjct: 485 IYRVRVRRGGRKRPVPKGCTYGKPVTHGVNQLKFQRSLRSVAEERVGRRCGGLRVLSSYW 664
Query: 121 VGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKGHR 180
V +D +YKF+EVIL DP H AIR DP+ NWIC+ HKHRE+RGLTSAGR RGL KGH
Sbjct: 665 VCEDSSYKFFEVILVDPFHKAIRRDPKANWICKPVHKHREMRGLTSAGRSSRGL-GKGHL 841
Query: 181 -AKSLRTSRKGNWRARQMLKLRRYR 204
K+ SR+ NW+ R L LRR R
Sbjct: 842 FNKTSGGSRRANWKRRNTLSLRRKR 916
>24339
Length = 452
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 35/40 (87%)
Frame = +2
Query: 1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKAS 40
MGAYKY++ELWRKKQ D+M F+LR+R W++RQL +H+AS
Sbjct: 329 MGAYKYMQELWRKKQGDVMRFLLRVRCWQFRQLSSVHRAS 448
>06347
Length = 912
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 9 ELWRKKQSDLMSFILRLRTWEYRQLPVIHK 38
E+W K D FILRL T Y+ L + K
Sbjct: 728 EIWNKGIDDTSVFILRLETLSYKPLLLFVK 817
>04377
Length = 2112
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 9 ELWRKKQSDLMSFILRLRTWEYRQL 33
E+W K D FILRL T Y+ L
Sbjct: 1224 EIWNKGIDDTSVFILRLETLSYKPL 1298
>19286
Length = 712
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 79 IVYGKPSSVGINQLKFARN 97
IVYG+ S+ I L FARN
Sbjct: 624 IVYGRKKSISIQNLAFARN 568
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00502240__3716.m00093Carbamoyl-phosphate_synthase_L_chain,
_ATP_binding_domain_containing_protein
(673 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
15060 246 2e-65
07274 113 3e-25
30553 44 3e-04
34243 42 9e-04
17679 28 8.3
>15060
Length = 935
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 189/296 (63%), Gaps = 4/296 (1%)
Frame = -2
Query: 82 FGFLSENADFADECTTNKIIFVGPPTDAIRKMGSKSESKIIMTNAKVPVVPGYHGENQDK 141
+GFLSE DFA C I FVGP + + +MG K E++ NA V VVPG G
Sbjct: 934 YGFLSERPDFAQACVDAGIHFVGPSPEVVHRMGDKVEARQSAINAGVQVVPGTPGPVASA 755
Query: 142 DYLFEQARSIGFPVLIKAVLGGGGKGMRIVTKESEFFEALESAKRESLKAFKDDRVLIEK 201
+ E + G PV+ KA GGGG+GMR+V E E A E+L AF D + IEK
Sbjct: 754 EEAMEFCKEHGLPVIFKAAFGGGGRGMRVVRNLEEVEENFNRAFSEALAAFGDGSLFIEK 575
Query: 202 YIQKPRHIEVQVFGDHHGNYVHLFERDCSIQRRHQKVIEEAPS-NINWDLRNSIGSSAVD 260
+I++PRHIEVQ+ GD GN +HL+ERDCS+QRRHQKV+E AP+ ++ ++R + + AV
Sbjct: 574 FIERPRHIEVQLLGDRTGNVIHLYERDCSVQRRHQKVVEIAPAPQLDSEVRTKMANDAVR 395
Query: 261 AAKAVGYYNAGTVEFIFDLISNQYYFMEMNTRLQVEHPISEMITGEDFVEWQLRVAQGEK 320
AK VGY NAGTVEF+ D + QYYF+E+N RLQVEH ++E +TG D V+ Q+R+A+G+
Sbjct: 394 LAKFVGYENAGTVEFLLDK-NGQYYFIEVNARLQVEHTVTEQVTGVDLVQAQIRIAEGKT 218
Query: 321 LPK---TQDQLKIRGHSIEARIYSEDPYNNFLPGNGNLEFFREPKEEPGVIRLESG 373
L TQD++++ G +I+ R+ +EDP NF P G +E FR E IRL+S
Sbjct: 217 LSDLDLTQDKIQLNGCAIQCRMTTEDPARNFQPDTGRIEVFR--SGEGMGIRLDSA 56
>07274
Length = 1377
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = +1
Query: 313 LRVAQGEKLPKTQDQLKIRGHSIEARIYSEDPYNNF-LPGNGNLEFFREPKEEPGVIRLE 371
LRVA+G +L Q + + G S E R+Y+EDP+ NF +P G L + EP P V R +
Sbjct: 10 LRVAKGHELLHQQSDIPVDGWSFECRVYAEDPFKNFGMPSIGRLSRYIEPAHIPNV-RCD 186
Query: 372 SGVREGDDISIFYDPMIAKLVVWGKDRSAAIGTLNKALNDYKVVGLPTNLRFLRTCSQHP 431
SG++EG +ISI+YDPMI KLV +G+DR +AI T+ AL+ Y + G+ N+ LR
Sbjct: 187 SGIQEGSEISIYYDPMICKLVTFGEDRQSAINTMITALDSYVIKGVTHNIPLLRDIMTEG 366
Query: 432 DFLKGEYDTGFI 443
F++G+ +T ++
Sbjct: 367 RFVQGDINTNYL 402
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Frame = +3
Query: 605 NIIKAPMPCTLVKVNVKQGDKVSAGQPIVILEAMKMEHXXXXXXXXXXXXXXFRDGEFVQ 664
+++ APMP L V+V+ GD+V+ GQ + ILEAMKM++ F+ GE V
Sbjct: 867 SVVLAPMPGMLKSVDVQVGDQVAEGQEVCILEAMKMQNSLVAAKVSTVKKVNFKTGETVN 1046
Query: 665 AGKLIVELE 673
G +IVE E
Sbjct: 1047EGDVIVEFE 1073
>30553
Length = 615
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 607 IKAPMPCTLVKVNVKQGDKVSAGQPIVILEAMKME 641
+ APMP ++ + VK+GD+V GQ +++L AMKME
Sbjct: 407 VGAPMPGEVIDIKVKEGDQVEKGQAVLVLSAMKME 511
>34243
Length = 503
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = -1
Query: 595 SSTSNDTQDPNIIKAPMPCTLVKVNVKQGDKVSAGQPIVILEAMKMEHXXXXXXXXXXXX 654
SS DP APMP + +V V +G V G+P+V++ AMKME+
Sbjct: 455 SSGGGSLDDP---VAPMPGVIERVLVSEGATVEQGEPLVVMIAMKMEYIIRAPRAGVVEK 285
Query: 655 XXFRDGEFVQAGKLIVEL 672
F G+ V G +V
Sbjct: 284 VMFAAGQTVAKGTALVHF 231
>17679
Length = 509
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 492 KSENFILKASAAFINTELKYEVNVEYPGNGLMNITIKNPSKHTVI 536
+S+NF +AS+ N E +V VE PG N+ + S T++
Sbjct: 48 ESKNFTCEASSDLGNIERIVQVLVEAPGTAPRNVRARAASSTTIV 182
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00502240__3716.m00093Carbamoyl-phosphate_synthase_L_chain,
_ATP_binding_domain_containing_protein
(673 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
15060 246 2e-65
07274 113 3e-25
30553 44 3e-04
34243 42 9e-04
17679 28 8.3
>15060
Length = 935
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 189/296 (63%), Gaps = 4/296 (1%)
Frame = -2
Query: 82 FGFLSENADFADECTTNKIIFVGPPTDAIRKMGSKSESKIIMTNAKVPVVPGYHGENQDK 141
+GFLSE DFA C I FVGP + + +MG K E++ NA V VVPG G
Sbjct: 934 YGFLSERPDFAQACVDAGIHFVGPSPEVVHRMGDKVEARQSAINAGVQVVPGTPGPVASA 755
Query: 142 DYLFEQARSIGFPVLIKAVLGGGGKGMRIVTKESEFFEALESAKRESLKAFKDDRVLIEK 201
+ E + G PV+ KA GGGG+GMR+V E E A E+L AF D + IEK
Sbjct: 754 EEAMEFCKEHGLPVIFKAAFGGGGRGMRVVRNLEEVEENFNRAFSEALAAFGDGSLFIEK 575
Query: 202 YIQKPRHIEVQVFGDHHGNYVHLFERDCSIQRRHQKVIEEAPS-NINWDLRNSIGSSAVD 260
+I++PRHIEVQ+ GD GN +HL+ERDCS+QRRHQKV+E AP+ ++ ++R + + AV
Sbjct: 574 FIERPRHIEVQLLGDRTGNVIHLYERDCSVQRRHQKVVEIAPAPQLDSEVRTKMANDAVR 395
Query: 261 AAKAVGYYNAGTVEFIFDLISNQYYFMEMNTRLQVEHPISEMITGEDFVEWQLRVAQGEK 320
AK VGY NAGTVEF+ D + QYYF+E+N RLQVEH ++E +TG D V+ Q+R+A+G+
Sbjct: 394 LAKFVGYENAGTVEFLLDK-NGQYYFIEVNARLQVEHTVTEQVTGVDLVQAQIRIAEGKT 218
Query: 321 LPK---TQDQLKIRGHSIEARIYSEDPYNNFLPGNGNLEFFREPKEEPGVIRLESG 373
L TQD++++ G +I+ R+ +EDP NF P G +E FR E IRL+S
Sbjct: 217 LSDLDLTQDKIQLNGCAIQCRMTTEDPARNFQPDTGRIEVFR--SGEGMGIRLDSA 56
>07274
Length = 1377
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = +1
Query: 313 LRVAQGEKLPKTQDQLKIRGHSIEARIYSEDPYNNF-LPGNGNLEFFREPKEEPGVIRLE 371
LRVA+G +L Q + + G S E R+Y+EDP+ NF +P G L + EP P V R +
Sbjct: 10 LRVAKGHELLHQQSDIPVDGWSFECRVYAEDPFKNFGMPSIGRLSRYIEPAHIPNV-RCD 186
Query: 372 SGVREGDDISIFYDPMIAKLVVWGKDRSAAIGTLNKALNDYKVVGLPTNLRFLRTCSQHP 431
SG++EG +ISI+YDPMI KLV +G+DR +AI T+ AL+ Y + G+ N+ LR
Sbjct: 187 SGIQEGSEISIYYDPMICKLVTFGEDRQSAINTMITALDSYVIKGVTHNIPLLRDIMTEG 366
Query: 432 DFLKGEYDTGFI 443
F++G+ +T ++
Sbjct: 367 RFVQGDINTNYL 402
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Frame = +3
Query: 605 NIIKAPMPCTLVKVNVKQGDKVSAGQPIVILEAMKMEHXXXXXXXXXXXXXXFRDGEFVQ 664
+++ APMP L V+V+ GD+V+ GQ + ILEAMKM++ F+ GE V
Sbjct: 867 SVVLAPMPGMLKSVDVQVGDQVAEGQEVCILEAMKMQNSLVAAKVSTVKKVNFKTGETVN 1046
Query: 665 AGKLIVELE 673
G +IVE E
Sbjct: 1047EGDVIVEFE 1073
>30553
Length = 615
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 607 IKAPMPCTLVKVNVKQGDKVSAGQPIVILEAMKME 641
+ APMP ++ + VK+GD+V GQ +++L AMKME
Sbjct: 407 VGAPMPGEVIDIKVKEGDQVEKGQAVLVLSAMKME 511
>34243
Length = 503
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = -1
Query: 595 SSTSNDTQDPNIIKAPMPCTLVKVNVKQGDKVSAGQPIVILEAMKMEHXXXXXXXXXXXX 654
SS DP APMP + +V V +G V G+P+V++ AMKME+
Sbjct: 455 SSGGGSLDDP---VAPMPGVIERVLVSEGATVEQGEPLVVMIAMKMEYIIRAPRAGVVEK 285
Query: 655 XXFRDGEFVQAGKLIVEL 672
F G+ V G +V
Sbjct: 284 VMFAAGQTVAKGTALVHF 231
>17679
Length = 509
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 492 KSENFILKASAAFINTELKYEVNVEYPGNGLMNITIKNPSKHTVI 536
+S+NF +AS+ N E +V VE PG N+ + S T++
Sbjct: 48 ESKNFTCEASSDLGNIERIVQVLVEAPGTAPRNVRARAASSTTIV 182
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00433850__3831.m01625enoyl-
CoA_hydratase/isomerase_family_protein
(369 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
36681 243 1e-64
13881 35 0.052
29446 31 0.75
>36681
Length = 1210
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 214/377 (56%), Gaps = 10/377 (2%)
Frame = +3
Query: 3 RITQLNRQIVSNFSSSTDSVLFTQDKFKAKVVLNKPKALNALDLAMIRQIQGRIVPW-TQ 61
R+ QL+ Q +TD VLF K +VLN+PKALNAL+L MIR I +++ W T
Sbjct: 24 RMAQLSSQ-------ATDEVLFNAVGDKRVIVLNRPKALNALNLNMIRHIYPKMLEWETD 182
Query: 62 EGIKAVWINGAGGKAFCAGGDIKSLYDAKKSGKPEELPILDTFFREEFTLDYELANMKPT 121
I V I GAG KAFCAGGDI+++ ++ K G + FF+EE+ L+Y++ + +
Sbjct: 183 PNISCVVIKGAGDKAFCAGGDIRAVTESGKVGGD----LGKDFFKEEYMLNYKIGSYRKP 350
Query: 122 QIAXXXXXXXXXXXXXXXHAPIKIATENSVFAMPEAKIAFFTDVGGGYFLSRLRSNIGLY 181
IA H ++ATE +VFAMPE I F DVGGG+FL L+ +G Y
Sbjct: 351 YIAVIDGITMGGGVGLSVHGKYRVATEKTVFAMPETAIGLFPDVGGGHFLPWLQGRLGTY 530
Query: 182 LGLTGARLKGKELVATGVANYYVPRNKLDALEEEVKSSLNQ--NSTPNDIKNIVAKYAEQ 239
L LTG RLKG+++ GVA ++V KL LE+ SL Q ++ ++ ++ Y Q
Sbjct: 531 LALTGFRLKGRDVFHAGVATHFVQAEKLAELEQ----SLMQLPEASHLQVEKVLDSYHSQ 698
Query: 240 VPLT-------FSNEEEIKQLFNGETFQSIYQNIQSSTSEFGQSVAKLINQQNAISLRII 292
P+ + + I +F+ ++ + I Q++QS SE+ Q IN+ + SL++
Sbjct: 699 NPVDKDKPFVLAPHLDTINSVFDKDSVEDIVQHLQSLPSEWAQLQLNTINKMSPTSLKVT 878
Query: 293 FEQIKRGKKLNLKENFVSDFRLTQRFTEDNDFFEGIRTVLIDRSDTPNWTYKSPLDVPQT 352
Q++ G+ L+L + ++RL+QR +D+DF+EG+R VL+D+ +P W S V
Sbjct: 879 LRQLRMGETLSLADILQVEYRLSQRCLKDHDFYEGVRAVLVDKDQSPRWNPDSLEGVTTE 1058
Query: 353 LIDQYFAPLPYEKELKI 369
+D YF+PLP ++EL++
Sbjct: 1059KLDWYFSPLPPDQELQL 1109
>13881
Length = 1594
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 1/148 (0%)
Frame = +3
Query: 27 DKFKAKVV-LNKPKALNALDLAMIRQIQGRIVPWTQEGIKAVWINGAGGKAFCAGGDIKS 85
DK VV +N+P+ NAL A++ + + Q+ + +AF AG D+
Sbjct: 129 DKHNVAVVRMNRPRTFNALSDALMADVTAALQQLDQDNSVGCIVLTGSDRAFAAGADVPD 308
Query: 86 LYDAKKSGKPEELPILDTFFREEFTLDYELANMKPTQIAXXXXXXXXXXXXXXXHAPIKI 145
L+ KK+ + +++ F +F Y ++ + IA I
Sbjct: 309 LH--KKTFE----DVIEQDFPAQF---YSISKCRKPIIAAVNGYALGGGXEIAMMCDIVY 461
Query: 146 ATENSVFAMPEAKIAFFTDVGGGYFLSR 173
A + ++FA PE + GG L R
Sbjct: 462 AGDKALFAQPEVTLGTLPGAGGTQRLIR 545
>29446
Length = 1445
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +3
Query: 297 KRGKKLNLKENF----VSDFRLTQRFTEDNDFFEGIRTVLIDRSDTPNWTYKSPLDVPQT 352
K+ K +N + NF + + LT +F ED+ EGIR V ID +D + K L + T
Sbjct: 1128 KKFKHVNKRPNFRTQKLENVTLTLKFLEDD---EGIRIVNIDSTDIVDKKLKLILGLIWT 1298
Query: 353 LIDQYFAPLP 362
LI Y +P
Sbjct: 1299 LILHYSISMP 1328
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01004930__3757.m00299metallopeptidase_family_M24_containing_
protein
(370 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05442 243 1e-64
15458 52 5e-09
20546 33 0.23
>05442
Length = 1171
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 180/295 (61%), Gaps = 3/295 (1%)
Frame = +1
Query: 69 EKGPAFPVCISVNEIAGHYSPLVSDSEDKEKEFAIIKEGDVVKIDLGAHIDGFIALAAHT 128
EKG AFP C+S+N H+SPL SD + +K+GD+VKIDLGAH+DG+I +AAHT
Sbjct: 121 EKGIAFPTCVSINNCICHFSPLKSDPD------ITLKDGDMVKIDLGAHVDGYIGVAAHT 282
Query: 129 VVAKADKAAPVEGRKXXXXXXXXXXXXXXXRTVKPGSKNTETTEVISKTIESFKCNAIEG 188
+V A K V GRK R VKPG++N + T+ I K E++ C +EG
Sbjct: 283 LVVGASKDKKVSGRKADVMTAAHMAVEAALRMVKPGNENDQVTDCIQKVAEAYNCKPVEG 462
Query: 189 VLSHDLNKYLIDGNNVILNKETFDQRVEEH---EYAVHEVFAIDIFVSTGEGKTKETELR 245
+LSH L K +IDG+ + + QR ++H E+ VHEV+AID+ +STGEGK +E + R
Sbjct: 463 MLSHQLLKDVIDGDKAFIQNPSEAQR-KDHDKCEFEVHEVYAIDVIISTGEGKGRELDTR 639
Query: 246 TTVYKRALERAYNLKTKHGRAFFHTLCEKFPALCFSTRNFEDEISTKLGVSECLKHDLLN 305
TTVYK+ + Y LK K R F +KF + FS R EDE K+GV EC+KH L+
Sbjct: 640 TTVYKKR-DMVYQLKMKASRQFLSETDKKFGLMPFSLRLLEDEKKAKMGVVECVKHGLMQ 816
Query: 306 GYPVLTEKKGEYVAHFKYTVAIMPKQTLILSGLPLDLAGFKPENTITDEKIKALL 360
+ VL +++GE VA FK TV +MP L ++GLP ++ + + DE++KALL
Sbjct: 817 PFGVLFDREGEVVAQFKTTVILMPNGPLKITGLPFQSELYQSDLKVEDEEVKALL 981
>15458
Length = 965
Score = 40.8 bits (94), Expect(2) = 5e-09, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = -1
Query: 315 GEYVAHFKYTVAIMPKQTLILSGLPLDLAGFKPENTITDEKIKALL 360
GE VA FK TV +MP L ++GLP ++ + + DE++KALL
Sbjct: 230 GEVVAQFKTTVILMPNGPLKITGLPFQSELYQSDLKVEDEEVKALL 93
Score = 37.0 bits (84), Expect(2) = 5e-09, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = -3
Query: 180 SFKCNAIEGVLSHDLNKYLIDGNNV-ILNKETFDQRVEEHEYAVHEVFAIDIFVSTGEGK 238
+ C +EG+LSH L K +IDG+ I N +R+ + F +S E +
Sbjct: 543 ALNCKPVEGMLSHQLLKDVIDGDKAFIQNPSEAQRRIMTNVNLKFTKFTPLTLLSVLERE 364
Query: 239 TKETELRTTVYKRALERAYNLKTKHGRAFFHTLCEKFPALCFSTR 283
E + + + Y LK K R F +KF + FS R
Sbjct: 363 RVENWTQELQCTKKRDMVYQLKMKASRQFLSETDKKFGLMPFSLR 229
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Frame = -2
Query: 160 TVKPGSKNTETTEVISKTIESFKCNAIEG------VLSHDLNKYLIDGNNVILNKETFDQ 213
++KP S+ E FK G V D + + ++ K+ D+
Sbjct: 604 SLKPDSRKYEVLSAPRPQCRRFKL*TCRGHAVPPAVEGRDRRRQSLHSKSIRGTKKDHDK 425
Query: 214 RVEEHEYAVHEVFAIDIFVSTGEGKTKETELRTTVYKR 251
E+ VHEV+AID+ +STGEGK +E + RTTVYK+
Sbjct: 424 ----CEFEVHEVYAIDVIISTGEGKGRELDTRTTVYKK 323
>20546
Length = 646
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -2
Query: 299 LKHDLLNGYPVLTEKKGEYVAHFKYTVAIMPKQTLILSGLPLDLAGFKPENTITDE---K 355
KH ++G P + G HF M KQ S L KP+N++ E +
Sbjct: 621 FKHGCVSGNPSQSNGNGNSSMHFDTVSLQMSKQGRAFSSSALQKGKAKPQNSVGSEVQPE 442
Query: 356 IKALLDTPIL 365
++ LL P+L
Sbjct: 441 VRLLL--PML 418
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01113100__240.m00039hypothetical_protein
(343 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00561 216 6e-64
17598 231 2e-61
12806 213 8e-56
30256 72 4e-13
13335 71 5e-13
03156 65 4e-11
03387 65 5e-11
01327 62 2e-10
07665 60 2e-09
12574 59 2e-09
02147 57 9e-09
19949 56 2e-08
27465 56 2e-08
02090 55 3e-08
13278 54 1e-07
17602 54 1e-07
03395 54 1e-07
01598 52 4e-07
15337 51 8e-07
18981 49 2e-06
12960 49 3e-06
17266 48 5e-06
21105 48 5e-06
01768 47 9e-06
19863 47 1e-05
26107 46 3e-05
37180 45 6e-05
35607 44 8e-05
26939 44 1e-04
10264 43 2e-04
02960 43 2e-04
19498 42 4e-04
14105 42 5e-04
11493 40 0.001
31054 40 0.001
20662 39 0.002
10162 39 0.002
15745 39 0.003
12140 38 0.005
01462 38 0.007
27270 38 0.007
15118 37 0.009
15972 37 0.012
34005 37 0.016
22113 36 0.018
31384 36 0.022
14500 36 0.028
33180 35 0.041
16105 35 0.065
15780 34 0.066
14555 34 0.086
29912 34 0.11
05393 33 0.15
19140 32 0.27
31474 32 0.28
16199 32 0.32
06576 32 0.43
31864 31 0.56
12841 31 0.56
21763 31 0.73
34511 30 1.3
04524 30 1.3
13509 30 1.7
01249 30 1.9
00764 30 1.9
27681 29 2.8
21921 29 2.9
04395 29 3.2
00825 28 3.7
07465 28 4.7
31118 28 5.1
12362 28 5.9
35695 28 7.0
07781 27 8.0
08355 27 9.2
>00561
Length = 1003
Score = 216 bits (549), Expect(2) = 6e-64, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 152/251 (60%), Gaps = 1/251 (0%)
Frame = -3
Query: 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96
+D +IS SRDKT+++WKL +E Y G P K L GH+HF+SD+ LS + +A+S SW
Sbjct: 980 KDPDTIISASRDKTLIVWKLTRDEDTNY-GYPQKRLYGHSHFISDVVLSSDGNYALSGSW 804
Query: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
D+TLRLWDL G T +RF GH +V SVAFS DNRQI+S ++ IKLWN L ECKF+
Sbjct: 803 DQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLAECKFTIQ 624
Query: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN 215
E + H+DWVSCVR+SP + P S GWD +KVWN N +++ H
Sbjct: 623 E-DGHTDWVSCVRFSPNHSN--------PIIVSCGWDRTVKVWNLANCKLKNNHHGHNGY 471
Query: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTD 275
+N +++SP+G +GGKD K L+WD LN + IN + F+P W+ V
Sbjct: 470 LNTVTVSPDGSLCTSGGKDSKALLWD-LNDGKNLYTLEHNDIINALCFSPNRYWLCVAYG 294
Query: 276 QGVKIFNLMTQ 286
+KI++L +
Sbjct: 293 PSIKIWDLACK 261
Score = 46.2 bits (108), Expect(2) = 6e-64, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -2
Query: 295 EAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSAN 343
E P + K + PQC SLAW+ G+ LFAG++D IR + SA+
Sbjct: 249 ELRPEVVSPTSKAEQPQCLSLAWSTDGQTLFAGYSDNTIRVWQVSVSAH 103
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Frame = -3
Query: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE-EEQNGYFGIPHKALTGHN 76
+GH+DWV+ + FS N +P+++S D+TV +W L + +N + GHN
Sbjct: 620 DGHTDWVSCV--RFS--PNHSNPIIVSCGWDRTVKVWNLANCKLKNNHH--------GHN 477
Query: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
+++ + +S + S D LWDL G H + ++ FSP NR L
Sbjct: 476 GYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTL-EHNDIINALCFSP-NRYWLCV 303
Query: 137 GAEREIKLWNI 147
IK+W++
Sbjct: 302 AYGPSIKIWDL 270
>17598
Length = 875
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 179/292 (61%), Gaps = 4/292 (1%)
Frame = +1
Query: 42 LISGSRDKTVMIWKLY---EEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98
LI G RDK +++W L + +++ +G P + L GH+HFVSD++LS ++ + +SSSWD
Sbjct: 10 LIXGGRDKLLIVWDLVPRKDGDEDETWGGPRRTLQGHSHFVSDVSLSADSRYVLSSSWDA 189
Query: 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK 158
TLRLWD++ G T +RF+ H + +VAFSPDNRQI S G ++ +K+WN +GECKF + +
Sbjct: 190 TLRLWDIKKGNTTRRFISHTRDALAVAFSPDNRQIASGGRDKALKIWNTVGECKF-TVDA 366
Query: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW-NTNFQIRYTFKAHESNVN 217
+H DWV+CV++ KS P S D +KVW N +++TF H++ +N
Sbjct: 367 NSHQDWVTCVKFHQDAKS--------PLVVSASMDKTIKVWDNQTMTLKHTFVGHKTQIN 522
Query: 218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG 277
+ ++ Y+A+G KD ++ W+I N T+ + D +N + F+P W+ VGT +G
Sbjct: 523 AIDLALKTYYLASGSKDGIVMTWNIQNGTFLGK-IDCDCEVNAVKFSPNKYWLFVGTSEG 699
Query: 278 VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329
++I++L Q K + I A PI + K+ CTSLAW+A G LFAGF+
Sbjct: 700 IQIWDLPNQKK--IKDIRASPIDAQHKSQKKSIACTSLAWDASGHTLFAGFS 849
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%)
Frame = +1
Query: 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFV 79
H DWVT + F Q + SP+++S S DKT+ +W N + H GH +
Sbjct: 373 HQDWVTCV--KFHQ--DAKSPLVVSASMDKTIKVW------DNQTMTLKH-TFVGHKTQI 519
Query: 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE 139
+ + L+ + + S S D + W+++ GT + + EV +V FSP N+ L G
Sbjct: 520 NAIDLALKTYYLASGSKDGIVMTWNIQNGTFLGK-IDCDCEVNAVKFSP-NKYWLFVGTS 693
Query: 140 REIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
I++W++ + K +R SPI + +K Q + S+ WD
Sbjct: 694 EGIQIWDLPNQKKIKD------------IRASPI-DAQHKSQKKSIACTSLAWDA 819
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Frame = +1
Query: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE--NCFAISSS 95
D+ + SG RDK + IW E + F + + H +V+ + Q+ + +S+S
Sbjct: 280 DNRQIASGGRDKALKIWNTVGECK---FTVDANS---HQDWVTCVKFHQDAKSPLVVSAS 441
Query: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS 155
DKT+++WD +T T FVGH++++ ++ + + S + + WNI
Sbjct: 442 MDKTIKVWDNQTMTLKHTFVGHKTQINAIDLALKTYYLASGSKDGIVMTWNIQNGTFLGK 621
Query: 156 AEKENHSDWVSCVRYSP 172
+ + V+ V++SP
Sbjct: 622 IDCDCE---VNAVKFSP 663
>12806
Length = 961
Score = 213 bits (542), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 172/290 (59%), Gaps = 8/290 (2%)
Frame = +3
Query: 40 PVLISGSRDKTVMIWKL---YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96
P LISG RD +++W L + +++ +G+P K LTGH+HF+SDLALS ++ FA+SSSW
Sbjct: 48 PFLISGGRDNNIIVWDL*PKKDGDEDQTWGVPRKTLTGHSHFISDLALSADSRFALSSSW 227
Query: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
D TLRLWD++ G+T RF+ H +V +VAFSPDNRQI S G ++ +K+WNI+GECK+ +
Sbjct: 228 DATLRLWDIKKGSTTSRFINHTRDVLTVAFSPDNRQIASGGRDKNLKIWNIMGECKY-TV 404
Query: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW-NTNFQIRYTFKAHESN 215
+ H+DWV+CVR+ K+ P S D +KVW N ++ TF H++
Sbjct: 405 DANAHTDWVTCVRFHQDTKN--------PIVVSASNDKTIKVWDNHTMTLKNTFVGHKAQ 560
Query: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF----NPKLQWVA 271
+ L +S N Y+ +G KD + W++ ++ + D IN I F N K W+
Sbjct: 561 ITALDMSTN--YLVSGSKDGIAMTWNVAEGSFVGK-IDCDDQINAIKFNIENNKKKVWLF 731
Query: 272 VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG 321
+GT G++I++ + K + ++A PI ++ K CTSLA AL
Sbjct: 732 IGTQNGIQIWDYSGEKK--IKELKASPIDPQNAKQKKPIACTSLASTALA 875
>30256
Length = 961
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 10/254 (3%)
Frame = +3
Query: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
+ISGS D+++ +W N G+ L GH+ V L+LS + +S S D TLR
Sbjct: 81 VISGSTDRSLKVW-------NADTGVCTHTLYGHSSTVRCLSLSGKK--VVSGSRDATLR 233
Query: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
+WD+ +G +GH + V V + D ++++S + +++W+
Sbjct: 234 VWDIESGHCLNVLLGHMAAVRCVQY--DGKRVVSGAXDYTVRVWD--------------- 362
Query: 162 SDWVSCVRYSPIMKSANKVQPF---APYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVN 217
D SC+ + N+V Y S D ++VW+ ++ +T H+S +
Sbjct: 363 PDTASCLH--TLQGHTNRVYSLQFDGVYVVSGSLDTSIRVWDVRCGKLVHTLMGHQSLTS 536
Query: 218 HLSISPNGKYIATGGKDKKLLIWDI------LNLTYPQREFDAGSTINQIAFNPKLQWVA 271
L + N + +G D + +WD+ L P + A + + FN K V
Sbjct: 537 GLELKDN--LLVSGNADSTVKVWDVHTGKCLQTLLGPNKHRSA---VTCLQFNKKFV-VT 698
Query: 272 VGTDQGVKIFNLMT 285
D VK+++L T
Sbjct: 699 CSDDGTVKLWDLNT 740
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 6/171 (3%)
Frame = +3
Query: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA-----LTGHNHFVSDLALSQENCFAI 92
D ++SG+ D TV +W P A L GH + V L + + +
Sbjct: 309 DGKRVVSGAXDYTVRVWD------------PDTASCLHTLQGHTNRVYSLQF--DGVYVV 446
Query: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGEC 151
S S D ++R+WD+R G +GHQS + + ++S A+ +K+W++ G+C
Sbjct: 447 SGSLDTSIRVWDVRCGKLVHTLMGHQS--LTSGLELKDNLLVSGNADSTVKVWDVHTGKC 620
Query: 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202
+ H V+C++++ + + DG +K+W+ N
Sbjct: 621 LQTLLGPNKHRSAVTCLQFNK------------KFVVTCSDDGTVKLWDLN 737
>13335
Length = 863
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 14/210 (6%)
Frame = +1
Query: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGE 150
+S S D T+ +W++ T + +VGH+ V ++A+SP+ ++S ++ +W+ G
Sbjct: 109 VSGSDDDTICMWEVATQKLVRSYVGHEDSVMALAYSPNGHYLVSGSPNGDLYVWDASFGH 288
Query: 151 CKFSSAEKENHSDWVSCVRYSPIMKS--ANKVQPFAPYFASVGWDGRLKVWN-------- 200
C+ + + H V+C +SP + A A+ G D +K+W
Sbjct: 289 CRHLTLRVDAHDLGVTCCEFSPTFGTACAENSSTCNLLLATGGKDNLIKLWTFSAQVGSP 468
Query: 201 -TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD-ILNLTYPQREFDAGSTI 258
Q R H V + SP+ +A+G DK + +WD + + E +
Sbjct: 469 EVTLQCRDILSGHSDLVMACAFSPSSALLASGSFDKSVRLWDSVKGVALFSIEACHSRFV 648
Query: 259 NQIAFNPKLQWVAVGT-DQGVKIFNLMTQS 287
AF+ +A G+ D+ +KI+ L S
Sbjct: 649 TCCAFSIDGTLLASGSMDRIIKIWKLTDTS 738
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 26/259 (10%)
Frame = +1
Query: 12 VKRGILEG---HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68
VK G ++G H+ + V FS + L+SGS D T+ +W++ ++
Sbjct: 19 VKTGSIKGEYQHASKSSIRVCKFSPSSSH----LVSGSDDDTICMWEVATQKLV------ 168
Query: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVA 125
++ GH V LA S + +S S + L +WD G R H V
Sbjct: 169 -RSYVGHEDSVMALAYSPNGHYLVSGSPNGDLYVWDASFGHCRHLTLRVDAHDLGVTCCE 345
Query: 126 FSPD------------NRQILSAGAEREIKLWNI---LGECKFSSAEKE---NHSDWVSC 167
FSP N + + G + IKLW +G + + ++ HSD V
Sbjct: 346 FSPTFGTACAENSSTCNLLLATGGKDNLIKLWTFSAQVGSPEVTLQCRDILSGHSDLVMA 525
Query: 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR-YTFKA-HESNVNHLSISPNG 225
+S P + AS +D +++W++ + ++ +A H V + S +G
Sbjct: 526 CAFS----------PSSALLASGSFDKSVRLWDSVKGVALFSIEACHSRFVTCCAFSIDG 675
Query: 226 KYIATGGKDKKLLIWDILN 244
+A+G D+ + IW + +
Sbjct: 676 TLLASGSMDRIIKIWKLTD 732
>03156
Length = 1014
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 13/298 (4%)
Frame = +1
Query: 7 LDIQVVKRGILE----GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN 62
L +++ K G LE GH +T + G S + S SRDKT+ +W+
Sbjct: 1 LSLRLSKMGRLEDRWTGHDREITKVCYGASCNG------MFSASRDKTIKMWQR------ 144
Query: 63 GYFGIPH--KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE 120
G H + GH+ V+ + L+ +N S S D T+R+WD+ TG ++ Q+
Sbjct: 145 ---GNSHSIRDFIGHDMVVTAIHLNTDNTLLCSGSRDNTVRIWDVETGACLRQNNIPQNL 315
Query: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
V V + P + I+ AG ++E+++++ S K+ + +SC +
Sbjct: 316 VTDVKWLPGSHLIIQAGEDKEVRIYDSRTLGIVRSFTKKQYIQ-MSC----DVTADGQFC 480
Query: 181 QPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGK---YIATGGKDKK 236
+ F G + L W ++ I+ FK H + P+ + IAT +D
Sbjct: 481 LTCSNGFGGNGCEATL--WQLSDGSIQNEFKGHREAIEACLFLPSNQDMTLIATASRDCS 654
Query: 237 LLIWDILNL-TYPQREFDA-GSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPV 291
+ +W++ ++ F+ G + IA+ V VGT + GV++ +L QS +
Sbjct: 655 VRVWNMFTKECVCEQNFEGTGPLTSMIAYGDGS--VLVGTFNLGVQVMSLNGQSSLDI 822
>03387
Length = 1891
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Frame = +1
Query: 113 RFVGHQSEVYSVAFSPD-NRQILSAGAEREIKLWNILGECKFSSAEKEN-----HSDWVS 166
R GHQ E Y ++++P+ N +LSA + I LW+I + S + H+ V
Sbjct: 346 RLKGHQKEGYGLSWNPNLNGHLLSASDDHTICLWDINSTQRESRVVDAHTIFTGHTSVVE 525
Query: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW----NTNFQIRYTFKAHESNVNHLSIS 222
V + + +S F SV D +L +W NT + + AH + VN LS +
Sbjct: 526 DVAWHLLHES---------LFGSVADDQKLMIWDTRSNTTSKPSHVVDAHTAEVNCLSFN 678
Query: 223 PNGKYI-ATGGKDKKLLIWDILNLTYPQREFDAG-STINQIAFNPKLQWV--AVGTDQGV 278
P ++I ATG DK + +WD+ NL F++ I Q+ ++P + + + GTD+ +
Sbjct: 679 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 858
Query: 279 KIFNL 283
+++L
Sbjct: 859 HVWDL 873
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Frame = +1
Query: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKT 99
+L +GS DKTV +W L + + H + + S N SS D+
Sbjct: 694 ILATGSADKTVALWDLRN------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 855
Query: 100 LRLWDL------------RTGTTYKRFV--GHQSEVYSVAFSPDNRQILSAGAEREI-KL 144
L +WDL G F+ GH +++ +++P+ I+ + +E I ++
Sbjct: 856 LHVWDLSKIGEEQLPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIVCSVSEDNIMQV 1035
Query: 145 WNI 147
W +
Sbjct: 1036WQM 1044
>01327
Length = 2215
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 9/282 (3%)
Frame = +3
Query: 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPH--KALTGHN 76
GH +T + G S + S SRDKT+ +W+ G H + GH+
Sbjct: 159 GHDREITKVCYGASCNG------MFSASRDKTIKMWQR---------GNSHSIRDFIGHD 293
Query: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
V+ + L+ +N S S D T+R+WD+ TG ++ Q+ V V + P + I+ A
Sbjct: 294 MVVTAIHLNTDNTLLCSGSRDNTVRIWDVETGACLRQNNIPQNLVTDVKWLPGSHLIIQA 473
Query: 137 GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196
G ++E+++++ S K+ + +SC + + F G + L
Sbjct: 474 GEDKEVRIYDSRTLGIVRSFTKKQYIQ-MSC----DVTADGQFCLTCSNGFGGNGCEATL 638
Query: 197 KVWN-TNFQIRYTFKAHESNVNHLSISPNGK---YIATGGKDKKLLIWDILNL-TYPQRE 251
W ++ I+ FK H + P+ + IAT +D + +W++ ++
Sbjct: 639 --WQLSDGSIQNEFKGHREAIEACLFLPSNQDMTLIATASRDCSVRVWNMFTKECVCEQN 812
Query: 252 FDA-GSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPV 291
F+ G + IA+ V VGT + GV++ +L QS +
Sbjct: 813 FEGTGPLTSMIAYGDGS--VLVGTFNLGVQVMSLNGQSSLDI 932
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 114/266 (42%), Gaps = 14/266 (5%)
Frame = +3
Query: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
+ +SGS+DK+V+++ + QNG TGH+ ++ + S+S DKT+
Sbjct: 81 LCLSGSKDKSVVLY----DYQNGRL---EDRWTGHDREITKVCYGASCNGMFSASRDKTI 239
Query: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
++W + + F+GH V ++ + DN + S + +++W++
Sbjct: 240 KMWQRGNSHSIRDFIGHDMVVTAIHLNTDNTLLCSGSRDNTVRIWDV------------- 380
Query: 161 HSDWVSCVRYSPI---MKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNV 216
+ +C+R + I + + K P + G D ++++++ I +F +
Sbjct: 381 --ETGACLRQNNIPQNLVTDVKWLPGSHLIIQAGEDKEVRIYDSRTLGIVRSFTKKQYIQ 554
Query: 217 NHLSISPNGKYIAT-----GGKDKKLLIWDILNLTYPQREFDAG-STINQIAFNPKLQWV 270
++ +G++ T GG + +W + + + Q EF I F P Q +
Sbjct: 555 MSCDVTADGQFCLTCSNGFGGNGCEATLWQLSDGSI-QNEFKGHREAIEACLFLPSNQDM 731
Query: 271 AV----GTDQGVKIFNLMTQSKAPVC 292
+ D V+++N+ T K VC
Sbjct: 732 TLIATASRDCSVRVWNMFT--KECVC 803
>07665
Length = 435
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%)
Frame = -2
Query: 258 INQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317
IN + F+P W+ V +KI++L + E P + K + PQC SLAW
Sbjct: 341 INALCFSPNRYWLCVAYGPSIKIWDLACKKTVE----ELRPEVVSPTSKAEQPQCLSLAW 174
Query: 318 NALGKKLFAGFTDGVIRTFSFETSAN 343
+ G+ LFAG++D IR + SA+
Sbjct: 173 STDGQTLFAGYSDNTIRVWQVSVSAH 96
>12574
Length = 521
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%)
Frame = +3
Query: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
L GH+ ++++ K + + L S S DK + IW Y+ G K + GH
Sbjct: 174 LAGHTKALSAV------KFSPNGDWLASSSADKLIKIWGAYD-------GKFEKTIAGHK 314
Query: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
+SD+A S ++ S+S DKTL++W+ TG K GH + V+ F+P + I+S
Sbjct: 315 LGLSDVAWSSDSKLLCSASDDKTLKIWEFSTGKCMKTLKGHSNYVFCCNFNPQSNLIVSG 494
Query: 137 GAER 140
R
Sbjct: 495 SLMR 506
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +3
Query: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
L GH +S + S + SSS DK +++W G K GH+ + VA+S D++
Sbjct: 174 LAGHTKALSAVKFSPNGDWLASSSADKLIKIWGAYDGKFEKTIAGHKLGLSDVAWSSDSK 353
Query: 132 QILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSP 172
+ SA ++ +K+W G+C + HS++V C ++P
Sbjct: 354 LLCSASDDKTLKIWEFSTGKCM---KTLKGHSNYVFCCNFNP 470
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
+ +++T H ++ + SPNG ++A+ DK + IW
Sbjct: 156 YTLKFTLAGHTKALSAVKFSPNGDWLASSSADKLIKIW 269
>02147
Length = 1547
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 31/257 (12%)
Frame = +2
Query: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
G EGH V + N ++ +G+ D + IW + E+ F
Sbjct: 155 GTFEGHKGAV------WGATLNREATRAATGAADFSAKIWDAEKGEELQTFS-------- 292
Query: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
H H V + S + ++ S +K L+++DL T K F GH S + F D ++I
Sbjct: 293 HKHIVKSVDFSHDGTALLTGSNEKLLKVFDLVNTDAEPKSFAGHTSNIKGALFLSDGKRI 472
Query: 134 LSAGAEREIKLWNI-----LGECKFSSAEKE------------NHSDWVSCVRYSPIMKS 176
+SA ++ ++LW++ + + F + HS ++ + + ++
Sbjct: 473 ISASDDKTVRLWSLETCQEVQQLTFDTPPTSLTLSPDKNTIIVTHSQNIAFYQ-ADTLRE 649
Query: 177 ANKVQPFAP-----------YFASVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISP 223
K + AP +F + G D ++ ++ T +I +FK H V+ + SP
Sbjct: 650 MKKFEAEAPISSASLHQSERFFVAGGEDFKMYKFDYETGKEIE-SFKGHFGPVHCVRFSP 826
Query: 224 NGKYIATGGKDKKLLIW 240
+G+ A+G +D L +W
Sbjct: 827 DGELYASGSEDGTLRLW 877
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 1/230 (0%)
Frame = +2
Query: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
GH V L++E A + + D + ++WD G + F H+ V SV FS D +
Sbjct: 167 GHKGAVWGATLNREATRAATGAADFSAKIWDAEKGEELQTF-SHKHIVKSVDFSHDGTAL 343
Query: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
L+ E+ +K+++++
Sbjct: 344 LTGSNEKLLKVFDLV--------------------------------------------- 388
Query: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR-EF 252
NT+ + + +F H SN+ +GK I + DK + +W + Q+ F
Sbjct: 389 ------NTDAEPK-SFAGHTSNIKGALFLSDGKRIISASDDKTVRLWSLETCQEVQQLTF 547
Query: 253 DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKA 302
D T + +P + V Q + + T + EA PI+ A
Sbjct: 548 DTPPT--SLTLSPDKNTIIVTHSQNIAFYQADTLREMKKFEAEA-PISSA 688
>19949
Length = 903
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 2/169 (1%)
Frame = +2
Query: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
V L + S S D ++LWD+R + GH V + FSPD R I SA
Sbjct: 2 VKSLDFHPYGAYTASGSMDCNVKLWDIRRKGCIYTYKGHTGCVCCLRFSPDGRWIASASE 181
Query: 139 EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198
+ +KLW++ + + + H D V+ + + P AS D +K
Sbjct: 182 DGLVKLWDLTAGKLLT--DLKLHRDAVNTIEF----------HPHEFLLASGSADRTVKF 325
Query: 199 WN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK-KLLIWDILNL 245
W+ FQ+ T + +++ + P+G + +G KD K+ W+ L L
Sbjct: 326 WDLETFQLISTTEPEANSIRSILFHPDGVCLYSGSKDTLKVYHWEPLEL 472
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 2/164 (1%)
Frame = +2
Query: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANK 179
V S+ F P S + +KLW+I + C ++ + H+ V C+R+SP +
Sbjct: 2 VKSLDFHPYGAYTASGSMDCNVKLWDIRRKGCIYT---YKGHTGCVCCLRFSPDGR---- 160
Query: 180 VQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
+ AS DG +K+W+ T ++ K H VN + P+ +A+G D+ +
Sbjct: 161 ------WIASASEDGLVKLWDLTAGKLLTDLKLHRDAVNTIEFHPHEFLLASGSADRTVK 322
Query: 239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFN 282
WD+ ++I I F+P + G+ +K+++
Sbjct: 323 FWDLETFQLISTTEPEANSIRSILFHPDGVCLYSGSKDTLKVYH 454
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%)
Frame = +2
Query: 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW 103
SGS D V +W + + G GH V L S + + S+S D ++LW
Sbjct: 44 SGSMDCNVKLWDI---RRKGCI----YTYKGHTGCVCCLRFSPDGRWIASASEDGLVKLW 202
Query: 104 DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS 162
DL G H+ V ++ F P + S A+R +K W++ S+ E E +S
Sbjct: 203 DLTAGKLLTDLKLHRDAVNTIEFHPHEFLLASGSADRTVKFWDLETFQLISTTEPEANS 379
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 42/105 (40%)
Frame = +2
Query: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
+ S S D V +W L G L H V+ + S S D+T++
Sbjct: 164 IASASEDGLVKLWDLTA-------GKLLTDLKLHRDAVNTIEFHPHEFLLASGSADRTVK 322
Query: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
WDL T + + S+ F PD L +G++ +K+++
Sbjct: 323 FWDLETFQLISTTEPEANSIRSILFHPDG-VCLYSGSKDTLKVYH 454
>27465
Length = 658
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = -1
Query: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF---AI 92
N+ I+GS D+T IW E+ L GH + V +A + N F I
Sbjct: 334 NKSGSSFITGSYDRTCKIWDTASAEEL-------HTLEGHRNVVYAIAFN--NPFGDKVI 182
Query: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
+ S+DKT +LW G Y GH +E+ V+F+P + I + + +LW++
Sbjct: 181 TGSFDKTCKLWSTADGKCYHTLRGHTAEIVCVSFNPSSTLIATGSMDTTCRLWDV 17
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = -1
Query: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF-SP 128
K L H ++++A ++ I+ S+D+T ++WD + GH++ VY++AF +P
Sbjct: 379 KVLRAHILPLTNVAFNKSGSSFITGSYDRTCKIWDTASAEELHTLEGHRNVVYAIAFNNP 200
Query: 129 DNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSP 172
++++ ++ KLW+ G+C + H+ + CV ++P
Sbjct: 199 FGDKVITGSFDKTCKLWSTADGKCYHTL---RGHTAEIVCVSFNP 74
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = -1
Query: 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK----ENHSDWVS 166
+K H + +VAF+ ++ +R K+W+ +SAE+ E H + V
Sbjct: 382 FKVLRAHILPLTNVAFNKSGSSFITGSYDRTCKIWDT------ASAEELHTLEGHRNVVY 221
Query: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNG 225
+ ++ PF + +D K+W+T + + +T + H + + +S +P+
Sbjct: 220 AIAFN---------NPFGDKVITGSFDKTCKLWSTADGKCYHTLRGHTAEIVCVSFNPSS 68
Query: 226 KYIATGGKDKKLLIWDI 242
IATG D +WD+
Sbjct: 67 TLIATGSMDTTCRLWDV 17
>02090
Length = 1841
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 31/198 (15%)
Frame = -3
Query: 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE 141
LA+S + S D + +WDL T ++F GH + SPD ++ + G +
Sbjct: 1608 LAISPDGKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISPDGTKLWTGGLDNT 1429
Query: 142 IKLWNILGECKFSSAEKENHSDWVSCVRYSPI-------MKSAN---------------- 178
++ W++ + ++ + S + + Y P M+S+N
Sbjct: 1428 VRSWDLR---EGRQLQQHDFSSQIFSLGYCPTGEWLAVGMESSNVEVLHHSKPDKYQLHL 1258
Query: 179 --------KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIAT 230
K +F S G D L W T + S+V I+ + KYI T
Sbjct: 1257 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIAADDKYIVT 1078
Query: 231 GGKDKKLLIWDILNLTYP 248
G DKK +++++ T P
Sbjct: 1077 GSGDKKATLYEVIF*TLP 1024
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = -3
Query: 177 ANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
A + P S DG + VW+ + Q + F+ H + + ISP+G + TGG D
Sbjct: 1611 ALAISPDGKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISPDGTKLWTGGLDN 1432
Query: 236 KLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTD 275
+ WD+ Q+ D S I + + P +W+AVG +
Sbjct: 1431 TVRSWDLREGRQLQQH-DFSSQIFSLGYCPTGEWLAVGME 1315
>13278
Length = 870
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +1
Query: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
S+S+D T+RLW++ G HQ VYSVAFSPD + + S ++ + +WN+
Sbjct: 127 SASFDSTVRLWEVERGLCLHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNV 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 187 FASVGWDGRLKVWNTNFQI-RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
AS +D +++W + +T H+ V ++ SP+GKY+A+G DK + IW++
Sbjct: 121 LASASFDSTVRLWEVERGLCLHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNV 291
>17602
Length = 481
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Frame = +3
Query: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKE 159
R+WD++TG K H V +V F+ D I+S+ + ++W+ G+C + + +
Sbjct: 3 RIWDVKTGKCLKTLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLXTLIDDD 182
Query: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN--- 215
N VS V++SP K Y + D LK+W+ + + T+ H +
Sbjct: 183 NPP--VSFVKFSPNGK----------YILAATLDNTLKLWDYSKGKCLKTYVGHRNEKYC 326
Query: 216 -VNHLSISPNGKYIATGGKDKKLLIWDILN 244
+ S++ GK+I +G +D + IW++L+
Sbjct: 327 IFANFSVT-GGKWIVSGSEDNMVYIWNLLD 413
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Frame = +3
Query: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
L HSD VT++ N D +++S S D IW + + N
Sbjct: 42 LPAHSDPVTAV------HFNRDGSLIVSSSYDGLCRIWDTASGQ------CLXTLIDDDN 185
Query: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV--AFS-PDNRQI 133
VS + S + ++++ D TL+LWD G K +VGH++E Y + FS + I
Sbjct: 186 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYVGHRNEKYCIFANFSVTGGKWI 365
Query: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV 168
+S + + +WN+L + + A + V C+
Sbjct: 366 VSGSEDNMVYIWNLLDQGDSTEATGSHRRGAVLCL 470
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS-VAFSP 128
K L H+ V+ + +++ +SSS+D R+WD +G + + S V FSP
Sbjct: 36 KTLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLXTLIDDDNPPVSFVKFSP 215
Query: 129 DNRQILSAGAEREIKLWN 146
+ + IL+A + +KLW+
Sbjct: 216 NGKYILAATLDNTLKLWD 269
>03395
Length = 2795
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 2/201 (0%)
Frame = +2
Query: 42 LISGSRDKTVMIWKLYEEEQNGYF-GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
L+SG + V +W + ++ G G + H V+ + + + +S+S D +
Sbjct: 41 LVSGGGEGQVRVWDIVKDMLTGKTRGDLVANMKEHKGKVTAIQIHTNDRCCVSASTDGST 220
Query: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
+WDL T T + V + V F + IL++G + +I W + G+ + +
Sbjct: 221 IIWDLIT-NTRSQIVLANTLFKCVCFGGKDLHILTSGTDHKIGYWEV-GDGGLLRELEGS 394
Query: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHL 219
+ ++ + + + G D LK+W N ++ +T H + +
Sbjct: 395 QTGAINTI----------DIDRDGQTILTGGEDSLLKLWRYNEGEVTHTGIGHSNQITKA 544
Query: 220 SISPNGKYIATGGKDKKLLIW 240
I PN YI +GG+D L IW
Sbjct: 545 RICPNRHYIVSGGEDGALHIW 607
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/116 (18%), Positives = 47/116 (40%)
Frame = +2
Query: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
+D +L SG+ D + W++ G G+ + ++ + + ++ ++
Sbjct: 299 GKDLHILTSGT-DHKIGYWEV------GDGGLLRELEGSQTGAINTIDIDRDGQTILTGG 457
Query: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
D L+LW G +GH +++ P+ I+S G + + +W C
Sbjct: 458 EDSLLKLWRYNEGEVTHTGIGHSNQITKARICPNRHYIVSGGEDGALHIWKFPDGC 625
>01598
Length = 1545
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 22/241 (9%)
Frame = +1
Query: 30 GFSQKENEDSPVLI-SGSRDKTVMIWKLYEEEQNGYFGIPHK---ALTGHNHFVSDLA-- 83
G + E + LI +GS+D+T+ +W L + +Q +P++ A + F LA
Sbjct: 70 GLTDPERDTGGCLIATGSKDRTIRVWTLSQGKQIFMKKLPNQRREAGDTGSRFKVWLAIH 249
Query: 84 -LSQENCFAISSSWDKTLRLWDLR--TGTTYKRFVG-----HQSEVYSVAFS-PDNRQIL 134
L +SSS L LW LR G Y+ F H V+++ S PD++ +
Sbjct: 250 WLKSNPEQLVSSSSGGDLLLWSLRYTKGQAYQTFQTSDYRPHMRPVFNICASGPDSKTLC 429
Query: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-WD 193
+ +R++ LW++ E + A V CVR SPI P +VG D
Sbjct: 430 TFAQDRQVVLWDL--ETMEAVASMATLGGHVYCVRTSPI----------DPGRVAVGVGD 573
Query: 194 GRLKVWNTN-----FQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTY 247
++ WN + + + ++ +S V ++ P + ++ G D ++ ++D+L+
Sbjct: 574 SMIRTWNMSNKTNPYDVTTLWQGIKSKVTAVAWHPTKEGWLGFGTDDGRIGVFDVLSHKM 753
Query: 248 P 248
P
Sbjct: 754 P 756
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 70 KALTGHNHFVSDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
+ L+GH+ V+D++ S + +S +D +WD++ GT +F GH + + FS
Sbjct: 1282 RELSGHSQRVTDMSWSPHHDARLVSVGYDAEAFVWDVQKGTALAQFKGHMGRLLTCQFSG 1461
Query: 129 -DNRQILSAGAEREIKLWNI 147
D +++ G++ + +W +
Sbjct: 1462 LDPDLVMTGGSDASVHVWRV 1521
>15337
Length = 860
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = -1
Query: 182 PFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
P + Y A VG DG L+V+N N ++ T K++ + + SP+GKYI TGG+D + +W
Sbjct: 299 PCSRYLAVVGQDGHLRVFNYNSMELIGTMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 120
Query: 241 DILNLTYPQREFDAGSTINQIAFN 264
R S +N +AF+
Sbjct: 119 SFHEKRVVCRGHGHKSWVNVVAFD 48
>18981
Length = 407
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Frame = -2
Query: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
++IS + D+T+ +W L + H L GHN V + + +S SWDKTL
Sbjct: 382 MIISAATDRTLRVWCLKNT------CLLH-TLRGHNDDVECVCIYGRR--VVSGSWDKTL 230
Query: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKE 159
+W++ TG + GH + +V F D + +S A+ +++ W + G+C + +
Sbjct: 229 IVWEVDTGRPVHQLHGHTEAITAVQF--DEGKAVSGSADGDVRTWALDTGQCLLTMTTGQ 56
Query: 160 NHSDWVSCVRYSPIMKSA 177
+ V CV Y+ + +A
Sbjct: 55 DIE--VYCVVYNQEVIAA 8
>12960
Length = 550
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%)
Frame = +2
Query: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
DS ++ DK+V +W + E + K GH H V D S +N S D
Sbjct: 206 DSRYCMTCGSDKSVKLWNPHRE-------LFLKTYIGHGHEVLDAQGSGDNSQICSGGID 364
Query: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
KT+ L+D+ +G +++ H V V F+ ++ ILS + ++ W+
Sbjct: 365 KTVVLFDVASGQALRKYRDHAGTVNCVKFNEESTVILSGSLDNTVRAWD 511
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = +2
Query: 59 EEQNGYFGIPHK---ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV 115
+ N F +P + + V + S ++ + ++ DK+++LW+ K ++
Sbjct: 113 QNTNMKFELPDRKEVTINCKQQAVRAVRFSVDSRYCMTCGSDKSVKLWNPHRELFLKTYI 292
Query: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
GH EV S DN QI S G ++ + L+++ + +H+ V+CV+++
Sbjct: 293 GHGHEVLDAQGSGDNSQICSGGIDKTVVLFDVASGQALR--KYRDHAGTVNCVKFN 454
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Frame = +2
Query: 186 YFASVGWDGRLKVWNTNFQI-RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Y + G D +K+WN + ++ T+ H V S + I +GG DK ++++D+ +
Sbjct: 215 YCMTCGSDKSVKLWNPHRELFLKTYIGHGHEVLDAQGSGDNSQICSGGIDKTVVLFDVAS 394
Query: 245 LTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPV 291
++ D T+N + FN + + G+ D V+ ++ ++S P+
Sbjct: 395 GQALRKYRDHAGTVNCVKFNEESTVILSGSLDNTVRAWDTRSRSHTPI 538
>17266
Length = 480
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Frame = -1
Query: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
+S + D + +LWD+R G + F GH+S++ ++ + P+ + + +L++I +
Sbjct: 411 VSGACDASAKLWDVRDGMCKQTFSGHESDINAITYFPNGHAFATGSDDATCRLFDIRADQ 232
Query: 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-RLKVWNTNFQIRY-TF 209
+ +N ++ V +S KS + G+D +W+ Q R
Sbjct: 231 EIGMYSHDNIICGITSVAFS---KSGRLLLG--------GYDDFNCNIWDVLKQERTGVL 85
Query: 210 KAHESNVNHLSISPNGKYIATGGKDKKL 237
H++ V+ L ++ +G +ATG D L
Sbjct: 84 AGHDNRVSCLGVTEDGSAVATGSWDSFL 1
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Frame = -1
Query: 180 VQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
+ P F S D K+W+ + + TF HES++N ++ PNG ATG D
Sbjct: 435 LAPDMRTFVSGACDASAKLWDVRDGMCKQTFSGHESDINAITYFPNGHAFATGSDDATCR 256
Query: 239 IWDILN----LTYPQREFDAGSTINQIAFNPKLQWVAVGTDQ-GVKIFNLMTQSKAPV 291
++DI Y G I +AF+ + + G D I++++ Q + V
Sbjct: 255 LFDIRADQEIGMYSHDNIICG--ITSVAFSKSGRLLLGGYDDFNCNIWDVLKQERTGV 88
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = -1
Query: 219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG- 277
LS++P+ + +G D +WD+ + Q S IN I + P A G+D
Sbjct: 441 LSLAPDMRTFVSGACDASAKLWDVRDGMCKQTFSGHESDINAITYFPNGHAFATGSDDAT 262
Query: 278 VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC--TSLAWNALGKKLFAGFTD 330
++F++ + + + + N C TS+A++ G+ L G+ D
Sbjct: 261 CRLFDIRADQEIGMYSHD-------------NIICGITSVAFSKSGRLLLGGYDD 136
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -1
Query: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
+L+ G D IW + ++E+ G L GH++ VS L ++++ + SWD L
Sbjct: 159 LLLGGYDDFNCNIWDVLKQERTG-------VLAGHDNRVSCLGVTEDGSAVATGSWDSFL 1
>21105
Length = 650
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Frame = +1
Query: 181 QPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239
P P + D ++ ++ N ++ + AH +V L++ PNG Y+ +G D + +
Sbjct: 91 HPTMPITITAHEDRHIRFFDNNTGKLIHAMVAHLDSVTSLAVDPNGLYLLSGSHDCSIRL 270
Query: 240 WD------ILNLTYPQREFDAGSTINQIAFNPKLQWVA-VGTDQGVKIF 281
W+ + +T +++FD +I+ +AF+P+ ++A G D K+F
Sbjct: 271 WNLDSKTCVQEITSHRKKFD--ESIHDVAFHPQKPYIASAGADALAKVF 411
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Frame = +1
Query: 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99
P+ I+ D+ + + N + H A+ H V+ LA+ + +S S D +
Sbjct: 103 PITITAHEDRHIRFF------DNNTGKLIH-AMVAHLDSVTSLAVDPNGLYLLSGSHDCS 261
Query: 100 LRLWDLRTGTTYKRFVGHQSE----VYSVAFSPDNRQILSAGAEREIKLW 145
+RLW+L + T + H+ + ++ VAF P I SAGA+ K++
Sbjct: 262 IRLWNLDSKTCVQEITSHRKKFDESIHDVAFHPQKPYIASAGADALAKVF 411
>01768
Length = 1424
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 12/145 (8%)
Frame = +3
Query: 109 TTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSAE----KENHSD 163
T + H V V +SP+ + S +R +++WN + K S A E HS
Sbjct: 810 TEKSSYAAHTDSVEDVQWSPNEGNVFASCSVDRTLRIWNT--QQKPSKANVLTVPEAHSR 983
Query: 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW------NTNFQIRYTFKAHESNVN 217
++ + ++PI K AS G DG +K+W N + +FK H V
Sbjct: 984 DINVINWNPIEKH---------LLASGGDDGIIKIWDLRMFRNKPVSAQASFKLHSQPVT 1136
Query: 218 HLSISP-NGKYIATGGKDKKLLIWD 241
L +P + +A G+D ++ IWD
Sbjct: 1137SLEWNPQDSSVLAASGEDDQITIWD 1211
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 20/146 (13%)
Frame = +3
Query: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS-----------SAEKEN---HS 162
H +E +++ +SP K W + G+C + + EK + H+
Sbjct: 696 HTTEGFAIDWSP------------AAKGWLVTGDCTGAIYISQPSSSGWTTEKSSYAAHT 839
Query: 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-----IRYTFKAHESNVN 217
D V V++SP + FAS D L++WNT + + +AH ++N
Sbjct: 840 DSVEDVQWSPNEGNV---------FASCSVDRTLRIWNTQQKPSKANVLTVPEAHSRDIN 992
Query: 218 HLSISPNGKY-IATGGKDKKLLIWDI 242
++ +P K+ +A+GG D + IWD+
Sbjct: 993 VINWNPIEKHLLASGGDDGIIKIWDL 1070
>19863
Length = 502
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Frame = +1
Query: 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96
+D L+SGS D ++++W + G+ L GH +V+D+ SQ+ C+ +S S
Sbjct: 1 DDGLQLVSGSSDMSIVVWDVEN-------GVQKLRLQGHAGWVNDVHFSQDQCWLLSCSN 159
Query: 97 DKTLRLWDLRTGTTYKRFVGHQ 118
D T+R+W++ + H+
Sbjct: 160 DNTVRIWNIEESDQIPIVMEHK 225
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
+S S D ++ +WD+ G R GH V V FS D +LS + +++WNI
Sbjct: 19 VSGSSDMSIVVWDVENGVQKLRLQGHAGWVNDVHFSQDQCWLLSCSNDNTVRIWNI 186
>26107
Length = 1338
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = -3
Query: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
HN+ V D + + +++S D+T+ LWD+ T T F+GH+ V SVA P +
Sbjct: 1093 AHNNAVFDYSWISNDSQCLTASGDQTVALWDVETTTKVTTFIGHKCSVRSVASCPSSPAQ 914
Query: 134 LSAGA-EREIKLWN 146
++GA + I LW+
Sbjct: 913 CASGARDGHIMLWD 872
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA-LSQENCFAISSSW 96
D L+SGS T +IW++ + + F L GH VS + S + C + S
Sbjct: 391 DGKYLLSGSGRNTGVIWEVDKPNKRPLF------LIGHTEDVSAVDWCSTDVCKLATVSD 230
Query: 97 DKTLRLW 103
D++LR+W
Sbjct: 229 DRSLRIW 209
>37180
Length = 681
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPD 129
L GH+ +SD+ ++SS D T RLWD R + F GH V S F+
Sbjct: 4 VLNGHDQELSDVHAHPTQRLVVTSSKDMTFRLWDFRDSALLVNVFQGHTQPVTSAVFASG 183
Query: 130 NRQILSAGAEREIKLWNI 147
++ ++S +R +++W++
Sbjct: 184 DK-VVSGSDDRTVRVWDM 234
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 42/91 (46%)
Frame = +1
Query: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
+L GH ++ + A +Q+ ++++ S+D T +W + + GH
Sbjct: 4 VLNGHDQELSDVHAHPTQR------LVVTSSKDMTFRLWDFRDS------ALLVNVFQGH 147
Query: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLR 106
V+ + + +S S D+T+R+WD+R
Sbjct: 148 TQPVTSAVFASGDK-VVSGSDDRTVRVWDMR 237
>35607
Length = 475
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%)
Frame = +2
Query: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
D T+R WDLR G ++ S+++S+ + P L+ G E +L K
Sbjct: 41 DNTVRSWDLREGRQLQQH-DFSSQIFSLGYCPTG-DWLAVGMESSNV--EVLHHSKPDKY 208
Query: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNV 216
+ H V ++++ K +F S G D L W T + S+V
Sbjct: 209 QLHLHESCVLSLKFAYCGK----------WFVSTGKDNLLNAWRTPYGASIFQSKESSSV 358
Query: 217 NHLSISPNGKYIATGGKDKKLLIWDIL 243
I+ + KYI TG DKK +++++
Sbjct: 359 LSCDIAADDKYIVTGSGDKKATLYEVI 439
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 223 PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTD 275
P+G + TGG D + WD+ Q+ D S I + + P W+AVG +
Sbjct: 8 PDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGME 163
>26939
Length = 388
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
+ +S+S DKT+R+WDLR K HQ S+ F + ++S ++ +K+W
Sbjct: 8 YLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVW---- 175
Query: 150 ECK 152
EC+
Sbjct: 176 ECR 184
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
L+S S DKT+ +W L + K L H HF + + + + + IS S D+T++
Sbjct: 11 LVSASDDKTIRVWDLRNKR-------CMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVK 169
Query: 102 LWDLR 106
+W+ R
Sbjct: 170 VWECR 184
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 225 GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIF 281
GKY+ + DK + +WD+ N + + I F+ +V G+ DQ VK++
Sbjct: 2 GKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVW 175
>10264
Length = 416
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -1
Query: 70 KALTGHNHFVSDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
+ L+GH+ V+D++ S + +S +D +WD++ GT +F GH + + FS
Sbjct: 263 RELSGHSQRVTDMSWSPHHDARLVSVGYDAEAFVWDVQKGTALAQFKGHMGRLLTCQFSG 84
Query: 129 -DNRQILSAGAEREIKLWNI 147
D +++ G++ + +W +
Sbjct: 83 LDPDLVMTGGSDASVHVWRV 24
>02960
Length = 1577
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 24/235 (10%)
Frame = +2
Query: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA-LSQENC 89
Q+ + +SGS D TV +W E IP GH V +A + +
Sbjct: 491 LGQRHTRHTGXXLSGSYDNTVRLWSTKGE---AIMTIP-----GHTSPVKCVAWIKHDES 646
Query: 90 FAISS----SWDKTLRLWDLRTGT----TYKRFVGHQSEVYSVAFSPDNRQILSAGAERE 141
+S+ S D+T +W + T GH + V VA SPD++Q+ + ++
Sbjct: 647 SGVSTFVTGSHDQTALVWQWQRETNEVDCRLSCRGHAASVDCVAVSPDSQQMCTGSWDKM 826
Query: 142 IKLWNILGECKFSSAEKENHS--------------DWVSCVRYSPIMKSANKVQPFAPY- 186
+KLW+ +C + E+ V + S ++ + V+ P+
Sbjct: 827 LKLWST--DCNVDGDQSEDTERPSKKKKSAKSTTQTRVPVLTLSGHAEAVSAVRWLDPHR 1000
Query: 187 FASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
+ WD L++W+ + + + V ++ SP + TG D+ + + D
Sbjct: 1001VVTSSWDHSLRLWDLHTAQQTSLIQGSKAVLDVAYSPLSHMLITGSADRHVRLVD 1165
>19498
Length = 903
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 29/209 (13%)
Frame = -1
Query: 51 VMIWKL---YEEEQNGYFGIPHKALTGHNHF--VSDLALSQENCFAISSSWDKTLRLWDL 105
V+IW + +E++ +P +H V+ + S+ F S DK + +W +
Sbjct: 876 VVIWNMAPIRDEKEEADDDVPRVLCQMDSHLGCVNCVRWSENGKFLASGGDDKLIMIWQI 697
Query: 106 RTG-----------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148
G + GH +V +A+SP + + S + I +WN L
Sbjct: 696 SRGFGSGKSFGSNVTILEHWRSVATLRGHAGDVLDLAWSPQDLWLASCSVDNTIVVWNAL 517
Query: 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-----F 203
KFS V+ +R M P Y AS D L+VW T+
Sbjct: 516 ---KFSEQ--------VAVIRGHAGMVKGVTWDPVGRYLASQSDDKTLRVWRTSDWKEET 370
Query: 204 QIRYTFK--AHESNVNHLSISPNGKYIAT 230
++ FK ++V L+ SP+G ++ +
Sbjct: 369 CVKSCFKECGGTTHVLRLNWSPDGNHVVS 283
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Frame = -1
Query: 204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQ--- 260
++ +H VN + S NGK++A+GG DK ++IW I + F + TI +
Sbjct: 813 RVLCQMDSHLGCVNCVRWSENGKFLASGGDDKLIMIWQISRGFGSGKSFGSNVTILEHWR 634
Query: 261 --------------IAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305
+A++P+ W+A D + ++N + S E + G
Sbjct: 633 SVATLRGHAGDVLDLAWSPQDLWLASCSVDNTIVVWNALKFS---------EQVAVIRGH 481
Query: 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336
G + W+ +G+ L + D +R +
Sbjct: 480 AG---MVKGVTWDPVGRYLASQSDDKTLRVW 397
>14105
Length = 429
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Frame = +3
Query: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA----HES 214
E++SD+V V +SP+ + FA+V GRL +WN N +
Sbjct: 42 EDNSDYVMDVAWSPVHPA---------LFAAVDGSGRLDLWNLNQDTEVPTASIVVDGAP 194
Query: 215 NVNHLSISPNGKYIATGGKDKKLLIWDIL-NLTYPQRE----FDAGSTINQIAFN 264
+N +S +P+G ++ G + KL ++D+ +L P R+ F+A T+N++ N
Sbjct: 195 ALNRVSWTPSGLHVTIGDESGKLYVYDVAEHLALPTRDEWSRFNA--TLNELKMN 353
>11493
Length = 535
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 10/183 (5%)
Frame = -2
Query: 65 FGIPHKA----LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL-----RTGTTYKRFV 115
GIP A H V + +S + + + +++WD+ + + +
Sbjct: 522 VGIPRHARQINTLSHGEVVCAVTISNPTKY-VYTGGKGCVKVWDISQPGNKNPVSQLDCL 346
Query: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
+ + SV PD R ++ G + +W++ AE + + + SP K
Sbjct: 345 QRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAAPACYALAISPDSK 166
Query: 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKD 234
S DG + VW+ + +I F+ H + + ISP+G + TGG D
Sbjct: 165 ----------VCFSCCSDGNIAVWDLHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLD 16
Query: 235 KKL 237
+
Sbjct: 15 NTV 7
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 41/112 (36%)
Frame = -2
Query: 32 SQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91
S K D LI G + IW L LT LA+S ++
Sbjct: 324 SVKLLPDGRTLIVGGEASNLSIWDLASPTPR-----IKAELTSAAPACYALAISPDSKVC 160
Query: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK 143
S D + +WDL ++F GH + SPD ++ + G + ++
Sbjct: 159 FSCCSDGNIAVWDLHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTVR 4
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 6/155 (3%)
Frame = -2
Query: 187 FASVGWDGRLKVW------NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
+ G G +KVW N N + ++ + + + P+G+ + GG+ L IW
Sbjct: 435 YVYTGGKGCVKVWDISQPGNKNPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIW 256
Query: 241 DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPIT 300
D L P A T + P +A+ D V F+ + V + E +
Sbjct: 255 D---LASPTPRIKAELT----SAAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNEILV 100
Query: 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT 335
+ C ++ + G +L+ G D +R+
Sbjct: 99 RQFQGHTDGASCIDISPD--GSRLWTGGLDNTVRS 1
>31054
Length = 392
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Frame = -2
Query: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF--------VGHQSEVYS 123
L+GHN ++ LA++ + +S + + T+ LWD RTG ++R + +S ++
Sbjct: 301 LSGHNAIINTLAVNSDGVL-VSGADNGTMHLWDWRTGYNFQRIHAAVQPGSLDSESGFFA 125
Query: 124 VAFSPDNRQILSAGAEREIKLW 145
F ++++A A++ IK++
Sbjct: 124 CTFDQSESRLITAEADKTIKVY 59
>20662
Length = 1220
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Frame = +2
Query: 129 DNRQILSAGAEREIKLWNILGECKFSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
D+ ++L + LW + E K S + H D M ++ + +
Sbjct: 281 DSHKVLVGLDTGGVALWELQDEDKMFSMLSSACEHDD----------MTASVSINSDXSH 430
Query: 187 FASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDI 242
+ S +D +KVWNT+ YT++AH V + P + + +D K+++WD+
Sbjct: 431 YLSASYDHGIKVWNTDLTSLYTYRAHSDIVWDVQCHPTEPALFLSCSQDGKIVLWDV 601
>10162
Length = 1629
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 70/179 (39%), Gaps = 34/179 (18%)
Frame = +3
Query: 97 DKTLRLWDLRTGT---TYKRFVGHQSE-------------------------VYSVAFSP 128
D ++LWDL+TGT T++ V + E + V S
Sbjct: 222 DGVVKLWDLKTGTAVHTWQHSVMPEEEMPERNSSDEEDGEEVEVEREEDTVAILCVDCSA 401
Query: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ-----PF 183
DN I+S A+ K++N+ K SA +C N V+ P
Sbjct: 402 DNALIMSGCADATAKVFNV-SSGKLXSA--------FNCAASQDSQDKDNSVESVAFCPV 554
Query: 184 APYFASVGWDGRLKVWNTNFQI-RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
+PY A+ G ++VW+ + R++F+ H V L S + + T D + +WD
Sbjct: 555 SPYAATATNSGSVQVWDLPTSVARHSFQ-HPEGVCKLQWSSSTALLYTACLDGVMRVWD 728
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 28/79 (35%)
Frame = +3
Query: 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98
SP + + +V +W L F H V L S ++ D
Sbjct: 555 SPYAATATNSGSVQVWDLPTSVARHSFQ--------HPEGVCKLQWSSSTALLYTACLDG 710
Query: 99 TLRLWDLRTGTTYKRFVGH 117
+R+WD R+G + GH
Sbjct: 711 VMRVWDARSGASKAVLTGH 767
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 221 ISPNGKYIATGGKDKKLLIWDI 242
I PNGKY+ G D + +WD+
Sbjct: 183 ILPNGKYVCVGYSDGVVKLWDL 248
>15745
Length = 1183
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 86 QENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDNRQ--ILSAGAEREI 142
NC I+++ + T+R WDLR+ TY+ H V + F+P NRQ + S G + +
Sbjct: 611 HHNCAQIATANEATIRGWDLRSKQQTYQMEGAHGQLVRDLDFNP-NRQYYLASCGDDCRV 787
Query: 143 KLWNILGECKFSSAEKENHSDWV 165
K W+ C +HS WV
Sbjct: 788 KFWDTRN-CSEPLKVLSDHSHWV 853
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 165 VSCVRYSPIMKSANKVQPFAPYFASV-GWDGRLKVWNTNFQIRYTFK-AHESNVNHLSIS 222
++C R++P N Q A++ GWD R K Q Y + AH V L +
Sbjct: 587 LTCGRWNP---HHNCAQIATANEATIRGWDLRSK------QQTYQMEGAHGQLVRDLDFN 739
Query: 223 PNGKY-IATGGKDKKLLIWDILNLTYP 248
PN +Y +A+ G D ++ WD N + P
Sbjct: 740 PNRQYYLASCGDDCRVKFWDTRNCSEP 820
>12140
Length = 727
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Frame = +2
Query: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
++ +S G + +K+W + E HSDWV V ++P + V AS
Sbjct: 263 KRFVSGGCDNLVKIWREDETGWVEDQKLEGHSDWVRDVAWAPSIGLPRNV------IASC 424
Query: 191 GWDGRLKVW----NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
D R+ +W ++N V H+S S G +A G D K+ +W
Sbjct: 425 SQDCRVIIWTNDGSSNQWTSRILNKFSDVVWHVSWSVTGNILAVSGGDNKVTLW 586
>01462
Length = 995
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +2
Query: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
L +G+ D+ + +W + E Y A+ GH ++ + + + +S+S D T+R
Sbjct: 242 LYAGAGDRKIHVWDI---EAGQYL----NAMEGHKDYIHKVVMKNDAQECVSASEDGTVR 400
Query: 102 LWDLRTGT 109
+WD+R+ T
Sbjct: 401 MWDIRSST 424
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +2
Query: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
D+ + +WD+ G GH+ ++ V D ++ +SA + +++W+I
Sbjct: 260 DRKIHVWDIEAGQYLNAMEGHKDYIHKVVMKNDAQECVSASEDGTVRMWDI 412
>27270
Length = 1078
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Frame = +2
Query: 6 SLDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF 65
S++ + +GHS VT + D L S S D V+ W + N
Sbjct: 227 SVETHTYTHMLNKGHSKAVTDMCW------RADGRTLYSSSLDGHVIGWNV-----NTLH 373
Query: 66 GIPH-KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV 124
I KA +G +H V + L + + D T+++WDL T + F GH +EV +
Sbjct: 374 MIEKWKATSGRHHGVHCVCLCSSSRLLTA---DHTIKMWDLTTKNVLQEFSGHSTEVIKL 544
Query: 125 --AFSPDNRQ------------ILSAGAEREIKLWNILGECKFSSA 156
P + Q +A A+R I +W E ++A
Sbjct: 545 LPVLKPSSEQNDIGDSNLACYVFSAAAADRTINVWRCDSESSQATA 682
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 9/185 (4%)
Frame = +2
Query: 29 AGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88
+G ++ DS V+ GS D +V LY E + Y + +K GH+ V+D+ +
Sbjct: 149 SGEQHEDAADSAVVAVGSADGSV---GLYSVETHTYTHMLNK---GHSKAVTDMCWRADG 310
Query: 89 CFAISSSWDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
SSS D + W++ T +K G V+ V +R + A+ IK+W
Sbjct: 311 RTLYSSSLDGHVIGWNVNTLHMIEKWKATSGRHHGVHCVCLCSSSRLLT---ADHTIKMW 481
Query: 146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQP-----FAPY-FASVGWDGRLKVW 199
++ K E HS V ++ P++K +++ A Y F++ D + VW
Sbjct: 482 DLTT--KNVLQEFSGHSTEV--IKLLPVLKPSSEQNDIGDSNLACYVFSAAAADRTINVW 649
Query: 200 NTNFQ 204
+ +
Sbjct: 650 RCDSE 664
>15118
Length = 1074
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Frame = +3
Query: 100 LRLWDLRTGTTYKRF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
L +++L++G F V H S V VAF N +++AG + +IK W +
Sbjct: 129 LDIYNLQSGKHRGSFGDTVAHVSGVRGVAFDAFNCLLITAGGDCDIKFWRFGSRDRARVL 308
Query: 157 EKE-NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHES 214
KE S+ +S + + + +N + A V D + V + + ++ F H +
Sbjct: 309 LKELKMSEGISRI---LLHRDSNML-------AVVLEDFTVSVIDVDTLRVVRVFSGHSN 458
Query: 215 NVNHLSISPNGKYIATGGKDKKLLIWDILN 244
++ LS S +G+++ T D + W +++
Sbjct: 459 SITDLSFSGDGRWLITASMDCTVRTWSLVH 548
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
+ +GH++ ++DL+ S + + I++S D T+R W L G F ++ V S+ SP
Sbjct: 435 RVFSGHSNSITDLSFSGDGRWLITASMDCTVRTWSLVHGRLIDCF-AVEAAVTSLTMSP 608
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +3
Query: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148
D T+ + D+ T + F GH + + ++FS D R +++A + ++ W+++
Sbjct: 390 DFTVSVIDVDTLRVVRVFSGHSNSITDLSFSGDGRWLITASMDCTVRTWSLV 545
>15972
Length = 1069
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
TF H+ V HL++ P+GK T +D+ L +W+ +N
Sbjct: 222 TFSGHKGPVRHLAVHPSGKLTLTVSQDRTLRLWNNMN 332
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG 108
G P + +GH V LA+ ++ S D+TLRLW+ G
Sbjct: 207 G*PERTFSGHKGPVRHLAVHPSGKLTLTVSQDRTLRLWNNMNG 335
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRY 170
+ F GH+ V +A P + L+ +R ++LWN + G F S N + VR+
Sbjct: 219 RTFSGHKGPVRHLAVHPSGKLTLTVSQDRTLRLWNNMNGRIAFIS----NMKEAAESVRW 386
Query: 171 SP 172
+P
Sbjct: 387 AP 392
>34005
Length = 456
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Frame = +1
Query: 28 VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87
V G S + D+ L SGS D +V IW + G P LT H V +A
Sbjct: 121 VCGLSW--SPDATFLASGSNDNSVNIW----DSTLGMDVPPLHTLTSHQAAVKAVAWCPW 282
Query: 88 NCFAISSSW---DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
+++ D+ +R W+ TG K V QS+V SV + ++R+++S
Sbjct: 283 QTRMLATGGGTNDRHIRFWNTNTGACVKA-VDTQSQVCSVLWCKEHRELVS 432
>22113
Length = 614
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 186 YFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
+F S G D L W T + S+V IS + KYI TG DKK +++++
Sbjct: 144 WFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDISTDDKYIVTGSGDKKATVYEVI 317
>31384
Length = 474
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = -1
Query: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
LISGS D V W++ + Q IP KA H V D+ S + ++S DKT +
Sbjct: 222 LISGSWDNKVSCWEVQQSGQT----IP-KAQQTHTGPVLDVDWSDDGTKVFTASCDKTAK 58
Query: 102 LWDLRT 107
+WDL +
Sbjct: 57 VWDLNS 40
>14500
Length = 1238
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
L +W + GH + V +A SPD ++SA A+ ++LW
Sbjct: 411 LIIWKYPAMSRVAELTGHTARVLHMAMSPDGETVVSAAADETLRLW 548
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
T H V L SP+GKY+A+G D L +W
Sbjct: 44 TLSGHSQEVCGLRWSPDGKYLASGANDNLLCVW 142
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT 107
LTGH V +A+S + +S++ D+TLRLW T
Sbjct: 453 LTGHTARVLHMAMSPDGETVVSAAADETLRLWKCFT 560
>33180
Length = 460
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
H+ + L S +N + + D L ++D + + H +V +VAF+ D+ QIL
Sbjct: 456 HSFCIFSLMFSSDNTEIVGGANDGCLYVYDRESNQRTLKIDAHDDDVNAVAFADDSSQIL 277
Query: 135 SAGAEREI-KLWN 146
+G + + K+W+
Sbjct: 276 YSGGDDGLCKVWD 238
>16105
Length = 960
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Frame = -2
Query: 63 GYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTLRLWD-----LRTGTT--YKRF 114
G + + + GH V D+ N I+S S D T+++W L T T
Sbjct: 614 GRVPVDNPLVAGHKGAVLDIQWCPHNDNVIASASDDCTVKVWQIPDSGLVTNLTDPVVDL 435
Query: 115 VGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI 147
VGHQ + + P + +L SAGA+ +I WN+
Sbjct: 434 VGHQKRCCLIVWHPSAQNVLVSAGADNKILFWNV 333
>15780
Length = 735
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = -1
Query: 186 YFASVGWDGRLKVWNTNFQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Y ++ G D + VW+ AH V L S +G +A+GG D + +WD+
Sbjct: 732 YLSTAGADHTVIVWDIASGTAVAHLTAHTDTVYALCFSRDGTVLASGGMDNSIRLWDLAR 553
Query: 245 LTY---PQREFDAGSTINQIAFNPKL 267
+ P+ + + S+++ + NP L
Sbjct: 552 VMEEQDPETDSNVPSSLS-VNTNPAL 478
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
L + D TV++W + G LT H V L S++ S D ++R
Sbjct: 729 LSTAGADHTVIVWDIAS-------GTAVAHLTAHTDTVYALCFSRDGTVLASGGMDNSIR 571
Query: 102 LWDL 105
LWDL
Sbjct: 570 LWDL 559
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 226 KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNL 283
KY++T G D +++WDI + T T+ + F+ +A G D +++++L
Sbjct: 735 KYLSTAGADHTVIVWDIASGTAVAHLTAHTDTVYALCFSRDGTVLASGGMDNSIRLWDL 559
>14555
Length = 627
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = -3
Query: 48 DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT 107
D TV +W + G+ L GH++ VS L +S + + SWD TLR+W
Sbjct: 403 DYTVNVWDALK-------GMRSTILYGHDNRVSCLRISPDGTSLCTGSWDYTLRIW---- 257
Query: 108 GTTYKRFVGHQSEVYSVAF 126
+R GH S + +
Sbjct: 256 --A*ERERGHSSNIIRITL 206
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 193 DGRLKVWNTNFQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
D + VW+ +R T H++ V+ L ISP+G + TG D L IW
Sbjct: 403 DYTVNVWDALKGMRSTILYGHDNRVSCLRISPDGTSLCTGSWDYTLRIW 257
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
F+ HE+++N + P+G ATG D ++D+
Sbjct: 611 FEGHEADINCVRFYPSGDAFATGSDDATCRLFDL 510
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = -3
Query: 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
+ C +++ D T+ +WD G GH + V + SPD + + + +++W
Sbjct: 427 DCCLGVTN--DYTVNVWDALKGMRSTILYGHDNRVSCLRISPDGTSLCTGSWDYTLRIW 257
>29912
Length = 510
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
T H V L SP+GKY+A+G D L +W
Sbjct: 243 TLSGHSQEVCGLRWSPDGKYLASGANDNLLCVW 341
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Frame = +3
Query: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS------ 95
L G+ V +W + ++++ + + GH V L+ N F +SS
Sbjct: 54 LALGTSTGEVQVWDVTQQKKL-------RTMAGHAARVGSLSW---NSFIVSSGSRSGNI 203
Query: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
+R+ D GT GH EV + +SPD + + S + + +W
Sbjct: 204 HHHDVRVADHHVGT----LSGHSQEVCGLRWSPDGKYLASGANDNLLCVW 341
>05393
Length = 904
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Frame = +1
Query: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS-QENCFAISS 94
N +P+ + DK M++ + F + H+ V+ + LS Q I++
Sbjct: 118 NHHNPLQLLACTDKG-MVYCFDIRHEKPVFSV-----GAHSSCVTGVCLSSQIPGLMITT 279
Query: 95 SWDKTLRLWDLRTGTTYKRFVGH--QSEVYSVAFSPDNRQILS-AGAEREIKLWNI 147
S DKT+++WD++ F + E++ P+ + + G RE K+W+I
Sbjct: 280 SEDKTMKVWDIQDDKPTHVFSRNLKMKELHCTGCCPEAPFVFAVGGGRREPKVWDI 447
>19140
Length = 573
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -3
Query: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
L GH V L L+++ +S S D T+RLW L F H V+++ +
Sbjct: 499 LKGHTDNVKALVLNRDGTQCLSGSSDGTIRLWSLGQQRCVATFRVHDEGVWALQANESFT 320
Query: 132 QILSAGAEREI 142
+ S G + ++
Sbjct: 319 TLYSGGRDHQV 287
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 3/147 (2%)
Frame = -3
Query: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
L+GH+D V ++V N D +SGS D T+ +W L ++ F + H+
Sbjct: 499 LKGHTDNVKALVL------NRDGTQCLSGSSDGTIRLWSLGQQRCVATFRV-------HD 359
Query: 77 HFVSDLALSQENCFAISSSWDKTLRLW--DLRTGTTYKRFVGHQSEVYSVAFSP-DNRQI 133
V AL F S + ++W D++ + ++ V + +P D +
Sbjct: 358 EGV--WALQANESFTTLYSGGRDHQVWATDIKNPDNRELICEEKAPVLKLELTPTDPPSL 185
Query: 134 LSAGAEREIKLWNILGECKFSSAEKEN 160
A + IK W + +S E +N
Sbjct: 184 WVATTDSCIKNWPVRLPNPRASGEYDN 104
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
RT + GH V ++ + D Q LS ++ I+LW++
Sbjct: 523 RTCHKLMKLKGHTDNVKALVLNRDGTQCLSGSSDGTIRLWSL 398
>31474
Length = 403
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = -3
Query: 182 PFAPYFASVGWDGRLKVWNT---NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKL 237
P AS G D +K+W N+ + T AH V L SP G Y+++ D
Sbjct: 275 PTGTLLASCGSDKIIKIWGKEGDNWVCKSTLTDAHTRTVRSLGWSPCGNYLSSASFDATT 96
Query: 238 LIW 240
+W
Sbjct: 95 AVW 87
>16199
Length = 694
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
D +++WDL+ F GHQ V S++FS
Sbjct: 134 DSVIKIWDLKERANVANFQGHQGPVTSISFS 226
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = +1
Query: 90 FAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKL---W 145
+ +S+ D ++LWDLR +K +G + EV ++ F + AG++ + L W
Sbjct: 238 YLATSAEDSVVKLWDLRKLKNFKTLQLGDKYEVKALCFDQSGTYLAVAGSDVRVYLCKQW 417
Query: 146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202
N L A +H+ + VR+ A + AS D LK + N
Sbjct: 418 NEL-------AVFNDHTATATGVRFGTN----------ANFIASASMDRSLKFFGLN 537
>06576
Length = 1547
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 83 ALSQENCFAISSSWDKTLRLW--DLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAE 139
+L + CFA + D ++R++ DL+T GH V SV FSP + Q+ S G +
Sbjct: 1192 SLDKHLCFAAACD-DHSVRVFTSDLKTTNKTHVVKGHTDFVNSVTFSPTEEDQVXSTGDD 1016
Query: 140 REIKLWN 146
++W
Sbjct: 1015 LTCRVWT 995
>31864
Length = 545
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 3/163 (1%)
Frame = +2
Query: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWD---LRTGTTYKRFVGHQSEVYSVAFSPDNR 131
H ++D+ LS++ +++S D T +L+D L TYK + V S A SP
Sbjct: 47 HTGGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKT----ERPVNSAAISPILD 214
Query: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
++ G + ++ + ++ K F F +
Sbjct: 215 HVVLGGGQDAME-----------------------------VTTTSTKAGKFDSRFFHL- 304
Query: 192 WDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD 234
++ F K H +N L+ P+GK A+GG+D
Sbjct: 305 ------IYEEEFA---RLKGHFGPINSLAFHPDGKSYASGGED 406
>12841
Length = 1364
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 225 GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFN-PKLQWVAVG-TDQGVKIFN 282
G++ T K + W + N YP+R + + + + F+ +A G D GV I+N
Sbjct: 463 GQFDFTNQKSGLICCWSLKNPEYPERVYTSTHGVTSLDFSVANANILAAGYYDGGVAIYN 642
Query: 283 LMTQSKAPV 291
+ + S P+
Sbjct: 643 VRSTSDEPI 669
>21763
Length = 923
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +1
Query: 212 HESNVNHLSISPNGKYIAT--GGKDKKLLIWDILNLTYPQREFDAGSTINQ-IAFNPKLQ 268
H V+ ++ G Y AT DK +++ +L+ + Q F + Q + F+P
Sbjct: 181 HPKEVSKVTWHAKGDYFATVMPKGDKMSVLFHLLSKKHSQSPFSQSKGLIQCVKFHPLRP 360
Query: 269 WVAVGTDQGVKIFNLMTQ 286
V + + V+I+NL+TQ
Sbjct: 361 IFFVASQRFVRIYNLLTQ 414
>34511
Length = 1037
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 50 TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104
TVM ++ E++G L GH++ VS L +++ + SWD LR+W+
Sbjct: 15 TVMYGTQWKAERSGI-------LAGHDNRVSCLGVTENGMSVATGSWDSFLRVWN 158
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246
H++ V+ L ++ NG +ATG D L +W+ ++ T
Sbjct: 60 LAGHDNRVSCLGVTENGMSVATGSWDSFLRVWN*VSCT 173
>04524
Length = 1340
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = -1
Query: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSP 128
+ L GH V D+ L+ ++ D+ +R+ + +GH V + +
Sbjct: 1046 QLLLGHLSMVLDVCLTGREGHVVTCDRDEKIRVSQFPNAYNIHTYCLGHTQFVNCLVYVE 867
Query: 129 DNRQILSAGAEREIKLWNILGE--CKFSSAEKENHS 162
+ R ++S + ++ WN+ G+ C A+++ S
Sbjct: 866 EFRVLISGSGDCTVRAWNMEGKQLCLVHCAKEQTXS 759
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105
H GH FV+ L +E IS S D T+R W++
Sbjct: 920 HTYCLGHTQFVNCLVYVEEFRVLISGSGDCTVRAWNM 810
>13509
Length = 572
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Frame = +2
Query: 187 FASVGWDGRLKVW---NTNFQIRYTFKAHESN-----------VNHLSISPNGKYIATGG 232
FA +GR+ + TN + +TFK H SN VN +S P ++T G
Sbjct: 239 FALGSIEGRVAIQYVNTTNPKDNFTFKCHRSNGASNNVQDIYAVNDISFHPVHGTLSTVG 418
Query: 233 KDKKLLIWD 241
D + WD
Sbjct: 419 SDGRFSFWD 445
>01249
Length = 1743
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 14/147 (9%)
Frame = -1
Query: 68 PHKALTGHNHFVSDLALSQENCFA--ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA 125
P + + H+ ++ L + A SSS D T +LWD+ +G + V +++ V +
Sbjct: 1236 PGRTINAHSEPITGLHVGCGGPAARVASSSSDGTCKLWDMLSGALLRTMV-YETGVGCLI 1060
Query: 126 FSPDNRQILSAGAEREIKLWNILGECKFS----------SAEK--ENHSDWVSCVRYSPI 173
+L+ +I + G+ S + E+ + HSD V+C+ +S
Sbjct: 1059 MDKQEHFLLAGLDNGDILCSPLFGQISQSEVFVSKHTTKAGERVLQGHSDAVTCLAFS-- 886
Query: 174 MKSANKVQPFAPYFASVGWDGRLKVWN 200
AS +G++ +WN
Sbjct: 885 --------SDGQRLASGSQNGKVIIWN 829
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL 56
+L+GHSD VT + FS D L SGS++ V+IW +
Sbjct: 930 VLQGHSDAVTCLA--FS----SDGQRLASGSQNGKVIIWNM 826
>00764
Length = 1645
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -1
Query: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV---GHQSEVYSVAFSP 128
L H HF+ L Q + F S W K ++L ++K FV + + +S +
Sbjct: 1291 LVSHKHFIERLHA*QHSLFHKSQIWRKQTEPYNL-LSPSHKHFVYR*HNNTLFFSCHSNG 1115
Query: 129 DNRQIL-SAGAEREIKL 144
+NRQIL SA + ++L
Sbjct: 1114 ENRQIL*SATKSKTLRL 1064
>27681
Length = 465
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 262 AFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCT-IEAEPITKAEGQKGKNPQCTSLAWNA 319
A+NP +A G+ D +I+N+ +++ + I K + N TSL WN+
Sbjct: 14 AWNPTNDLLASGSGDSTARIWNMTSETPNNANQLVLRHCIQKGGTEVPSNKDVTSLDWNS 193
Query: 320 LGKKLFAGFTDGVIR 334
G L G DG R
Sbjct: 194 EGTLLATGSYDGYAR 238
>21921
Length = 1341
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -1
Query: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF--NP 265
+K H V + P G+++ +G D + W++ + + G + +A+ NP
Sbjct: 498 VYKGHTGIVRSICPDPTGQWLVSGSDDGTIRFWEVSSGRC-MKTLQVGGCVTSVAWNPNP 322
Query: 266 KLQWVAVGTDQGVKIFN 282
L VA + V + N
Sbjct: 321 SLCVVAATLNTTVLLIN 271
>04395
Length = 1145
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 228 IATGGKDKKLLIWDILNLTYPQREFDA 254
+ATG +D L +WD+ + +P DA
Sbjct: 522 VATGSQDGTLTVWDLRHHRFPMTTLDA 602
>00825
Length = 1821
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 193 DGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
DG L WN Q+ +AH+ V+ ++ +G+Y + G DK + W +
Sbjct: 1808 DGELICWNLPKQQMACRVQAHDGIVHGMAAHSSGQYFFSCGSDKTIKQWSL 1656
>07465
Length = 1103
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 226 KYIATGGKDKKLLIWDILNLTYPQREFDA 254
+ I GG+D +L++WD T Q EFDA
Sbjct: 318 RQIEVGGEDVRLMLWD----TAGQEEFDA 392
>31118
Length = 390
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -2
Query: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSP 172
H +E+ + FSP +L+ + IKL ++ G+ +S H D +R+ P
Sbjct: 383 HSAEIRCIRFSPSAYYMLTCSYDSTIKLTDLQGDLANDIASVVVAKHKDKAITIRWHP 210
>12362
Length = 700
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
+G +Y +AF N Q++S ++EIK W + C
Sbjct: 332 IGSHPPIYQIAFMLGN*QLISKFQKKEIKNWA*IPVC 222
>35695
Length = 1651
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = -1
Query: 41 VLISGSRDKTVMIW---KLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
++IS S DKT+ +W K+ EE L + + ++ + ++++ +
Sbjct: 1540 MVISSSIDKTINVWNFDKILEEVH---------PLDRMERPIETVHMAASSSLCVATTRN 1388
Query: 98 KTLRLWDLRTGTTYKRFVG-HQSEVYSVAF-SPDNRQILSA 136
+T +WDL TG K VG +S S AF + + +L+A
Sbjct: 1387 QT-SVWDLETGRLVKVLVGSSRSNXVSQAFITREGTHVLTA 1268
>07781
Length = 1269
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2
Query: 93 SSSWDKTLRLWDLRTGT----TYKRFVGHQSEVYSVAFSPDNRQILSAGAERE 141
S S D L++WDLR GT T RF V S+ P +L+ G+ E
Sbjct: 740 SGSDDCKLKVWDLRVGTTPVLTNSRFT---MGVTSIQSCPQREHLLAVGSYDE 591
>08355
Length = 498
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -1
Query: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248
+Q+R+ ++N+N SIS +G+ + +++ DI+ LT P
Sbjct: 399 WQVRWQKDDSDNNMNFFSISSDGRIVHWTIVKNEMIYQDIIQLTIP 262
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00339610__3689.m00133Proteasome/cyclosome_repeat_family_prot
ein
(882 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05545 190 1e-63
05493 223 7e-62
32303 37 0.047
>05545
Length = 1952
Score = 190 bits (482), Expect(2) = 1e-63, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Frame = -1
Query: 628 EGIGNEMAHRSLNHILQYCELPVKRAVPLALAILNISNPKINVMDLLLKFSHDDDQELSQ 687
E IG+EM++RS H+L+Y ELP++RAVPLALA++++SNPK+ ++D L KFSHD D E++
Sbjct: 1733 EEIGSEMSYRSFGHLLRYGELPIRRAVPLALALISVSNPKLQILDTLSKFSHDSDPEVAH 1554
Query: 688 RAIFSMGLVGAGTNNSRLADILRNLSSTYKQDSSNKFFIRIAQGLVQMGKGMVTLQPYYS 747
AI +MG+VGAGTNN+RLA +LR L+ + +D +N F +R+AQGL +GKG +TL P++S
Sbjct: 1553 NAIMAMGIVGAGTNNARLAAMLRQLAVYHAKDPNNLFIVRLAQGLTHLGKGTLTLCPFHS 1374
Query: 748 DKFLLNKVGLSGIITVIHSLMDTKS-VFGDQHYTMLYLGLAAYPRMLFTVDENGENKAID 806
D+ L++ V ++G++ + S +D K+ + G HY + L A PRML T DE +
Sbjct: 1373 DRTLMSPVAVAGLMATLISCLDVKNLILGKSHYVLYNLVAAMQPRMLVTFDEELRPLPVS 1194
Query: 807 IR 808
+R
Sbjct: 1193 VR 1188
Score = 72.8 bits (177), Expect(2) = 1e-63, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = -2
Query: 821 KPKKITGFQTHQSPVLISYGERAELGSDEYIPLQATVLENIIIVQKNPDY 870
KPK ITGFQTH +PVL++YGERAEL ++EY+ L ++E +I++KNPDY
Sbjct: 1150 KPKTITGFQTHTTPVLLAYGERAELATEEYLTLTP-IMEGFVILRKNPDY 1004
>05493
Length = 1292
Score = 223 bits (568), Expect(2) = 7e-62, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 195/330 (59%), Gaps = 9/330 (2%)
Frame = -2
Query: 43 IELWVLRIQDVDTNLASVALGQLREEVRKTTTSMTSVPKPFKFLKAHYEGLSKFYESSAP 102
+ + V R+Q+ D L AL LR +R +TTSMTSVPKP KFL+ HY+ + + +E
Sbjct: 1144 LTMLVERLQEPDQRLYKAALESLRVLIRASTTSMTSVPKPLKFLRPHYDTMKQIHEKIRD 965
Query: 103 SQFKKELADFLSVISMTMAERGKQISLRYLKEGTLNDFKNWGYEYLNHLSADIGQTYNQR 162
+ K+ AD +SV+ MTM+E G+ SL Y ++G+ + WG+EY+ HL+ + Q +
Sbjct: 964 QETKEFCADIISVLGMTMSE-GRD-SLHYKQQGSKEEIGAWGHEYVRHLAGQVAQEWQVT 791
Query: 163 IE-KKESTDDLIQLVEDIVPYFVENNAEHDAVDLLLEVDKLQFIKKFVNKENFERISLYL 221
E KE D LI L + I+PY + +NAE +A DL++EV++L ++V+++ + R+ LYL
Sbjct: 790 GEDDKEMKDKLIGLAKQIIPYHMHHNAEAEACDLMMEVERLDLAMEYVDEQAYSRVCLYL 611
Query: 222 QQCCQYCVDQNEMEETLKVNYEIALSLQLYVSALRLAIKLDDIEKIKEVFQSCKDKLILK 281
C Y D E L+ ++ + + ALR A++L+D++ I+++F SCKD ++ K
Sbjct: 610 TSCVAYVPDP-ENTALLRCAVDLYRKFKQFPQALRFALQLNDMKLIEDIFVSCKDLVMQK 434
Query: 282 QLCYLIARQRI---VXXXXXXXXXXXKIASNQHLTDFYLRFAKELDALEPKKPEQVYKSV 338
QL Y++ RQ+I + +I SN L +L A+ELD +EPK PE +YKS
Sbjct: 433 QLAYMLGRQQIFMELNDDIEESDELTEIMSNAPLNGAFLSLARELDIMEPKVPEDIYKSH 254
Query: 339 LEDNKA-----QIDSLNANIADTYVNAFVN 363
LE N+ +DS N+A ++VN FVN
Sbjct: 253 LEPNRTALGANNLDSARQNLASSFVNGFVN 164
Score = 33.9 bits (76), Expect(2) = 7e-62, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3
Query: 381 WIYNLKKTGIAAATSSIGLIDMWDIESGTEHI 412
W+Y K+ G+ +AT+S+GLI +W ++ G I
Sbjct: 117 WLYKNKEHGMLSATASLGLILLWXVDXGLIQI 22
>32303
Length = 1266
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -3
Query: 542 RYFAVAMGLLFLGQQERAEATIECMGIIEHDFAKYCEITIEGCAYAGSGNVLKVQKMLHH 601
R AV + L G+ E A+A +E + + ++ + AY GSGN ++++LH
Sbjct: 847 RGLAVGIALTMYGRMEEADALVESLTRDKDPILRWAGMYTLAMAYCGSGNNQAIRRLLHV 668
Query: 602 CTQKVEED 609
V +D
Sbjct: 667 AVSDVNDD 644
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -3
Query: 463 GAIIGLGMAYAGSANEDLKAIFEPIFSDSSSKLQITAFAALSLGLI 508
GA + LG+A AGS ++ A+ EP+ +D + ++ A A +L LI
Sbjct: 532 GAAMALGIACAGSGLKEAMALLEPMTNDPVNYVRQGALIASALILI 395
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00802450__3808.m00372Mitochondrial_carrier_protein
(291 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07963 236 6e-63
05312 136 4e-60
00983 142 2e-34
23802 102 2e-22
11720 64 9e-11
03676 61 6e-10
06435 60 1e-09
06258 60 1e-09
03275 59 2e-09
13322 59 3e-09
02771 59 3e-09
10615 57 1e-08
17936 56 2e-08
11205 52 2e-07
18977 45 5e-05
33703 43 1e-04
13140 43 2e-04
13320 42 2e-04
00831 42 4e-04
03571 41 6e-04
21153 40 0.001
11735 39 0.003
18662 35 0.033
36831 35 0.042
31492 32 0.39
28571 28 5.4
>07963
Length = 1390
Score = 236 bits (603), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 168/296 (56%), Gaps = 10/296 (3%)
Frame = -1
Query: 2 APPPQPGQKRNPLKAXXXXXXXXXXXXXXTYPTEFVKTKMQLYPHLAKK----GAIQCAK 57
A P P LK T+PTE+VKT++QL + G C
Sbjct: 1330 ATPEVPKSGSKTLKGILAGGITGGLEICITFPTEYVKTQLQLDERSGVQKRYTGPWHCVT 1151
Query: 58 DTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALKNNVFKEKNRVN---TFMAGLGAG 114
T++++GV GLY+GLS LL SIPK+AVRFG+ E K ++ ++ + GLGAG
Sbjct: 1150 ATVNEHGVRGLYRGLSVLLYGSIPKSAVRFGAFEEFKKHLVGADGVLDPHHRLLCGLGAG 971
Query: 115 VCEAIVVVTPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLYKGLTPTIIKQG 174
V EAI VTP ET+KVK I+D+ +P Y+G G+ I +QGL G+Y+GLTPTIIKQG
Sbjct: 970 VMEAIFAVTPMETVKVKFINDQTSAKPHYRGFFHGVSQIVKEQGLHGVYQGLTPTIIKQG 791
Query: 175 SNQGIRFLVYEDSKKLLKSVG---TTDXXXXXXXXXXXXXXXXXXNTPVDVIKTLMQGLE 231
SNQ IRF V E K + NTPVDV+KT +QGL+
Sbjct: 790 SNQAIRFFVMETLKDWYRGDDKEMRVPTLIVGLFGATAGAASVFGNTPVDVVKTRLQGLD 611
Query: 232 AHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYEQITKAINYVW 287
AHKYKN+LDC ++ K+EG + YKGT+PRLSRV LDVAITF +Y+ N VW
Sbjct: 610 AHKYKNTLDCAMKIFKHEGPKAFYKGTVPRLSRVTLDVAITFMIYDNFMHFFNKVW 443
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Frame = -1
Query: 31 TYPTEFVKTKMQLYPHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSN 90
T +F+ + PH +G + + G+ G+Y+GL+ + A+RF
Sbjct: 934 TVKVKFINDQTSAKPHY--RGFFHGVSQIVKEQGLHGVYQGLTPTIIKQGSNQAIRFFVM 761
Query: 91 EALKNNVFKEKN--RVNTFMAGLGAGVCEAIVVV--TPAETLKVKLIHDKLLEQPKYKGM 146
E LK+ + RV T + GL A V TP + +K +L + L+ KYK
Sbjct: 760 ETLKDWYRGDDKEMRVPTLIVGLFGATAGAASVFGNTPVDVVKTRL---QGLDAHKYKNT 590
Query: 147 IDGIKTIASQQGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKSVGTT 197
+D I +G YKG P + + + I F++Y++ V T
Sbjct: 589 LDCAMKIFKHEGPKAFYKGTVPRLSRVTLDVAITFMIYDNFMHFFNKVWKT 437
>05312
Length = 1032
Score = 136 bits (342), Expect(3) = 4e-60, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 89/130 (68%), Gaps = 3/130 (2%)
Frame = -2
Query: 55 CAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALKNNVFKEKNRVNT---FMAGL 111
C KD + G GLY+GLS LL SIPK+A RFG+ E L++ +++ + GL
Sbjct: 932 CQKDD-KERGFFGLYRGLSVLLYGSIPKSAARFGAFEFLRSKAVGPSGQLSNSGKLLCGL 756
Query: 112 GAGVCEAIVVVTPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLYKGLTPTII 171
GAG+CEAIV VTP ET+KVK I+D+ PK+KG G+K I +G+SG+YKGLTPTI+
Sbjct: 755 GAGICEAIVAVTPMETIKVKFINDQRSANPKFKGFAHGVKEIVKAEGISGIYKGLTPTIM 576
Query: 172 KQGSNQGIRF 181
KQGSNQ IRF
Sbjct: 575 KQGSNQAIRF 546
Score = 102 bits (254), Expect(3) = 4e-60, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = -3
Query: 217 NTPVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLY 276
NTP+DV+KT MQGLEA +YKN+ DC Q+LKNEG+ YKGT+PRL RV LDVAITF +Y
Sbjct: 433 NTPLDVVKTRMQGLEAARYKNTADCAMQILKNEGLPAFYKGTVPRLGRVCLDVAITFMIY 254
Query: 277 EQITKAINYVWPE 289
+ N +W E
Sbjct: 253 DSFMDLFNIIWAE 215
Score = 32.0 bits (71), Expect(3) = 4e-60, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -3
Query: 31 TYPTEFVKTKMQLYPHLAKK---GAIQCAKDTI 60
TYPTE+VKT++QL AKK G C K TI
Sbjct: 1015 TYPTEYVKTQLQLDEKGAKKQYNGIADCVKKTI 917
Score = 35.8 bits (81), Expect(2) = 2e-04, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -3
Query: 123 TPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLYKGLTPTIIKQGSNQGIRFL 182
TP + +K ++ + LE +YK D I +GL YKG P + + + I F+
Sbjct: 430 TPLDVVKTRM---QGLEAARYKNTADCAMQILKNEGLPAFYKGTVPRLGRVCLDVAITFM 260
Query: 183 VYEDSKKLLKSV 194
+Y+ L +
Sbjct: 259 IYDSFMDLFNII 224
Score = 25.8 bits (55), Expect(2) = 2e-04, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -2
Query: 31 TYPTEFVKTKMQLYPHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRF 87
T +F+ + P KG K+ + G+ G+YKGL+ + A+RF
Sbjct: 710 TIKVKFINDQRSANPKF--KGFAHGVKEIVKAEGISGIYKGLTPTIMKQGSNQAIRF 546
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Frame = -2
Query: 156 QQGLSGLYKGLTPTIIKQGSNQGIRFLVYE--DSKKLLKSVGTTDXXXXXXXXXXXXXXX 213
++G GLY+GL+ + RF +E SK + S ++
Sbjct: 914 ERGFFGLYRGLSVLLYGSIPKSAARFGAFEFLRSKAVGPSGQLSNSGKLLCGLGAGICEA 735
Query: 214 XXXNTPVDVIKTLM---QGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVA 270
TP++ IK Q K+K +++K EG+ G+YKG P + + + A
Sbjct: 734 IVAVTPMETIKVKFINDQRSANPKFKGFAHGVKEIVKAEGISGIYKGLTPTIMKQGSNQA 555
Query: 271 ITFT 274
I F
Sbjct: 554 IRFC 543
>00983
Length = 819
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Frame = -2
Query: 141 PKYKGMIDGIKTIASQQGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKSVGTTD-- 198
P Y+G GI I +QGL G+Y+G+ PTI+KQGSNQ IRF V E K+ +
Sbjct: 815 PIYRGFAHGISQIIKEQGLHGVYQGVAPTIMKQGSNQAIRFFVMETMKEWYRGDDKNKKV 636
Query: 199 -XXXXXXXXXXXXXXXXXXNTPVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKG 257
NTP+DV+KT +QGL+AHKYK ++DC +++KNEG R YKG
Sbjct: 635 PTLLTGAFGATAGAASVFGNTPIDVVKTRLQGLDAHKYKGTIDCAVKIMKNEGPRAFYKG 456
Query: 258 TLPRLSRVVLDVAITFTLYEQITKAINYVW 287
TLPRLSRV LDVAITF +Y+ N W
Sbjct: 455 TLPRLSRVTLDVAITFMIYDNFMHIFNQFW 366
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Frame = -2
Query: 50 KGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALKNNVF-KEKNR-VNTF 107
+G I + G+ G+Y+G++ + A+RF E +K +KN+ V T
Sbjct: 806 RGFAHGISQIIKEQGLHGVYQGVAPTIMKQGSNQAIRFFVMETMKEWYRGDDKNKKVPTL 627
Query: 108 MAGLGAGVCEAIVVV--TPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLYKG 165
+ G A V TP + +K +L + L+ KYKG ID I +G YKG
Sbjct: 626 LTGAFGATAGAASVFGNTPIDVVKTRL---QGLDAHKYKGTIDCAVKIMKNEGPRAFYKG 456
Query: 166 LTPTIIKQGSNQGIRFLVYED 186
P + + + I F++Y++
Sbjct: 455 TLPRLSRVTLDVAITFMIYDN 393
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -2
Query: 33 PTEFVKTKMQLYPHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRF 87
P + VKT++Q KG I CA + G YKG L+ A+ F
Sbjct: 572 PIDVVKTRLQGLDAHKYKGTIDCAVKIMKNEGPRAFYKGTLPRLSRVTLDVAITF 408
>23802
Length = 1077
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 55/71 (77%)
Frame = +2
Query: 217 NTPVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLY 276
NTPVDV+KT +QGL+AHKYKN+LDC ++ K+EG + YKGT+PRLSRV LDVAITF +Y
Sbjct: 56 NTPVDVVKTRLQGLDAHKYKNTLDCAMKIFKHEGPKAFYKGTVPRLSRVTLDVAITFMIY 235
Query: 277 EQITKAINYVW 287
+ N VW
Sbjct: 236 DNFMHFFNKVW 268
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +2
Query: 106 TFMAGLGAGVCEAIVVV--TPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLY 163
T + GL A V TP + +K +L + L+ KYK +D I +G Y
Sbjct: 2 TLIVGLFGATAGAASVFGNTPVDVVKTRL---QGLDAHKYKNTLDCAMKIFKHEGPKAFY 172
Query: 164 KGLTPTIIKQGSNQGIRFLVYEDSKKLLKSVGTT 197
KG P + + + I F++Y++ V T
Sbjct: 173 KGTVPRLSRVTLDVAITFMIYDNFMHFFNKVWKT 274
>11720
Length = 504
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Frame = +1
Query: 113 AGVCEAIVVVTPAETLKVKLIHDK---LLEQPKYKGMIDGIKTIASQQGLSGLYKGLTPT 169
+G + +V+ P + +K++ ++ +P Y+G++ +++I + GL GLY+G+TP
Sbjct: 4 SGGVVSTLVLHPLDLVKIRFQVNEGHGTAGRPAYRGIVHAMRSIVANSGLXGLYQGVTPN 183
Query: 170 IIKQGSNQGIRFLVYEDSKKLL------KSVGTTDXXXXXXXXXXXXXXXXXXNTPVDVI 223
+ G + G+ F Y K + K++G T+ P+ V
Sbjct: 184 VWGAGLSWGLYFFFYNSMKTWMQDGDGKKNLGATN---HMLIASAAGFSTLALTNPIWVT 354
Query: 224 KT---LMQGLEA------HKYKNSLDCFFQVLKNEGVRGLYKGTLP 260
KT L EA +Y+ D ++ K EGVRGLYKG +P
Sbjct: 355 KTRLCLQYESEAAASKAERQYRGMADALVKIYKVEGVRGLYKGFIP 492
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 21/161 (13%)
Frame = +1
Query: 32 YPTEFVKTKMQLYP------HLAKKGAIQCAKDTIHQYGVVGLYKG---------LSALL 76
+P + VK + Q+ A +G + + + G+ GLY+G LS L
Sbjct: 34 HPLDLVKIRFQVNEGHGTAGRPAYRGIVHAMRSIVANSGLXGLYQGVTPNVWGAGLSWGL 213
Query: 77 TFSIPKTAVRFGSNEALKNNVFKEKNRVNTFMAGLGAGVCEAIVVVTPAETLKVKLIHDK 136
F + + + K N+ + + AG + + P K +L
Sbjct: 214 YFFFYNSMKTWMQDGDGKKNLGATNHMLIASAAGF-----STLALTNPIWVTKTRLCLQY 378
Query: 137 LLE------QPKYKGMIDGIKTIASQQGLSGLYKGLTPTII 171
E + +Y+GM D + I +G+ GLYKG P I+
Sbjct: 379 ESEAAASKAERQYRGMADALVKIYKVEGVRGLYKGFIPGIL 501
>03676
Length = 2457
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 9/153 (5%)
Frame = +2
Query: 138 LEQPKYKGMIDGIKTIASQQGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKS---- 193
+ +Y+G ID I ++G+ GLYKG P ++ S+ ++F+ YE+ K L
Sbjct: 752 VSHAQYRGTIDAFTKIFREEGVRGLYKGFVPGMLGI-SHGALQFMAYEEMKTLYNQYRKQ 928
Query: 194 -----VGTTDXXXXXXXXXXXXXXXXXXNTPVDVIKTLMQGLEAHKYKNSLDCFFQVLKN 248
+G+ + P VI++ +Q H Y +D Q+++
Sbjct: 929 PLDTKLGSGEYVTFAAVSKMFSACLTY---PYQVIRSRLQDQHRH-YNGVIDVCQQIIRK 1096
Query: 249 EGVRGLYKGTLPRLSRVVLDVAITFTLYEQITK 281
E RG YKG + V ++ I F +YE +T
Sbjct: 1097ESYRGFYKGFTAYMLHVTPNICIVFLIYELLTN 1195
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Frame = +2
Query: 46 HLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALKNNVFKEKNRVN 105
H +G I + GV GLYKG + I A++F + E +K + + +
Sbjct: 758 HAQYRGTIDAFTKIFREEGVRGLYKGFVPGM-LGISHGALQFMAYEEMKTLYNQYRKQPL 934
Query: 106 TFMAGLGAGVCEAIV--VVTPAETLKVKLIHDKLLEQPK-YKGMIDGIKTIASQQGLSGL 162
G G V A V + + T ++I +L +Q + Y G+ID + I ++ G
Sbjct: 935 DTKLGSGEYVTFAAVSKMFSACLTYPYQVIRSRLQDQHRHYNGVIDVCQQIIRKESYRGF 1114
Query: 163 YKGLTPTIIKQGSNQGIRFLVYE 185
YKG T ++ N I FL+YE
Sbjct: 1115YKGFTAYMLHVTPNICIVFLIYE 1183
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +2
Query: 234 KYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYEQITKAIN 284
+Y+ ++D F ++ + EGVRGLYKG +P + + A+ F YE++ N
Sbjct: 764 QYRGTIDAFTKIFREEGVRGLYKGFVPGMLGISHG-ALQFMAYEEMKTLYN 913
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +1
Query: 103 RVNTFMAGLGAGVCEAIVVVTPAETLKVKLIHDK---LLEQPKYKGMIDGIKTIASQQGL 159
R AG+ GV + +V+ P E +KV+ ++ +P Y+G+ +++I + +G
Sbjct: 319 RFEHLYAGVSGGVV-STLVLHPLELVKVRFQVNEGNGSSGRPAYQGIGHAMRSIFNNRGF 495
Query: 160 SGLYKGLTPTI 170
GLY+G+TP +
Sbjct: 496 VGLYQGVTPNV 528
>06435
Length = 1099
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 13/245 (5%)
Frame = +1
Query: 50 KGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALK-----NNVFKEKNRV 104
K A++ ++ G L++G +A + +P A+++ ++E K N+ K
Sbjct: 91 KSALRFLYHSLRTEGFFALWRGNTATMARIVPYAAIQYCAHEQYKIILNPNHXKKHLPPG 270
Query: 105 NTFMAGLGAGVCEAIVVVTPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLYK 164
F+AG AGV ++ P + ++ ++ + + Y + + I ++GL +Y+
Sbjct: 271 RRFLAGSMAGVT-SVAFTYPLDLVRARM---AVTAKDMYHNIFEVFLKIYREEGLRTVYR 438
Query: 165 GLTPTIIKQGSNQGIRFLVYEDSKKLL--KSVGTT-DXXXXXXXXXXXXXXXXXXNTPVD 221
G TPTI+ G F YE KKL K G + P+D
Sbjct: 439 GFTPTILGSIPYSGTSFFTYETLKKLHAEKFKGRDPSAIERLAFGACAGLLGQSASYPLD 618
Query: 222 VIKTLMQ--GLEAH--KYKNSLDCFFQVLKNEG-VRGLYKGTLPRLSRVVLDVAITFTLY 276
+++ MQ G+ H Y + L QV+ EG ++GLYKG + + V ++F +
Sbjct: 619 IVRRRMQTAGITGHAQDYTSILGTARQVVAEEGFIQGLYKGLSMNWIKGPIAVGVSFMTF 798
Query: 277 EQITK 281
+ + +
Sbjct: 799 DLVLR 813
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
Frame = +1
Query: 31 TYPTEFVKTKMQLYPHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSN 90
TYP + V+ +M + + + G+ +Y+G + + SIP + F +
Sbjct: 319 TYPLDLVRARMAVTAKDMYHNIFEVFLKIYREEGLRTVYRGFTPTILGSIPYSGTSFFTY 498
Query: 91 EALKN-NVFKEKNRVNTFMAGLGAGVCEAIV---VVTPAETLKVKLIHDKLLEQPK-YKG 145
E LK + K K R + + L G C ++ P + ++ ++ + + Y
Sbjct: 499 ETLKKLHAEKFKGRDPSAIERLAFGACAGLLGQSASYPLDIVRRRMQTAGITGHAQDYTS 678
Query: 146 MIDGIKTIASQQG-LSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKSV 194
++ + + +++G + GLYKGL+ IK G+ F+ ++ + L+ +
Sbjct: 679 ILGTARQVVAEEGFIQGLYKGLSMNWIKGPIAVGVSFMTFDLVLRWLRRL 828
>06258
Length = 1005
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Frame = +1
Query: 56 AKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALKNNVFKEKNRVNT----FMAGL 111
A + I G GLYKG A L +P +A+ F + A F ++N N+ ++
Sbjct: 28 AINVIKDLGFFGLYKGARACLLRDVPFSAIYFPAY-AHNKKYFADENGYNSPGTLLLSAT 204
Query: 112 GAGVCEAIVVVTPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLYKGLTPTII 171
AG+ A TPA+ +K +L + Q YKG++D + I ++GL+ +KG +
Sbjct: 205 IAGM-PAAFFPTPADVIKTRLQVAERAGQTTYKGIMDCCRKITQEEGLAAFWKGSAARVF 381
Query: 172 KQGSNQGIRFLVYEDSKKLL 191
+ G+ L YE ++L
Sbjct: 382 RSSPQFGVTLLTYELLQRLF 441
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 4/128 (3%)
Frame = +1
Query: 158 GLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKSV-GTTDXXXXXXXXXXXXXXXXXX 216
G GLYKG +++ I F Y +KK G
Sbjct: 52 GFFGLYKGARACLLRDVPFSAIYFPAYAHNKKYFADENGYNSPGTLLLSATIAGMPAAFF 231
Query: 217 NTPVDVIKTLMQGLEAH---KYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITF 273
TP DVIKT +Q E YK +DC ++ + EG+ +KG+ R+ R +T
Sbjct: 232 PTPADVIKTRLQVAERAGQTTYKGIMDCCRKITQEEGLAAFWKGSAARVFRSSPQFGVTL 411
Query: 274 TLYEQITK 281
YE + +
Sbjct: 412 LTYELLQR 435
>03275
Length = 3821
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 7/178 (3%)
Frame = +1
Query: 111 LGAGVCE---AIVVVTPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLYKGLT 167
LG G+ A ++ P +K +L +Y+GM + + I ++G+ GLY GL+
Sbjct: 3166 LGMGMTARTMAACLILPITVIKTRLESGSF----QYQGMANALTLIYKREGIRGLYSGLS 3333
Query: 168 PTIIKQGSNQGIRFLVYEDSKKL----LKSVGTTDXXXXXXXXXXXXXXXXXXNTPVDVI 223
PT+++ G+ + Y K + G + P DVI
Sbjct: 3334 PTLLRDVPFSGLYLMFYSKLKMYNQPSMFGCG-FEPLVDFCNAVIGGALASFVTQPADVI 3510
Query: 224 KTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYEQITK 281
KT MQ L ++++ V + G+ G ++G +PR R A+ +T++E+IT+
Sbjct: 3511 KTNMQ-LYPRQHRHLKQVIVYVYQKRGMYGFWRGMVPRTLRRTTMTALAWTVFEEITR 3681
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Frame = +1
Query: 64 GVVGLYKGLSALLTFSIPKTAVRFGSNEALKNNVFKEKNRVNTFMAGLGAGV--CEAIV- 120
G+ GLY GLS L +P F + + K N+ + F G V C A++
Sbjct: 3304 GIRGLYSGLSPTLLRDVP-----FSGLYLMFYSKLKMYNQPSMFGCGFEPLVDFCNAVIG 3468
Query: 121 ------VVTPAETLKVKLIHDKLLEQPKYKGMIDGIKTIASQQGLSGLYKGLTPTIIKQG 174
V PA+ +K + L +++ + I + ++G+ G ++G+ P +++
Sbjct: 3469 GALASFVTQPADVIKTNM----QLYPRQHRHLKQVIVYVYQKRGMYGFWRGMVPRTLRRT 3636
Query: 175 SNQGIRFLVYED 186
+ + + V+E+
Sbjct: 3637 TMTALAWTVFEE 3672
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +1
Query: 31 TYPTEFVKTKMQLYPHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSN 90
T P + +KT MQLYP + Q + G+ G ++G+ +P+T +R +
Sbjct: 3490 TQPADVIKTNMQLYPR-QHRHLKQVIVYVYQKRGMYGFWRGM-------VPRT-LRRTTM 3642
Query: 91 EALKNNVFKEKNR 103
AL VF+E R
Sbjct: 3643 TALAWTVFEEITR 3681
>13322
Length = 1014
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 29/233 (12%)
Frame = -1
Query: 54 QCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALKNNVFKEKNRVN---TFMAG 110
CA T G G+YKG L P+ A++ N+ ++ + ++ ++G
Sbjct: 999 DCALKTFRNEGFFGMYKGSGVNLLLITPEKAIKLVGNDFFRHILRNNSGQLTLPREILSG 820
Query: 111 LGAGVCEAIVVVTPAETLKVKLI---HDKLLEQPKYKGMIDGIK-----------TIA-- 154
GAG+C+ I + TP E LK+++ L+ G +G+K TIA
Sbjct: 819 AGAGLCQ-ITITTPMELLKIQMQDAGRSARLDMAA-SGSGNGVKVGKPAVKMSATTIALN 646
Query: 155 --SQQGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKSVGTTDXXXXXXXXXXXXXX 212
++G+ GLY+G T ++ + I F ++ + KL K +D
Sbjct: 645 LIRKRGILGLYQGCGATALRDITFSAIYFPLFANLNKLGKRREGSDKAVFYHSFISGCIA 466
Query: 213 XXXXN---TPVDVIKTLMQGL-----EAHKYKNSLDCFFQVLKNEGVRGLYKG 257
+ P+DV+KT +Q L E H Y + CF V+ EG + KG
Sbjct: 465 GCTASFLVNPMDVVKTRLQTLHKGAGEQH-YTGIVHCFRTVMTQEGPKAFLKG 310
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 235 YKNSLDCFFQVLKNEGVRGLYKGT 258
YK+ DC + +NEG G+YKG+
Sbjct: 1014 YKSLPDCALKTFRNEGFFGMYKGS 943
>02771
Length = 1591
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 14/236 (5%)
Frame = -1
Query: 50 KGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALK-------NNVFKEKN 102
KG I C T GV+ ++G A P A+ F + +K + K
Sbjct: 1306 KGVIDCTVRTFRTEGVLPFWRGNLANCLRYFPTQALNFAFKDKVKAMFKSSPGESYVAKF 1127
Query: 103 RVNTFMAGLGAGVCEAIVVVTPAETLKVKLIHD-----KLLEQPKYKGMIDGIKTIASQQ 157
N F G+ + ++ V + + +L +D K + ++ G+ID
Sbjct: 1126 SKNIFSGGVAGAL--SLCFVYSLDYARTRLANDAKSAGKGGGERQFNGLIDVYTKTLKSD 953
Query: 158 GLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKSVGTTDXXXXXXXXXXXXXXXXXXN 217
G+ GLY+G + + +G F +Y+ K ++ + +
Sbjct: 952 GIVGLYRGFVISCVGIVVYRGFYFGLYDSLKPIMLG-DDANVFMSFCLGYAVTVSSGLLS 776
Query: 218 TPVDVIK--TLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAI 271
P+D I+ +M +A KYK S+DC Q++KNEG + KG + R V +
Sbjct: 775 YPIDTIRRRMMMTSGQAVKYKGSMDCAMQIIKNEGFMSMMKGAGANILRGVAGAGV 608
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = -1
Query: 218 TPVDVIKTLMQ--------GLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDV 269
P++ IK L+Q G + YK +DC + + EGV ++G L R
Sbjct: 1384 APIERIKLLVQNQDEMIKAGRLSEPYKGVIDCTVRTFRTEGVLPFWRGNLANCLRYFPTQ 1205
Query: 270 AITFTLYEQI 279
A+ F +++
Sbjct: 1204 ALNFAFKDKV 1175
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 23/190 (12%)
Frame = -1
Query: 113 AGVCEAIVVVTPAETLKVKLI---HDKLLEQPK----YKGMIDGIKTIASQQGLSGLYKG 165
+GV I A ++KL+ D++++ + YKG+ID +G+ ++G
Sbjct: 1420 SGVAAVISKTAAAPIERIKLLVQNQDEMIKAGRLSEPYKGVIDCTVRTFRTEGVLPFWRG 1241
Query: 166 LTPTIIKQGSNQGIRFLVYEDSKKLLKSV----------------GTTDXXXXXXXXXXX 209
++ Q + F + K + KS G
Sbjct: 1240 NLANCLRYFPTQALNFAFKDKVKAMFKSSPGESYVAKFSKNIFSGGVAGALSLCFVYSLD 1061
Query: 210 XXXXXXXNTPVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDV 269
N K+ +G ++ +D + + LK++G+ GLY+G + +V+
Sbjct: 1060 YARTRLANDA----KSAGKGGGERQFNGLIDVYTKTLKSDGIVGLYRGFVISCVGIVVYR 893
Query: 270 AITFTLYEQI 279
F LY+ +
Sbjct: 892 GFYFGLYDSL 863
>10615
Length = 1795
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 15/237 (6%)
Frame = +3
Query: 50 KGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEALKNNVFKE--------K 101
KG I C T G++ ++G A P A+ F + +K +FK K
Sbjct: 357 KGVIDCTVRTFRTEGILPFWRGNLANCLRYFPTQALNFAFKDKVKA-MFKTSPGESYVVK 533
Query: 102 NRVNTFMAGLGAGVCEAIVVVTPAETLKVKLIHD-----KLLEQPKYKGMIDGIKTIASQ 156
N F G+ + ++ V + + +L +D K + ++ G+ID
Sbjct: 534 FSKNIFSGGVAGAL--SLCFVYSLDYARTRLANDAKSAGKGGGERQFNGLIDVYTKTLKS 707
Query: 157 QGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKSVGTTDXXXXXXXXXXXXXXXXXX 216
G GLY+G + + +G F +Y+ K ++ +
Sbjct: 708 DGFVGLYRGFVISCVGIVVYRGFYFGLYDSLKPIMLG-DDANVFMSFCLGYAVTVSSGLL 884
Query: 217 NTPVDVIK--TLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAI 271
+ P+D I+ +M +A KYK S+DC Q++KNEG + KG + R V +
Sbjct: 885 SYPIDTIRRRMMMTSGQAVKYKGSMDCAMQIIKNEGFMSMMKGAGANILRGVAGAGV 1055
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +3
Query: 218 TPVDVIKTLMQ--------GLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDV 269
P++ IK L+Q G + YK +DC + + EG+ ++G L R
Sbjct: 279 APIERIKLLVQNQDEMIKAGRLSEPYKGVIDCTVRTFRTEGILPFWRGNLANCLRYFPTQ 458
Query: 270 AITFTLYEQI 279
A+ F +++
Sbjct: 459 ALNFAFKDKV 488
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 23/190 (12%)
Frame = +3
Query: 113 AGVCEAIVVVTPAETLKVKLI---HDKLLEQPK----YKGMIDGIKTIASQQGLSGLYKG 165
+GV I A ++KL+ D++++ + YKG+ID +G+ ++G
Sbjct: 243 SGVAAVISKTAAAPIERIKLLVQNQDEMIKAGRLSEPYKGVIDCTVRTFRTEGILPFWRG 422
Query: 166 LTPTIIKQGSNQGIRFLVYEDSKKLLK----------------SVGTTDXXXXXXXXXXX 209
++ Q + F + K + K S G
Sbjct: 423 NLANCLRYFPTQALNFAFKDKVKAMFKTSPGESYVVKFSKNIFSGGVAGALSLCFVYSLD 602
Query: 210 XXXXXXXNTPVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDV 269
N K+ +G ++ +D + + LK++G GLY+G + +V+
Sbjct: 603 YARTRLANDA----KSAGKGGGERQFNGLIDVYTKTLKSDGFVGLYRGFVISCVGIVVYR 770
Query: 270 AITFTLYEQI 279
F LY+ +
Sbjct: 771 GFYFGLYDSL 800
>17936
Length = 447
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Frame = -1
Query: 219 PVDVIKTLMQGLEAHKY------KNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAIT 272
P+D++KT MQ Y KNS DCF +V+++EGVRGLY+G P+L V + AI
Sbjct: 243 PIDLVKTRMQNQRTGSYVGELMYKNSFDCFKKVIRHEGVRGLYRGLAPQLVGVAPEKAIK 64
Query: 273 FTL 275
T+
Sbjct: 63 LTM 55
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = -1
Query: 32 YPTEFVKTKMQ------LYPHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAV 85
YP + VKT+MQ L K + C K I GV GLY+GL+ L P+ A+
Sbjct: 246 YPIDLVKTRMQNQRTGSYVGELMYKNSFDCFKKVIRHEGVRGLYRGLAPQLVGVAPEKAI 67
Query: 86 RFGSNEALKNNVFKE 100
+ N+ +++ + ++
Sbjct: 66 KLTMNDLMRDKLVRK 22
>11205
Length = 883
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Frame = -1
Query: 33 PTEFVKTKMQLYPHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNEA 92
P + VK +MQ+Y + ++QC + + GV Y+ + L ++P + +F E
Sbjct: 832 PADVVKQRMQVYGS-GYRTSLQCVSSILQKEGVWAFYRSYTTQLLMNVPFQSTQFVIYEI 656
Query: 93 LKNNVFKEK--NRVNTFMAGLGAGVCEAIVVVTPAETLKVKLIHDKLLEQPKY---KGMI 147
+++ + K++ N V T M A + P + K L + + GM
Sbjct: 655 MQDVLNKDRAYNPV-THMCSGAVAGAVAASITMPLDVCKTLLNTQETCARTNLTYINGMF 479
Query: 148 DGIKTIASQQGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLLKSVGTTD 198
+TI +G G ++GLT ++ Q + I + VYE K ++ D
Sbjct: 478 SAFRTIYEFRGSHGFFRGLTARVVYQMPSTAISWSVYEFFKFMMTHRNHAD 326
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -1
Query: 219 PVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYEQ 278
P DV+K MQ + Y+ SL C +L+ EGV Y+ +L V + F +YE
Sbjct: 832 PADVVKQRMQ-VYGSGYRTSLQCVSSILQKEGVWAFYRSYTTQLLMNVPFQSTQFVIYEI 656
Query: 279 ITKAIN 284
+ +N
Sbjct: 655 MQDVLN 638
>18977
Length = 497
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = -3
Query: 217 NTPVDVIKTLMQGLEA----HKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAIT 272
+ PVD+ KT +Q ++ +YK +LD +V++NEG L+KG P +R+ +T
Sbjct: 348 SMPVDIAKTRIQNMKMIDGKPEYKGALDVLGKVIRNEGFFSLWKGFTPYYARLGPHTVLT 169
Query: 273 FTLYEQITKA 282
F EQ+ A
Sbjct: 168 FIFLEQMNIA 139
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 124 PAETLKVKLIHDKLLE-QPKYKGMIDGIKTIASQQGLSGLYKGLTPTIIKQGSNQGIRFL 182
P + K ++ + K+++ +P+YKG +D + + +G L+KG TP + G + + F+
Sbjct: 342 PVDIAKTRIQNMKMIDGKPEYKGALDVLGKVIRNEGFFSLWKGFTPYYARLGPHTVLTFI 163
Query: 183 VYE 185
E
Sbjct: 162 FLE 154
>33703
Length = 421
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Frame = -2
Query: 218 TPVDVIKTLM--------QGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDV 269
TP DV+KT + +GL+ Y S+DC + +K EG LYKG LP +R+
Sbjct: 303 TPADVVKTRIMNQPTKDGKGLQ---YSGSVDCLVKTVKKEGFLALYKGLLPIWARMAPWS 133
Query: 270 AITFTLYEQITK 281
+ + YE++ K
Sbjct: 132 LVFWLSYEEVRK 97
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Frame = -2
Query: 93 LKNNVFKEKNRVNTFMAGLGAGVCEAIVVVTPAETLKVKLIHDKLLEQP-------KYKG 145
L+N ++ N V +A + +G+ A++ TPA+ +K ++++ QP +Y G
Sbjct: 387 LRNTTLQD-NYVTHTLASICSGLVAALMG-TPADVVKTRIMN-----QPTKDGKGLQYSG 229
Query: 146 MIDGIKTIASQQGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKL 190
+D + ++G LYKGL P + + +L YE+ +KL
Sbjct: 228 SVDCLVKTVKKEGFLALYKGLLPIWARMAPWSLVFWLSYEEVRKL 94
>13140
Length = 1844
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Frame = -1
Query: 33 PTEFVKTKMQLYPHLAKKGAI-QCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNE 91
P + VK ++Q+ P K G I + T+ + GV L KG + L + +FG E
Sbjct: 1379 PLDLVKCRIQVDP--GKYGNIVNGFRVTLAEEGVRALGKGWAPTLVGYSMQGVGKFGFYE 1206
Query: 92 ALK---NNVFKEKN----RVNTFMAGLGAGVCEAIVVVTPAETLKVKLIHDKLLEQPKYK 144
A K + E+N R + ++A + A + + P E +KV++ QP +
Sbjct: 1205 AFKILYGGMLGEENCYLWRTSLYLAASASAEFFADIALCPMEAVKVRI-----QTQPGWS 1041
Query: 145 GMI-DGIKTIASQQGLSGLYKGLTPTIIKQ 173
+ +G I ++GLSG YKGL P +Q
Sbjct: 1040 TTLREGAPRILREEGLSGFYKGLVPLWARQ 951
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 242 FFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYEQITKAIN 284
F Q+ K G G++KG PR+ + A+ + +Y+ + A
Sbjct: 736 FVQIAKQLGFMGMWKGLFPRIIMIGTLTALQWFIYDSVKVAFR 608
>13320
Length = 1694
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%)
Frame = -2
Query: 235 YKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYEQITK 281
Y +SLDC Q +K EGV LYKG +P R+ I F YE + K
Sbjct: 1582 YSSSLDCLAQTVKTEGVMALYKGFIPNWLRLGPWNIIFFMTYEHLKK 1442
>00831
Length = 2468
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -2
Query: 219 PVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYEQ 278
P+DV+KT M Y + + C + KN G G +KG +P R+ +TF +EQ
Sbjct: 2266 PLDVMKTRMMNAAPGTYTSLMHCAMDIAKN-GPMGFFKGFIPAFVRLGPHTVLTFVFFEQ 2090
Query: 279 I 279
I
Sbjct: 2089 I 2087
>03571
Length = 1155
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 14/180 (7%)
Frame = +3
Query: 119 IVVVTPAETLKVKL---IHDKLL------EQPKYKGMIDGIKTIASQQGLSGLYKGLTPT 169
+++ TP + +KV L I ++ + YKG ++ K I G G+++G
Sbjct: 315 LMLATPIDVVKVTLQSQIEHEICPTTGVHQSTFYKGPLEATKEIFRTCGARGMFRGFWTQ 494
Query: 170 IIKQGSNQGIRFLVYE----DSKKLLKSVGTTDXXXXXXXXXXXXXXXXXXNTPVDVIKT 225
+ + + YE + + L SV + P DV+K+
Sbjct: 495 LARDSPANAVYMSFYEVSAYEGSEYLPSVPSPVINFVSGGMAGVISWMLIM--PFDVVKS 668
Query: 226 LMQGLEAHK-YKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYEQITKAIN 284
+Q + K Y DC + + EG Y+G+L R A+T +Y ++ A+N
Sbjct: 669 RIQADTSKKHYSGFWDCTKKAYRQEGWTVFYRGSLAVCLRAFPVNAVTLMVYTEVLIALN 848
>21153
Length = 564
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 9/173 (5%)
Frame = +1
Query: 64 GVVGLYKGLSALLTFSIPKTAVRFGSNEALK----NNVFKEKNRVNTFMAGL---GAGVC 116
G V ++G A + P A+ F + K +NV K+ F L GA
Sbjct: 22 GFVSFWRGNLANVIRYFPTQALNFAFKDKYKKIFLDNVDKKTQFWRYFAGNLASGGAAGA 201
Query: 117 EAIVVVTPAETLKVKLIHD--KLLEQPKYKGMIDGIKTIASQQGLSGLYKGLTPTIIKQG 174
++ V P + + +L D K + ++KG+ D + I+ G+ GLY+G ++
Sbjct: 202 TSLCFVYPLDFARTRLAADVGKGANEREFKGLGDCLVKISKSDGIKGLYQGFNVSVQGII 381
Query: 175 SNQGIRFLVYEDSKKLLKSVGTTDXXXXXXXXXXXXXXXXXXNTPVDVIKTLM 227
+ F +Y+ +K +L T + P D ++ M
Sbjct: 382 IYRAAYFGIYDTAKGMLPDPKNTHIFVSWMIAQTVTAVAGFASYPFDTVRRRM 540
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Frame = +1
Query: 156 QQGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKL-LKSVGTTDXXXXXXXXXXXXXXXX 214
+QG ++G +I+ Q + F + KK+ L +V
Sbjct: 16 EQGFVSFWRGNLANVIRYFPTQALNFAFKDKYKKIFLDNVDKKTQFWRYFAGNLASGGAA 195
Query: 215 XXNT-----PVDVIKTLM-----QGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSR 264
+ P+D +T + +G ++K DC ++ K++G++GLY+G +
Sbjct: 196 GATSLCFVYPLDFARTRLAADVGKGANEREFKGLGDCLVKISKSDGIKGLYQGFNVSVQG 375
Query: 265 VVLDVAITFTLYE 277
+++ A F +Y+
Sbjct: 376 IIIYRAAYFGIYD 414
>11735
Length = 1194
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 219 PVDVIKTLMQGLEAH-KYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVVLDVAITFTLYE 277
P DV+K MQ A K N L F ++ EGV GL++G P R + + Y+
Sbjct: 26 PTDVLKIRMQATGAQTKCDNMLCSFVKIYNTEGVAGLWRGVGPTAQRAAVVAGVELPAYD 205
Query: 278 QITKAI 283
K I
Sbjct: 206 LCKKHI 223
>18662
Length = 551
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 124 PAETLKVKLIHDKLLEQP-KYKGMIDGIKTIASQQGLSGLYKGLTPTIIKQ 173
P L + +I +L +Y+GM + + I ++G+ GLY GL+PT+++
Sbjct: 391 PVSFLPITVIKTRLESGSFQYQGMANALTLIYKREGIRGLYSGLSPTLLRD 543
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 219 PVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGTLPRLSRVV 266
P+ VIKT ++ + +Y+ + + K EG+RGLY G P L R V
Sbjct: 406 PITVIKTRLES-GSFQYQGMANALTLIYKREGIRGLYSGLSPTLLRDV 546
>36831
Length = 671
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 10/141 (7%)
Frame = -2
Query: 149 GIKTIASQQGLSGLYKGLTPTIIKQGSNQGIRFLVYEDSKKLL----------KSVGTTD 198
G+ + +Q+G+S YKGL P ++Q ++F +E + +LL
Sbjct: 505 GLPKMMAQEGVSAFYKGLVPLWMRQIPYTMMKFACFERTLELLYQYVVPKPRADCTKGEQ 326
Query: 199 XXXXXXXXXXXXXXXXXXNTPVDVIKTLMQGLEAHKYKNSLDCFFQVLKNEGVRGLYKGT 258
+ P D T++ L K ++LD V K G GL+ G
Sbjct: 325 LIVTFAAGYIAGVFCAIVSHPAD---TVVSKLNQAKGASALD----VAKQLGWSGLWGGL 167
Query: 259 LPRLSRVVLDVAITFTLYEQI 279
+PR+ + A + +Y+ +
Sbjct: 166 VPRIVMIGTLTAAQWFIYDAV 104
>31492
Length = 448
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%)
Frame = +2
Query: 32 YPTEFVKTKMQLYPHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNE 91
+P + +KT++Q L G G G+Y GL + S P A+ F S E
Sbjct: 80 FPLDTIKTRLQSQQGLRGSG------------GFRGVYSGLMSAALGSAPSGALFFCSYE 223
Query: 92 ALKNNVFKEKNRVNTFMAGLGAGVCEAIVVVTPAETLKVK 131
A K ++ + G G A +V P E +K +
Sbjct: 224 ATKRAFSNDRWAPIGHVTGASVGEVTACLVRVPVEVVKTE 343
>28571
Length = 418
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 45 PHLAKKGAIQCAKDTIHQYGVVGLYKGLSALLTFSIPKTAVRFGSNE 91
PH+A G+ + T+H + V+ K LL S+PKT + E
Sbjct: 416 PHMAIDGSCKAISSTMHFHSVMHSCKPPICLLQ*SLPKTPQQLNIEE 276
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00118710__3812.m02480peptidyl-prolyl_cis-trans_isomerase,
_cyclophilin-type_family_protein
(163 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05336 234 1e-62
00176 226 2e-60
23478 187 2e-48
03374 185 7e-48
07030 181 9e-47
07382 176 5e-45
15913 149 5e-37
03857 144 1e-35
12711 125 1e-29
12506 120 4e-28
11676 115 1e-26
06379 77 9e-25
05986 98 2e-21
14547 90 4e-19
02140 73 5e-14
08983 73 7e-14
23338 53 6e-08
15093 39 7e-04
13072 32 0.17
13195 30 0.55
10318 29 0.75
>05336
Length = 1406
Score = 234 bits (598), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 112/162 (69%), Positives = 132/162 (81%), Gaps = 1/162 (0%)
Frame = +3
Query: 3 NPRVYFDISIGGQNAGRIEFELFSNV-PKTAENFRALCTGEKGFGYKGCPFHRIIPQFMI 61
PRVYFD++ G GRIEFELF++V PKTAENFR+LCTGEKGFG+K FHR+IP+FM
Sbjct: 105 RPRVYFDMTADGDEIGRIEFELFADVVPKTAENFRSLCTGEKGFGFKNSIFHRVIPEFMC 284
Query: 62 QGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFITTVPCPWL 121
QGGD T+ NGTGGKSIYG KF DENF KHT+PG+LSMANAGP+TNGSQFFITTV WL
Sbjct: 285 QGGDITRGNGTGGKSIYGNKFEDENFTMKHTKPGLLSMANAGPDTNGSQFFITTVVTSWL 464
Query: 122 DGKHVVFGKVTKGLDIVKKLEGQGTSTGKTKVACAILDCGQL 163
DG HVVFG+V+KG+DIV ++E G+ G+TK AI DCG+L
Sbjct: 465 DGCHVVFGEVSKGMDIVTEIEKLGSRGGQTKKKIAIADCGEL 590
>00176
Length = 1408
Score = 226 bits (577), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/160 (69%), Positives = 127/160 (79%), Gaps = 1/160 (0%)
Frame = -1
Query: 5 RVYFDISIGGQNAGRIEFELFSNV-PKTAENFRALCTGEKGFGYKGCPFHRIIPQFMIQG 63
RVYFD++IGG +AGRI EL ++V PKTAENFRALCT EKGFG+KG FHR+IP FM QG
Sbjct: 895 RVYFDMTIGGXDAGRIVMELRTDVVPKTAENFRALCTMEKGFGFKGSSFHRVIPGFMCQG 716
Query: 64 GDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFITTVPCPWLDG 123
GDFT NGTGGKSIYG KFADENF KHT PG+LSMANAGP TNGSQFF+ T WLDG
Sbjct: 715 GDFTNHNGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAETSWLDG 536
Query: 124 KHVVFGKVTKGLDIVKKLEGQGTSTGKTKVACAILDCGQL 163
KHVVFGKV +G+++VK +E G+ +GKT I DCGQL
Sbjct: 535 KHVVFGKVAEGMEVVKAIEKVGSQSGKTSKPVVIKDCGQL 416
>23478
Length = 909
Score = 187 bits (475), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/171 (56%), Positives = 119/171 (69%), Gaps = 10/171 (5%)
Frame = +1
Query: 3 NPRVYFDISIGGQNAGRIEFELFSN-VPKTAENFRALCTGEKG--------FGYKGCPFH 53
PR +FD+SIG Q GRI FEL+S+ PKT ENFRALCTGEKG YKG PFH
Sbjct: 103 RPRCFFDVSIGDQPGGRIVFELYSDECPKTCENFRALCTGEKGTSEKTGAVLHYKGAPFH 282
Query: 54 RIIPQFMIQGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFI 113
R++ FM+Q GDFTK +GTGG+SIYG FADENF +KH + +LSMAN G +TNGSQFFI
Sbjct: 283 RVVKDFMVQCGDFTKGDGTGGESIYGGHFADENFKFKHEKECLLSMANRGKDTNGSQFFI 462
Query: 114 TTVPCPWLDGKHVVFGKVTKGLDIVKKLEGQGT-STGKTKVACAILDCGQL 163
TT P P LD HVVFG V G ++VKK+E T + + +V + +CG+L
Sbjct: 463 TTNPAPHLDNVHVVFGHVLSGQEVVKKIEQLPTDARSRPEVEVKVANCGEL 615
>03374
Length = 852
Score = 185 bits (470), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Frame = +1
Query: 5 RVYFDISIGGQNAGRIEFELF-SNVPKTAENFRALCTGEKGFGYKGCPFHRIIPQFMIQG 63
+V+FDI+IGG+ AGR+E LF V KT NF+ L +G GYKG FHRII FMIQG
Sbjct: 46 KVFFDITIGGEPAGRVEIGLFGKTVEKTVRNFKELAEKPQGEGYKGSKFHRIIKDFMIQG 225
Query: 64 GDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFITTVPCPWLDG 123
GDFTK +GTGG+SIYGE+F DENF KH G LSMANAG +TNGSQFFITT WLDG
Sbjct: 226 GDFTKGDGTGGRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTKQTSWLDG 405
Query: 124 KHVVFGKVTKGLDIVKKLEGQGTSTGKTKVA-CAILDCGQL 163
+HVVFGK+ G+D+V+K+E T V I +CG +
Sbjct: 406 RHVVFGKILSGMDVVRKIEASATDARDRPVKDVVIANCGVI 528
>07030
Length = 2391
Score = 181 bits (460), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 114/169 (67%), Gaps = 7/169 (4%)
Frame = +2
Query: 2 ANPRVYFDISIGGQNAGRIEFELFSN-VPKTAENFRALCTGEKG-----FGYKGCPFHRI 55
+V+FDI IGG+ AGRI LF + VPKTA+NF++L G K YKG FHR+
Sbjct: 155 VTDKVFFDIEIGGEKAGRIVIGLFGDIVPKTAKNFKSLAVGFKDKDDNTLTYKGSKFHRV 334
Query: 56 IPQFMIQGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFITT 115
I FMIQGGDFT+ +GTGGKSIYGEKFADENF H G LSMANAG +TNGSQFF+TT
Sbjct: 335 IKDFMIQGGDFTRGDGTGGKSIYGEKFADENFKLNHYGAGWLSMANAGKDTNGSQFFLTT 514
Query: 116 VPCPWLDGKHVVFGKVTKGLDIVKKLEGQGTS-TGKTKVACAILDCGQL 163
WLDG+HVVFGKV +G+ +V+K+E T K I D G++
Sbjct: 515 KTTSWLDGRHVVFGKVLEGMSVVRKIESTKTDGRDKPHKDVVIADSGEI 661
>07382
Length = 1486
Score = 176 bits (445), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/147 (59%), Positives = 103/147 (70%), Gaps = 3/147 (2%)
Frame = +2
Query: 5 RVYFDISIGGQNAGRIEFELFSNV-PKTAENFRALCTGEKGFGY--KGCPFHRIIPQFMI 61
+V FDISI G+ AG IE LF +V PKT NF AL +G+ FGY KG FHR+I FMI
Sbjct: 137 KVVFDISIAGEPAGSIEIGLFGDVVPKTVNNFVALXSGQNAFGYNYKGSKFHRVISDFMI 316
Query: 62 QGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFITTVPCPWL 121
QGGDF NG+G KSIYG+ F DE+F KH G +SMAN GPNTNG QFFIT CPWL
Sbjct: 317 QGGDFVHNNGSGSKSIYGDLFDDEDFSVKHYGSGWISMANRGPNTNGCQFFITLRDCPWL 496
Query: 122 DGKHVVFGKVTKGLDIVKKLEGQGTST 148
DG HVVFGKV G+ +V+K+E T++
Sbjct: 497 DGSHVVFGKVIDGMKVVRKIEDIDTNS 577
>15913
Length = 1796
Score = 149 bits (376), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 89/124 (71%), Gaps = 9/124 (7%)
Frame = -1
Query: 3 NPRVYFDISIGGQNAGRIEFELFSN-VPKTAENFRALCTGEKG--------FGYKGCPFH 53
PR +FD+SIG Q GRI FEL+S+ PKT ENFRALCTGEKG YKG PFH
Sbjct: 1745 RPRCFFDVSIGDQPGGRIVFELYSDECPKTCENFRALCTGEKGTSEKTGAVLHYKGAPFH 1566
Query: 54 RIIPQFMIQGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFI 113
R++ FM+Q GDFTK +GTGG+SIYG FADENF +KH + +LSMAN G +TNGSQFFI
Sbjct: 1565 RVVKDFMVQCGDFTKGDGTGGESIYGGHFADENFKFKHEKECLLSMANRGKDTNGSQFFI 1386
Query: 114 TTVP 117
P
Sbjct: 1385 ADRP 1374
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -1
Query: 119 PWLDGKHVVFGKVTKGLDIVKKLEGQGT-STGKTKVACAILDCGQL 163
P LD HVVFG V G ++VKK+E T + + +V + +CG+L
Sbjct: 422 PHLDNVHVVFGHVLSGQEVVKKIEQLPTDARSRPEVEVKVANCGEL 285
>03857
Length = 1696
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/109 (63%), Positives = 81/109 (74%)
Frame = +1
Query: 55 IIPQFMIQGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFIT 114
+I FMIQGGDFT NGTGG+SIYG+KF DE+F KH P +LSMANAGPNTNGSQFFIT
Sbjct: 13 VIKDFMIQGGDFTNHNGTGGESIYGDKFDDESFDRKHDCPMLLSMANAGPNTNGSQFFIT 192
Query: 115 TVPCPWLDGKHVVFGKVTKGLDIVKKLEGQGTSTGKTKVACAILDCGQL 163
TVP P LDGKHVVFG+V G ++V++LE C+I DCG+L
Sbjct: 193 TVPTPHLDGKHVVFGEVIAGHNVVRELENVDKDGETPTKTCSIADCGEL 339
>12711
Length = 1926
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Frame = -2
Query: 1 MANPRVYFDISIGGQNAGRIEFELF-SNVPKTAENFRALCTGEKGFGYKGCPFHRIIPQF 59
M P + + S+G EL+ + P T NF LC +G+ Y G FHRII F
Sbjct: 446 MQPPNITIETSMG-----TFVLELYWKHAPNTCRNFAELC--RRGY-YNGIKFHRIIKDF 291
Query: 60 MIQGGDFTKQNGTGGKSIYGEKFADE-NFIYKHTEPGMLSMANAGPNTNGSQFFITTVPC 118
MIQGGD T G GG SIYG+ F DE KHT G+LSMAN+GPNTNGSQFFIT P
Sbjct: 290 MIQGGDPTG-TGRGGSSIYGKNFNDEIADDLKHTGAGILSMANSGPNTNGSQFFITLAPT 114
Query: 119 PWLDGKHVVFGKVTKGLDIVKKL 141
WLDGKH +FG+++ G+ ++K++
Sbjct: 113 QWLDGKHSIFGRISSGMTVIKRI 45
>12506
Length = 1056
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = -1
Query: 3 NPRVYFDISIGGQNAGRIEFELFSNV-PKTAENFRALCTGEKGFGYKGCPFHRIIPQFMI 61
P+VY DI IG + GRI +L ++V PKTAENFR LCT EKG+G+KG FHRIIPQFM
Sbjct: 639 QPQVYMDIKIGNRAVGRIIMQLRADVVPKTAENFRCLCTHEKGYGFKGSSFHRIIPQFMC 460
Query: 62 QGGDFTKQNGTGGKSIYGEKFADENF 87
QGGDFT NGTGGKSIYG+KF DE
Sbjct: 459 QGGDFTNHNGTGGKSIYGKKFEDEKL 382
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 58/91 (63%)
Frame = -2
Query: 73 GGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVT 132
G +NF +HT G LSMAN+GPNTNGSQFF+TT WLDGKHVVFG+V
Sbjct: 425 AGNPSTARSLRTKNFQLRHTAAGDLSMANSGPNTNGSQFFLTTXKTDWLDGKHVVFGRVI 246
Query: 133 KGLDIVKKLEGQGTSTGKTKVACAILDCGQL 163
+GLDIV K+E GT GK I +CG+L
Sbjct: 245 EGLDIVNKMEKCGTKGGKPTDKVTIANCGEL 153
>11676
Length = 499
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 67/94 (71%), Gaps = 7/94 (7%)
Frame = -3
Query: 5 RVYFDISIGGQNAGRIEFELF-SNVPKTAENFRALCTGE------KGFGYKGCPFHRIIP 57
+VYFDI IGG+ AGRI LF VPKTAENF+ LC G+ K YKG FHR+I
Sbjct: 293 KVYFDIEIGGEKAGRIVIGLFGKTVPKTAENFKQLCIGDQKSEDGKELTYKGSQFHRVIK 114
Query: 58 QFMIQGGDFTKQNGTGGKSIYGEKFADENFIYKH 91
FMIQGGDFT +GTGG+SIYGEKFADENF KH
Sbjct: 113 DFMIQGGDFTNGDGTGGRSIYGEKFADENFKLKH 12
>06379
Length = 1672
Score = 77.0 bits (188), Expect(2) = 9e-25, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%)
Frame = -2
Query: 48 KGCPFHRIIPQFMIQGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANAGPNTN 107
K F ++ +GGDFT +GTGG+SIYGEKFADENF KH G LSMAN+G +TN
Sbjct: 1053 KAANFTALLKTL*FKGGDFTNGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANSGKDTN 874
Query: 108 GSQF 111
GSQF
Sbjct: 873 GSQF 862
Score = 52.4 bits (124), Expect(2) = 9e-25, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Frame = -3
Query: 5 RVYFDISIGGQNAGRIEFELF-SNVPKTAENFRALCTGEK 43
+VYFDI IGG+ AGRI LF VPKTAENF+ LC G++
Sbjct: 1223 KVYFDIEIGGEKAGRIVIGLFGKTVPKTAENFKQLCIGDQ 1104
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Frame = -1
Query: 43 KGFGYKGCPFHRIIPQFMIQGGDFTK---------------------QNGTGGKSIYGEK 81
K YKG FHR+I FMIQGG F + + G +I+G+
Sbjct: 1069 KELTYKGSQFHRVIKDFMIQGGRFHQW*WHWWAEYIRRKVC**ELQAEALWGWLAIHGQL 890
Query: 82 FADENFIYKHTEPGMLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVTKGLDIVKKL 141
+ ++ ITT WLDG+HVVFGKV +G+D+V+++
Sbjct: 889 WQRHQWL---------------------SVLITTKKTTWLDGRHVVFGKVLEGMDVVRRI 773
Query: 142 EGQGTST-GKTKVACAILDCGQL 163
E TS K + C I D G +
Sbjct: 772 ENMKTSARDKPEKDCVIADSGAI 704
>05986
Length = 1295
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 16 NAGRIEFELFS-NVPKTAENFRALCTGEKGFGYKGCPFHRIIPQFMIQGGDFTKQNGTGG 74
+ G I+ EL+S PK+ NF LC +G+ Y G FHR++ +F++QGGD T G GG
Sbjct: 1227 SVGDIDVELWSKEAPKSCRNFIQLCL--EGY-YDGTAFHRVVKEFIVQGGDPT-DTGHGG 1060
Query: 75 KSIYGEKFADE-NFIYKHTEPGMLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKV 131
+S+YG F DE + + G+++MANAGP+ NGSQFF T P L KH +FGKV
Sbjct: 1059 ESVYGAPFKDEFHSRLRFVRRGLVAMANAGPHDNGSQFFFTMAATPELQNKHTIFGKV 886
>14547
Length = 491
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Frame = -1
Query: 6 VYFDISIGGQNAGRIEFELFSN-VPKTAENFRALCTGEKG--------FGYKGCPFHRII 56
VY DISIG + AGR+ EL+S+ PKT ENFRALCTGEKG Y FHRI+
Sbjct: 305 VYMDISIGEEAAGRLVIELYSDKAPKTCENFRALCTGEKGTSEETDLRLXYLNSLFHRIV 126
Query: 57 PQFMIQGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPG 95
IQGGD G GG+SI+G F DENF H G
Sbjct: 125 RNGWIQGGDIYHGRGNGGESIFGTVFEDENFAIPHDRRG 9
>02140
Length = 1796
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Frame = +3
Query: 18 GRIEFELFSN-VPKTAENFRALCTGEKGFGYKGCPFHRIIPQFMIQGGDFTKQNGTGGKS 76
G++ +L++ P+ +ENF LC K Y FH + + Q GD T G GG S
Sbjct: 111 GQLTVDLYTEERPRCSENFLKLC---KVKYYNFSLFHSVQENLVAQTGDPTA-TGRGGMS 278
Query: 77 IYGEKFADENFIY--------KHTEPGMLSMANAGPNTNGSQFFITT-VPCPWLDGKHVV 127
+YG + ++ + KH + G+LSM N G +GSQFFIT +LDG+H V
Sbjct: 279 VYGMVYGEQARYFDMEVSPRIKHKKRGLLSMVNNGAGKHGSQFFITLGESLDYLDGEHTV 458
Query: 128 FGKVTKGLDIVKKL 141
FG+V +G +++ KL
Sbjct: 459 FGEVAEGFEVLDKL 500
>08983
Length = 430
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Frame = +3
Query: 77 IYGEKFADE-NFIYKHTEPGMLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFG 129
IYG+ F DE KHT G+LSMAN+GPNTNGSQFFIT P WLDGKH +FG
Sbjct: 132 IYGKNFNDEIADDLKHTGAGILSMANSGPNTNGSQFFITLAPTQWLDGKHSIFG 293
>23338
Length = 1062
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = -1
Query: 105 NTNGSQFFITTVPCPWLDGKHVVFGKVTKGLDIVKKLE--GQGTSTGKTKVACAILDC 160
+TNGSQFFIT P +LDGKHV FGKV KG ++K + G G + I+DC
Sbjct: 1062 DTNGSQFFITLGPSRFLDGKHVAFGKVLKGFTLLKTINRMGPGDDYTTPRRPVRIVDC 889
>15093
Length = 537
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 106 TNGSQFFITTVPCPWLDGKHVVFGKVTKGLDIVKKLE 142
TN SQFF T LDGKH VFG++ G++ + +E
Sbjct: 3 TNKSQFFFTFRSARHLDGKHAVFGRLVGGIETLDAME 113
>13072
Length = 608
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 16 NAGRIEFELFSN-VPKTAENFRALCTGEKGFGYKGCPFHRIIPQF 59
N G + EL + VPKT ENF LC G+ Y G FHR I F
Sbjct: 234 NKGPLNVELHCDMVPKTCENFIKLCAS--GY-YDGTIFHRSIRNF 109
>13195
Length = 2498
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Frame = +2
Query: 23 ELFSNVPKTAENFRALCTGEKGFGYKGCPFH---------RIIPQFMIQGGDFTKQNGTG 73
+LFS+ ++ ++ T K F K CP + I+ F+I+ FTK+NG+
Sbjct: 794 KLFSSEKESNPFWKDTLTAFKQFANKTCPLYDVE*CQNLYSIMTHFVIRVLQFTKENGST 973
Query: 74 GKS 76
+S
Sbjct: 974 KES 982
>10318
Length = 1834
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 54 RIIPQFMIQGGDFTKQNGTGGKSIYGEKFADENFIYKHTEPGMLSMANA 102
RIIP F++ + KQ T S + F + ++Y HT + N
Sbjct: 1417 RIIPFFVLSFSPYNKQFNTCFLSNFQR*FKNTTYLYXHTHTTVRKYTNV 1563
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01194830__270.m00046AhpC/TSA_family_protein
(203 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10721 231 1e-61
09130 221 1e-58
09123 79 2e-15
06879 30 0.65
03514 28 3.6
14921 26 9.0
>10721
Length = 1542
Score = 231 bits (589), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/187 (58%), Positives = 134/187 (71%), Gaps = 1/187 (0%)
Frame = -2
Query: 6 INKPAPAFTTTAW-DGSVKTISLDQYLGKWVLLFFYPFDFTFVCPTEIISFSDAAETFRK 64
I KPAP F+ A DG KT+ L Y GK+V+LFFYP DFTFVCPTEII+FSD E FR
Sbjct: 1451 IQKPAPEFSVQAVVDGDFKTVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVEEFRS 1272
Query: 65 MNCEVLGCSIDSHFVHAEWCKKPRKEGGLGNMQIPLLADVSKQISSDYGVLITEGDAKGA 124
+ CEVL S DS F H W PRK+GGLGNM+IPLLAD + ++S YG L + +G
Sbjct: 1271 IQCEVLAASTDSVFSHLAWVNTPRKQGGLGNMKIPLLADKTLELSRMYGCL---KEDEGI 1101
Query: 125 AYRGTFIIDPKGNIRHISINDLPVGRNIDEYIRLVQAFQFVEEHGEVCPAKWKPGAKSMV 184
AYR +IID KG +R I++NDLPVGR++DE +RLVQAFQF ++HGEVCPA WKPGA ++
Sbjct: 1100 AYRALYIIDDKGTLRQITMNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGADTIK 921
Query: 185 PDHNSSK 191
P SK
Sbjct: 920 PSVKDSK 900
>09130
Length = 1000
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/191 (52%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
Frame = +1
Query: 2 SKAFINKPAPAFTTTA-WDGSVKTISLDQYLGKWVLLFFYPFDFTFVCPTEIISFSDAAE 60
S+A I+KPAP + TA DG K I L + GK+++ FFYP DFTFVCPTEI++FSD
Sbjct: 187 SQAVISKPAPDWNGTAVIDGEFKDIKLSDFRGKYLVFFFYPLDFTFVCPTEIVAFSDNVG 366
Query: 61 TFRKMNCEVLGCSIDSHFVHAEWCKKPRKEGGLGNMQIPLLADVSKQISSDYGVLITEGD 120
F+ +N EV+ CS+DS F H W PR +GGLG ++IPLL+D++ I+ YGV + +
Sbjct: 367 KFKSINTEVVACSVDSQFTHLAWINTPRNQGGLGPLKIPLLSDITHDIAKAYGVYLQD-- 540
Query: 121 AKGAAYRGTFIIDPKGNIRHISINDLPVGRNIDEYIRLVQAFQFVEEHGEVCPAKWKPGA 180
G + RG FIIDPKG +R I++NDLPVGR++DE +RLVQAFQ+ + HGEVCP WKPG+
Sbjct: 541 -LGHSLRGLFIIDPKGILRQITMNDLPVGRSVDETLRLVQAFQYTDAHGEVCPVGWKPGS 717
Query: 181 KSMVPDHNSSK 191
+++PD SK
Sbjct: 718 DTIIPDPKQSK 750
>09123
Length = 1944
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 6/157 (3%)
Frame = -3
Query: 34 WVLLFFYPFDFTFVCPTEIISFSDAAETFRKMNCEVLGCSIDSHFVHAEWCKKPRKEGGL 93
W +LF +P D+T VC TE+ + F K C+V S D H W K +K G+
Sbjct: 1606 WAILFSHPADYTPVCTTELGRVLNLIGEFEKRKCKVFALSCDGPESHKGWAKDVQKYAGV 1427
Query: 94 GN---MQIPLLADVSKQISSDYGVLITEGDAKGA---AYRGTFIIDPKGNIRHISINDLP 147
P++AD + ++ G++ K R FII P ++ +
Sbjct: 1426 DTDTKFPYPIIADEKRDLAVQLGMVDPAEKTKDGLPLTCRAVFIIGPDKKLKLSLLYPAT 1247
Query: 148 VGRNIDEYIRLVQAFQFVEEHGEVCPAKWKPGAKSMV 184
GRN DE +R++ + Q P W+PG K MV
Sbjct: 1246 TGRNFDEILRVLDSLQLTATKKVATPENWQPGGKCMV 1136
>06879
Length = 698
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 92 GLGNMQIPLLADVSKQISSD-YGVLITEGDAKGAAYRGTFIIDPKGNIR 139
GLG++ +PLLADV + +S+ + L GD +GA D GN+R
Sbjct: 465 GLGHVLLPLLADVGRHLSTQGHCCLP*FGDNEGA--------DRHGNMR 587
>03514
Length = 905
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 72 CSIDSHFVHAEWCKKPRKEGGLGNMQIPLLADV 104
C +DS+ +KPRK+GG+G I A+
Sbjct: 202 CCLDSYRT*NT*TRKPRKQGGMGXRSIKRQANA 104
>14921
Length = 1057
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 30 YLGKWVLLFFYPFDFTFVCPTEIISFSDAAETFRKM 65
Y G+WVLL+F +CP E+ +A ++ +
Sbjct: 465 YFGQWVLLYFGFTHCPDICPDELEKMVEAVDSIDAL 358
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00938820__170.m00104Elongation_factor_G,
_domain_IV_family_protein
(838 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
20758 152 2e-59
15617 183 3e-49
13945 69 3e-23
26111 82 1e-21
08198 70 3e-12
00709 47 2e-05
18903 45 1e-04
05177 45 2e-04
32306 40 0.004
22349 37 0.047
13184 31 1.6
24279 31 2.7
>20758
Length = 530
Score = 152 bits (383), Expect(2) = 2e-59, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 79/107 (73%)
Frame = +2
Query: 732 PQDAMGGVYNCLNQRRGIINEEEQVQGTPMAIVKAYLPVAESFGFTAHLRGLTQGQAFPQ 791
P DAMGG+Y L QRRGI+ EE V GTP+ I KAYLPVAESFGFT HLR T G+AFPQ
Sbjct: 188 PDDAMGGIYQTLTQRRGIVIGEEPVPGTPLVICKAYLPVAESFGFTQHLRQSTSGRAFPQ 367
Query: 792 CFFDHWATISGSPFEANSKAADIVNNIRKRKGLKEGIPDLNNYLDKL 838
C FDHW TI+ SP E +K + IRKRKGLK G+P L+N+LDKL
Sbjct: 368 CVFDHWDTINTSPLEEGTKGHSVCEGIRKRKGLKPGVPGLDNFLDKL 508
Score = 97.1 bits (240), Expect(2) = 2e-59, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 48/63 (76%)
Frame = +3
Query: 670 AVMTEEGMRGVRMNLLDCVLHADAIHRGAGQILPTARRLFYACELTAEPRLQEPIFTAEI 729
VMTEE MRG++ N+ D LH DAIHRG GQI+PTARR+FYA L+AEPR QEP+F EI
Sbjct: 3 GVMTEENMRGIKFNIQDVSLHTDAIHRGGGQIIPTARRVFYAACLSAEPRFQEPVFLCEI 182
Query: 730 TAP 732
P
Sbjct: 183 QTP 191
>15617
Length = 595
Score = 183 bits (464), Expect(2) = 3e-49, Method: Compositional matrix adjust.
Identities = 96/147 (65%), Positives = 113/147 (76%), Gaps = 8/147 (5%)
Frame = -3
Query: 16 QDNIRNMSVIAHVDHGKSTLTDSLICKAGIISSKAAGEARYTDTRDDEKERGITIKSTGV 75
Q NIRNMSVIAHVDHGKSTLTDSL+ KAGII+S AGE R+TDTR DE+ER ITIKST +
Sbjct: 443 QKNIRNMSVIAHVDHGKSTLTDSLVSKAGIIASAKAGETRFTDTRKDEQERCITIKSTAI 264
Query: 76 SMYYEYDLNETG--KQE------PYLLNLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 127
S+YYE ++ KQ+ +L+NLIDSPGHVDFSSEVTAALRVTDGAL
Sbjct: 263 SLYYELKKDDMKYIKQDYDQDNNAFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 84
Query: 128 XXXXQTETVLRQAMQEKIKPVLIVNKI 154
QTETVLRQA+ E+I+PVL++NK+
Sbjct: 83 GVCVQTETVLRQAIGERIRPVLMMNKM 3
Score = 31.6 bits (70), Expect(2) = 3e-49, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = -1
Query: 1 MVNFTVEQIRQIMDNQ 16
MVNFTV+QIR+IMDN+
Sbjct: 487 MVNFTVDQIREIMDNK 440
>13945
Length = 664
Score = 69.3 bits (168), Expect(2) = 3e-23, Method: Composition-based stats.
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -3
Query: 362 AMKACDPKGPLMMYVSKMVPTADKGRFVAFGRVFSG 397
+K CDPKG L+MYVSKMVPT+DKGRF AFGRVFSG
Sbjct: 614 GIKTCDPKGELVMYVSKMVPTSDKGRFFAFGRVFSG 507
Score = 58.5 bits (140), Expect(2) = 3e-23, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = -1
Query: 397 GTIATSQKVRILGPNYQPGKKEDLHEKTLQRTLIMQGRTTEYI 439
GT+AT QKVRI+GPN+ PGKKEDL+EK++QR L+ + R YI
Sbjct: 508 GTVATGQKVRIMGPNFIPGKKEDLYEKSIQR-LVSKCRLFFYI 383
>26111
Length = 413
Score = 81.6 bits (200), Expect(2) = 1e-21, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Frame = -3
Query: 591 GLAEDIEKGTINPKDDPKDRAKLLNEKYNWDRTEAGTKLWSFGPENVGPNLVVDQTKGIQ 650
GLAE I++GTI + K+R K+LN +N+D A K+W FGPE GPNL+VD T +Q
Sbjct: 228 GLAEAIDEGTIAATQNVKERGKMLNASFNFDLNLA-HKIWCFGPEGSGPNLLVDSTFAVQ 52
Query: 651 YVNEIKDSVESAWQWAS 667
++ +I+D+V + +QWAS
Sbjct: 51 HLQDIRDTVVAGFQWAS 1
Score = 40.8 bits (94), Expect(2) = 1e-21, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -2
Query: 530 ELHIEICLKDLEEDYANCPIIKSDPVVTYKETVT--AESNITCM-SKSANKHNRIYAKGA 586
ELH+EICLKDLE +A P S + V + C+ KS NKHNR++
Sbjct: 412 ELHLEICLKDLETVHAGVP---SRNQTRWCGIVRR*QRPLVRCVWPKSNNKHNRLFMTAQ 242
Query: 587 PLEDG 591
PL +G
Sbjct: 241 PLAEG 227
>08198
Length = 2555
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Frame = -1
Query: 715 TAEPRLQEPIFTAEITAPQDAMGGVYNCLNQRRGIINEEEQVQGTPMAIVKAYLPVAESF 774
T RL ++ I A D +G +Y + +R G + +E+ +GT + V PVAESF
Sbjct: 2183 TMPQRLMVAMYRCVIQADMDILGKLYAVIGKRNGRVIQEQLREGTQIFNVVTEFPVAESF 2004
Query: 775 GFTAHLRGLTQGQAFPQCFFDHWATISGSPF----------------EANSKAADIVNNI 818
G +R T G A PQ F HW + PF +++++A +N +
Sbjct: 2003 GLAEEMRKRTSGLASPQLRFSHWQVLDIDPFWVPSTEEEYLHYGEKADSDNQARTYMNEV 1824
Query: 819 RKRKGLK 825
R+RKGLK
Sbjct: 1823 RRRKGLK 1803
>00709
Length = 1076
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 23/160 (14%)
Frame = -2
Query: 21 NMSVIAHVDHGKSTLTDSLICKAGIISSK------------AAGEARYT---DTRDDEKE 65
N+ VI HVD GKST T LI K G I + G +Y D E+E
Sbjct: 883 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 704
Query: 66 RGITIKSTGVSMYYEYDLNETGKQEPYLLNLIDSPGHVDF-------SSEVTAALRVTDG 118
RGITI ++++ ET K Y + +ID+PGH DF +S+ A+ +
Sbjct: 703 RGITID---IALWK----FETTK---YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAS 554
Query: 119 ALXXXXXXXXXXXQTETVLRQAMQEKIKPVLI-VNKIDRS 157
QT A +K ++I VNK+D +
Sbjct: 553 GTGEFEAGISKEGQTREHALLAYTLGVKQLIIGVNKMDST 434
>18903
Length = 814
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = +2
Query: 102 HVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAMQEKIKPVLIVNKIDR 156
HVDF+ EV ALRV DG + QT TV RQA I ++ +NK+D+
Sbjct: 2 HVDFTVEVERALRVLDGTVTVLDASAGVEAQTLTVWRQAANYSIPSLVYLNKMDK 166
>05177
Length = 594
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = -3
Query: 716 AEPRLQEPIFTAEITAPQDAMGGVYNCLNQRRGIINEEEQVQGTPMAIVKAYLPVAESFG 775
A P+L EP+ EI+ +D + GV L+QRR +N + +V+A P++E G
Sbjct: 532 AGPQLLEPLMKLEISTDEDKLHGVLGDLSQRRSHVNFITSRHD--IKLVEALTPLSELVG 359
Query: 776 FTAHLRGLTQGQAFPQCFFDHW 797
++ LR +T G A H+
Sbjct: 358 YSTDLRTITSGTATVSMELSHY 293
>32306
Length = 441
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +1
Query: 530 ELHIEICLKDLEEDYANCPIIKSDPVVTYKETVTAESNITCMSKSANKHNRIYAKGAPLE 589
E+H++ C+ DL + YAN + S P+V ++ETV + ++++ N + A A L+
Sbjct: 7 EVHLQRCIDDLTQRYANIEVNVSKPIVPFRETVIPRPKVDRVNEAIQDQNTVLAS-ARLK 183
Query: 590 D 590
D
Sbjct: 184 D 186
>22349
Length = 662
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Frame = -2
Query: 16 QDNIRNMSVIAHVDHGKSTLTDSLICKAGIISSK--------AAGEARYT-------DTR 60
+D+I N+ I HVD GKST+ L+ G++ + A + R T DT
Sbjct: 499 KDHI-NVVFIGHVDAGKSTIGGHLLYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 323
Query: 61 DDEKERGITIKSTGVSMYYEYDLNETGKQEPYLLNLIDSPGHVDF 105
++E+E+G T++ ++E +L ++D+PGH F
Sbjct: 322 NEEREKGKTVEVG--RAFFETELKH--------FTVLDAPGHKSF 218
>13184
Length = 847
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 722 EPIFTAEITAPQDAMGGVYNCLNQRRGIINEEEQVQGTPMAIVKAYLPVAESF-GFTAHL 780
EP+ + P +GGV + RRG+I ++ + + + ++ + P+ E F L
Sbjct: 1 EPMVKGTVICPDQYLGGVTSLCLDRRGVIEDQLNIDNSHIMLIIKF-PLNEILVDFFDDL 177
Query: 781 RGLTQGQA 788
+ +T G A
Sbjct: 178 KSITSGYA 201
>24279
Length = 641
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 27/145 (18%)
Frame = +1
Query: 605 DDPKDRAKLLNEKYNWDRTEAGTKLWSFGPENVGPNLVVDQTKGI-----QYVNEIKDSV 659
D K R +L E ++ + K N+GPNLV + + ++ + DS
Sbjct: 133 DQEKSRVQLFQEDHSLALVSSSEKNQHGARRNIGPNLVFVLAEELLAWM*PFLYPLSDSC 312
Query: 660 E---SAWQWASKEAVMTEEGM---------------RGVRMNLLDCVLHADAIH----RG 697
E + WQ + + + R V++N C LH D+ H +
Sbjct: 313 EENGAFWQLCLRNPQVEPSNVTNHKHKIIKCIFLVYRNVQLNFQTCYLHCDSKHSLQIKS 492
Query: 698 AGQILPTARRLFYACELTAEPRLQE 722
ILP + L ++ RL E
Sbjct: 493 NNNILPIKMNIQRTVFLISKRRLCE 567
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00295170__3692.m00090Thioredoxin-
dependent_peroxide_reductase,_mitochondrial_precursor,_putative
(205 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10721 221 2e-58
09130 219 6e-58
09123 70 5e-13
11867 27 7.1
31309 27 8.3
31220 26 9.7
>10721
Length = 1542
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
Frame = -2
Query: 8 VQKAAPHFKGAAYCPKSKSFKQVSLEDYKGKYLLLFFYPLDFTFVCPTEIIQFSNHAKKF 67
+QK AP F A FK V L DYKGKY++LFFYPLDFTFVCPTEII FS+ ++F
Sbjct: 1451 IQKPAPEFSVQAVV--DGDFKTVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVEEF 1278
Query: 68 NETNCEVIGCSIDSHYTHQAYVQRPRSEGGLGEDLQISLLSDLTKNISRDYGVLTEG-GI 126
CEV+ S DS ++H A+V PR +GGLG +++I LL+D T +SR YG L E GI
Sbjct: 1277 RSIQCEVLAASTDSVFSHLAWVNTPRKQGGLG-NMKIPLLADKTLELSRMYGCLKEDEGI 1101
Query: 127 ALRGSFIIDDKQVLRHTSVNDLPVGRNVEEYLRLVQAFQYADKHGEVCPASWKPGAATMK 186
A R +IIDDK LR ++NDLPVGR+V+E LRLVQAFQ+ DKHGEVCPA WKPGA T+K
Sbjct: 1100 AYRALYIIDDKGTLRQITMNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGADTIK 921
Query: 187 PS 188
PS
Sbjct: 920 PS 915
>09130
Length = 1000
Score = 219 bits (558), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 134/184 (72%), Gaps = 1/184 (0%)
Frame = +1
Query: 5 KAFVQKAAPHFKGAAYCPKSKSFKQVSLEDYKGKYLLLFFYPLDFTFVCPTEIIQFSNHA 64
+A + K AP + G A FK + L D++GKYL+ FFYPLDFTFVCPTEI+ FS++
Sbjct: 190 QAVISKPAPDWNGTAVI--DGEFKDIKLSDFRGKYLVFFFYPLDFTFVCPTEIVAFSDNV 363
Query: 65 KKFNETNCEVIGCSIDSHYTHQAYVQRPRSEGGLGEDLQISLLSDLTKNISRDYGV-LTE 123
KF N EV+ CS+DS +TH A++ PR++GGLG L+I LLSD+T +I++ YGV L +
Sbjct: 364 GKFKSINTEVVACSVDSQFTHLAWINTPRNQGGLGP-LKIPLLSDITHDIAKAYGVYLQD 540
Query: 124 GGIALRGSFIIDDKQVLRHTSVNDLPVGRNVEEYLRLVQAFQYADKHGEVCPASWKPGAA 183
G +LRG FIID K +LR ++NDLPVGR+V+E LRLVQAFQY D HGEVCP WKPG+
Sbjct: 541 LGHSLRGLFIIDPKGILRQITMNDLPVGRSVDETLRLVQAFQYTDAHGEVCPVGWKPGSD 720
Query: 184 TMKP 187
T+ P
Sbjct: 721 TIIP 732
>09123
Length = 1944
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Frame = -3
Query: 39 YLLLFFYPLDFTFVCPTEIIQFSNHAKKFNETNCEVIGCSIDSHYTHQAYVQRPRSEGGL 98
+ +LF +P D+T VC TE+ + N +F + C+V S D +H+ + + + G+
Sbjct: 1606 WAILFSHPADYTPVCTTELGRVLNLIGEFEKRKCKVFALSCDGPESHKGWAKDVQKYAGV 1427
Query: 99 GEDLQI--SLLSDLTKNISRDYGVL-----TEGGIAL--RGSFIIDDKQVLRHTSVNDLP 149
D + +++D ++++ G++ T+ G+ L R FII + L+ + +
Sbjct: 1426 DTDTKFPYPIIADEKRDLAVQLGMVDPAEKTKDGLPLTCRAVFIIGPDKKLKLSLLYPAT 1247
Query: 150 VGRNVEEYLRLVQAFQYADKHGEVCPASWKPGAATMKPSHESDVTSK 196
GRN +E LR++ + Q P +W+PG M SD +K
Sbjct: 1246 TGRNFDEILRVLDSLQLTATKKVATPENWQPGGKCMVIPSVSDEEAK 1106
>11867
Length = 905
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 22 PKSKSFKQVSLEDYKGKYLLLFFYPLDFTFVCPTEIIQFSNHA 64
PK QV+ YK +Y+L F + T+ IIQ NHA
Sbjct: 414 PKLTPNHQVTNMRYKTEYILCFTNSIFGTYTVHIYIIQHHNHA 286
>31309
Length = 484
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 174 CPASWKPGAATMKPSH 189
CP SW+P A +PSH
Sbjct: 173 CPQSWRPKIAPARPSH 220
>31220
Length = 818
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = +2
Query: 82 HYTHQAYVQRPRSEGGLGEDLQISLLSDLTKNISRDYGVLTEGGIALRGSFIIDDKQVLR 141
H H++ R G+ + D+T I R G RG+ + VL
Sbjct: 140 HTDHESSASRGIDFQGVNNVINFDFPLDVTSYIHR-------AGRTARGN---NTGSVLS 289
Query: 142 HTSVNDLPVGRNVEEYLR 159
SV +LP+ + VEE LR
Sbjct: 290 FVSVKELPINQAVEEKLR 343
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01369760__351.m00013aminotransferase,
_classes_I_and_II_family_protein
(425 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29384 222 2e-58
29203 147 9e-36
33824 100 6e-33
38224 50 2e-06
>29384
Length = 672
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 97/185 (52%), Positives = 131/185 (70%)
Frame = -1
Query: 155 HHDIIKSSGLNFKQYRYYNPKNMSLDFNGMFTDISMAKPGSIVLLHACAHNPTGLDLTED 214
H I K +GLN K YRYY+P DF G DIS GS+++LHACAHNPTG+D +
Sbjct: 597 HTPIFKHAGLNVKSYRYYDPSTCGFDFAGAMDDISNMPKGSVIVLHACAHNPTGVDPKPE 418
Query: 215 QWKRLAGLFKQNRLFPFFDSAYQGFATGDLNRDAYSIRLFTELGFQLIVTQSFAKNMGLY 274
QW ++ K+ +FPFFD AYQGFA+GD++RDA+++R F + G Q+ ++QSFAKNMGLY
Sbjct: 417 QWCEMSQELKKRDIFPFFDMAYQGFASGDIDRDAFAVRQFVKDGHQVALSQSFAKNMGLY 238
Query: 275 SDRIGAFHLVCANKETAAKCLSQLKLVIRPMYSNPPAHGARIATKILTDPTLYNEWMEEL 334
+R+GAF ++C +KE A + +SQ+K++IRPMYSNPP HGARIA IL P L +W+ E+
Sbjct: 237 GERVGAFTIICESKEEADRVMSQIKILIRPMYSNPPIHGARIAGCILNTPELRKQWLTEV 58
Query: 335 SMVSR 339
R
Sbjct: 57 ERNGR 43
>29203
Length = 839
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 92/126 (73%)
Frame = +3
Query: 297 QLKLVIRPMYSNPPAHGARIATKILTDPTLYNEWMEELSMVSRRIIDMRTALKNELVRLE 356
Q++++ R M+SNP HGARI + +L +P L +W E+ ++ RI MR + N+L + E
Sbjct: 3 QMEIISRTMWSNPSHHGARIVSMVLNNPALCEQWSGEVKQMADRISGMRQMMVNKLRKKE 182
Query: 357 VPGNWNHIVTQIGMFSYTGLTPEQVEILINKYHIYLLKNGRISMCGITTKNVGYLAAAIK 416
+PG WNHI+ QIGMFS+TGLTP+QV+I++ +H+Y+L NGRISM G+TTKNV Y+ AI
Sbjct: 183 MPGTWNHILRQIGMFSFTGLTPDQVKIMVEDHHVYMLSNGRISMAGLTTKNVDYVVDAIC 362
Query: 417 DAVLST 422
DA+ T
Sbjct: 363 DAITRT 380
>33824
Length = 675
Score = 100 bits (248), Expect(2) = 6e-33, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 63/89 (70%)
Frame = -2
Query: 329 EWMEELSMVSRRIIDMRTALKNELVRLEVPGNWNHIVTQIGMFSYTGLTPEQVEILINKY 388
+W+ E+ ++ RII MRT LK+ L + NW+HI QIGMF +TGL P+QVE L +
Sbjct: 506 QWLTEVKGMADRIISMRTQLKDNLAKEGSSRNWDHITDQIGMFCFTGLGPDQVERLTKDF 327
Query: 389 HIYLLKNGRISMCGITTKNVGYLAAAIKD 417
+YL K+GRIS+ G+++KNVGYLA A+ +
Sbjct: 326 SVYLTKDGRISVAGLSSKNVGYLAKAMHE 240
Score = 59.3 bits (142), Expect(2) = 6e-33, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 33/41 (80%)
Frame = -3
Query: 281 FHLVCANKETAAKCLSQLKLVIRPMYSNPPAHGARIATKIL 321
F ++C +KE A + +SQ+K++IRPMYSNPP HGARIA IL
Sbjct: 658 FTIICESKEEADRVMSQIKILIRPMYSNPPIHGARIAGCIL 536
>38224
Length = 618
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 9/169 (5%)
Frame = -3
Query: 24 FEQVQLAPPDPILGTALAY-KADTSKDKMNLGVGAYRDDNEKPYPFKVV---RKVESQIV 79
+ V++ PPD ILG + K G G RDD+ KPY V R + +
Sbjct: 493 WPNVEMGPPDAILGGDRGLINVTPTPIK*IWG*GHNRDDDGKPYVLPSVFAGRDEDCEFQ 314
Query: 80 NDHSIDKEYLPIDGLAQFNAAAQQLIFGKDSTAVKDGRVITSQAISGTGALRIGFEFLAK 139
+ + Y A F+ + F + G + + L E L+
Sbjct: 313 LGQXVCRHYRS----A*FHQGSSGTCFWLQQRDPEGGTELFNSNYFWNRNL-FALEHLS- 152
Query: 140 FYN-----REVLVSNPTWGNHHDIIKSSGLNFKQYRYYNPKNMSLDFNG 183
F N + + P+WGNH I K +GLN K YRYY+P DF G
Sbjct: 151 FQNGMDPAKIFYIPTPSWGNHTPIFKHAGLNVKSYRYYDPSTCGFDFAG 5
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00926980__166.m00059acetyl-
CoA_acyltransferases_family_protein
(389 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02902 219 2e-57
13792 105 1e-35
37378 62 9e-17
19453 81 8e-16
19628 78 6e-15
17665 64 1e-10
>02902
Length = 2008
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 171/282 (60%), Gaps = 3/282 (1%)
Frame = +2
Query: 92 MKSVILGAQQIQLGLSNCIVTGGFESMSNAPFYVQNYRKGASYGNQTLIDGLANDGLVDA 151
++++ GAQ+I+LG+S ++ GG E+M+ APF V++ R G +G ++ + +GL D+
Sbjct: 2 FQAIVSGAQEIELGMSQMVLVGGTENMTQAPFAVRDIRFGTRFGQDLKLEDMLWEGLTDS 181
Query: 152 YNKIAMGLCAEKTASDFQLTRELQDHYCITSYERTLNAMNSGKFADEIVPVKINDK---E 208
Y K+ MG+ AE A + ++R+ D + + R A +GKF DEI P+K+ K E
Sbjct: 182 YVKLPMGMTAENLAQQYNISRQDCDQHAFQTQXRWQEAQKAGKFDDEIYPIKVKGKKGPE 361
Query: 209 TVTQDEDPLKFKKEKIPVLKPAFSKTGTITAANASKINDGACSIILMSEQKVKELGLTPL 268
DE P E + L P F K GT+TA NAS I DGA ++IL SE+ VK LTPL
Sbjct: 362 DFAVDEHPRVTPVEVLAKLPPVFKKDGTVTAGNASGICDGAAALILASEEAVKANNLTPL 541
Query: 269 GRIISYADAEVDPIDFCIAPAKSSQKALDRAGMKISQLEYFEFNEAFSATALANMKLLDI 328
R++SY A DP I PA +S+ AL++AG + ++ E NEAF+ LA K L +
Sbjct: 542 ARLVSYGYAGCDPKVMGIGPAPASRAALEKAGKTVQDMDVVEVNEAFAPQFLAVAKELGL 721
Query: 329 DISKINLHGGAVALGHPVGVSGARIIQSLLTVLKVNKGKYGL 370
D ++ N++GGA+ALGHP+G SGARI +L+ ++ + KY +
Sbjct: 722 DNARTNVNGGAIALGHPLGASGARITSNLVHEIRRSNLKYAM 847
>13792
Length = 1330
Score = 105 bits (262), Expect(2) = 1e-35, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 18/166 (10%)
Frame = +3
Query: 221 KEKIPVLKPAFSKTGTITAANASKINDGACSIILMSEQKVKELGLTPLGRIISYADAEVD 280
K K +KP GT+TAANAS + DGA + ++MSE+K +G PL + + D
Sbjct: 840 KTKAAFIKP----HGTVTAANASFLTDGASACLIMSEEKALAMGYKPLAYLRDFLYVAQD 1007
Query: 281 PID-FCIAPAKSSQKALDRAGMKISQLEYFEFNEAFSATALANMKLLDID---------- 329
P D + PA ++ + L++AG+ +S + FE++EAF+ LANMK LD D
Sbjct: 1008 PKDQLLLGPAYATPRILNKAGLTMSDISVFEYHEAFAGQILANMKALDSDWFGTNMMGLQ 1187
Query: 330 -------ISKINLHGGAVALGHPVGVSGARIIQSLLTVLKVNKGKY 368
+ K+NL GG+++LGHP G +G R++ + L G++
Sbjct: 1188 GKAGAPALDKLNLWGGSLSLGHPFGATGVRLVTTAANRLHKEDGQF 1325
Score = 62.8 bits (151), Expect(2) = 1e-35, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 17/211 (8%)
Frame = +1
Query: 6 IVAAKRTPIGSFLGKLSNIKAPELSAIATRAALESKKIDPKHVDEVILGNVIGAGLGQNP 65
+V RTP N+ +L+ A + L+ + V V+ G VI N
Sbjct: 130 LVDGVRTPFLQSGTSYKNLMPHDLARTALQGLLKRTGLPKDAVXYVVYGTVIQEVKTSNV 309
Query: 66 ARQASLAAGISVSVPSYSIQKVCASGMKSVILGAQQIQLGLSNCIVTGGFESMSNAP--- 122
AR+ASL AGIS VP++++ + C S +++ G I G + +V GG E MS+ P
Sbjct: 310 AREASLGAGISNRVPAHTVTQACISSNQAITTGVGLIASGQCDAVVAGGVEFMSDVPIRH 489
Query: 123 -------FYVQNYRKGASYGNQTLIDGLANDGLVDAYNKIA-------MGLCAEKTASDF 168
N K Q + L L +A MG ++ A+ F
Sbjct: 490 SRKMRRLMLSMNKAKTVPXRLQLVSQMLTPASLTPELPAVAEFSTNETMGHSGDRLAAAF 669
Query: 169 QLTRELQDHYCITSYERTLNAMNSGKFADEI 199
++R QD + + S+ A G D +
Sbjct: 670 NVSRLEQDEFALRSHTLAFEASEKGLLTDRL 762
>37378
Length = 367
Score = 62.4 bits (150), Expect(2) = 9e-17, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +1
Query: 114 GFESMSNAPFYVQNYRKGASYGNQTLIDGLANDGLVDAYNKIAMGLCAEKTA 165
G ESMSN P+Y++ R YG +IDG+ +DGL D YNK+ MG CAE TA
Sbjct: 1 GMESMSNVPYYLK--RGATPYGGVNMIDGIVHDGLWDVYNKVHMGSCAENTA 150
Score = 42.0 bits (97), Expect(2) = 9e-17, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +3
Query: 159 LCAEKTASDFQLTRELQDHYCITSYERTLNAMNSGKFADEIVPVKINDKET----VTQDE 214
LC E Q+TR+ QD + I SY+R+ A + F EI PVKI K +++DE
Sbjct: 132 LCGE-YGKKMQVTRQEQDAFAIESYKRSAKAWSDKVFDQEIAPVKIQLKRKPEVIISEDE 308
Query: 215 DPLKFKKEKIPVLKPAFSK 233
+ + +K L F +
Sbjct: 309 EYKRVNFDKFGKLTTVFQR 365
>19453
Length = 633
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Frame = -3
Query: 158 GLCAEKTASDFQLTRELQDHYCITSYERTLNAMNSGKFADEIVPVKINDKETVTQ---DE 214
G C +D + R + CI + F EIVPV I + VT+ DE
Sbjct: 451 GKCGPAMEADSRGARPV----CIAVTAQV*GCSEGWAFDAEIVPVSIQSRTGVTEVKKDE 284
Query: 215 DPLK-FKKEKIPVLKPAFSK--TGTITAANASKINDGACSIILMSEQKVKELGLTPLGRI 271
P E + L+PAF K +GT+TA NAS INDGA ++++MS + K L PL RI
Sbjct: 283 FPRAGCSIEGLQKLRPAFIKDGSGTVTAGNASGINDGAAAVVVMSATEAKARSLQPLVRI 104
Query: 272 ISYADAEVDPIDFCIAPAKSSQKALDRAGMKISQ 305
+S+A A VDP P + + A+++AG + +
Sbjct: 103 VSWAQAGVDPSIMGTGPIPAVRAAVEKAGWTVGE 2
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%)
Frame = -1
Query: 100 QQIQLGLSNCIVTGGFESMSNAPFYVQNYRKGASYGNQTLIDGLANDGLVDAYNKIAMGL 159
Q ++ G + +V GG ESMS AP V + R G +G+ L+D + DGL+DA++ MG+
Sbjct: 633 QAVRSGDAKVVVAGGQESMSKAPHCV-HMRAGTKFGDVPLVDSMMKDGLIDAFHNYHMGI 457
Query: 160 CAEKTASDFQLTRELQDHYCITSYERTLNAMNSG 193
AE A ++LTRE QD + + S + A +G
Sbjct: 456 TAENVAQQWKLTREEQDQFALQSQHKCEAAQKAG 355
>19628
Length = 537
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 66/104 (63%)
Frame = -2
Query: 268 LGRIISYADAEVDPIDFCIAPAKSSQKALDRAGMKISQLEYFEFNEAFSATALANMKLLD 327
LG + S+A P I PA + +AL +AG+ ++ ++ FE NEAF++ A ++ L
Sbjct: 530 LGVLRSFAVTGCPPDIMGIGPAVAIPEALKKAGLTVNDIDIFEINEAFASQARYCVEKLG 351
Query: 328 IDISKINLHGGAVALGHPVGVSGARIIQSLLTVLKVNKGKYGLA 371
I + ++N GGA+ALGHP+G +GAR+I +LL +K +GK G+
Sbjct: 350 IPMDRVNPKGGAIALGHPLGCTGARMIGTLLHEMK-RRGKRGMG 222
>17665
Length = 477
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -3
Query: 311 FNEAFSATALANMKLLDIDISKINLHGGAVALGHPVGVSGARIIQSLLTVLKVNKGKYGL 370
NEAF+A +LA +K L D +K+N++GGA+ALGHP+G SGARI+ +LL +K K G+
Sbjct: 475 LNEAFAAQSLAVVKDLGCDPAKVNVNGGAIALGHPIGASGARILVTLLHSMKHRGAKKGV 296
Query: 371 A 371
A
Sbjct: 295 A 293
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00713190__112.m00115SPFH_domain_/_Band_7_family_protein
(276 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07529 216 7e-57
20881 193 6e-50
>07529
Length = 1399
Score = 216 bits (550), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 158/221 (71%)
Frame = +2
Query: 43 GIKEKIYGEGMHFYIPFFQKPITFAIRLQSKTITSQTGTKDLQTVDIALRLLFRPVESQL 102
G++E +Y EG+HF +P+FQ PI + IR + + ITS TG+KDLQ V+I+LR+L RP+ SQL
Sbjct: 5 GVQEDVYVEGLHFRVPWFQYPIIYDIRSRPRKITSPTGSKDLQMVNISLRVLSRPIASQL 184
Query: 103 PNIYLKLGTDYDERILPSVGKETLKSVIAQYDADQILKXXXXXXXXXXXXXXXNAKEFNI 162
P++Y LGTDYDER+LPS+ E LKSV+A+++A Q++ AK+FNI
Sbjct: 185 PHVYRSLGTDYDERVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELTERAKDFNI 364
Query: 163 ILDDVSFIHLGFMKEYANAIEQKQVAQQNVERQRYIVDRDEQEKQAQIIKSEGEAEAAIM 222
ILDDVS L F +EY A+E KQVAQQ +R +++V++ +QEKQ ++++++GEA+AA +
Sbjct: 365 ILDDVSITELSFGREYTAAVESKQVAQQEAQRAQFLVEKAKQEKQQKMVQADGEAQAAKL 544
Query: 223 INKAVKQFGAAQIELKRLEAAKNIAETLSKSQNISFVPSGA 263
I +AV Q ++L+++ AA+NI+ T+++SQN ++ + A
Sbjct: 545 IGQAV-QANPGFLKLRKIRAAQNISRTVAQSQNRVYLNASA 664
>20881
Length = 2017
Score = 193 bits (491), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 137/206 (66%)
Frame = +1
Query: 57 IPFFQKPITFAIRLQSKTITSQTGTKDLQTVDIALRLLFRPVESQLPNIYLKLGTDYDER 116
IP+ QKPI F R + + + TG+KDLQ V+I LR+LFRP LP I+ LGTDYDER
Sbjct: 208 IPWVQKPIIFDCRSRPRNVPVVTGSKDLQNVNITLRILFRPQVPSLPKIFTNLGTDYDER 387
Query: 117 ILPSVGKETLKSVIAQYDADQILKXXXXXXXXXXXXXXXNAKEFNIILDDVSFIHLGFMK 176
+LPS+ E LK+++AQ+DA +++ A +F ++LDD+S HL F +
Sbjct: 388 VLPSITNEVLKAIVAQFDASELITQRELVSQKVSEELTDRALQFGLLLDDISLTHLTFGR 567
Query: 177 EYANAIEQKQVAQQNVERQRYIVDRDEQEKQAQIIKSEGEAEAAIMINKAVKQFGAAQIE 236
E+ A+E KQVAQQ ER R++V++ EQ+K+A +I +EG++ AA + KA + G +E
Sbjct: 568 EFTEAVESKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSLAAEQLAKAFGEAGEGLVE 747
Query: 237 LKRLEAAKNIAETLSKSQNISFVPSG 262
L++LEAA++IA LS+S+N+ ++P G
Sbjct: 748 LRKLEAAEDIAYQLSRSRNVVYLPQG 825
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00079540__3828.m01463succinyl-CoA_synthetase,
_beta_subunit_family_protein
(534 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
23243 215 3e-56
32143 154 6e-38
25453 67 2e-11
15830 52 5e-07
31372 45 9e-05
>23243
Length = 1938
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 153/219 (69%)
Frame = +2
Query: 312 IVKGLYKCFSETDSTLLEINPLGLTIDGKLLICDQKMNVDDNAAYRQPEIAQMEDITQKD 371
I+K F + D+T++EINP+ G++ D K++ DDNA+YRQ +I ++ D +Q+D
Sbjct: 68 IIKLYNDVFLKHDATMVEINPMSEDNTGEVYCMDAKISFDDNASYRQKDIFELRDWSQED 247
Query: 372 SKEIEADQNALNYIALDGNIGCMVNGAGLAMATMDLIQSKNGMPANFLDCGGKADDRQVF 431
++ +A Q LNYIALDG+IGC+VNGAGLAMATMD+I+ G PANFLD GG A +QV
Sbjct: 248 DRDHKAAQADLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGSPANFLDVGGGATAQQVT 427
Query: 432 AALKIMEQDPNVEAIFVNIFAGITRCDIICLGLIRALSELGMKKPIVLRLKGTNVDEAKQ 491
A +++ D V AI VNIF GI RCDII G++ A +EL MK PIV+RL+GT VD+AK
Sbjct: 428 EAFRLITSDSKVNAILVNIFGGIMRCDIIAQGIVAAAAELDMKIPIVVRLQGTRVDDAKA 607
Query: 492 IIQDSGFNMLVTEDLSQAAEKAVKMAAILRMARDARINI 530
II S +L ++L +AA+ VK++ I+ +AR+A +++
Sbjct: 608 IIAASSMKILACDNLDEAAQMVVKLSTIVNLAREASVDV 724
>32143
Length = 616
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 110/165 (66%), Gaps = 2/165 (1%)
Frame = -3
Query: 352 DNAAYRQPEIAQMEDI-TQKDSKEIEADQNALNYIALDGNIGCMVNGAGLAMATMDLIQS 410
DNA +RQ + +Q + + D +E+EA ++ LNY+ +DGNIGC+VNGAGLAMATMD+I+
Sbjct: 614 DNAQFRQRKSSQWTSLKXEADPREVEATKHNLNYVGMDGNIGCLVNGAGLAMATMDIIKL 435
Query: 411 KNGMPANFLDCGGKADDRQVFAALKIMEQDPNVEAIFVNIFAGITRCDIICLGLIRALSE 470
G PANFLD GG + QV A +I+ DP V+ I VN+F GI C I G++ A +
Sbjct: 434 NGGEPANFLDVGGGVKEDQVTKAFEILTSDPKVKGILVNVFGGIVNCATIANGIVAASKK 255
Query: 471 LGMKKPIVLRLKGTNVDEAKQ-IIQDSGFNMLVTEDLSQAAEKAV 514
L + P+V+RL+G NV +A++ I++SG + DL AA+KAV
Sbjct: 254 LKLNVPLVVRLEGNNVTKAREGSIKNSGLPIQTASDLDDAAQKAV 120
>25453
Length = 469
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 3/192 (1%)
Frame = -3
Query: 145 RGKGFFKENGMQSGVQFATSPQEVKDIAEKMLGKTLITKQTGLRGRSVNSVLVVERTFLR 204
RGKG F +NG + GV ++ +V ++++M+G LITKQT G VN V+V +
Sbjct: 467 RGKGTF-DNGFKGGVHITSNKGDVLTLSKQMIGNRLITKQTPKSGILVNKVMVARSVNIT 291
Query: 205 KVICFRNRIVYLFIPQYKFMRKWQQCVRLMFLNKQKQELYLAITLDRKQGGVVIICNERG 264
+ E Y+ I LDR+ G V+I + G
Sbjct: 290 R------------------------------------ETYICILLDREHNGPVLIASPAG 219
Query: 265 GVNIE---QQDESSVKTHFVNVHEGLTQQTLDDISKSLNLGSQYNDQLHKIVKGLYKCFS 321
G++IE ++ +KT +++ + + + L +++K L + ++ LY F
Sbjct: 218 GMDIETVAKETPEKIKTVPLDIGKPIPEAKLIEVAKFLEFKGDTVKRCADEIQKLYTLFK 39
Query: 322 ETDSTLLEINPL 333
D+ +EINPL
Sbjct: 38 SVDAVQIEINPL 3
>15830
Length = 798
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +2
Query: 454 ITRCDIICLGLIRALSELGMKKPIVLRLKGTNVDEAKQIIQDSGFNMLVTEDLSQAAEKA 513
I C I G+ A + ++ P+V+RL+GTNVDEAK+I+ +S ++ DL AA+KA
Sbjct: 2 IVNCATIARGITNACKSINLQLPLVVRLEGTNVDEAKRILVESELPIVSAGDLDDAAQKA 181
Query: 514 V 514
V
Sbjct: 182 V 184
>31372
Length = 332
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 55/108 (50%)
Frame = -3
Query: 62 SAQFLPKSSKLSFNPQYNIILHEYQVMDLLQKYDLPVISGSVATSAEQALNVAQQLKNSK 121
S LP S + + ++ +HE+ M LL+ + V VA ++ +AL AQ++
Sbjct: 294 SGAHLPTSCQ----QRRHLSIHEHMSMGLLRDAGVSVPRFKVAATSGEALQQAQEIGKLS 127
Query: 122 PTNQSQGITFTDFVVKAQIHAGGRGKGFFKENGMQSGVQFATSPQEVK 169
D VVKAQ+ AGGRGKG + ++G++ GV+ + + K
Sbjct: 126 GA--------PDVVVKAQVLAGGRGKGTW-DSGLKGGVKLVSRQKRHK 10
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00437600__3708.m00038succinyl-CoA_synthetase,
_beta_subunit_family_protein
(444 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
23243 212 3e-55
32143 165 3e-41
25453 84 2e-16
15830 47 2e-05
31372 40 0.002
>23243
Length = 1938
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 159/235 (67%)
Frame = +2
Query: 208 AYNLGSAFDQQLKNIVTSLYKCFIDNDATLLEINPLGLTIDNQIKLCDQKMNIDDNSSYR 267
A++ GS D+ ++I+ F+ +DAT++EINP+ ++ D K++ DDN+SYR
Sbjct: 29 AFSEGS-VDKAAEDIIKLYNDVFLKHDATMVEINPMSEDNTGEVYCMDAKISFDDNASYR 205
Query: 268 QPRLSQMEDITQKDWKEIEAQRYGLNYIALDGNIGCMVNGAGLAMATMDIIKQKNGMPAN 327
Q + ++ D +Q+D ++ +A + LNYIALDG+IGC+VNGAGLAMATMDIIK G PAN
Sbjct: 206 QKDIFELRDWSQEDDRDHKAAQADLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGSPAN 385
Query: 328 FLDCGGKADDTQVVEALKIMDNDPNVEAILVNIFAGITKCDIICLGLIKGMSLLGMKKPI 387
FLD GG A QV EA +++ +D V AILVNIF GI +CDII G++ + L MK PI
Sbjct: 386 FLDVGGGATAQQVTEAFRLITSDSKVNAILVNIFGGIMRCDIIAQGIVAAAAELDMKIPI 565
Query: 388 ILRLKGNNVEAAKEIIQNSGFNLIFTEDLDEAAEKAVKTAMIIRMAKEAKINLEL 442
++RL+G V+ AK II S ++ ++LDEAA+ VK + I+ +A+EA ++++
Sbjct: 566 VVRLQGTRVDDAKAIIAASSMKILACDNLDEAAQMVVKLSTIVNLAREASVDVKF 730
>32143
Length = 616
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 113/165 (68%), Gaps = 2/165 (1%)
Frame = -3
Query: 262 DNSSYRQPRLSQMEDI-TQKDWKEIEAQRYGLNYIALDGNIGCMVNGAGLAMATMDIIKQ 320
DN+ +RQ + SQ + + D +E+EA ++ LNY+ +DGNIGC+VNGAGLAMATMDIIK
Sbjct: 614 DNAQFRQRKSSQWTSLKXEADPREVEATKHNLNYVGMDGNIGCLVNGAGLAMATMDIIKL 435
Query: 321 KNGMPANFLDCGGKADDTQVVEALKIMDNDPNVEAILVNIFAGITKCDIICLGLIKGMSL 380
G PANFLD GG + QV +A +I+ +DP V+ ILVN+F GI C I G++
Sbjct: 434 NGGEPANFLDVGGGVKEDQVTKAFEILTSDPKVKGILVNVFGGIVNCATIANGIVAASKK 255
Query: 381 LGMKKPIILRLKGNNVEAAKE-IIQNSGFNLIFTEDLDEAAEKAV 424
L + P+++RL+GNNV A+E I+NSG + DLD+AA+KAV
Sbjct: 254 LKLNVPLVVRLEGNNVTKAREGSIKNSGLPIQTASDLDDAAQKAV 120
>25453
Length = 469
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Frame = -3
Query: 91 RGKGYFKESSLQGGVQFAHSPEEVGKIAEKMIGKTLITKQTGSRGRNVSSVMITERIFLR 150
RGKG F ++ +GGV + +V ++++MIG LITKQT G V+ VM+ + +
Sbjct: 467 RGKGTF-DNGFKGGVHITSNKGDVLTLSKQMIGNRLITKQTPKSGILVNKVMVARSVNIT 291
Query: 151 KEMYFSITLDRTRGGLCIICNEKGGVNIE---EGDPKHIKTFFLEPGIEIPNETLNEIIA 207
+E Y I LDR G +I + GG++IE + P+ IKT L+ G IP L E+
Sbjct: 290 RETYICILLDREHNGPVLIASPAGGMDIETVAKETPEKIKTVPLDIGKPIPEAKLIEVAK 111
Query: 208 AYNLGSAFDQQLKNIVTSLYKCFIDNDATLLEINPL 243
++ + + LY F DA +EINPL
Sbjct: 110 FLEFKGDTVKRCADEIQKLYTLFKSVDAVQIEINPL 3
>15830
Length = 798
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +2
Query: 364 ITKCDIICLGLIKGMSLLGMKKPIILRLKGNNVEAAKEIIQNSGFNLIFTEDLDEAAEKA 423
I C I G+ + ++ P+++RL+G NV+ AK I+ S ++ DLD+AA+KA
Sbjct: 2 IVNCATIARGITNACKSINLQLPLVVRLEGTNVDEAKRILVESELPIVSAGDLDDAAQKA 181
Query: 424 VKT 426
V +
Sbjct: 182 VAS 190
>31372
Length = 332
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Frame = -3
Query: 25 QNNIILHEYQVHNLFKEYKLPLLQAYRATHPEDAIKLAEQLERQKPRNNASQFTDFVVKA 84
+ ++ +HE+ L ++ + + + A +A++ A+++ + S D VVKA
Sbjct: 261 RRHLSIHEHMSMGLLRDAGVSVPRFKVAATSGEALQQAQEIGK------LSGAPDVVVKA 100
Query: 85 QVHAGGRGKGYFKESSLQGGVQF 107
QV AGGRGKG + +S L+GGV+
Sbjct: 99 QVLAGGRGKGTW-DSGLKGGVKL 34
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00300410__3691.m00113GTP-
binding_protein_YchF_containing_protein
(382 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
20257 208 4e-54
29917 129 2e-30
22318 40 0.001
18173 34 0.11
17271 33 0.15
16899 32 0.38
34622 30 2.3
20160 29 2.5
14433 29 3.0
26256 28 5.2
00817 28 7.2
>20257
Length = 757
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 142/216 (65%), Gaps = 1/216 (0%)
Frame = +1
Query: 14 LGRPGNTLKMGIVGLPNVGKSTTFNLLSNLNIPAENYPFCTIDPNLAKVFVDDERFDKLC 73
+GR G L++GI+GLPNVGKS+ FN+L+ PAEN+PFCTIDPN ++V V D+R++ LC
Sbjct: 103 IGRMGTNLRIGILGLPNVGKSSFFNVLTKNAAPAENFPFCTIDPNESRVPVPDKRWEFLC 282
Query: 74 EIHKPKSKVPATLSIMDIAGLVPGASKGEGLGNAFLSHIRETDAIYHVVRAFDDPEITHT 133
+ +P SKVPA L+++DIAGLV GA +G+GLGNAFLS+I DA++HVVRAF D EI H
Sbjct: 283 DYFQPASKVPAYLNVVDIAGLVKGAHEGKGLGNAFLSNINACDAMFHVVRAFSDEEIIHV 462
Query: 134 ENEVNPVRDMQIISDELVYKDQEILGKRLEEVNHKINR-FNDKDAKEEKEIXXXXXXXXX 192
E EV+P RD++II DEL KD E L K LE + + R DK KEE ++
Sbjct: 463 EGEVDPPRDLEIIHDELRLKDMEYLRKHLEPLERSVVRGGGDKKKKEEFDVLKKVESMLE 642
Query: 193 XXXWVRTADWNATEVDILNKYMFLTSKPVVYLVNLS 228
WVR LTSKPV+YLVNLS
Sbjct: 643 EKKWVRLGHVGRKGD*SS*PAFVLTSKPVIYLVNLS 750
>29917
Length = 409
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 73/91 (80%)
Frame = +1
Query: 279 SRIIKTGYKVLDLIYFFTAGPDEVRAWTVRAESRAPQAAGVIHTDFEKGFICAEIMKYDD 338
+II GYK L+L+YFFT+G DEV+AWT++ S+APQAAG IHTDFEKGFI AE+M + D
Sbjct: 85 GKIIVNGYKALNLVYFFTSGKDEVKAWTIQVGSKAPQAAGRIHTDFEKGFIMAEVMNFKD 264
Query: 339 FIAAGSENAVKAEGKYYQKGKEYVVQDGDII 369
F AGSE A KA GKY QKG++Y+V DGDII
Sbjct: 265 FKEAGSEVACKAAGKYKQKGRDYIVDDGDII 357
>22318
Length = 808
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%)
Frame = +3
Query: 22 KMGIVGLPNVGKSTTFNLLSNLNIPAENYPFCTIDPNLAKVFVDDERFDKLCEIHKPKSK 81
++ ++G P+VGKST + L+ Y F T+ C I
Sbjct: 243 RVALIGFPSVGKSTLLSTLTKTESECAAYEFTTLT----------------C-IPGVIEY 371
Query: 82 VPATLSIMDIAGLVPGASKGEGLGNAFLSHIRETDAIYHVVRAFDDPEITHTENEVNPVR 141
A + ++D+ G++ GA++G+G G ++ R D I ++ A T+ +V
Sbjct: 372 AGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLIIIMLDA--------TKGDVQ--- 518
Query: 142 DMQIISDELVYKDQEILGKRLEEVNHKINR 171
+E+L K LE V ++NR
Sbjct: 519 -------------KELLEKELEAVGIRLNR 569
>18173
Length = 1308
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 19 NTLKMGIVGLPNVGKSTTFNLLSNLNIPAENYPFCT 54
NT + I G PNVGKS+ N ++N ++ + Y F T
Sbjct: 545 NTRTIIICGFPNVGKSSFINKVTNADVEVQPYAFTT 652
>17271
Length = 566
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%)
Frame = -2
Query: 26 VGLPNVGKSTTFNLLSNLNIPAENYPFCTIDPNLAKVFVDDERFDKLCEIHKPKSKVPAT 85
VG P+VGKST + L+ + Y F T+ + R+ A
Sbjct: 520 VGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVI-----RYKG------------AK 392
Query: 86 LSIMDIAGLVPGASKGEGLGNAFLSHIRETDAIYHVV 122
+ ++D+ G++ GA G+G G ++ R I+ V+
Sbjct: 391 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCGLIFIVL 281
>16899
Length = 736
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 275 TSMMSRIIKTGYKVLD-LIYFFTAGPDEVRA-WTVRAESRAPQAAGVIHTDFEKGFICA 331
+++ SR++++ +V + F+AG D++ A WT Q A VIHTD F CA
Sbjct: 443 STIKSRLLESAIEVKSPRLSLFSAGRDDINADWTRS------QPADVIHTDPSPDFSCA 285
>34622
Length = 477
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -3
Query: 324 FEKGFICAEIMKYDDFIAAGSENAVKAEGKYYQKGKEYVVQDGDIIFFKFNVSK 377
+EKG + + M F+AA S NA + Y +KG+ V D D++ + N ++
Sbjct: 457 WEKGVMMGK-MDACRFVAATSANAARIYNIYPRKGRIAVGSDADVVVWDGNQTR 299
>20160
Length = 1277
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 236 KNKWLVKIKEWITTNC-PGEIIPYSADHEKQILEGKQDSKTSMMSRIIKTGYKVLDLI-Y 293
K+KW+ K E+ T+C PGE S H +L +S I+ T Y+ L Y
Sbjct: 407 KHKWMTKDYEYHLTSCQPGEFQRASDSHAPPVLPLDSWRLRHXLSDIL-TSYEFKPLSEY 583
Query: 294 FFTAGPDEVRAW 305
A D++RAW
Sbjct: 584 HQRAFDDDMRAW 619
>14433
Length = 520
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 20 TLKMGIVGLPNVGKSTTFNLL 40
++++GIVG PN GKS+ N L
Sbjct: 3 SIRVGIVGFPNTGKSSIINSL 65
>26256
Length = 437
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 225 VNLSSEDYMRKKNKWLVKIKEW--ITTNCPGEIIPYSADHEKQILEGKQDSKTSMMSRII 282
+ SS+ M K W+ ++W I+ C G PY D + LE + +++S SR
Sbjct: 208 THYSSQKSMLKS--WVQMPEQWEGISKQCSGFYCPYRLDQQTTYLECLKHTRSSFGSREP 381
Query: 283 KTGYKVLD 290
K Y+ +
Sbjct: 382 KQRYEQIS 405
>00817
Length = 2606
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 21 LKMGIVGLPNVGKSTTFNLL 40
+ +G++G PNVGKS+ N L
Sbjct: 609 ISVGLIGYPNVGKSSIINAL 668
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00584850__3675.m00036hypothetical_protein
(516 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01678 206 2e-53
03616 145 5e-35
18545 86 5e-17
16321 29 4.6
>01678
Length = 2407
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 175/312 (56%), Gaps = 50/312 (16%)
Frame = +2
Query: 249 KQFLENDRKVLKFFVFSEIP---------FFLHYYLADDTLEIREIHRQNSGRDPFPLYL 299
KQFL++DR VL+FF + + +HY+LADDTLEIRE+ NSGRD P++L
Sbjct: 65 KQFLDHDRHVLRFFCYWDDTDNMFGDPRQMVMHYFLADDTLEIREVIPPNSGRDSAPVFL 244
Query: 300 KRQKLPKQF-ALNQPG-------------------------QTYAEN--FVKPTDIKFGE 331
+R +LPK ALNQPG +T A + F K +D G
Sbjct: 245 RRGRLPKNIEALNQPGVRTDRTVLNVFGPMGHGGRYILDSLKTGAVHPEFYKDSDFTLGT 424
Query: 332 DLVAFGKKFRINGCDKYTQDYYREKYNI-DFPLGEDYEMQYRDIVKREIPPYNGFGDEED 390
+ +G+KF + CD++T++YY KY I +F + KRE PPYNGFG EED
Sbjct: 425 AINVWGRKFVLCDCDQFTKEYYTTKYGITEFSPCSFGPGGSGGLGKREFPPYNGFGSEED 604
Query: 391 SLGYVYRLIPKPPRKDFFKWVD------NQVTLRFNAKFNTNKPEDIHRRFIITYYLNDD 444
SL L+PKPP++DF K+++ + LRF A+ +T KP D RRFII+Y+L+DD
Sbjct: 605 SLCSCMGLLPKPPKRDFIKFMERDRRGLDSNVLRFLARMDTEKPIDKDRRFIISYFLSDD 784
Query: 445 SLQVYEPAIRNSGIPDGKFLEKNRYKN------VQTNNEYFQPTDLVVGKDVIINGYSFR 498
+L V+EP +RNSGI GKFLE+ R K +EY+ +DL VG V N + F
Sbjct: 785 TLLVFEPPVRNSGIIGGKFLERGRVKKPNQMPYSTELSEYYLASDLFVGAAVNFNKHKFI 964
Query: 499 ILECDEYTLKWF 510
+++ DEY ++
Sbjct: 965 LIDADEYAFRYM 1000
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 135/328 (41%), Gaps = 57/328 (17%)
Frame = +2
Query: 92 WVKMDRQVLRFNAYFKESCVESSLEAYRVRKVVLFFYLEDSSIEISEPKQMNSGIPQG-S 150
++ DR VLRF Y+ ++ R++V+ ++L D ++EI E NSG
Sbjct: 71 FLDHDRHVLRFFCYWDDTDNMFG----DPRQMVMHYFLADDTLEIREVIPPNSGRDSAPV 238
Query: 151 FLKRQKV-----------LKAD----------GSG------------VYLSLY---DFQI 174
FL+R ++ ++ D G G V+ Y DF +
Sbjct: 239 FLRRGRLPKNIEALNQPGVRTDRTVLNVFGPMGHGGRYILDSLKTGAVHPEFYKDSDFTL 418
Query: 175 GQDLEFFGKIFHIYDCDIYTREFYEN-LGIPQGASELPDSDNWEKKTLNKFVPVKD-HML 232
G + +G+ F + DCD +T+E+Y GI + + +F P
Sbjct: 419 GTAINVWGRKFVLCDCDQFTKEYYTTKYGITEFSPCSFGPGGSGGLGKREFPPYNGFGSE 598
Query: 233 KDFMEHKLGGGRVPSQK---QFLENDRK-----VLKFFVF--SEIP------FFLHYYLA 276
+D + +G P ++ +F+E DR+ VL+F +E P F + Y+L+
Sbjct: 599 EDSLCSCMGLLPKPPKRDFIKFMERDRRGLDSNVLRFLARMDTEKPIDKDRRFIISYFLS 778
Query: 277 DDTLEIREIHRQNSG--RDPFPLYLKRQKLPKQFALNQPGQTYAENFVKPTDIKFGEDLV 334
DDTL + E +NSG F L R K P Q P T + +D+ G +
Sbjct: 779 DDTLLVFEPPVRNSGIIGGKF-LERGRVKKPNQM----PYSTELSEYYLASDLFVGAAVN 943
Query: 335 AFGKKFRINGCDKYTQDYYREKYNIDFP 362
KF + D+Y Y E++ ++FP
Sbjct: 944 FNKHKFILIDADEYAFRYM-EEHPLEFP 1024
>03616
Length = 2372
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 125/238 (52%), Gaps = 14/238 (5%)
Frame = +2
Query: 293 DPFPLYLKRQKLPKQ---------FALNQPGQTYAENFVKPTDIKFGEDLVAFGKKFRIN 343
DPFP+ + R K+PK + + +++ P D G+ + +G++F +
Sbjct: 2 DPFPVLIGRHKVPKDRYGVPSSFPAVVMELSDNEIKDYFTPKDFMVGQTVSLYGRRFLVY 181
Query: 344 GCDKYTQDYYREKYNI-DFPLGEDYEMQYRDIVKREIPPYNGFGDEEDSLGYVYRLIPKP 402
D +T+ +Y + I DFP D + + K EIPPYN FG EDSL LIP+P
Sbjct: 182 DTDNFTKAFYYHNFGITDFP-KVDTAGNGKGLPKMEIPPYNNFGSLEDSLQSCLSLIPQP 358
Query: 403 PRKDFFKWVDN-QVTLRFNAKFNTNKPEDIHRRFIITYYLNDDSLQVYEPAIRNSGIPDG 461
P+KDF K ++N LRF A ++ +PED RRFII+Y L DD L VYEP +RNSGI G
Sbjct: 359 PKKDFIKMLENDHKVLRFEAIMDSLRPEDSGRRFIISYRLADDMLTVYEPQVRNSGIIGG 538
Query: 462 KFLEKNRYK---NVQTNNEYFQPTDLVVGKDVIINGYSFRILECDEYTLKWFANNIVQ 516
KFLE+ R + +Y+ P D +G + I + F I D + L + + Q
Sbjct: 539 KFLERTRVAKPGSAPDRPDYYGPQDFFIGAVIEIFNHRFVITNADAFVLSYMEEHANQ 712
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 17/210 (8%)
Frame = +2
Query: 166 YLSLYDFQIGQDLEFFGKIFHIYDCDIYTREF-YENLGIPQGASELPDSDN-WEKKTLNK 223
Y + DF +GQ + +G+ F +YD D +T+ F Y N GI ++ P D K L K
Sbjct: 113 YFTPKDFMVGQTVSLYGRRFLVYDTDNFTKAFYYHNFGI----TDFPKVDTAGNGKGLPK 280
Query: 224 F-VPVKDHM--LKDFMEHKLGGGRVPSQKQF---LENDRKVLKFFVF--------SEIPF 269
+P ++ L+D ++ L P +K F LEND KVL+F S F
Sbjct: 281 MEIPPYNNFGSLEDSLQSCLSLIPQPPKKDFIKMLENDHKVLRFEAIMDSLRPEDSGRRF 460
Query: 270 FLHYYLADDTLEIREIHRQNSGRDPFPLYLKRQKLPKQFALNQPGQTYAE-NFVKPTDIK 328
+ Y LADD L + E +NSG + K ++ + +PG ++ P D
Sbjct: 461 IISYRLADDMLTVYEPQVRNSG-------IIGGKFLERTRVAKPGSAPDRPDYYGPQDFF 619
Query: 329 FGEDLVAFGKKFRINGCDKYTQDYYREKYN 358
G + F +F I D + Y E N
Sbjct: 620 IGAVIEIFNHRFVITNADAFVLSYMEEHAN 709
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 18/261 (6%)
Frame = +2
Query: 79 NCPNDVTELYQPTWVKM---DRQVLRFNAYFKESCVESSLEAYRVRKVVLFFYLEDSSIE 135
+C + + + + ++KM D +VLRF A E S R+ ++ + L D +
Sbjct: 332 SCLSLIPQPPKKDFIKMLENDHKVLRFEAIMDSLRPEDS-----GRRFIISYRLADDMLT 496
Query: 136 ISEPKQMNSGIPQGSFLKRQKVLKADGSGV----YLSLYDFQIGQDLEFFGKIFHIYDCD 191
+ EP+ NSGI G FL+R +V K GS Y DF IG +E F F I + D
Sbjct: 497 VYEPQVRNSGIIGGKFLERTRVAKP-GSAPDRPDYYGPQDFFIGAVIEIFNHRFVITNAD 673
Query: 192 IYTREFYENLGIPQGASELPDSD-NWEKKTLNKFVPVKDHMLKDFMEHKLGGGRVPSQKQ 250
+ + E + A++ P + N K+ L + P K+ + M+ K G + Q
Sbjct: 674 AFVLSYME-----EHANQFPPATVNSLKEKLGQTXPGKEMVKGGPMKVKRSQGDL---DQ 829
Query: 251 FLENDRKVLKFFVFSEIPFFLHYYLADDTLEIREIHRQNSGRDPFPLYLKRQKLP----- 305
+ R LK ++ +L D I +N RD +R +LP
Sbjct: 830 LVRQVRAQLKKIAITDKSRVDEMFLRYDRDRTGYISVENM-RD----LCRRLQLPVDDDV 994
Query: 306 -----KQFALNQPGQTYAENF 321
+Q ++Q G+ E+F
Sbjct: 995 ILALVQQCTMDQEGRISLEDF 1057
>18545
Length = 478
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 63/98 (64%)
Frame = -1
Query: 86 ELYQPTWVKMDRQVLRFNAYFKESCVESSLEAYRVRKVVLFFYLEDSSIEISEPKQMNSG 145
E + P V D++VL+FNAY+K++ ES E +RVR V +++YLED SI + EP NSG
Sbjct: 292 EDFIPAHVAWDKKVLKFNAYYKQTVHESQNEYFRVRPVDIYYYLEDDSIAVIEPHVENSG 113
Query: 146 IPQGSFLKRQKVLKADGSGVYLSLYDFQIGQDLEFFGK 183
+PQG +KRQ++ K D G D GQ++ F+GK
Sbjct: 112 MPQGKLIKRQRLPKND-RGDXWHWKDINNGQNVTFYGK 2
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = -1
Query: 416 TLRFNAKFNTNKPEDIHRRFI-----ITYYLNDDSLQVYEPAIRNSGIPDGKFLEKNR 468
L+FNA + E + F I YYL DDS+ V EP + NSG+P GK +++ R
Sbjct: 253 VLKFNAYYKQTVHESQNEYFRVRPVDIYYYLEDDSIAVIEPHVENSGMPQGKLIKRQR 80
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Frame = -1
Query: 255 DRKVLKFFV-------------FSEIPFFLHYYLADDTLEIREIHRQNSGRDPFPLYLKR 301
D+KVLKF F P ++YYL DD++ + E H +NSG P +KR
Sbjct: 262 DKKVLKFNAYYKQTVHESQNEYFRVRPVDIYYYLEDDSIAVIEPHVENSGM-PQGKLIKR 86
Query: 302 QKLPKQFALNQPGQTYAENFVKPTDIKFGEDLVAFGK 338
Q+LPK N G + DI G+++ +GK
Sbjct: 85 QRLPK----NDRGDXWHW-----KDINNGQNVTFYGK 2
>16321
Length = 870
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Frame = -1
Query: 68 MSTTHDTYR---PVNCPNDVTELYQPTWVKMDRQVLRFNAYFKESCVE---SSLE-AYRV 120
MST D + ++T ++ W+++D + ++++ + SC SLE + V
Sbjct: 330 MSTHRDVAKNALTAEIDAEITNKWRWDWLQLDYEEKKYDSNVRSSCASYKWVSLEFIFHV 151
Query: 121 RKVVLFFYLEDSSIEI--SEPKQMNSGIP 147
R+V+ F L+ ++ SE SG+P
Sbjct: 150 RRVITFLLLKTRQRQVLFSEKSSS*SGLP 64
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00463450__3823.m01164serine_hydroxymethyltransferase_family_
protein
(487 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12733 203 1e-52
37134 156 2e-45
04097 28 5.6
>12733
Length = 925
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 131/178 (73%)
Frame = +1
Query: 308 GGPHQHSIAAISLALKQAQTPQYKEYQTQVLQNSKAMAESLLKRNYTLVSGGTDNHLVLL 367
GGPH+H IA +++ALK+A TP+Y+ YQ QVL+N+KAM ++L+KR Y +VSGGTDNHLVL+
Sbjct: 211 GGPHEHQIAGVTVALKEAMTPEYQAYQQQVLKNAKAMCDALIKRGYKVVSGGTDNHLVLV 390
Query: 368 DLRSKNLDGARMETLLELVNIYVNKNTVPGDKSALIPSGLRLGTPALTTRGLVEKDIDQV 427
DLR DGAR+E +LEL I VNKNT GDKSA+ P GLRLG PALT+RG E D ++V
Sbjct: 391 DLRPHGTDGARVERVLELCFITVNKNTCAGDKSAMTPGGLRLGAPALTSRGFKEADFZRV 570
Query: 428 VEFIDRATHLVPQISKQSGSKVAEFKSWIQANSESVPELVSLRNEVIQFSKQFQVPAI 485
V+ +D+ + + KQ+ + + EFK+++ N+E+V +L +L+ EV F+K F +P +
Sbjct: 571 VDLLDKGVQIAVNVQKQTKT-LKEFKAYVLENAEAVSQLDALKTEVKSFAKHFTMPGL 741
Score = 92.8 bits (229), Expect(2) = 1e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 PFDHCDLVSTTTHKSLRGPRGALVFYRRGVKKVDKK-GNKIMYDIENKINKAVYPMLQGG 309
PFD+ D+VS+TTHK+LRGPR ++F+R+GVK +DKK G +IMYD E KIN A++P LQGG
Sbjct: 38 PFDYADVVSSTTHKTLRGPRSGIIFHRKGVKSIDKKTGKEIMYDYEKKINNAIFPALQGG 217
Query: 310 PHQHSIAAISLALKQAQTPQYKEYQTQ 336
P + A+ K+ P + ++
Sbjct: 218 PTNTRLLALQSLSKRP*RPSTRRTSSK 298
Score = 21.9 bits (45), Expect(2) = 1e-19, Method: Compositional matrix adjust.
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 239 LSGLVAANVIP 249
+SGLVA NVIP
Sbjct: 3 ISGLVAGNVIP 35
>37134
Length = 416
Score = 156 bits (394), Expect(2) = 2e-45, Method: Composition-based stats.
Identities = 67/102 (65%), Positives = 81/102 (79%)
Frame = -1
Query: 92 GNQHIDENELLCQQRALETFRLNPEEWGVTVQPYSGAISNFIVYTGLLQPHDRIMGLDLP 151
GN HIDE E LCQQRALE FRL+PE+WGV VQPYSG+ +NF V+T LL PHDR+MGLDLP
Sbjct: 308 GNVHIDEMERLCQQRALEAFRLDPEKWGVNVQPYSGSPANFAVFTALLNPHDRLMGLDLP 129
Query: 152 HGGHLSHGYQTRARKVSYVSSFFEVNPYRLNEKTGLIDYDRL 193
GGHL+HG+ T ++VS S +FE PYRL+ +TG IDY +L
Sbjct: 128 DGGHLTHGFMTDTKRVSATSLYFESMPYRLDPQTGYIDYKKL 3
Score = 44.7 bits (104), Expect(2) = 2e-45, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 61 ENHCSKAVLDALGTCMNQKYSEGLPGKRFQVGNQ 94
EN S+AVL+A+G+C+ KYSEG PG R+ G +
Sbjct: 402 ENFASRAVLEAVGSCLTNKYSEGYPGARYYGGQR 301
>04097
Length = 1008
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Frame = +1
Query: 64 CSKAVLDALGTCMNQKYSEGLPGKRFQV---------GNQHIDENELLCQQRALETFRLN 114
S +L + T + +Y G++FQV G + +++ + + R L+ L
Sbjct: 133 VSDTILVPVSTRFSYQYITMGGGEKFQVPDWRSYKIDGIKELEQTQRMLAARGLKDPWLR 312
Query: 115 PEEWGVTVQPYSGAISNFIVYTG-----------LLQPHDRIMGLDLPHGGH 155
E W T + Y G N + G + +D+ + D HGGH
Sbjct: 313 NEVWRFTKENYGGQYRNAAISLGRGLKWALAAMAVTVAYDKFVKKDDGHGGH 468
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00529790__3684.m00033Citrate_synthase_family_protein
(551 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04396 200 2e-51
24635 137 9e-33
08275 112 5e-25
31172 89 2e-19
17426 32 0.67
18295 31 1.6
09028 31 1.7
26042 30 2.1
04357 30 3.1
25789 30 3.6
18897 29 4.7
>04396
Length = 1170
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 132/194 (68%), Gaps = 2/194 (1%)
Frame = -2
Query: 151 VNFILNLPKDLHSMTMLSMALLYLQKDSKFAKLYDEGKISKKDYWEPFYEDSMDLIAKIP 210
+ + N P +LH M+ S A+ L +SKFAK Y +G + K YWE YEDSMD+IAK+P
Sbjct: 1154 ITMLNNFPSNLHPMSQFSAAITALNSESKFAKAYADG-VHKSKYWELVYEDSMDMIAKLP 978
Query: 211 RVAAIIYRHKYRXXXX-XXXXXXXXWAGNYAHMMGFEQHVVKECIRGYLSIHCDHEGGNV 269
VA+IIY + YR W+ N+ M+G++ E +R YL+IH DHEGGNV
Sbjct: 977 TVASIIYCNLYRDGVTPCAIDTNKDWSENFTSMLGYKDAEFTELMRLYLTIHSDHEGGNV 798
Query: 270 SAHTTHLVGSALSDPYLSYSAGVNGLAGPLHGLANQEVLKWLLQFIEEKGTK-VSDKDIE 328
SAHT HLVGSALSDPYLS++AG+NGLAGPLHGLANQEVL W + E G K VSD+++
Sbjct: 797 SAHTCHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLVWTTKLREALGGKDVSDEELR 618
Query: 329 DYVDHVISSGRVVP 342
D++ + + SG+VVP
Sbjct: 617 DFIWNTLKSGQVVP 576
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 78/109 (71%)
Frame = -2
Query: 433 YGHAVLRDTDPRFHHQVDFSKFHLKDDQMIKLLHQCADVIPKKLLTYKKIANPYPNVDCH 492
YGHAVLR TDPR+ Q +F+ HL +D M +L+ Q V+P L+ K NP+PNVD H
Sbjct: 572 YGHAVLRKTDPRYTCQREFALKHLPNDPMFRLVSQLYKVVPDILIEQGKAKNPWPNVDAH 393
Query: 493 SGVLLYSLGLTEYQYYTVVFAVSRALGCMANLIWSRAFGLPIERPGSAD 541
SGVLL +TE YYTV+F VSRALGCMA+LIW RAFGLPIERP S D
Sbjct: 392 SGVLLQYYKMTEMNYYTVLFGVSRALGCMASLIWDRAFGLPIERPKSFD 246
>24635
Length = 461
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Frame = -2
Query: 235 WAGNYAHMMGFEQHVVKECIRGYLSIHCDHEGGNVSAHTTHLVGSALSDPYLSYSAGVNG 294
W+ N+ M+G++ E +R YL+IH DHEGGNVSAHT HLVGSALSDPYLS++AG+NG
Sbjct: 406 WSENFTSMLGYKDAEFTELMRLYLTIHSDHEGGNVSAHTCHLVGSALSDPYLSFAAGMNG 227
Query: 295 LAGPLHGLANQEVLKWLLQFIEEKGTK-VSDKDIEDYVDHVISSGRVVPE 343
LAGPLHGLANQEVL W + E G K VSD+++ D++ + + SG+VVP+
Sbjct: 226 LAGPLHGLANQEVLVWTTKLREALGGKDVSDEELRDFIWNTLKSGQVVPD 77
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -2
Query: 471 VIPKKLLTYKKIANPYPNVDCHSGVLL 497
V+P L+ K NP+PNVD HSGVLL
Sbjct: 88 VVPDILIEQGKAKNPWPNVDAHSGVLL 8
>08275
Length = 1782
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 62/87 (71%)
Frame = +3
Query: 455 HLKDDQMIKLLHQCADVIPKKLLTYKKIANPYPNVDCHSGVLLYSLGLTEYQYYTVVFAV 514
HL +D M +L+ Q V+P L+ K NP+PNVD HSGVLL +TE YYTV+F V
Sbjct: 12 HLPNDPMFRLVSQLYKVVPDILIEQGKAKNPWPNVDAHSGVLLQYYKMTEMNYYTVLFGV 191
Query: 515 SRALGCMANLIWSRAFGLPIERPGSAD 541
SRALGCMA+LIW RAFGLPIERP S D
Sbjct: 192 SRALGCMASLIWDRAFGLPIERPKSFD 272
>31172
Length = 411
Score = 88.6 bits (218), Expect(2) = 2e-19, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 65/95 (68%)
Frame = +3
Query: 7 LLKQASLSQKSQYNFSQTNLKKVIAEIIPQKQAELKEVKEKYGDKVVGQYTVKQVIGGMR 66
LL ASL S + T+LK + ++P+KQ E+ E ++K+G+ VG+ TV + GGMR
Sbjct: 81 LLNAASLRYASAA--TSTDLKDALERLVPEKQKEIVEFRKKHGNSKVGEVTVDMMYGGMR 254
Query: 67 GMKGLMSDLSRCDPYQGIIFRGYTIPQLKEFLPKA 101
G++GL+++ S DP +GI FRGY+IP+ +E LPKA
Sbjct: 255 GIRGLVTETSVLDPDEGIRFRGYSIPECQEILPKA 359
Score = 25.0 bits (53), Expect(2) = 2e-19, Method: Composition-based stats.
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1
Query: 115 PEGIFWLLMT 124
PEG+FWLL+T
Sbjct: 382 PEGLFWLLVT 411
>17426
Length = 482
Score = 32.0 bits (71), Expect = 0.67, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +3
Query: 66 RGMKGLMSDLSRCDPYQGIIFRGYTIPQLKEFLPKADPKAADQANQEPLPEGIFWLLMTG 125
R + GL DL Y G+ G +P L P++ P +D EP P I+ +
Sbjct: 90 RAIAGLEQDL-----YSGM-HTGGMMPSLTSLGPRSVPLLSDNRFNEPAPPHIYTDPLMR 251
Query: 126 QLPTHAQV 133
+P AQV
Sbjct: 252 TMPAQAQV 275
>18295
Length = 481
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +1
Query: 148 QDCVNFILNLPKDLHSMTMLSMALLYLQKDSKFAKLYDEGKISKKDYWEPFYEDSMDLI 206
+D NF++ L + + + S +LLY + D F +L+ + +K YW+ F E S++ I
Sbjct: 199 KDTRNFMIILLIFVLAYAVASESLLYPENDLNFVRLF---HLPRKAYWQVFGELSLEEI 366
>09028
Length = 966
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -2
Query: 152 NFILNLPKDLHSMTMLSMALLYLQKDSKFAKLYDEGKISKKDYWEPFYEDSMDLIAKI 209
N+ILNLP L S+T L Q DSK +L++ + + D WE E M ++ ++
Sbjct: 401 NYILNLP--LWSLTKERKEELMKQGDSKREELFELRRKTPSDLWEDDLEQFMIMLNEV 234
>26042
Length = 440
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 145 TVNQDCVNFILNLPKDLHSMTML 167
T+ Q+C+NFILNLP + T L
Sbjct: 176 TLGQNCINFILNLPLSHRTKTTL 244
>04357
Length = 1093
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 110 NQEPLPEGIFWLLMTGQLPTHAQVDALKHEWQNRGTV 146
+Q + + I+ Q PTHA + KH W ++ T
Sbjct: 1052 DQNNIQQNIYISCYKNQFPTHASTNTCKHSWNSQKTC 942
>25789
Length = 423
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 260 IHCDHEGGNVSAHTTHLVGSALSDPY 285
+H +HE +V++HT ++GSALS Y
Sbjct: 421 LHVNHEA-HVTSHTCRIIGSALSSTY 347
>18897
Length = 845
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 260 IHCDHEGGNVSAHTTHLVGSALSDPYLSYSAGVNGLAG-PLHGLANQEVLKWLL 312
+H G L AL+DP++ Y G+N +AG L L N+E WL+
Sbjct: 175 VHAQDPAGLQKPLKNVLTAFALNDPHVGYCQGLNFVAGLMLIILRNEEKAFWLM 336
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00143690__3702.m00096EF_hand_family_protein
(613 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01678 199 3e-51
03616 147 9e-36
18545 91 1e-18
14945 35 0.10
22063 34 0.15
35311 32 1.1
>01678
Length = 2407
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/390 (33%), Positives = 201/390 (51%), Gaps = 42/390 (10%)
Frame = +2
Query: 245 LQKYLENDRKVLSFNVLWNDT-SLEGGLNYYILNYFLADDTTEIKEIKRHNSGKDAFPLF 303
L+++L++DR VL F W+DT ++ G +++YFLADDT EI+E+ NSG+D+ P+F
Sbjct: 62 LKQFLDHDRHVLRFFCYWDDTDNMFGDPRQMVMHYFLADDTLEIREVIPPNSGRDSAPVF 241
Query: 304 LCRKKLPKEPIMTHYPGMTLKKE--------------------------EYYSPSDLVCG 337
L R +LPK + PG+ + E+Y SD G
Sbjct: 242 LRRGRLPKNIEALNQPGVRTDRTVLNVFGPMGHGGRYILDSLKTGAVHPEFYKDSDFTLG 421
Query: 338 NMVRIYNKDCLIFNCDAYTKEWYLQNMNLQQI-PITLKKEDIKRFY-QPVPPYNGFGSEA 395
+ ++ + ++ +CD +TKE+Y + + P + + PPYNGFGSE
Sbjct: 422 TAINVWGRKFVLCDCDQFTKEYYTTKYGITEFSPCSFGPGGSGGLGKREFPPYNGFGSEE 601
Query: 396 DSLGSVYNLQPKAPRKDINKMYTQDQY-----ILRFEGKLISQNKEDNHRKFIISFFCGD 450
DSL S L PK P++D K +D+ +LRF ++ ++ D R+FIIS+F D
Sbjct: 602 DSLCSCMGLLPKPPKRDFIKFMERDRRGLDSNVLRFLARMDTEKPIDKDRRFIISYFLSD 781
Query: 451 DTIMVYETADKNSGIWGGKFLERMNHNNPINNKPY-TEL-------DFQIGEIIQLGVYR 502
DT++V+E +NSGI GGKFLER P N PY TEL D +G + ++
Sbjct: 782 DTLLVFEPPVRNSGIIGGKFLERGRVKKP-NQMPYSTELSEYYLASDLFVGAAVNFNKHK 958
Query: 503 FQLLRADEYTHKYMKSKPEVFKEADIEYTLNHLRKFATKYKSYDEFMVLLIKNIDPNRRG 562
F L+ ADEY +YM+ P F + +++ L +R + ++ D+ ++ D N G
Sbjct: 959 FILIDADEYAFRYMEEHPLEFPKTNMQRILEKIRSKLS--QNMDDVRSFFTRS-DSNGGG 1129
Query: 563 VIDFNDFVVGLRRLGYNLTYQEIYTLMRYF 592
V D+ F L ++ LT QEI T+ R+F
Sbjct: 1130VADYAQFRQLLIQVDNTLTEQEIMTVARHF 1219
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 148/347 (42%), Gaps = 46/347 (13%)
Frame = +2
Query: 85 WLKYDRQVLRFYCYFQESVVENPYENYRIRKCTLYYYLSDGTIHVNEPKIMNSGIEQG-V 143
+L +DR VLRF+CY+ ++ +N + + R+ ++Y+L+D T+ + E NSG + V
Sbjct: 71 FLDHDRHVLRFFCYWDDT--DNMFGD--PRQMVMHYFLADDTLEIREVIPPNSGRDSAPV 238
Query: 144 FIKRQQIPKQLNST------------------------------------DYYTWEDLNV 167
F++R ++PK + + ++Y D +
Sbjct: 239 FLRRGRLPKNIEALNQPGVRTDRTVLNVFGPMGHGGRYILDSLKTGAVHPEFYKDSDFTL 418
Query: 168 GININLFERVFRIVDCDSFTKEFFVYMGKKMNSPERVPNDAFEAQKTLKDIKIPPP---- 223
G IN++ R F + DCD FTKE++ K E P + PP
Sbjct: 419 GTAINVWGRKFVLCDCDQFTKEYYT---TKYGITEFSPCSFGPGGSGGLGKREFPPYNGF 589
Query: 224 NTKEYNEYNEVKLGGGHPNTGLQKYLENDRKVLSFNVLWNDTSLEGGL-----NYYILNY 278
++E + + + L P K++E DR+ L NVL ++ +I++Y
Sbjct: 590 GSEEDSLCSCMGLLPKPPKRDFIKFMERDRRGLDSNVLRFLARMDTEKPIDKDRRFIISY 769
Query: 279 FLADDTTEIKEIKRHNSGKDAFPLFLCRKKLPKEPIMTHYPGMTLKKEEYYSPSDLVCGN 338
FL+DDT + E NSG FL R ++ K M + + + EYY SDL G
Sbjct: 770 FLSDDTLLVFEPPVRNSGIIGGK-FLERGRVKKPNQMPY----STELSEYYLASDLFVGA 934
Query: 339 MVRIYNKDCLIFNCDAYTKEWYLQNMNLQQIPITLKKEDIKRFYQPV 385
V ++ + D Y + +++ P+ K +++R + +
Sbjct: 935 AVNFNKHKFILIDADEYAFRY------MEEHPLEFPKTNMQRILEKI 1057
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Frame = +2
Query: 71 KAPINDYIPRIQPPWLKYDRQVLRFYCYFQESVVENPYENYRIRKCTLYYYLSDGTIHVN 130
K P D+I ++ D VLRF E P + + R+ + Y+LSD T+ V
Sbjct: 635 KPPKRDFIKFMERDRRGLDSNVLRFLARMD---TEKPID--KDRRFIISYFLSDDTLLVF 799
Query: 131 EPKIMNSGIEQGVFIKR------QQIPKQLNSTDYYTWEDLNVGININLFERVFRIVDCD 184
EP + NSGI G F++R Q+P ++YY DL VG +N + F ++D D
Sbjct: 800 EPPVRNSGIIGGKFLERGRVKKPNQMPYSTELSEYYLASDLFVGAAVNFNKHKFILIDAD 979
Query: 185 SFTKEFFVYM 194
+ F YM
Sbjct: 980 EYA---FRYM 1000
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 42/162 (25%)
Frame = +2
Query: 400 SVYNLQPKAPRKDINKMYTQDQYILRFEGKLISQNKEDNH----RKFIISFFCGDDTIMV 455
S+ L+P + + D+++LRF + DN R+ ++ +F DDT+ +
Sbjct: 23 SMQPLRPYEKHDTLKQFLDHDRHVLRF---FCYWDDTDNMFGDPRQMVMHYFLADDTLEI 193
Query: 456 YETADKNSGI--------------------------------------WGGKFLERMNHN 477
E NSG GG+++
Sbjct: 194 REVIPPNSGRDSAPVFLRRGRLPKNIEALNQPGVRTDRTVLNVFGPMGHGGRYILDSLKT 373
Query: 478 NPINNKPYTELDFQIGEIIQLGVYRFQLLRADEYTHKYMKSK 519
++ + Y + DF +G I + +F L D++T +Y +K
Sbjct: 374 GAVHPEFYKDSDFTLGTAINVWGRKFVLCDCDQFTKEYYTTK 499
>03616
Length = 2372
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 12/252 (4%)
Frame = +2
Query: 298 DAFPLFLCRKKLPKE--PIMTHYPGMTLKK-----EEYYSPSDLVCGNMVRIYNKDCLIF 350
D FP+ + R K+PK+ + + +P + ++ ++Y++P D + G V +Y + L++
Sbjct: 2 DPFPVLIGRHKVPKDRYGVPSSFPAVVMELSDNEIKDYFTPKDFMVGQTVSLYGRRFLVY 181
Query: 351 NCDAYTKEWYLQNMNLQQIPITLKKEDIKRFYQ-PVPPYNGFGSEADSLGSVYNLQPKAP 409
+ D +TK +Y N + P + K + +PPYN FGS DSL S +L P+ P
Sbjct: 182 DTDNFTKAFYYHNFGITDFPKVDTAGNGKGLPKMEIPPYNNFGSLEDSLQSCLSLIPQPP 361
Query: 410 RKDINKMYTQDQYILRFEGKLISQNKEDNHRKFIISFFCGDDTIMVYETADKNSGIWGGK 469
+KD KM D +LRFE + S ED+ R+FIIS+ DD + VYE +NSGI GGK
Sbjct: 362 KKDFIKMLENDHKVLRFEAIMDSLRPEDSGRRFIISYRLADDMLTVYEPQVRNSGIIGGK 541
Query: 470 FLERMNHNNPIN--NKP--YTELDFQIGEIIQLGVYRFQLLRADEYTHKYMKSKPEVFKE 525
FLER P + ++P Y DF IG +I++ +RF + AD + YM+ F
Sbjct: 542 FLERTRVAKPGSAPDRPDYYGPQDFFIGAVIEIFNHRFVITNADAFVLSYMEEHANQFPP 721
Query: 526 ADIEYTLNHLRK 537
A T+N L++
Sbjct: 722 A----TVNSLKE 745
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 100/211 (47%), Gaps = 3/211 (1%)
Frame = +2
Query: 158 DYYTWEDLNVGININLFERVFRIVDCDSFTKEFFVYMGKKMNSPERVPNDAFEAQKTLKD 217
DY+T +D VG ++L+ R F + D D+FTK F+ + + P+ D K L
Sbjct: 110 DYFTPKDFMVGQTVSLYGRRFLVYDTDNFTKAFYYHNFGITDFPK---VDTAGNGKGLPK 280
Query: 218 IKIPPPN---TKEYNEYNEVKLGGGHPNTGLQKYLENDRKVLSFNVLWNDTSLEGGLNYY 274
++IPP N + E + + + L P K LEND KVL F + + E +
Sbjct: 281 MEIPPYNNFGSLEDSLQSCLSLIPQPPKKDFIKMLENDHKVLRFEAIMDSLRPEDSGRRF 460
Query: 275 ILNYFLADDTTEIKEIKRHNSGKDAFPLFLCRKKLPKEPIMTHYPGMTLKKEEYYSPSDL 334
I++Y LADD + E + NSG FL R ++ K PG + +YY P D
Sbjct: 461 IISYRLADDMLTVYEPQVRNSGIIGGK-FLERTRVAK-------PGSAPDRPDYYGPQDF 616
Query: 335 VCGNMVRIYNKDCLIFNCDAYTKEWYLQNMN 365
G ++ I+N +I N DA+ + ++ N
Sbjct: 617 FIGAVIEIFNHRFVITNADAFVLSYMEEHAN 709
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Frame = +2
Query: 58 RMGTPPDLTYGKRKAPINDYIPRI-QPP------WLKYDRQVLRFYCYFQESVVENPYEN 110
+M PP +G + + + I QPP L+ D +VLRF E+++++
Sbjct: 278 KMEIPPYNNFGSLEDSLQSCLSLIPQPPKKDFIKMLENDHKVLRF-----EAIMDSLRPE 442
Query: 111 YRIRKCTLYYYLSDGTIHVNEPKIMNSGIEQGVFIKRQQIPKQLNS---TDYYTWEDLNV 167
R+ + Y L+D + V EP++ NSGI G F++R ++ K ++ DYY +D +
Sbjct: 443 DSGRRFIISYRLADDMLTVYEPQVRNSGIIGGKFLERTRVAKPGSAPDRPDYYGPQDFFI 622
Query: 168 GININLFERVFRIVDCDSFT 187
G I +F F I + D+F
Sbjct: 623 GAVIEIFNHRFVITNADAFV 682
>18545
Length = 478
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Frame = -1
Query: 63 PDLTYGKRK-APINDYIPRIQPPWLKYDRQVLRFYCYFQESVVENPYENYRIRKCTLYYY 121
P LTYG+ K AP D+IP + +D++VL+F Y++++V E+ E +R+R +YYY
Sbjct: 331 PTLTYGQAKQAPPEDFIPAH----VAWDKKVLKFNAYYKQTVHESQNEYFRVRPVDIYYY 164
Query: 122 LSDGTIHVNEPKIMNSGIEQGVFIKRQQIPKQLNSTDYYTWEDLNVGININLFER 176
L D +I V EP + NSG+ QG IKRQ++PK + D + W+D+N G N+ + +
Sbjct: 163 LEDDSIAVIEPHVENSGMPQGKLIKRQRLPKN-DRGDXWHWKDINNGQNVTFYGK 2
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = -1
Query: 393 SEADSLGS-----VYNLQPKAPRKD-INKMYTQDQYILRFEGKLI-----SQNKEDNHRK 441
++ D L S Y +AP +D I D+ +L+F SQN+ R
Sbjct: 361 ADLDQLASFNPTLTYGQAKQAPPEDFIPAHVAWDKKVLKFNAYYKQTVHESQNEYFRVRP 182
Query: 442 FIISFFCGDDTIMVYETADKNSGIWGGKFLERM 474
I ++ DD+I V E +NSG+ GK ++R
Sbjct: 181 VDIYYYLEDDSIAVIEPHVENSGMPQGKLIKRQ 83
>14945
Length = 1337
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 552 LIKNIDPNRRGVIDFNDFV-VGLRRLGYNLTYQEIYTLMRYFDLDENWK 599
+I ID G IDFNDF+ + +++ +EI R FD DE K
Sbjct: 235 MIAEIDKEGTGTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDETGK 381
>22063
Length = 688
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 552 LIKNIDPNRRGVIDFNDFV-VGLRRLGYNLTYQEIYTLMRYFDLDENWK 599
+I ID G IDFNDF+ + +++ +EI R FD DE K
Sbjct: 294 MIAEIDKEGTGTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDETGK 440
>35311
Length = 634
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Frame = +3
Query: 228 YNEYNEVKLGGGHPNTGLQKYLENDRKVLSFNVLWNDTSLEGGLNYYILNYFLADDTTEI 287
+ N + L G +QK RK++S + N+ SLE L IL A T +
Sbjct: 54 FASCNFLSLQGKR*YCQVQKLCFLVRKIISRRIRTNNNSLELPLFTGILFILPAIPTFFL 233
Query: 288 KE--IKRHNSGKDAFPLFLCRKKLP---KEPIMTHYP 319
E I RH D LF R+ + + P++T++P
Sbjct: 234 SENKIHRHREQTDMQKLFFLRQLIANIDESPMLTYFP 344
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|118372191|ref|XP_001019292.1|_EF_hand_family_protein_[Tetrahymena_t
hermophila_SB210]
(167 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
22063 127 1e-50
14945 127 1e-30
14594 119 4e-28
14366 70 3e-13
05237 70 4e-13
18171 70 5e-13
06641 68 2e-12
26610 61 3e-10
01019 58 2e-09
20251 57 2e-09
38338 54 3e-08
17484 50 3e-07
28617 44 3e-05
16255 44 4e-05
03732 43 6e-05
17977 41 2e-04
07385 41 3e-04
07678 39 0.001
32088 38 0.002
08108 37 0.005
19942 35 0.010
00167 35 0.012
19912 35 0.013
01491 35 0.020
22273 33 0.038
26019 33 0.063
33397 32 0.13
02929 32 0.16
27864 30 0.36
01773 30 0.46
13551 30 0.68
01401 27 3.1
15966 27 3.9
>22063
Length = 688
Score = 127 bits (320), Expect(2) = 1e-50, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 75/99 (75%)
Frame = +3
Query: 17 RPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGR 76
+ +LTEEQKQEI+EAFDLFD DG+G IDAKELKVAMRALGF D+EG
Sbjct: 144 KCELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGT 323
Query: 77 GVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGK 115
G I+F DFL +MT KM+E+D ++EILKAFRLFDDD TGK
Sbjct: 324 GTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDETGK 440
Score = 88.2 bits (217), Expect(2) = 1e-50, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 51/54 (94%)
Frame = +1
Query: 114 GKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMKKTNLF 167
KIS +NLKRVA+ELGE +T+EELQEMIDEADRDGDGEI++EEF+RIMKKT+L+
Sbjct: 436 AKISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMKKTSLY 597
>14945
Length = 1337
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 80/113 (70%)
Frame = +1
Query: 17 RPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGR 76
+ +LTEEQKQEI+EAFDLFD DG+G IDAKELKVAMRALGF D+EG
Sbjct: 85 KCELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGT 264
Query: 77 GVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELG 129
G I+F DFL +MT KM+E+D ++EILKAFRLFDDD TGK L L+ + G
Sbjct: 265 GTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDETGKNLLPQLETGGQGAG 423
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 51/54 (94%)
Frame = +2
Query: 114 GKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMKKTNLF 167
KIS +NLKRVA+ELGE +T+EELQEMIDEADRDGDGEI++EEF+RIMKKT+L+
Sbjct: 377 AKISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMKKTSLY 538
>14594
Length = 1014
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 85/142 (59%)
Frame = +3
Query: 20 LTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVI 79
LT+EQ E KEAF LFD DG G I EL MR+LG D +G G I
Sbjct: 423 LTDEQVAEFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTI 602
Query: 80 EFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQE 139
+F++FL +M KM + D +E+ +AFR+FD D G IS L+ V LGE +T+EE+ E
Sbjct: 603 DFEEFLHMMARKMKDTDCEEELREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 782
Query: 140 MIDEADRDGDGEISEEEFVRIM 161
MI EAD DGDG ++ EEFV +M
Sbjct: 783 MIKEADLDGDGMVNYEEFVTMM 848
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Frame = +3
Query: 100 EILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVR 159
E +AF LFD D G I+ L V R LG+ TE ELQ+MI+E D DG+G I EEF+
Sbjct: 444 EFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTIDFEEFLH 623
Query: 160 IMKK 163
+M +
Sbjct: 624 MMAR 635
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +3
Query: 25 KQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDF 84
++E++EAF +FD DG GYI A EL+ M LG D +G G++ +++F
Sbjct: 657 EEELREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADLDGDGMVNYEEF 836
Query: 85 LDLMTVK 91
+ +MT K
Sbjct: 837 VTMMTAK 857
>14366
Length = 499
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 79/148 (53%)
Frame = -3
Query: 14 RVSRPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDR 73
++++ QL +E E++EAF + + I +L + +R++G +
Sbjct: 494 KMAKQQLRQE---ELQEAF-IMNCSPDNTIALNKLGIVVRSIGRAPTESQLKTLTMEFEN 327
Query: 74 EGRGVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMT 133
G+ + Q+ + ++T + D + +AFR+FD + G I+ L+ V LGE ++
Sbjct: 326 RGKRTLTLQEVIAIVTKYEFAPETSDNLREAFRIFDKEGNGMINAAELRHVLTHLGEKLS 147
Query: 134 EEELQEMIDEADRDGDGEISEEEFVRIM 161
+EE+ EMI EAD GDG++S +FV++M
Sbjct: 146 DEEVDEMIREADISGDGQVSYNDFVKVM 63
>05237
Length = 472
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Frame = +3
Query: 94 ERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEIS 153
E D DE+ +AFR+FD D G IS L+ V LGE +T+EE+ EMI EAD DGDG+++
Sbjct: 12 ETDTDDELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 191
Query: 154 EEEFVRIM 161
EEFV++M
Sbjct: 192 YEEFVKMM 215
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +3
Query: 27 EIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFLD 86
E++EAF +FD DG G+I A EL+ M LG D +G G + +++F+
Sbjct: 30 ELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVK 209
Query: 87 LMTVK 91
+MT K
Sbjct: 210MMTTK 224
>18171
Length = 1131
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Frame = +3
Query: 76 RGVIEFQDFLDLMTVKMAERDPRDE---ILKAFRLFDDDNTGKISLKNLKRVARELGEAM 132
+G ++F DFL LM + +DP++E +L+A L D D TG IS L+ V LG+ +
Sbjct: 87 QGKVDFPDFLTLMARTVGSKDPQEEDDAMLEALTLLDKDQTGVISTALLRHVLTTLGDQL 266
Query: 133 TEEELQEMIDEADRDGDGEISEEEFVRIM 161
T EE++E+I EAD++ G++ +EF+++M
Sbjct: 267 TSEEVEELIKEADKEETGQVDYKEFIKMM 353
>06641
Length = 726
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Frame = +1
Query: 25 KQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXX-XXXXXXDREGRGVIEFQD 83
+++I +AFD+FD + +D +E+ +R+LG + E G I F+
Sbjct: 190 QKKITDAFDIFDHEANKTVDVREVGTIIRSLGCCPSEAELHDMLAEIEEEEPTGYIRFEK 369
Query: 84 FLDLMTVKMAERD----PRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQE 139
FL +MT + ER P D+I+KAF++ D + G + + L + E GE T EEL+E
Sbjct: 370 FLPMMTKVLMERRYKAVPEDQIVKAFQVLDVEGRGYLLQEELSKYMTEEGEPFTSEELEE 549
Query: 140 MIDEADRDGDGEISEEEFVRIM 161
M+ +A G I +++ +M
Sbjct: 550 MMSQALDPEKGYIPYKDYASLM 615
>26610
Length = 455
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%)
Frame = +3
Query: 21 TEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIE 80
T K + EAF+LFDTD G I A E+ A+R+LG E G ++
Sbjct: 27 TMSSKDAVSEAFELFDTDNDGKIAASEVGTAIRSLGHVVTDSDLRRLLSKAGIEPHGKVD 206
Query: 81 FQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEM 140
F L+ + + ++ +AF D + +G + L+ + +G+ +T+EE +
Sbjct: 207 MNRFRQLVQ-PLQGVNYTKQLDEAFNTIDKEGSGFVMATELRHLLTHMGDRITDEEFNAL 383
Query: 141 IDEADRDGDGEISEEEFVRIMKK 163
++E + D +G + +EFV+++ +
Sbjct: 384 LEELEVDSNGRVRRKEFVQLLSR 452
>01019
Length = 1705
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +1
Query: 107 LFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIM 161
+FD D G IS L+ V LGE +T+EE+ EMI EAD DGDG+++ EEFV +M
Sbjct: 43 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 207
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 34 LFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFLDLMTVKMA 93
+FD DG G+I A EL+ M LG D +G G + +++F+ +MT K A
Sbjct: 43 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK*A 222
>20251
Length = 2203
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%)
Frame = +3
Query: 22 EEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEF 81
+ Q QE KEAF++ D + G+ID ++L + +LG G I F
Sbjct: 147 QSQIQEFKEAFNMIDQNRDGFIDKEDLGDMLASLG----KNPTEGQLDEMMNXAPGPINF 314
Query: 82 QDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMI 141
FL + K+ DP D I AF FD+D G I L+ + +G+ T++E+ EM
Sbjct: 315 TMFLTMFGDKLNGTDPEDVIKNAFACFDEDGKGVIQEDRLRELLTTMGDRFTDDEVDEMF 494
Query: 142 DEADRDGDGEISEEEFVRIMK 162
+A G EF RI+K
Sbjct: 495 RDAPIK-RGNFDYLEFTRILK 554
>38338
Length = 463
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Frame = -2
Query: 100 EILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEI 152
E +AF LFD D G I+ K L V R LG+ TE ELQ+MI+E D DG+G I
Sbjct: 165 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 7
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 33/63 (52%)
Frame = -2
Query: 19 QLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGV 78
QLTEEQ E KEAF LFD DG G I KEL MR+LG D +G G
Sbjct: 189 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 10
Query: 79 IEF 81
I+F
Sbjct: 9 IDF 1
>17484
Length = 471
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = -3
Query: 82 QDFLDLMTVKMAERDPRD-EILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEM 140
++FL L+ +M +D E+ AFR FD + G IS+ L++ ++G+ +++ +++ +
Sbjct: 325 EEFLPLIVGRMKGGSEKDKEMRDAFRAFDQNGDGVISISELRQAMAKMGQKLSDADVESI 146
Query: 141 IDEADRDGDGEISEEEFVRIM 161
I + D+DGDG ++ EEF + +
Sbjct: 145 IRDVDKDGDGFVNYEEFTKFI 83
>28617
Length = 348
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Frame = -2
Query: 137 LQEMIDEADRDGDGEISEEEFVRIMKKTNLF 167
+EM++EAD +GDG+I + EF+RIM +TNLF
Sbjct: 344 WREMVEEADVNGDGQIDQSEFIRIMLQTNLF 252
>16255
Length = 767
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = -2
Query: 128 LGEAMTEEELQEMIDEADRDGDGEISEEEFVRIM 161
LGE +T+EE+ EMI EAD DGDG+++ EEFV +M
Sbjct: 757 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 656
>03732
Length = 1114
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%)
Frame = -1
Query: 27 EIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFLD 86
+ + F +D D +G ID ELK A+ G+ DR+G+G + F DF+
Sbjct: 898 DWQNCFRSYDRDNSGSIDRNELKNALTGFGYRLSDRFFDVLVKKFDRQGKGTVAFDDFIQ 719
Query: 87 LMTVKMAERDPRDEILKAFRLFDDDNTGKISLK 119
V + +FR D D G I +
Sbjct: 718 CCVVLQT-------LTTSFRTHDQDQDGWIQIS 641
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = -1
Query: 72 DREGRGVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEA 131
DR+ G I FQ+F L ++ FR +D DN+G I LK G
Sbjct: 961 DRDNSGTINFQEFQALWKYVTDWQN-------CFRSYDRDNSGSIDRNELKNALTGFGYR 803
Query: 132 MTEEELQEMIDEADRDGDGEISEEEFVRIM 161
+++ ++ + DR G G ++ ++F++
Sbjct: 802 LSDRFFDVLVKKFDRQGKGTVAFDDFIQCC 713
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 105 FRLFDDDNTGKISLKNLKR-VARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMK 162
F+ D D +G IS+ L++ ++ E ++ MI DRD G I+ +EF + K
Sbjct: 1084 FQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEFQALWK 908
>17977
Length = 445
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +3
Query: 100 EILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVR 159
++++AFR +D D GKI + +L+ R+ + L+++ D D + DG+I EF
Sbjct: 222 DLIRAFRFYDKDGKGKIDIDDLREACRKFDVPIDVWLLEQVFDYCDENRDGQIDYLEFAN 401
Query: 160 IM 161
+
Sbjct: 402 FL 407
>07385
Length = 1292
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 132 MTEEELQEMIDEADRDGDGEISEEEFVRIM 161
+T+EE+ EMI EAD DGDG+++ EEFV++M
Sbjct: 153 LTDEEVDEMIREADIDGDGQVNYEEFVKMM 242
>07678
Length = 958
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Frame = +1
Query: 9 PVKSTRVSRPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXX-XXXXX 67
PV+ R++ + + F + D DG +D KE K + G
Sbjct: 268 PVEKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEM 447
Query: 68 XXXXDREGRGVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARE 127
D++ G I+F +FL + M++ +D I +AF+ D G +++++LK V
Sbjct: 448 FTCFDKDZSGTIDFDEFLVKLRPPMSQM-RKDLIQRAFQKLDKTGDGVVTVEDLKGVYNV 624
Query: 128 L-------GEAMTEEELQEMIDEAD--RDGDGEISEEEF 157
GE E L+ +D D D DG+I++EEF
Sbjct: 625 TKHPKYLNGEWTEERILRIFLDSFDSPNDKDGKITKEEF 741
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 101 ILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEE-LQEMIDEADRDGDGEISEEEFV 158
+ + F++ DDD + K K+ E G E + +QEM D+D G I +EF+
Sbjct: 325 LARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEMFTCFDKDZSGTIDFDEFL 501
>32088
Length = 1928
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +1
Query: 91 KMAER-------DPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDE 143
KMA+R D E+ F DDDN G IS L R +G + EL+ ++ +
Sbjct: 898 KMAKRHTVALDEDQLTELRSVFDSIDDDNNGHISXGELDSAFRAVGLNIPGYELRTIMSK 1077
Query: 144 ADRDGDGEISEEEF 157
D GDG ++ +EF
Sbjct: 1078YDASGDGRLNMDEF 1119
>08108
Length = 818
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Frame = +2
Query: 9 PVKSTRVSR---PQLTEE--QKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXX 63
PV +R S QLT E + AF +FDTDG+G I A EL A+RA G
Sbjct: 59 PVSLSRQSHRHSIQLTMAPLTDAECQTAFAVFDTDGSGSISAGELGEALRAQGADITDDQ 238
Query: 64 XXXXXXXXDREGRGVIEFQDFLDLMTVKM-AERDPRDEILKAFRLFDDDNTGKISLKNLK 122
D + G I+ +F L+ + R + ++ F+ D D G+I+ +
Sbjct: 239 TAELIKKYDSDSNGDIDTDEFRKLVEGESDVARLAQSALM--FKSLDADGDGQITASEIT 412
Query: 123 RVARELGEAMTEEELQEMIDEA 144
+ T+ + M++ A
Sbjct: 413 EAQGKKTIGATDGQFAAMVEAA 478
>19942
Length = 367
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 124 VARELGEAMTEEELQEMIDEADRDGDGEIS 153
V LGE +T+EE+ EMI EAD DGDG+++
Sbjct: 2 VMTNLGEKLTDEEVDEMIREADIDGDGQVN 91
>00167
Length = 2176
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 101 ILKAFRLFDDDNTGKISLKNLKRVARELGEA-MTEEELQEMIDEADRDGDGEISEEEFVR 159
I + FR+ DD+ K+S+ RE A MT EEL E+ D+DG G + EEF+
Sbjct: 735 IGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVFRRFDKDGTGTLDFEEFLL 914
Query: 160 IMK-KTNLF 167
++ K N F
Sbjct: 915 ALRPKMNEF 941
>19912
Length = 865
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 105 FRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFV 158
F FD + T I+ ++ E + +E+ ++DE DRDGDGEI+ E V
Sbjct: 686 FNKFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLDELDRDGDGEINYSELV 847
>01491
Length = 1707
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 12 STRVSRPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGF 57
S +S Q+TE+ + + F LFD G G + KEL ++LG
Sbjct: 86 SANMSTFQITEKMYNDASQTFHLFDKKGNGTVSTKELANVFKSLGL 223
>22273
Length = 297
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 137 LQEMIDEADRDGDGEISEEEFVRIM 161
+ EMI EAD DGDG+++ EEFV++M
Sbjct: 1 VDEMIREADIDGDGQVNYEEFVKMM 75
>26019
Length = 1561
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 4/151 (2%)
Frame = +2
Query: 15 VSRPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDRE 74
+S P+L +Q ++ D+FDTDG G +D KE
Sbjct: 167 MSLPEL--QQNPLVQRVIDIFDTDGNGEVDFKEFI------------------------- 265
Query: 75 GRGVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVAREL-GEAMT 133
G+ +F + D ++ AF+++D D G IS L +V + + G +
Sbjct: 266 -EGISQFS----------VKGDKESKLRFAFKIYDMDKDGYISNGELFQVLKMMVGNNLK 412
Query: 134 EEELQEMIDEADR---DGDGEISEEEFVRIM 161
+ +LQ+++D+ EIS EEF ++
Sbjct: 413 DTQLQQIVDKPSSMRTPTVMEISFEEFCAVV 505
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 103 KAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFV 158
K FR D DN+G +S+ L E +Q +ID D DG+GE+ +EF+
Sbjct: 110 KRFRKLDLDNSGSLSIDEF----MSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFI 265
>33397
Length = 1723
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 76 RGVIEFQDFLDLMTVKMAERDPRD-EILKAFRLFDDDNTGKISLKNLKRV 124
G+I F D++ L+TV PR+ EI AFR+FD + G++ L+ RV
Sbjct: 132 HGLISFSDYIFLLTV--LSTPPRNFEI--AFRMFDINGDGELDLEEFNRV 269
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 120 NLKRVARELGEA-MTEEELQEMIDEADRDGDGEISEEEFVRIMKK 163
VA+ + A +TE + + D + DGE+S +EFV +MK+
Sbjct: 716 TFHHVAKTVAMADLTEHVIDVVFTLFDENNDGELSNKEFVSVMKR 850
>02929
Length = 1353
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 19 QLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGV 78
+ + +K + + F D DG G++ +E M F DRE RG+
Sbjct: 155 KWIQAKKFRVTDFFRRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIFDREKRGL 334
Query: 79 IEFQDFLDLM 88
IE++DF+D +
Sbjct: 335 IEYKDFVDAL 364
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 145 DRDGDGEISEEEFVRIMKKT 164
D+DGDG ++EEEFV M ++
Sbjct: 206 DKDGDGFLTEEEFVNGMMQS 265
>27864
Length = 343
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +1
Query: 32 FDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXX-DREGRGVIEFQDFLDLMTV 90
F D D +G I EL+ A+ + DR+ G I FQ+F L
Sbjct: 31 FQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEFQALWKY 210
Query: 91 KMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELG 129
++ FR +D DN+G I LK +LG
Sbjct: 211 VTDWQN-------CFRSYDRDNSGSIDRNELKMPXPDLG 306
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 105 FRLFDDDNTGKISLKNLKR-VARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMK 162
F+ D D +G IS+ L++ ++ E ++ MI DRD G I+ +EF + K
Sbjct: 31 FQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEFQALWK 207
>01773
Length = 1950
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Frame = +1
Query: 21 TEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDR-EGRGVI 79
T+ KQ KEA D + GY++ KEL+ + G D G I
Sbjct: 151 TDAYKQLFKEA----DKNNDGYLEIKELRELFKRNGSSLSDSQIADTFVFFDGPRGDKRI 318
Query: 80 EFQDFLD------LMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMT 133
F+ F + K+AE F+ D G + LK + E G+ T
Sbjct: 319 TFEXFCKGLDQIVMFVQKLAE---------LFKAKDKSGDGYLDRDELKALLDESGQKFT 471
Query: 134 EEELQEMIDEADRDGDGEISEEEFV 158
+++ ++ AD++ D +I EEFV
Sbjct: 472 ADDVSAILKSADKNNDNKICFEEFV 546
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +1
Query: 26 QEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFL 85
Q++ E F D G GY+D ELK + G D+ I F++F+
Sbjct: 367 QKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 546
Query: 86 DLMT 89
D T
Sbjct: 547 DACT 558
>13551
Length = 529
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 113 TGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMKK 163
T K++ +K + R +GE + E ++ + + E D++ DG + EEF + KK
Sbjct: 10 TKKLNKNGVKLLFRFMGEIVNEVKVTQWLREEDKNVDGCLDFEEFCALYKK 162
>01401
Length = 1454
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 126 RELGEAMTEEELQEMIDEADRDGDGE-ISEEEFVRIM 161
+E+G A++ + +Q+++ D+D E I EEF+R+M
Sbjct: 133 KEMGVAISADRIQQLLTALDKDSKDEVIDYEEFLRVM 243
>15966
Length = 362
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 26 QEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFL 85
Q++ E F D G GY+D ELK + G D+ I F++F+
Sbjct: 134 QKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 313
Query: 86 DLMT 89
D T
Sbjct: 314 DACT 325
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|7672693|gb|AAF66602.1|AF141944_1_centrin_[Tetrahymena_thermophila]
(167 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
22063 127 1e-50
14945 127 1e-30
14594 119 4e-28
14366 70 3e-13
05237 70 4e-13
18171 70 5e-13
06641 68 2e-12
26610 61 3e-10
01019 58 2e-09
20251 57 2e-09
38338 54 3e-08
17484 50 3e-07
28617 44 3e-05
16255 44 4e-05
03732 43 6e-05
17977 41 2e-04
07385 41 3e-04
07678 39 0.001
32088 38 0.002
08108 37 0.005
19942 35 0.010
00167 35 0.012
19912 35 0.013
01491 35 0.020
22273 33 0.038
26019 33 0.063
33397 32 0.13
02929 32 0.16
27864 30 0.36
01773 30 0.46
13551 30 0.68
01401 27 3.1
15966 27 3.9
>22063
Length = 688
Score = 127 bits (320), Expect(2) = 1e-50, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 75/99 (75%)
Frame = +3
Query: 17 RPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGR 76
+ +LTEEQKQEI+EAFDLFD DG+G IDAKELKVAMRALGF D+EG
Sbjct: 144 KCELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGT 323
Query: 77 GVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGK 115
G I+F DFL +MT KM+E+D ++EILKAFRLFDDD TGK
Sbjct: 324 GTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDETGK 440
Score = 88.2 bits (217), Expect(2) = 1e-50, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 51/54 (94%)
Frame = +1
Query: 114 GKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMKKTNLF 167
KIS +NLKRVA+ELGE +T+EELQEMIDEADRDGDGEI++EEF+RIMKKT+L+
Sbjct: 436 AKISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMKKTSLY 597
>14945
Length = 1337
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 80/113 (70%)
Frame = +1
Query: 17 RPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGR 76
+ +LTEEQKQEI+EAFDLFD DG+G IDAKELKVAMRALGF D+EG
Sbjct: 85 KCELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGT 264
Query: 77 GVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELG 129
G I+F DFL +MT KM+E+D ++EILKAFRLFDDD TGK L L+ + G
Sbjct: 265 GTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDETGKNLLPQLETGGQGAG 423
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 51/54 (94%)
Frame = +2
Query: 114 GKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMKKTNLF 167
KIS +NLKRVA+ELGE +T+EELQEMIDEADRDGDGEI++EEF+RIMKKT+L+
Sbjct: 377 AKISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMKKTSLY 538
>14594
Length = 1014
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 85/142 (59%)
Frame = +3
Query: 20 LTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVI 79
LT+EQ E KEAF LFD DG G I EL MR+LG D +G G I
Sbjct: 423 LTDEQVAEFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTI 602
Query: 80 EFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQE 139
+F++FL +M KM + D +E+ +AFR+FD D G IS L+ V LGE +T+EE+ E
Sbjct: 603 DFEEFLHMMARKMKDTDCEEELREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 782
Query: 140 MIDEADRDGDGEISEEEFVRIM 161
MI EAD DGDG ++ EEFV +M
Sbjct: 783 MIKEADLDGDGMVNYEEFVTMM 848
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Frame = +3
Query: 100 EILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVR 159
E +AF LFD D G I+ L V R LG+ TE ELQ+MI+E D DG+G I EEF+
Sbjct: 444 EFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTIDFEEFLH 623
Query: 160 IMKK 163
+M +
Sbjct: 624 MMAR 635
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +3
Query: 25 KQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDF 84
++E++EAF +FD DG GYI A EL+ M LG D +G G++ +++F
Sbjct: 657 EEELREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADLDGDGMVNYEEF 836
Query: 85 LDLMTVK 91
+ +MT K
Sbjct: 837 VTMMTAK 857
>14366
Length = 499
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 79/148 (53%)
Frame = -3
Query: 14 RVSRPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDR 73
++++ QL +E E++EAF + + I +L + +R++G +
Sbjct: 494 KMAKQQLRQE---ELQEAF-IMNCSPDNTIALNKLGIVVRSIGRAPTESQLKTLTMEFEN 327
Query: 74 EGRGVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMT 133
G+ + Q+ + ++T + D + +AFR+FD + G I+ L+ V LGE ++
Sbjct: 326 RGKRTLTLQEVIAIVTKYEFAPETSDNLREAFRIFDKEGNGMINAAELRHVLTHLGEKLS 147
Query: 134 EEELQEMIDEADRDGDGEISEEEFVRIM 161
+EE+ EMI EAD GDG++S +FV++M
Sbjct: 146 DEEVDEMIREADISGDGQVSYNDFVKVM 63
>05237
Length = 472
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Frame = +3
Query: 94 ERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEIS 153
E D DE+ +AFR+FD D G IS L+ V LGE +T+EE+ EMI EAD DGDG+++
Sbjct: 12 ETDTDDELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 191
Query: 154 EEEFVRIM 161
EEFV++M
Sbjct: 192 YEEFVKMM 215
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +3
Query: 27 EIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFLD 86
E++EAF +FD DG G+I A EL+ M LG D +G G + +++F+
Sbjct: 30 ELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVK 209
Query: 87 LMTVK 91
+MT K
Sbjct: 210MMTTK 224
>18171
Length = 1131
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Frame = +3
Query: 76 RGVIEFQDFLDLMTVKMAERDPRDE---ILKAFRLFDDDNTGKISLKNLKRVARELGEAM 132
+G ++F DFL LM + +DP++E +L+A L D D TG IS L+ V LG+ +
Sbjct: 87 QGKVDFPDFLTLMARTVGSKDPQEEDDAMLEALTLLDKDQTGVISTALLRHVLTTLGDQL 266
Query: 133 TEEELQEMIDEADRDGDGEISEEEFVRIM 161
T EE++E+I EAD++ G++ +EF+++M
Sbjct: 267 TSEEVEELIKEADKEETGQVDYKEFIKMM 353
>06641
Length = 726
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Frame = +1
Query: 25 KQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXX-XXXXXXDREGRGVIEFQD 83
+++I +AFD+FD + +D +E+ +R+LG + E G I F+
Sbjct: 190 QKKITDAFDIFDHEANKTVDVREVGTIIRSLGCCPSEAELHDMLAEIEEEEPTGYIRFEK 369
Query: 84 FLDLMTVKMAERD----PRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQE 139
FL +MT + ER P D+I+KAF++ D + G + + L + E GE T EEL+E
Sbjct: 370 FLPMMTKVLMERRYKAVPEDQIVKAFQVLDVEGRGYLLQEELSKYMTEEGEPFTSEELEE 549
Query: 140 MIDEADRDGDGEISEEEFVRIM 161
M+ +A G I +++ +M
Sbjct: 550 MMSQALDPEKGYIPYKDYASLM 615
>26610
Length = 455
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%)
Frame = +3
Query: 21 TEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIE 80
T K + EAF+LFDTD G I A E+ A+R+LG E G ++
Sbjct: 27 TMSSKDAVSEAFELFDTDNDGKIAASEVGTAIRSLGHVVTDSDLRRLLSKAGIEPHGKVD 206
Query: 81 FQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEM 140
F L+ + + ++ +AF D + +G + L+ + +G+ +T+EE +
Sbjct: 207 MNRFRQLVQ-PLQGVNYTKQLDEAFNTIDKEGSGFVMATELRHLLTHMGDRITDEEFNAL 383
Query: 141 IDEADRDGDGEISEEEFVRIMKK 163
++E + D +G + +EFV+++ +
Sbjct: 384 LEELEVDSNGRVRRKEFVQLLSR 452
>01019
Length = 1705
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +1
Query: 107 LFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIM 161
+FD D G IS L+ V LGE +T+EE+ EMI EAD DGDG+++ EEFV +M
Sbjct: 43 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 207
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +1
Query: 34 LFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFLDLMTVKMA 93
+FD DG G+I A EL+ M LG D +G G + +++F+ +MT K A
Sbjct: 43 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK*A 222
>20251
Length = 2203
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%)
Frame = +3
Query: 22 EEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEF 81
+ Q QE KEAF++ D + G+ID ++L + +LG G I F
Sbjct: 147 QSQIQEFKEAFNMIDQNRDGFIDKEDLGDMLASLG----KNPTEGQLDEMMNXAPGPINF 314
Query: 82 QDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMI 141
FL + K+ DP D I AF FD+D G I L+ + +G+ T++E+ EM
Sbjct: 315 TMFLTMFGDKLNGTDPEDVIKNAFACFDEDGKGVIQEDRLRELLTTMGDRFTDDEVDEMF 494
Query: 142 DEADRDGDGEISEEEFVRIMK 162
+A G EF RI+K
Sbjct: 495 RDAPIK-RGNFDYLEFTRILK 554
>38338
Length = 463
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Frame = -2
Query: 100 EILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEI 152
E +AF LFD D G I+ K L V R LG+ TE ELQ+MI+E D DG+G I
Sbjct: 165 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 7
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 33/63 (52%)
Frame = -2
Query: 19 QLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGV 78
QLTEEQ E KEAF LFD DG G I KEL MR+LG D +G G
Sbjct: 189 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 10
Query: 79 IEF 81
I+F
Sbjct: 9 IDF 1
>17484
Length = 471
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = -3
Query: 82 QDFLDLMTVKMAERDPRD-EILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEM 140
++FL L+ +M +D E+ AFR FD + G IS+ L++ ++G+ +++ +++ +
Sbjct: 325 EEFLPLIVGRMKGGSEKDKEMRDAFRAFDQNGDGVISISELRQAMAKMGQKLSDADVESI 146
Query: 141 IDEADRDGDGEISEEEFVRIM 161
I + D+DGDG ++ EEF + +
Sbjct: 145 IRDVDKDGDGFVNYEEFTKFI 83
>28617
Length = 348
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Frame = -2
Query: 137 LQEMIDEADRDGDGEISEEEFVRIMKKTNLF 167
+EM++EAD +GDG+I + EF+RIM +TNLF
Sbjct: 344 WREMVEEADVNGDGQIDQSEFIRIMLQTNLF 252
>16255
Length = 767
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = -2
Query: 128 LGEAMTEEELQEMIDEADRDGDGEISEEEFVRIM 161
LGE +T+EE+ EMI EAD DGDG+++ EEFV +M
Sbjct: 757 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 656
>03732
Length = 1114
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%)
Frame = -1
Query: 27 EIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFLD 86
+ + F +D D +G ID ELK A+ G+ DR+G+G + F DF+
Sbjct: 898 DWQNCFRSYDRDNSGSIDRNELKNALTGFGYRLSDRFFDVLVKKFDRQGKGTVAFDDFIQ 719
Query: 87 LMTVKMAERDPRDEILKAFRLFDDDNTGKISLK 119
V + +FR D D G I +
Sbjct: 718 CCVVLQT-------LTTSFRTHDQDQDGWIQIS 641
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = -1
Query: 72 DREGRGVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEA 131
DR+ G I FQ+F L ++ FR +D DN+G I LK G
Sbjct: 961 DRDNSGTINFQEFQALWKYVTDWQN-------CFRSYDRDNSGSIDRNELKNALTGFGYR 803
Query: 132 MTEEELQEMIDEADRDGDGEISEEEFVRIM 161
+++ ++ + DR G G ++ ++F++
Sbjct: 802 LSDRFFDVLVKKFDRQGKGTVAFDDFIQCC 713
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 105 FRLFDDDNTGKISLKNLKR-VARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMK 162
F+ D D +G IS+ L++ ++ E ++ MI DRD G I+ +EF + K
Sbjct: 1084 FQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEFQALWK 908
>17977
Length = 445
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +3
Query: 100 EILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVR 159
++++AFR +D D GKI + +L+ R+ + L+++ D D + DG+I EF
Sbjct: 222 DLIRAFRFYDKDGKGKIDIDDLREACRKFDVPIDVWLLEQVFDYCDENRDGQIDYLEFAN 401
Query: 160 IM 161
+
Sbjct: 402 FL 407
>07385
Length = 1292
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +3
Query: 132 MTEEELQEMIDEADRDGDGEISEEEFVRIM 161
+T+EE+ EMI EAD DGDG+++ EEFV++M
Sbjct: 153 LTDEEVDEMIREADIDGDGQVNYEEFVKMM 242
>07678
Length = 958
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Frame = +1
Query: 9 PVKSTRVSRPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXX-XXXXX 67
PV+ R++ + + F + D DG +D KE K + G
Sbjct: 268 PVEKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEM 447
Query: 68 XXXXDREGRGVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARE 127
D++ G I+F +FL + M++ +D I +AF+ D G +++++LK V
Sbjct: 448 FTCFDKDZSGTIDFDEFLVKLRPPMSQM-RKDLIQRAFQKLDKTGDGVVTVEDLKGVYNV 624
Query: 128 L-------GEAMTEEELQEMIDEAD--RDGDGEISEEEF 157
GE E L+ +D D D DG+I++EEF
Sbjct: 625 TKHPKYLNGEWTEERILRIFLDSFDSPNDKDGKITKEEF 741
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 101 ILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEE-LQEMIDEADRDGDGEISEEEFV 158
+ + F++ DDD + K K+ E G E + +QEM D+D G I +EF+
Sbjct: 325 LARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEMFTCFDKDZSGTIDFDEFL 501
>32088
Length = 1928
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +1
Query: 91 KMAER-------DPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDE 143
KMA+R D E+ F DDDN G IS L R +G + EL+ ++ +
Sbjct: 898 KMAKRHTVALDEDQLTELRSVFDSIDDDNNGHISXGELDSAFRAVGLNIPGYELRTIMSK 1077
Query: 144 ADRDGDGEISEEEF 157
D GDG ++ +EF
Sbjct: 1078YDASGDGRLNMDEF 1119
>08108
Length = 818
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Frame = +2
Query: 9 PVKSTRVSR---PQLTEE--QKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXX 63
PV +R S QLT E + AF +FDTDG+G I A EL A+RA G
Sbjct: 59 PVSLSRQSHRHSIQLTMAPLTDAECQTAFAVFDTDGSGSISAGELGEALRAQGADITDDQ 238
Query: 64 XXXXXXXXDREGRGVIEFQDFLDLMTVKM-AERDPRDEILKAFRLFDDDNTGKISLKNLK 122
D + G I+ +F L+ + R + ++ F+ D D G+I+ +
Sbjct: 239 TAELIKKYDSDSNGDIDTDEFRKLVEGESDVARLAQSALM--FKSLDADGDGQITASEIT 412
Query: 123 RVARELGEAMTEEELQEMIDEA 144
+ T+ + M++ A
Sbjct: 413 EAQGKKTIGATDGQFAAMVEAA 478
>19942
Length = 367
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2
Query: 124 VARELGEAMTEEELQEMIDEADRDGDGEIS 153
V LGE +T+EE+ EMI EAD DGDG+++
Sbjct: 2 VMTNLGEKLTDEEVDEMIREADIDGDGQVN 91
>00167
Length = 2176
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 101 ILKAFRLFDDDNTGKISLKNLKRVARELGEA-MTEEELQEMIDEADRDGDGEISEEEFVR 159
I + FR+ DD+ K+S+ RE A MT EEL E+ D+DG G + EEF+
Sbjct: 735 IGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVFRRFDKDGTGTLDFEEFLL 914
Query: 160 IMK-KTNLF 167
++ K N F
Sbjct: 915 ALRPKMNEF 941
>19912
Length = 865
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 105 FRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFV 158
F FD + T I+ ++ E + +E+ ++DE DRDGDGEI+ E V
Sbjct: 686 FNKFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLDELDRDGDGEINYSELV 847
>01491
Length = 1707
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 12 STRVSRPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGF 57
S +S Q+TE+ + + F LFD G G + KEL ++LG
Sbjct: 86 SANMSTFQITEKMYNDASQTFHLFDKKGNGTVSTKELANVFKSLGL 223
>22273
Length = 297
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 137 LQEMIDEADRDGDGEISEEEFVRIM 161
+ EMI EAD DGDG+++ EEFV++M
Sbjct: 1 VDEMIREADIDGDGQVNYEEFVKMM 75
>26019
Length = 1561
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 4/151 (2%)
Frame = +2
Query: 15 VSRPQLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDRE 74
+S P+L +Q ++ D+FDTDG G +D KE
Sbjct: 167 MSLPEL--QQNPLVQRVIDIFDTDGNGEVDFKEFI------------------------- 265
Query: 75 GRGVIEFQDFLDLMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVAREL-GEAMT 133
G+ +F + D ++ AF+++D D G IS L +V + + G +
Sbjct: 266 -EGISQFS----------VKGDKESKLRFAFKIYDMDKDGYISNGELFQVLKMMVGNNLK 412
Query: 134 EEELQEMIDEADR---DGDGEISEEEFVRIM 161
+ +LQ+++D+ EIS EEF ++
Sbjct: 413 DTQLQQIVDKPSSMRTPTVMEISFEEFCAVV 505
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 103 KAFRLFDDDNTGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFV 158
K FR D DN+G +S+ L E +Q +ID D DG+GE+ +EF+
Sbjct: 110 KRFRKLDLDNSGSLSIDEF----MSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFI 265
>33397
Length = 1723
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 76 RGVIEFQDFLDLMTVKMAERDPRD-EILKAFRLFDDDNTGKISLKNLKRV 124
G+I F D++ L+TV PR+ EI AFR+FD + G++ L+ RV
Sbjct: 132 HGLISFSDYIFLLTV--LSTPPRNFEI--AFRMFDINGDGELDLEEFNRV 269
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 120 NLKRVARELGEA-MTEEELQEMIDEADRDGDGEISEEEFVRIMKK 163
VA+ + A +TE + + D + DGE+S +EFV +MK+
Sbjct: 716 TFHHVAKTVAMADLTEHVIDVVFTLFDENNDGELSNKEFVSVMKR 850
>02929
Length = 1353
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 19 QLTEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGV 78
+ + +K + + F D DG G++ +E M F DRE RG+
Sbjct: 155 KWIQAKKFRVTDFFRRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIFDREKRGL 334
Query: 79 IEFQDFLDLM 88
IE++DF+D +
Sbjct: 335 IEYKDFVDAL 364
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 145 DRDGDGEISEEEFVRIMKKT 164
D+DGDG ++EEEFV M ++
Sbjct: 206 DKDGDGFLTEEEFVNGMMQS 265
>27864
Length = 343
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +1
Query: 32 FDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXX-DREGRGVIEFQDFLDLMTV 90
F D D +G I EL+ A+ + DR+ G I FQ+F L
Sbjct: 31 FQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEFQALWKY 210
Query: 91 KMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELG 129
++ FR +D DN+G I LK +LG
Sbjct: 211 VTDWQN-------CFRSYDRDNSGSIDRNELKMPXPDLG 306
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 105 FRLFDDDNTGKISLKNLKR-VARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMK 162
F+ D D +G IS+ L++ ++ E ++ MI DRD G I+ +EF + K
Sbjct: 31 FQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEFQALWK 207
>01773
Length = 1950
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Frame = +1
Query: 21 TEEQKQEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDR-EGRGVI 79
T+ KQ KEA D + GY++ KEL+ + G D G I
Sbjct: 151 TDAYKQLFKEA----DKNNDGYLEIKELRELFKRNGSSLSDSQIADTFVFFDGPRGDKRI 318
Query: 80 EFQDFLD------LMTVKMAERDPRDEILKAFRLFDDDNTGKISLKNLKRVARELGEAMT 133
F+ F + K+AE F+ D G + LK + E G+ T
Sbjct: 319 TFEXFCKGLDQIVMFVQKLAE---------LFKAKDKSGDGYLDRDELKALLDESGQKFT 471
Query: 134 EEELQEMIDEADRDGDGEISEEEFV 158
+++ ++ AD++ D +I EEFV
Sbjct: 472 ADDVSAILKSADKNNDNKICFEEFV 546
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +1
Query: 26 QEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFL 85
Q++ E F D G GY+D ELK + G D+ I F++F+
Sbjct: 367 QKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 546
Query: 86 DLMT 89
D T
Sbjct: 547 DACT 558
>13551
Length = 529
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 113 TGKISLKNLKRVARELGEAMTEEELQEMIDEADRDGDGEISEEEFVRIMKK 163
T K++ +K + R +GE + E ++ + + E D++ DG + EEF + KK
Sbjct: 10 TKKLNKNGVKLLFRFMGEIVNEVKVTQWLREEDKNVDGCLDFEEFCALYKK 162
>01401
Length = 1454
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 126 RELGEAMTEEELQEMIDEADRDGDGE-ISEEEFVRIM 161
+E+G A++ + +Q+++ D+D E I EEF+R+M
Sbjct: 133 KEMGVAISADRIQQLLTALDKDSKDEVIDYEEFLRVM 243
>15966
Length = 362
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 26 QEIKEAFDLFDTDGTGYIDAKELKVAMRALGFXXXXXXXXXXXXXXDREGRGVIEFQDFL 85
Q++ E F D G GY+D ELK + G D+ I F++F+
Sbjct: 134 QKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 313
Query: 86 DLMT 89
D T
Sbjct: 314 DACT 325
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00056140__3707.m00043glutaminyl-
tRNA_synthetase_family_protein
(775 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05674 197 1e-50
>05674
Length = 1437
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/300 (38%), Positives = 175/300 (58%), Gaps = 8/300 (2%)
Frame = -1
Query: 475 EFSRLNVSNTVLSKRKLQALVFGNHVKGWDDPRLLTIQGMRRRGYTPEGINAFCDLVSVT 534
E+ RLN+ V+SKRK+ L+ V+ WDDPRL T+ +RRRG+ E IN FC V VT
Sbjct: 1437 EYGRLNLHYAVVSKRKIGKLITEGFVRNWDDPRLFTLTALRRRGFPSEAINYFCAKVGVT 1258
Query: 535 RNGNENVIGFQLLEHCIRKDLDNTTKRTMAVIDPVKVTITNLPDTYEQVLEAPDFPTQVE 594
+ VI +LE C+R+ L+ R MAV+DP+KV I N P + + P+FP
Sbjct: 1257 MA--KTVIDPVMLEACVREVLNVKAPRAMAVLDPLKVVIQNFPADHSGEVTVPNFPADES 1084
Query: 595 RGSHKISFTNSVYVEREDTQLKDHKDFFGLAPGKVVGLKYAGVVKCID--VKAKDGVVTE 652
+GSHK+ T+ +++ER D + + K++ LA + VGL++AG+V ++ VK DG V E
Sbjct: 1083 KGSHKVPLTSIIFIERSDFREEADKNYKRLAVNQTVGLRHAGLVISVESVVKDADGQVAE 904
Query: 653 VVAEFIK-DDPPKPKTYLNWVSAKEAFDCEVRIYNSLF----TEDPTSSDKEFLELLNPN 707
+V + + + KPK +++WVS + CE+R+Y++LF EDP+ FL +N +
Sbjct: 903 LVVKCVNATETSKPKAFIHWVS--QPLHCEIRLYDTLFYHKNPEDPSEVPGGFLTDVNKD 730
Query: 708 SLVFKSGAKINKNIIPELQHLSRFQFERQGYFAIDFDSDITKKTFVWNKIVGL-SDTGKQ 766
SL A ++ N + + +FQFER G+F++D DS K V+N+ V L D GK
Sbjct: 729 SLTVLRTALVD-NSVSGAKTYDKFQFERNGFFSVDPDSSPDK--LVFNRTVTLKEDPGKN 559
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00388640__41.m00266SPFH_domain_/_Band_7_family_protein
(275 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07529 194 3e-50
20881 169 1e-42
32906 27 8.7
>07529
Length = 1399
Score = 194 bits (493), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 153/224 (68%)
Frame = +2
Query: 43 GLSDKQYNEGWHLRVPYFERPIIFNTQTRYKTFPANTANADMQSVNITVRVLFEPIQDKL 102
G+ + Y EG H RVP+F+ PII++ ++R + + T + D+Q VNI++RVL PI +L
Sbjct: 5 GVQEDVYVEGLHFRVPWFQYPIIYDIRSRPRKITSPTGSKDLQMVNISLRVLSRPIASQL 184
Query: 103 SELYRYVGQDYDNKILPSIMNEVMRAVVAQYSASQLMSQRDKISQKIQKILEERARVFHI 162
+YR +G DYD ++LPSI NEV+++VVA+++ASQL++QR ++S I++ L ERA+ F+I
Sbjct: 185 PHVYRSLGTDYDERVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELTERAKDFNI 364
Query: 163 NIKNIAITELSFSKEYQEATEAKKIAQQEAERARYYVEMAXXXXXXXXXXAQAQTKSIEL 222
+ +++ITELSF +EY A E+K++AQQEA+RA++ VE A A + ++ +L
Sbjct: 365 ILDDVSITELSFGREYTAAVESKQVAQQEAQRAQFLVEKAKQEKQQKMVQADGEAQAAKL 544
Query: 223 VGQAAANDASYIDLKRIEYAKEIASVLADSRNHIMLNSDILQMD 266
+GQA + ++ L++I A+ I+ +A S+N + LN+ L ++
Sbjct: 545 IGQAVQANPGFLKLRKIRAAQNISRTVAQSQNRVYLNASALLLN 676
>20881
Length = 2017
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 137/203 (67%), Gaps = 1/203 (0%)
Frame = +1
Query: 57 VPYFERPIIFNTQTRYKTFPANTANADMQSVNITVRVLFEPIQDKLSELYRYVGQDYDNK 116
+P+ ++PIIF+ ++R + P T + D+Q+VNIT+R+LF P L +++ +G DYD +
Sbjct: 208 IPWVQKPIIFDCRSRPRNVPVVTGSKDLQNVNITLRILFRPQVPSLPKIFTNLGTDYDER 387
Query: 117 ILPSIMNEVMRAVVAQYSASQLMSQRDKISQKIQKILEERARVFHINIKNIAITELSFSK 176
+LPSI NEV++A+VAQ+ AS+L++QR+ +SQK+ + L +RA F + + +I++T L+F +
Sbjct: 388 VLPSITNEVLKAIVAQFDASELITQRELVSQKVSEELTDRALQFGLLLDDISLTHLTFGR 567
Query: 177 EYQEATEAKKIAQQEAERARYYVEMAXXXXXXXXXXAQAQTKSIELVGQAAANDA-SYID 235
E+ EA E+K++AQQEAERAR+ VE A A+ + + E + +A ++
Sbjct: 568 EFTEAVESKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSLAAEQLAKAFGEAGEGLVE 747
Query: 236 LKRIEYAKEIASVLADSRNHIML 258
L+++E A++IA L+ SRN + L
Sbjct: 748 LRKLEAAEDIAYQLSRSRNVVYL 816
>32906
Length = 825
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = +3
Query: 113 YDNKILPSIMNEVMRAVVAQYSASQLMSQRDKISQKIQKILEE----------RARVFHI 162
Y NKIL S++ E ++ V+ ++ L+SQR+ I +Q L E A V HI
Sbjct: 585 YSNKILHSLVQEALQPYVSPHTVG-LVSQREDILDLLQ--LHEDIDLVIPRGSSALVHHI 755
Query: 163 NIKNIAITELSFSK 176
++ I L S+
Sbjct: 756 KSHSLHIPVLGHSE 797
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00106960__7.m00566Proteasome_A-type_and_B-
type_family_protein
(245 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04255 156 2e-49
00789 129 9e-31
14551 125 1e-29
17033 119 1e-27
02448 117 6e-27
24591 116 1e-26
20771 105 1e-23
11023 61 4e-10
19133 59 2e-09
28971 47 4e-08
09425 35 0.033
15794 28 5.0
>04255
Length = 1758
Score = 156 bits (395), Expect(2) = 2e-49, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 125/189 (66%)
Frame = -2
Query: 49 KKTQESYVDMNSFTNIHTVSERVGAATTGYYPDSKAIVTRLRQEASEYKLKNGHFMPVDQ 108
+K + +D + T++++++ER+G TG DS++ V R R EA+++K G+ +PVD
Sbjct: 1472 EKVPDKLLDPTTVTHLYSLTERIGCVMTGMIADSQSQVQRARYEAAKWKYTYGYDIPVDM 1293
Query: 109 LSCRLGDLSQVYTQKAFMRPYAVETILAGYDNELGPLLYKNDPSGYFCGYRAVASGIKEQ 168
L R+ +++QVYTQ A MRP IL GYD+E GP +YK DP+GY+CG++A ++G K+
Sbjct: 1292 LCKRIANINQVYTQSAEMRPLGCCMILIGYDDEKGPEVYKTDPAGYYCGFKATSAGSKQL 1113
Query: 169 DAIHQLEKEFKKDKNATSMSFDKTIEVAINTLKNILNREFNPTDIEIGVVSKEQPKFKKL 228
+A LEK+ KK ++ T +++ E+AI L +L+ +F +++E+G+V+K+ P F+ L
Sbjct: 1112 EANGFLEKKIKKKQDFT---YNEAAEIAITCLSTVLSADFKASEVEVGIVTKDNPNFRIL 942
Query: 229 NEQEIEEAL 237
E +I+ L
Sbjct: 941 TEADIDVHL 915
Score = 57.0 bits (136), Expect(2) = 2e-49, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = -3
Query: 11 FSPEGRLFQVEYAQRAVKNSGITTIGVRGKDCVVLITEKKTQESY 55
SPEGRL+QVEYA +A+ G+T++ VRGKD V++T+KK + ++
Sbjct: 1585 LSPEGRLYQVEYAFKAINQGGLTSVAVRGKDSAVIVTQKKFRTNF 1451
>00789
Length = 1584
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 125/222 (56%), Gaps = 2/222 (0%)
Frame = +1
Query: 5 ETQITVFSPEGRLFQVEYAQRAVKNSGITTIGVRGKDCVVLITEKKTQESYVDMNSFT-N 63
+++ T+FSPEGRL+QVEYA A+ ++G T +G+ KD +VL E++ +D S++
Sbjct: 37 DSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILAKDGIVLAAERRNTNKLLDEVSYSEK 213
Query: 64 IHTVSERVGAATTGYYPDSKAIVTRLRQEASEYKLKNGHFMPVDQLSCRLGDLSQVYTQK 123
I+ +S+ + + G D+ + LR A Y L+ +P +Q+ L D+ Q YTQ
Sbjct: 214 IYRLSDDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQVVATLCDIKQAYTQF 393
Query: 124 AFMRPYAVETILAGYDNELGPLLYKNDPSGYFCGYRAVASGIKEQDAIHQLEKEFKKDKN 183
RP+ V + G+D G LY++DPSG + G++A G +A+ L++E+K+D++
Sbjct: 394 GGKRPFGVSILYMGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSANAVSLLKQEYKEDES 573
Query: 184 ATSMSFDKTIEVAINTLKNILN-REFNPTDIEIGVVSKEQPK 224
S D+ + ++I L L+ + P +E+ ++++ K
Sbjct: 574 ----SLDEALALSIKVLGKTLDLTKLTPDKVEMATLTRKDGK 687
>14551
Length = 1344
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 1/231 (0%)
Frame = +3
Query: 8 ITVFSPEGRLFQVEYAQRAVKNSGITTIGVRGKDCVVLITEKKTQESYVDMNSFTNIHTV 67
+T FSP G+L Q+EYA AV +G ++G++ + VVL TEKK + D +S + T+
Sbjct: 165 LTTFSPSGKLVQIEYALAAV-GAGAPSVGIKATNGVVLATEKKQKSVXYDEHSINKVETI 341
Query: 68 SERVGAATTGYYPDSKAIVTRLRQEASEYKLKNGHFMPVDQLSCRLGDLSQVYTQKAFMR 127
++ +G +G PD + + R R+ A +YK +P QL R+ + Q +TQ +R
Sbjct: 342 TKNIGIVYSGMGPDYRVLCRRARKLAEQYKRVYNEQIPTAQLVQRVAAVMQEFTQSGGVR 521
Query: 128 PYAVETILAGYD-NELGPLLYKNDPSGYFCGYRAVASGIKEQDAIHQLEKEFKKDKNATS 186
P+ V ++AG+D ++ P LY+ DPSG + ++A A G + LEK + + +
Sbjct: 522 PFGVSLLMAGWDEDDKKPFLYQCDPSGAYFAWKATAMGKNHINGKTFLEKRYSE-----T 686
Query: 187 MSFDKTIEVAINTLKNILNREFNPTDIEIGVVSKEQPKFKKLNEQEIEEAL 237
+ + + AI LK + +IEIG+ + F++L EI++ L
Sbjct: 687 LELEDAVHTAILALKESFEGQMTEDNIEIGICNSS--GFRRLEPSEIKDYL 833
>17033
Length = 2217
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%)
Frame = -3
Query: 2 SGSETQITVFSPEGRLFQVEYAQRAVKNSGITTIGVRGKDCVVLITEKKTQESYVDMNSF 61
+G + + FSP+GR+FQVEYAQ+AV+NSG T IG+RGKD VV+ EK + +
Sbjct: 2155 TGYDLSASHFSPDGRVFQVEYAQKAVENSG-TAIGIRGKDGVVMGVEKLVTSKLYEQGAN 1979
Query: 62 TNIHTVSERVGAATTGYYPDSKAIVTRLRQEASEYKLKNGHFMPVDQLSCRLGDLSQVYT 121
+ + +G A G D++ ++ R ++E+S Y+ G +P+ L+ R+ YT
Sbjct: 1978 KRLFNIDRHIGGAVAGLLADARQLMERAKEESSNYRFNYGSPVPLKYLTDRVAGYVHAYT 1799
Query: 122 QKAFMRPYAVETILAGYDNELGPLLYKNDPSGYFCGYRAVASGIKEQDAIHQLEKEFKKD 181
+ +RP+ I+A YD +GP ++ +PSG GY A G +Q A ++EK KD
Sbjct: 1798 LHSAVRPFGTSMIVASYD-AVGPQMFLVEPSGVSWGYYGCAIGKAKQTAKTEIEKLKMKD 1622
>02448
Length = 1302
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 120/228 (52%)
Frame = +2
Query: 8 ITVFSPEGRLFQVEYAQRAVKNSGITTIGVRGKDCVVLITEKKTQESYVDMNSFTNIHTV 67
ITVFSP+G LFQVEYAQ AVK G T +GVRG + VVL EKK + + I +
Sbjct: 275 ITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGNNLVVLGVEKKAVAKLQEERTVRKIALL 451
Query: 68 SERVGAATTGYYPDSKAIVTRLRQEASEYKLKNGHFMPVDQLSCRLGDLSQVYTQKAFMR 127
E V A G D++ ++ R R E +KL + V+ ++ + L Q YTQ R
Sbjct: 452 DEHVALAFAGLTADARILINRARIECQSHKLTVEDPVTVEYITRHIAQLKQKYTQSNGRR 631
Query: 128 PYAVETILAGYDNELGPLLYKNDPSGYFCGYRAVASGIKEQDAIHQLEKEFKKDKNATSM 187
P+ + +++ G+D + P LY+ DPSG + ++A G + LEK + + A+
Sbjct: 632 PFGLSSLIIGFDYDGSPHLYQTDPSGTYHEWKANTIGRNAKTVREFLEKHYTDEVAASD- 808
Query: 188 SFDKTIEVAINTLKNILNREFNPTDIEIGVVSKEQPKFKKLNEQEIEE 235
+TI++A+ L ++ + ++E+ V+ + Q + L EIE+
Sbjct: 809 --KETIKLALKALLEVV--QSGAKNMEVAVMRRGQA-LQMLESDEIEK 937
>24591
Length = 1801
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 120/228 (52%)
Frame = +1
Query: 8 ITVFSPEGRLFQVEYAQRAVKNSGITTIGVRGKDCVVLITEKKTQESYVDMNSFTNIHTV 67
ITVFSP+G LFQVEYAQ AVK G T +GVRG + VVL EKK + + I +
Sbjct: 52 ITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGDNLVVLGVEKKAVAKLQEERTVRKIALL 228
Query: 68 SERVGAATTGYYPDSKAIVTRLRQEASEYKLKNGHFMPVDQLSCRLGDLSQVYTQKAFMR 127
E V A G D++ ++ R R E +KL + V+ ++ + L Q YTQ R
Sbjct: 229 DEHVALAFAGLTADARILINRARIECQSHKLTVEDPVTVEYITRHIAQLKQKYTQSNGRR 408
Query: 128 PYAVETILAGYDNELGPLLYKNDPSGYFCGYRAVASGIKEQDAIHQLEKEFKKDKNATSM 187
P+ + +++ G+D + P LY+ DPSG + ++A G + LEK + + A+
Sbjct: 409 PFGLSSLIIGFDYDGTPHLYQTDPSGTYHEWKANTIGRNAKTVREFLEKHYTDEVAASD- 585
Query: 188 SFDKTIEVAINTLKNILNREFNPTDIEIGVVSKEQPKFKKLNEQEIEE 235
+TI++A+ L ++ + ++E+ V+ + Q + L EIE+
Sbjct: 586 --KETIKLALKALLEVV--QSGAKNMEVAVMRRGQA-LQMLESDEIEK 714
>20771
Length = 674
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Frame = +2
Query: 8 ITVFSPEGRLFQVEYAQRAVKNSGITTIGVRGKDCVVLITEKKTQESYVDMNSFTNIHTV 67
+ FSPEGRLFQVEYA A+K G T IG++ + VVL EK+ S ++ S I V
Sbjct: 113 VNTFSPEGRLFQVEYAIEAIK-LGSTAIGIQTNEGVVLAVEKRVTSSLIEPTSIEKIMEV 289
Query: 68 SERVGAATTGYYPDSKAIVTRLRQEASEYKLKNGHFMPVDQLSCRLGDLSQVYTQK---- 123
+ +G A +G DS+ ++ R R EA + M V+ ++ + +L+ +
Sbjct: 290 DKHIGCAMSGLIADSRTLIDRARVEAQNHWFTYNENMSVESVTQAVSNLALAFGDDDPDP 469
Query: 124 -AFMRPYAVETILAGYDNELGPLLYKNDPSGYFCGYRAVASGIKEQDAIHQLEKEFKK 180
A RP+ V ++AG D+ GP L+ DPSG F Y A A G + A L++++ K
Sbjct: 470 GAMSRPFGVALLIAGVDSN-GPRLFHMDPSGTFIQYDAKAIGSGSEGAQQALQEQYHK 640
>11023
Length = 1057
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%)
Frame = -2
Query: 134 ILAGYDNELGPLLYKNDPSGYFCGYRAVASGIKEQDAIHQLEKEFKKDKNATSMSFDKTI 193
IL GYD+E GP +YK DP+GY+CG++A ++G K+ +A LEK ++ K + +M +
Sbjct: 993 ILIGYDDEKGPEVYKTDPAGYYCGFKATSAGSKQLEANGFLEKRSRRSKTSPTMRQQR-- 820
Query: 194 EVAINTLKNILNREFNPTDIEIGVVSKEQPKFKKLNE 230
+L + R PT + P+ +++E
Sbjct: 819 -----SLSPVCPRSCRPTSRRQKWKWESSPRTTQISE 724
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%)
Frame = -1
Query: 176 KEFKKDKNATSMSFDKTIEVAINTLKNILNREFNPTDIEIGVVSKEQPKFKKLNEQEIEE 235
KE KK ++ T +++ E+AI L +L+ +F +++E+G+V+K+ P F+ L E +I+
Sbjct: 868 KEIKKKQDFT---YNEAAEIAITCLSTVLSADFKASEVEVGIVTKDNPNFRILTEADIDV 698
Query: 236 AL 237
L
Sbjct: 697 HL 692
>19133
Length = 692
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Frame = +1
Query: 81 DSKAIVTRLRQEASEYKLKNGHFMPVDQLSCRLGDLSQVYTQKAFMRPYAVETILAGYDN 140
D++ + ++ E + + +PV +L +G+ Q+ T + RP+ V ++AGYD
Sbjct: 10 DARLLCNFMQTECLDSRWAYQQPLPVSRLVSAIGNKLQIPTHRYGRRPFGVGLLIAGYDW 189
Query: 141 ELGPLLYKNDPSGYFCGYRAVASGIKEQDAIHQLEKEFKKDKNATSMSFDKTIEVAINTL 200
GP +Y+ PS + +A+A G + Q A LE+ + S D+ ++ + L
Sbjct: 190 S-GPHIYQTCPSANYYDCKAMAIGARSQSARTYLERHLDQFPQC---SLDELVKHGLRAL 357
Query: 201 KNILNRE--FNPTDIEIGVVSKEQPKFKKLNEQEIEEAL 237
++ L E + + +G+V K+ KFK +++ + L
Sbjct: 358 RDTLPSEVTLSTKNCSLGIVDKDM-KFKIYDDENVASYL 471
>28971
Length = 437
Score = 47.4 bits (111), Expect(2) = 4e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +1
Query: 118 QVYTQKAFMRPYAVETILAGYDNELGPLLYKNDPSGYFCGYRAVASG 164
Q YTQ +RP+ V ++ G+DNE P LY++DPSG + ++A A G
Sbjct: 4 QEYTQSGGVRPFGVSLLICGWDNER-PYLYQSDPSGAYFAWKATAMG 141
Score = 26.9 bits (58), Expect(2) = 4e-08, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +2
Query: 174 LEKEFKKDKNATSMSFDKTIEVAINTLKNILNREFNPTDIEIGVVSKEQPKFKKLNEQEI 233
+ K F + + + + + + AI TLK + +IE+G+ +Q FK+L+ I
Sbjct: 155 MAKTFLEKRYSEDLELEDAVHTAILTLKEGFEGKMTSDNIEVGIC--DQNGFKRLDPATI 328
Query: 234 EEAL 237
++ L
Sbjct: 329 KDYL 340
>09425
Length = 1898
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Frame = -3
Query: 30 SGITTIGVRGKDCVVLITEKK--TQESYVDMNSFTNIHTVSERVGAATTGYYPDSKAIVT 87
+G I ++GKDCV + +++ Q V M+ F + + + G D + +
Sbjct: 1818 NGAAIIAMKGKDCVAIAADRRFGVQAQTVSMD-FDKVFEMGPHLFIGLPGLATDVQTVSQ 1642
Query: 88 RLRQEASEYKLK-NGHFMPVDQLSCRLGDLSQVYTQKAFMRPYAVETILAGYD 139
RL+ + Y+L+ N P +S +S + ++ F PY VE ++AG +
Sbjct: 1641 RLKFRLNLYELRENRRIKPQTFMSM----VSNLLYERRF-GPYFVEPVIAGLE 1498
>15794
Length = 929
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 96 YKLKNGHFMPVDQLSCRLGDLSQVYTQKAFMRPYAVETILAGY 138
YK ++ F + Q S ++GDL+ +++ RP++ E + A +
Sbjct: 1 YKQRSCMFRLISQKSIKIGDLNSFEIKQSXHRPHSTEHMSACH 129
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00268070__3690.m000872-oxoglutarate_dehydrogenase,
_E1_component_family_protein
(1054 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
15717 193 4e-49
33389 47 2e-06
01657 31 3.4
>15717
Length = 470
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/158 (58%), Positives = 116/158 (73%)
Frame = -2
Query: 693 EGYGVRISGQDVERGTFSHRHSKINDQKVDREKYCPLSQLLSPQDIAKRRLTIANSHLSE 752
EG VR+SGQDVE GTFSHRH ++ Q++D++ + PL+ + Q ++ NS LSE
Sbjct: 469 EGIHVRLSGQDVEXGTFSHRHHVLHHQEIDKKMFVPLNHMFEDQ----AEYSVCNSSLSE 302
Query: 753 FGVLGFEYGYSLANPNNLVIWEAQFGDFANGAQIMIDNFIVSGESKWKQQSGLVLNLPHG 812
+GVLGFE GYS+ NPN LVIWEAQFGDFAN AQ +ID FI SG++KW +QSGLVL LPHG
Sbjct: 301 YGVLGFELGYSMTNPNALVIWEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHG 122
Query: 813 MDGQGPEHSSARLERFLQLSDDDPTNFILKRQNRLKQQ 850
+G GPEHSS R+ERFLQ S+DDP F ++ N QQ
Sbjct: 121 YEGMGPEHSSCRIERFLQQSNDDPDYFPVEDMNLEIQQ 8
>33389
Length = 894
Score = 46.6 bits (109), Expect(2) = 2e-06, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +1
Query: 974 LEEYKNAKIIWCQEEHENQGGWNFVRPRIRAVLDRLQEEGERKNGKVIYVGRKXXXXXXX 1033
L +Y AK+ W QEEH+N G + +V PR+R V ++ + E + Y GR
Sbjct: 58 LMKYPKAKVCWVQEEHKNMGPYQYVEPRMRTVFKKMNDVRELE-----YAGRFPSAAAAT 222
Query: 1034 XXXXKHKQELNLFL 1047
H EL+ F+
Sbjct: 223 GNKQMHVIELSTFM 264
Score = 24.3 bits (51), Expect(2) = 2e-06, Method: Composition-based stats.
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 956 IIRLEQLSPFPY 967
I R+EQL+PFP+
Sbjct: 2 ISRIEQLTPFPF 37
>01657
Length = 1088
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 858 VCMTTTAANYFHALRRQIRRPFRKPLVLFNSKRLL 892
V TT+A Y L R IRRP+R +++ S LL
Sbjct: 871 VTRTTSAVRYCICLXRPIRRPYRSKSLVYCSSALL 767
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01048110__3758.m00208Glutamate/Leucine/Phenylalanine/Valine_
dehydrogenase_family_protein
(488 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08233 191 5e-49
21172 78 7e-15
26330 45 5e-05
>08233
Length = 2477
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 158/268 (58%), Gaps = 11/268 (4%)
Frame = -3
Query: 223 LGLEQGIAGKTFIIHSFGKIGYWTAFYLQELGAKLIGVIEKDGSIYNPEGIDVNLVKLHF 282
+GL G KTFI+ FG +G + YL GAK IG++EKDGSIYN +GI ++ +
Sbjct: 2424 VGLTPGFGEKTFIVQGFGNVGLHSMRYLHRAGAKCIGIMEKDGSIYNADGIHPRELEDYK 2245
Query: 283 DKNHSFKGYPGAEFYPDETAMYKQCDLLIPTYVNHLINKDNADKLNCKYLAENTNAVVSY 342
+N + G+PGA+ Y + ++++CD+L+P KDNAD++ K +AE N +
Sbjct: 2244 IENGTIVGFPGAKPY-EGNMLFEKCDILVPAAGEKQFTKDNADQVQAKIIAEGANGPTTV 2068
Query: 343 EADQILNSKGIVVFPDVLISSGPIVVSYMEWLKNLEHIRKGRLTRKWEEQSNYSLMEFIS 402
AD+I K I+V PD+ I++G + VSY EWLKNL H+ GRLT K+E+ SNY L++ +
Sbjct: 2067 GADEIFLKKNILVIPDLFINAGGVTVSYFEWLKNLNHVSYGRLTFKYEKDSNYHLLQSVQ 1888
Query: 403 QA----------TGLKMEVSEENKEKLQGAQERDIVNSGLEAIIEESVDELLPI-LEKNP 451
+ + + + S E +E++ GA E+DIV+SGLE +E S ++ + N
Sbjct: 1887 SSLERKFGRINGSSIPIVPSHEFEERIAGASEKDIVHSGLEYTMERSARNIMKTAMHYNL 1708
Query: 452 SISLRDACYVDALTKLHSHYKTAGIALS 479
+ LR A Y+ A+ K+ Y+ AG+ +
Sbjct: 1707 GLDLRTAAYIAAIEKIFVVYREAGLTFT 1624
>21172
Length = 476
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
Frame = +1
Query: 211 NYLFNHKKLAQRLGLEQGIAGKTFIIHSFGKIGYWTAFYLQELGAKLIGVIEKDGSIYNP 270
+ K+ +G + G K +I FG +G ++A ++QE GAK+IG+ E D S+ N
Sbjct: 22 DIFLQDKEWMDLIGFKTGWKDKKVVIQGFGNVGSFSAKFVQEAGAKIIGIQEFDCSLTNN 201
Query: 271 EGIDV-NLVKLHFDKNHSFKGYPGAEFYPDETAMYKQCDLLIPTYVNHLINKDNADKLNC 329
+GID+ +L+K +K + KGY A+ E + +CD+L+P +I +NA +
Sbjct: 202 DGIDIKDLMKYKLEK-KTIKGYSKAK-ETKENLLTAECDILMPCATQKVITSENAKDIKA 375
Query: 330 KYLAENTNAVVSYEADQILNSKGIVVFPDV 359
K + E N + ++IL + + PD+
Sbjct: 376 KLILEGANGPTTPAGEKILLGERGLSVPDI 465
>26330
Length = 478
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 412 SEENKEKLQGAQERDIVNSGLEAIIEESVDELLPI-LEKNPSISLRDACYVDALTKLHSH 470
SE ++++ GA E+DIV+SGL+ +E S ++ L+ + + LR A Y +++ K+ +
Sbjct: 68 SEAFQKRISGASEKDIVHSGLDYTMERSARAIMKTALKFDLGLDLRTAAYANSIEKIFTT 247
Query: 471 YKTAGIAL 478
Y AG+A
Sbjct: 248 YADAGLAF 271
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|118385690|ref|XP_001025972.1|_Tubulin/FtsZ_family_[Tetrahymena_ther
mophila_SB210]
(459 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
16482 190 9e-49
04882 122 4e-28
13181 119 3e-27
12457 114 7e-26
00276 114 9e-26
06360 91 9e-19
05902 90 1e-18
39157 86 3e-17
25015 86 4e-17
03702 69 4e-12
31457 65 6e-11
28905 38 0.010
04023 28 6.1
>16482
Length = 837
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 2/246 (0%)
Frame = +1
Query: 1 MREIINLQIGQGGNKIGQCFWESLCTEHQLDQDGYSDKMSDFQREQIGVYFDEQNDKRYK 60
MREI+++Q GQ GN+IG FWE + EH +D G SD Q E+I VY++E +Y
Sbjct: 100 MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 279
Query: 61 ARSLLIDGDPNSIFQIQQSSFGNLFNSNCFIQDQWSAANCFGKGR--QFYELIDLVMDQI 118
R++L+D +P ++ ++ FG +F + F+ Q A N + KG + EL+D V+D +
Sbjct: 280 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 459
Query: 119 RILVEKSDQMQGFQVMRXXXXXXXXXXXXXXXXKLREEYPNQIITNFCIFPSSQISDCVV 178
R E D +QGFQ+ K+REEYP++I+ F + PS ++SD VV
Sbjct: 460 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 639
Query: 179 EPYNCVLSLPGLLQNQDLCFCYDNKSLYNILKNFIGKNTKEYKDLNQIIKICMSGTTAQW 238
EPYN LS+ L++N D +C DN++LY+I + T Y DLN ++ MSG T
Sbjct: 640 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 819
Query: 239 RFPSQV 244
RFP Q+
Sbjct: 820 RFPGQL 837
>04882
Length = 1136
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 5/217 (2%)
Frame = +2
Query: 216 NTKEYKDLNQIIKICMSGTTAQWRFPSQVYNTMRKLATNMVPFPQLLFLNTGVAPILHHE 275
+T Y DLN ++ MSG T RFP Q+ +RKLA NMVPFP+L F G AP+
Sbjct: 317 HTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 496
Query: 276 FVTNRSLSTKEMISMLQNNRNSVNH-NINQDKLIDFASLYIFRGXXXXXXXXXXXXXXXX 334
R+L+ E+ + +++N + + + + A+ IFRG
Sbjct: 497 SQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAA--IFRGRMSMKEVDEQMLNVQN 670
Query: 335 XKTQY---YIPDNQKVYQCNQTFNNEFRNSALKLENGTSVTEILQEQLQNFSALFKRKAF 391
+ Y +IP+N K C+ + SA + N T++ E+ + + F+A+F+RKAF
Sbjct: 671 KNSSYFVEWIPNNVKTAVCDIP-PRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAF 847
Query: 392 LHYGFGD-TDEMEFTEAQSYLNDILDLYNQHQESVYD 427
LH+ G+ DEMEFTEA+S +ND++ Y Q+Q++ D
Sbjct: 848 LHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 958
>13181
Length = 1092
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Frame = -3
Query: 206 YNILKNFIGKNTKEYKDLNQIIKICMSGTTAQWRFPSQVYNTMRKLATNMVPFPQLLFLN 265
Y+I + T Y DLN ++ MSG T RFP Q+ +RKLA NMVPFP+L F
Sbjct: 1090 YDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFM 911
Query: 266 TGVAPILHHEFVTNRSLSTKEMISMLQNNRNSVNH-NINQDKLIDFASLYIFRGXXXXXX 324
G AP+ R+L+ E+ + + +N + + + + A++ FRG
Sbjct: 910 PGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAM--FRGRMSMKE 737
Query: 325 XXXXXXXXXXXKTQY---YIPDNQKVYQCNQTFNNEFRNSALKLENGTSVTEILQEQLQN 381
+ Y +IP+N K C+ + SA + N T++ E+ + +
Sbjct: 736 VDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP-PRGLKMSATFVGNSTAIQELFKRISEQ 560
Query: 382 FSALFKRKAFLHYGFGD-TDEMEFTEAQSYLNDILDLYNQHQESV 425
F+A+F+RKAFLH+ G+ DEMEFTEA+S +ND++ Y Q+Q++
Sbjct: 559 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 425
>12457
Length = 781
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 2/225 (0%)
Frame = -1
Query: 65 LIDGDPNSIFQIQQSSFGNLFNSNCFIQDQWSAANCFGKGRQFY--ELIDLVMDQIRILV 122
L+D +P + +++ ++ LF+ + + AAN + +G E++DLV+D+IR L
Sbjct: 718 LVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTIGKEIVDLVLDRIRKLA 539
Query: 123 EKSDQMQGFQVMRXXXXXXXXXXXXXXXXKLREEYPNQIITNFCIFPSSQISDCVVEPYN 182
++ +QGF + +L +Y + F I+P+ Q+S VVEPYN
Sbjct: 538 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYN 359
Query: 183 CVLSLPGLLQNQDLCFCYDNKSLYNILKNFIGKNTKEYKDLNQIIKICMSGTTAQWRFPS 242
+L+ L++ D F DN+++Y+I + + Y +LN++I +S TA RF
Sbjct: 358 SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 179
Query: 243 QVYNTMRKLATNMVPFPQLLFLNTGVAPILHHEFVTNRSLSTKEM 287
+ + + TN+VP+P++ F AP++ E + L+ E+
Sbjct: 178 ALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEI 44
>00276
Length = 1330
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 14/353 (3%)
Frame = -3
Query: 90 FIQDQWSAANCFGKGRQFY--ELIDLVMDQIRILVEKSDQMQGFQVMRXXXXXXXXXXXX 147
+ + AAN + +G EL+DLV+D+IR L ++ +QGF +
Sbjct: 1295 LVTGKEDAANNYARGHYTIGKELVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTS 1116
Query: 148 XXXXKLREEYPNQIITNFCIFPSSQISDCVVEPYNCVLSLPGLLQNQDLCFCYDNKSLYN 207
+L +Y + F I+P+ Q+S VVEPYN +L+ L++ D F DN+++Y+
Sbjct: 1115 LXMERLSVDYGKKSKLEFXIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 936
Query: 208 ILKNFIGKNTKEYKDLNQIIKICMSGTTAQWRFPSQVYNTMRKLATNMVPFPQLLFLNTG 267
I + + Y +LN++I +S TA RF + + + TN+VP+P++ F
Sbjct: 935 ICRRNLDIERPTYTNLNRLIXQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT 756
Query: 268 VAPILHHEFVTNRSLSTKEMISMLQNNRNS-VNHNINQDKLIDFASLYIFRGXXXXXXXX 326
AP++ E + L E+ + N V + K + A ++RG
Sbjct: 755 YAPVISAEKAYHEQLXVAEITNACFEPANQLVKCDPRHGKYM--ACCMLYRGDVVPKDVN 582
Query: 327 XXXXXXXXXKTQYYI---PDNQKV---YQCNQTFNN----EFRNSALKLENGTSVTEILQ 376
+T ++ P KV YQ + + + L N T++ E
Sbjct: 581 AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 402
Query: 377 EQLQNFSALFKRKAFLHYGFGD-TDEMEFTEAQSYLNDILDLYNQHQESVYDN 428
F ++ ++AF+H+ G+ +E EF+EA+ D+ L ++E D+
Sbjct: 401 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGVDS 252
>06360
Length = 1896
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 4/179 (2%)
Frame = -1
Query: 1 MREIINLQIGQGGNKIGQCFWESLCTEHQLDQDG--YSDKMSDFQREQIGVYFDEQNDKR 58
MRE I++ +GQ G ++G WE C EH + DG SDK + +F E +
Sbjct: 1710 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 1531
Query: 59 YKARSLLIDGDPNSIFQIQQSSFGNLFNSNCFIQDQWSAANCFGKGRQFY--ELIDLVMD 116
+ R++ +D +P + +++ ++ LF+ + + AAN + +G E++DLV+D
Sbjct: 1530 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTIGKEIVDLVLD 1351
Query: 117 QIRILVEKSDQMQGFQVMRXXXXXXXXXXXXXXXXKLREEYPNQIITNFCIFPSSQISD 175
+IR L ++ +QGF + +L +Y + F I+P+ Q+SD
Sbjct: 1350 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSD 1174
>05902
Length = 1127
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 9/250 (3%)
Frame = +2
Query: 152 KLREEYPNQIITNFCIFPS-SQISDCVVEPYNCVLSLPGLLQNQDLCFCYDNKSLYNILK 210
KL + +P ++I + +FP+ +ISD VV+PYN +L+L L QN D DN +L I
Sbjct: 74 KLNDRFPKKLIQTYSVFPNVDEISDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIAA 253
Query: 211 NFIGKNTKEYKDLNQIIKICMSGTTAQWRFPSQVYNTMRKLATNMVPFPQLLFLNTGVAP 270
+ + +T + +NQ++ MS +T R+P + N + L +++P P+L FL TG P
Sbjct: 254 DRLHIDTPTFAQVNQLVSTVMSTSTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTP 433
Query: 271 ILHHEFVTNRSLST--KEMISMLQNNRNSVNHNINQDKLIDFAS-LYIFRGXXXXXXXXX 327
+ V N +T M +LQ V+ +++ + S L I +G
Sbjct: 434 LTTDSQVANVRKTTVLDVMRRLLQPKNMMVSTPVHRQANHCYISILNIIQGEVDPTQVHK 613
Query: 328 XXXXXXXXKTQYYIPDNQKVYQCNQTFNNEF-----RNSALKLENGTSVTEILQEQLQNF 382
K +IP Q + + + R S L L N TS++ + + L+ +
Sbjct: 614 SLQRIRERKLAQFIPWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSISHLFERILRQY 793
Query: 383 SALFKRKAFL 392
L KR+AF+
Sbjct: 794 DKLRKREAFM 823
>39157
Length = 488
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 5/124 (4%)
Frame = -1
Query: 1 MREIINLQIGQGGNKIGQCFWESLCTEHQLDQDGYSDKMSDFQREQIGVYFDEQNDKRYK 60
MREI++LQ GQ GN+IG FWE + EH +D G SD Q E+I VY++E +Y
Sbjct: 443 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 264
Query: 61 ARSLLIDGDPNSIFQIQQSS-FG-NLFNSNCFIQDQWSAANCFGK---GRQFYELIDLVM 115
R++L+D +P ++ ++ S FG +F + F+ Q A N +G+ ++ EL+D V+
Sbjct: 263 PRAVLVDLEPGTMDSVRSGSPFGPKIFRPDNFVFGQSGAGNNWGQKDTTQRGAELVDSVL 84
Query: 116 DQIR 119
D +R
Sbjct: 83 DVVR 72
>25015
Length = 458
Score = 85.5 bits (210), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Frame = -3
Query: 18 QCFWESLCTEHQLDQDGYSDKMSDFQREQIGVYFDEQNDKRYKARSLLIDGDPNSIFQIQ 77
CFWE + EH +D G SD Q E+I VY++E +Y R++L+D +P ++ ++
Sbjct: 369 HCFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVR 190
Query: 78 QSSFGNLFNSNCFIQDQWSAANCFGKGR--QFYELIDLVMDQIRILVEKSDQMQGFQV 133
FG +F + F+ Q A N + KG + EL+D V+D +R E D +QGFQ+
Sbjct: 189 SGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQL 16
>03702
Length = 1932
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%)
Frame = +1
Query: 152 KLREEYPNQIITNFCIFPSSQISDCVVEPYNCVLSLPGLLQNQDLCFCYDNKSLYNILKN 211
+L +Y + F I+P+ Q+S VVEPYN +L+ L++ D F DN+++Y+I +
Sbjct: 1462 RLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 1641
Query: 212 FIGKNTKEYKDLNQIIKICMSGTTAQWRFPSQVYNTMRKLATNMVPFPQLLFLNTGVAPI 271
+ Y +LN++I +S TA RF + + + TN+VP P L + P+
Sbjct: 1642 NLDIERPXYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPTPHPLPPG-HLCPV 1818
Query: 272 LHHEFVTNRSLSTKEM 287
+ E + L+ E+
Sbjct: 1819 ISAEKAYHEQLTVAEV 1866
>31457
Length = 1530
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = +3
Query: 340 YIPDNQKVYQCNQTFNNEFRNSALKLENGTSVTEILQEQLQNFSALFKRKAFLHYGFGD- 398
+IP+N K C+ + S+ + N T++ E+ + + F+A+F+RKAFLH+ G+
Sbjct: 339 WIPNNVKTAVCDIPPRG-LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 515
Query: 399 TDEMEFTEAQSYLNDILDLYNQHQESV 425
DEMEFTEA+S +ND++ Y Q+Q++
Sbjct: 516 MDEMEFTEAESNMNDLVSEYQQYQDAT 596
>28905
Length = 425
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Frame = -1
Query: 251 LATNMVPFPQLLFLNTGVAPILHHEFVTNRSLSTKEMISMLQNNRNSVNH-NINQDKLID 309
+A NMVPFP+L F G AP+ R+L+ E+ + + +N + + + +
Sbjct: 389 VAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLT 210
Query: 310 FASLYIFRGXXXXXXXXXXXXXXXXXKTQYY---IPDNQKVYQCN 351
A++ FRG + Y+ IP+N K C+
Sbjct: 209 VAAM--FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCD 81
>04023
Length = 997
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 87 SNCFIQDQWSAANCFGKGRQF-YELIDLVMDQIRILV 122
S F+Q S CF GR EL DL D +R+++
Sbjct: 337 SGTFLQTDLSVERCFTHGRHXSXELADLARDLLRLVL 227
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00787250__3755.m00471Glutamate/Leucine/Phenylalanine/Valine_
dehydrogenase_family_protein
(500 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08233 190 9e-49
21172 114 1e-25
26330 45 6e-05
32991 29 3.4
06601 29 5.7
17331 28 5.9
>08233
Length = 2477
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 159/284 (55%), Gaps = 11/284 (3%)
Frame = -3
Query: 227 VYYTLKYMLENKEFLQKTGLTQGLKGKTFVIEGFGSVGYWAAHHLQEAGAILVGVCEHDG 286
VY+ ++ + ++ GLT G KTF+++GFG+VG + +L AGA +G+ E DG
Sbjct: 2475 VYHGVQNFIHEASYMSMVGLTPGFGEKTFIVQGFGNVGLHSMRYLHRAGAKCIGIMEKDG 2296
Query: 287 QIFNPQGIDASELNNYMKKNKGVKGFPKATEQE-NVAYSKCDFFIPCFFAQSIYAENADK 345
I+N GI EL +Y +N + GFP A E N+ + KCD +P + +NAD+
Sbjct: 2295 SIYNADGIHPRELEDYKIENGTIVGFPGAKPYEGNMLFEKCDILVPAAGEKQFTKDNADQ 2116
Query: 346 FQCKVVAEGANLPTTPAAXXXXXXXXXXXXPDIITSSGGFLASYFEWIKNINHTQHGAMT 405
Q K++AEGAN PTT A PD+ ++GG SYFEW+KN+NH +G +T
Sbjct: 2115 VQAKIIAEGANGPTTVGADEIFLKKNILVIPDLFINAGGVTVSYFEWLKNLNHVSYGRLT 1936
Query: 406 RKWEEKSNQQVLETIEGT--------TGLRLVSKAILDHVEEIKGASERDLVISGIEESF 457
K+E+ SN +L++++ + G + + E I GASE+D+V SG+E +
Sbjct: 1935 FKYEKDSNYHLLQSVQSSLERKFGRINGSSIPIVPSHEFEERIAGASEKDIVHSGLEYTM 1756
Query: 458 ENALIETIETSKKHN--VSLRCAAYINALNKLHGHYEQVGITFS 499
E + ++T+ +N + LR AAYI A+ K+ Y + G+TF+
Sbjct: 1755 ERSARNIMKTAMHYNLGLDLRTAAYIAAIEKIFVVYREAGLTFT 1624
>21172
Length = 476
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 88/154 (57%), Gaps = 1/154 (0%)
Frame = +1
Query: 226 GVYYTLKYMLENKEFLQKTGLTQGLKGKTFVIEGFGSVGYWAAHHLQEAGAILVGVCEHD 285
GV+ L++KE++ G G K K VI+GFG+VG ++A +QEAGA ++G+ E D
Sbjct: 4 GVWKAGDIFLQDKEWMDLIGFKTGWKDKKVVIQGFGNVGSFSAKFVQEAGAKIIGIQEFD 183
Query: 286 GQIFNPQGIDASELNNYMKKNKGVKGFPKATE-QENVAYSKCDFFIPCFFAQSIYAENAD 344
+ N GID +L Y + K +KG+ KA E +EN+ ++CD +PC + I +ENA
Sbjct: 184 CSLTNNDGIDIKDLMKYKLEKKTIKGYSKAKETKENLLTAECDILMPCATQKVITSENAK 363
Query: 345 KFQCKVVAEGANLPTTPAAXXXXXXXXXXXXPDI 378
+ K++ EGAN PTTPA PDI
Sbjct: 364 DIKAKLILEGANGPTTPAGEKILLGERGLSVPDI 465
>26330
Length = 478
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +2
Query: 411 KSNQQVLETIEGTTGLRLVSKAILDHVEEIKGASERDLVISGIEESFENALIETIETSKK 470
+S Q+ LE G G R+ + I GASE+D+V SG++ + E + ++T+ K
Sbjct: 2 ESVQESLERRFGRVGGRIPVTPSEAFQKRISGASEKDIVHSGLDYTMERSARAIMKTALK 181
Query: 471 HN--VSLRCAAYINALNKLHGHYEQVGITFSK 500
+ + LR AAY N++ K+ Y G+ F K
Sbjct: 182 FDLGLDLRTAAYANSIEKIFTTYADAGLAF*K 277
>32991
Length = 278
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 270 HLQEAGAILVGVCEHDGQIFNPQGIDASELNNYMKKNKGVKGFPKAT 316
H+Q+AG + GVC+ G P G+ ++ +N K + FP A+
Sbjct: 174 HVQQAGGAVKGVCQSGGHTAVPPGMTRTKGSNDFAAKKTFQ-FPSAS 37
>06601
Length = 737
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 27 SKCKTDESITHMVNYYLDEAAEHTDIPKDKMNFYKNCDGIVQINIPL 73
+K KT ES+ +YL+ A+H + K F+K C ++ + PL
Sbjct: 148 AKTKTCESLVVSTYFYLNRNAKHFQLGKSVFRFHKMC--LICVLCPL 282
>17331
Length = 643
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 208 GKGLNQGGLKGYVESPGYGVYYTLKYMLENKEFLQKTGL 246
G+G+ Q L G VE +G +YT + ++ F +TG+
Sbjct: 392 GEGIGQRRLGGVVERGQHGRWYTTAFYRHSRRFRGRTGV 276
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00727630__3739.m00015adenylate_kinases_family_protein
(247 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
16252 188 2e-48
01182 90 9e-19
06512 66 1e-11
16388 45 3e-05
08194 31 0.50
11530 30 1.3
10145 28 2.8
02947 27 6.9
>16252
Length = 789
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 128/182 (70%)
Frame = +2
Query: 59 GDLLRNEIRTGTQLGKQAKTIMEKGGLVPDEIVINMVKNSLMKPDCAKGAILDGFPRTIQ 118
GD+LR EI +G++LG + K +M++G LV D++V+NM+ ++L KP+C G +LDGFPRT+
Sbjct: 2 GDMLRAEISSGSKLGSELKKVMDEGKLVSDDLVVNMIDSNLDKPECKNGFLLDGFPRTVV 181
Query: 119 QAQKFDEILKNEGLSLFKAIYFKVEDDVILERLGGRLVHLPSGRSYHTKYNPPKIPGKDD 178
QAQK D +L L I F ++D++++ R+ GRL+H SGRSYH ++ PPK+P +DD
Sbjct: 182 QAQKLDSLLDKRKTHLDAVIEFAIDDNLLVRRITGRLIHQASGRSYHEEFAPPKVPMRDD 361
Query: 179 ITGEDLSQRPDDVPQTIKTRLENFHSQTKPMLDYYEKQGLLATINAQASITNVWRQIKDV 238
ITGE L +R DD + +K RLE++H QTKP++DYY +GL ++A ++V+ I +
Sbjct: 362 ITGELLMKRSDDNAEALKKRLESYHKQTKPLVDYYGLRGLHFKVDAAKQASDVFSTIDSI 541
Query: 239 FK 240
F+
Sbjct: 542 FQ 547
>01182
Length = 2762
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 2/214 (0%)
Frame = -3
Query: 30 LVFI-GAPGAGKGTHSYKLQNTFCLCQISTGDLLRNE-IRTGTQLGKQAKTIMEKGGLVP 87
+VF+ G PGAGKGT K++ TF +S GDLLR E + ++ + +T ++ G +VP
Sbjct: 2292 VVFVLGGPGAGKGTQCTKIEETFGYKHLSAGDLLRAERAKEESKFKDEIETHIKNGSIVP 2113
Query: 88 DEIVINMVKNSLMKPDCAKGAILDGFPRTIQQAQKFDEILKNEGLSLFKAIYFKVEDDVI 147
EI +++K + M+ ++DGFPR +++++ + + + K ++F +DV
Sbjct: 2112 VEITCSLLKQA-MEESRKDKFLIDGFPRNKNNLDGWNKVMDSVAV-VRKVLFFNCPEDVC 1939
Query: 148 LERLGGRLVHLPSGRSYHTKYNPPKIPGKDDITGEDLSQRPDDVPQTIKTRLENFHSQTK 207
++R R GK+ S R DD ++++ R++ + T
Sbjct: 1938 IDRCLDR--------------------GKN-------SGRADDNRESLEKRIKTYTESTM 1840
Query: 208 PMLDYYEKQGLLATINAQASITNVWRQIKDVFKS 241
P++++Y+KQ L+A INA + V+ + VF +
Sbjct: 1839 PIIEHYKKQSLVAEINANQTEEQVFNDVTKVFNT 1738
>06512
Length = 2288
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 4/225 (1%)
Frame = +1
Query: 21 CRHIKDSKRLVFIGAPGAGKGTHS-YKLQNTFCLCQISTGDLLRNEIR---TGTQLGKQA 76
++I D + G PG+GK T + LQ + GDLLR EI +G K
Sbjct: 307 TKYIPDVPIIFLTGGPGSGKSTQAELLLQKYPKWVTVPVGDLLRQEINDNGSGNARWKMV 486
Query: 77 KTIMEKGGLVPDEIVINMVKNSLMKPDCAKGAILDGFPRTIQQAQKFDEILKNEGLSLFK 136
+M G +VP+++V ++ + L A+G ++ GFPR ++QA+++++++
Sbjct: 487 SELMSDGEMVPEDVVDTLLLDKLKSAPKAEGFVIQGFPRDMEQAEQYEKLVGR-----VD 651
Query: 137 AIYFKVEDDVILERLGGRLVHLPSGRSYHTKYNPPKIPGKDDITGEDLSQRPDDVPQTIK 196
A++ D E L +L+ R+ TK R D+ T+
Sbjct: 652 AVFLI---DCEEETLSQQLLD----RAKSTK-------------------RIDNNVNTVA 753
Query: 197 TRLENFHSQTKPMLDYYEKQGLLATINAQASITNVWRQIKDVFKS 241
R+ F T P+L +++ L +N ++ V ++ +F++
Sbjct: 754 KRIHAFRDNTLPVLKHFDDMEKLFVLNGESPAKAVAEELAIIFET 888
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 4/197 (2%)
Frame = +1
Query: 30 LVFIGAPGAGKGTHSYKLQNTFC-LCQISTGDLLRNEIRT-GTQLGK--QAKTIMEKGGL 85
+ F G P +GKGT +L + + +S GD++R +I T G+ K +M KG L
Sbjct: 1123 IFFAGGPASGKGTQCKRLLSRYTNAAHLSMGDIIRAQIATQGSADDKWDMMTDLMRKGEL 1302
Query: 86 VPDEIVINMVKNSLMKPDCAKGAILDGFPRTIQQAQKFDEILKNEGLSLFKAIYFKVEDD 145
P+E+ ++++ +SL A +++G+PR +QQ + F++ + + + I E+D
Sbjct: 1303 APEEVTVDLLMSSLKSQPDAHFYLVEGYPRNLQQLEDFNQKIGGQSFT----ILLDCEED 1470
Query: 146 VILERLGGRLVHLPSGRSYHTKYNPPKIPGKDDITGEDLSQRPDDVPQTIKTRLENFHSQ 205
++ RL R G++ S+R DD I +L F +
Sbjct: 1471 ILHYRLTMR------GKT---------------------SERIDDNLVAIGKKLTYFKNN 1569
Query: 206 TKPMLDYYEKQGLLATI 222
T P+L ++ G L +
Sbjct: 1570 TLPILKTFDDSGKLVVV 1620
>16388
Length = 857
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Frame = +3
Query: 138 IYFKVEDDVILERLGGRLVHLPSGRSYHTKYNPPKIPGKDDITGEDLSQR------PDDV 191
I F +EDD+ L+R GGR + YH ++ PP + TG ++ P +
Sbjct: 243 ILFDIEDDLCLKRAGGRTYTIQGEEQYHEEFKPPP---EGSATGVGKQEKVVPISDPSND 413
Query: 192 PQTIKTRLENFHSQTKPMLDYYEKQGLLATINAQASITNVWRQIKDVFK 240
+ I+ R+ +FH + ++ + G L ++A + NV+ +++ V +
Sbjct: 414 QEQIQFRITSFHDSWAKLDKWFMRFGTLKKVDAADTYHNVFLEVEKVME 560
>08194
Length = 523
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 86 VPDEIVINMVKNSLMKPDCAKGAILDGF 113
+PD+I++++V L DC+ G + DG
Sbjct: 426 LPDDILVDIVAERLQMEDCSVGVVFDGL 343
>11530
Length = 1156
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 158 LPSGRSYHTKYNPPKIPGKDDITGEDLSQRPDD---VPQTIKTRLENFHSQTK 207
L SG H +++ +PG+ ITG L+Q D VPQ++ T + T+
Sbjct: 948 LVSGAILHVEHDVTLVPGRLHITGGYLTQTVDSRTVVPQSLGTFRQRLQVSTR 1106
>10145
Length = 873
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = -2
Query: 120 AQKFDEILKNEGLSLFKAIYFKVEDDVILERLG-------GRLVHLPSGRSYHT 166
++ F + +N +LF+ ++F V G GR+VH GRS H+
Sbjct: 833 SRAFSTLGRNVRSTLFREVFFDVGTSTAFSTFGRGVHSSLGRIVHSMLGRSAHS 672
>02947
Length = 1628
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 193 QTIKTRLENFHSQTKPMLDYYEKQ 216
T K+RL+NFH++ K + YY Q
Sbjct: 618 NTFKSRLDNFHAEEKFTV*YYSAQ 547
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00899460__160.m00088acetyl-
CoA_acyltransferases_family_protein
(415 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02902 189 2e-48
19628 174 6e-44
19453 77 4e-22
13792 89 4e-18
17665 80 2e-15
>02902
Length = 2008
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 170/304 (55%), Gaps = 8/304 (2%)
Frame = +2
Query: 115 LEACATIASKIKMGVIDIGIGAGVENMSMYDM--------NKSVDPEKLSDAVFEHDKAR 166
+A + A +I++G+ + + G ENM+ + KL D ++E
Sbjct: 2 FQAIVSGAQEIELGMSQMVLVGGTENMTQAPFAVRDIRFGTRFGQDLKLEDMLWEGLTDS 181
Query: 167 NCIIPMGVTSENVAEAYNISREIQDRFAVESHRKAALAQEQGLFNEEIVPVHTIVKDKEG 226
+PMG+T+EN+A+ YNISR+ D+ A ++ + AQ+ G F++EI P+ VK K+G
Sbjct: 182 YVKLPMGMTAENLAQQYNISRQDCDQHAFQTQXRWQEAQKAGKFDDEIYPIK--VKGKKG 355
Query: 227 NEKEVTVTKDDGIRKETTFEGLSKLKPAFKPTGGSTTAGNASQVTEGAAGVLLARRSVAE 286
E D + T E L+KL P FK G + TAGNAS + +GAA ++LA +
Sbjct: 356 PEDFAV----DEHPRVTPVEVLAKLPPVFKKDG-TVTAGNASGICDGAAALILASEEAVK 520
Query: 287 KLGMPILAKFASYAVAGVPPEVMGIGPAFAIPEALKKANITVNDVDVYEINEAFASQAYY 346
+ LA+ SY AG P+VMGIGPA A AL+KA TV D+DV E+NEAFA Q
Sbjct: 521 ANNLTPLARLVSYGYAGCDPKVMGIGPAPASRAALEKAGKTVQDMDVVEVNEAFAPQFLA 700
Query: 347 SITKLGIDAKKVNPKGGAIALGHPLGCTGARQIATLIPELKRQKAKIGVTSMCIGTGMGA 406
+LG+D + N GGAIALGHPLG +GAR + L+ E++R K + S CIG G G
Sbjct: 701 VAKELGLDNARTNVNGGAIALGHPLGASGARITSNLVHEIRRSNLKYAMGSACIGGGQGI 880
Query: 407 ASVI 410
++
Sbjct: 881 TVIL 892
>19628
Length = 537
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/124 (66%), Positives = 100/124 (80%), Gaps = 1/124 (0%)
Frame = -2
Query: 291 PILAKFASYAVAGVPPEVMGIGPAFAIPEALKKANITVNDVDVYEINEAFASQAYYSITK 350
P+L S+AV G PP++MGIGPA AIPEALKKA +TVND+D++EINEAFASQA Y + K
Sbjct: 536 PVLGVLRSFAVTGCPPDIMGIGPAVAIPEALKKAGLTVNDIDIFEINEAFASQARYCVEK 357
Query: 351 LGIDAKKVNPKGGAIALGHPLGCTGARQIATLIPELKRQ-KAKIGVTSMCIGTGMGAASV 409
LGI +VNPKGGAIALGHPLGCTGAR I TL+ E+KR+ K +GV SMC+GTGMGAA++
Sbjct: 356 LGIPMDRVNPKGGAIALGHPLGCTGARMIGTLLHEMKRRGKRGMGVVSMCMGTGMGAAAI 177
Query: 410 IVNE 413
E
Sbjct: 176 FEYE 165
>19453
Length = 633
Score = 76.6 bits (187), Expect(2) = 4e-22, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Frame = -3
Query: 206 EQGLFNEEIVPVHTIVKDKEGNEKEVTVTKDDGIRKETTFEGLSKLKPAF-KPTGGSTTA 264
E F+ EIVPV ++ + G + V KD+ R + EGL KL+PAF K G+ TA
Sbjct: 364 EGWAFDAEIVPVS--IQSRTGVTE---VKKDEFPRAGCSIEGLQKLRPAFIKDGSGTVTA 200
Query: 265 GNASQVTEGAAGVLLARRSVAEKLGMPILAKFASYAVAGVPPEVMGIGPAFAIPEALKKA 324
GNAS + +GAA V++ + A+ + L + S+A AGV P +MG GP A+ A++KA
Sbjct: 199 GNASGINDGAAAVVVMSATEAKARSLQPLVRIVSWAQAGVDPSIMGTGPIPAVRAAVEKA 20
Query: 325 NITVND 330
TV +
Sbjct: 19 GWTVGE 2
Score = 46.2 bits (108), Expect(2) = 4e-22, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Frame = -1
Query: 172 MGVTSENVAEAYNISREIQDRFAVESHRKAALAQEQGLF 210
MG+T+ENVA+ + ++RE QD+FA++S K AQ+ GL
Sbjct: 465 MGITAENVAQQWKLTREEQDQFALQSQHKCEAAQKAGLL 349
>13792
Length = 1330
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Frame = +3
Query: 247 GLSKLKPAFKPTGGSTTAGNASQVTEGAAGVLLARRSVAEKLGMPILAKFASY-AVAGVP 305
G K K AF G+ TA NAS +T+GA+ L+ A +G LA + VA P
Sbjct: 831 GHGKTKAAFIKPHGTVTAANASFLTDGASACLIMSEEKALAMGYKPLAYLRDFLYVAQDP 1010
Query: 306 PEVMGIGPAFAIPEALKKANITVNDVDVYEINEAFASQA----------YYSITKLGIDA 355
+ + +GPA+A P L KA +T++D+ V+E +EAFA Q ++ +G+
Sbjct: 1011KDQLLLGPAYATPRILNKAGLTMSDISVFEYHEAFAGQILANMKALDSDWFGTNMMGLQG 1190
Query: 356 K-------KVNPKGGAIALGHPLGCTGARQIATLIPELKRQKAKI 393
K K+N GG+++LGHP G TG R + T L ++ +
Sbjct: 1191KAGAPALDKLNLWGGSLSLGHPFGATGVRLVTTAANRLHKEDGQF 1325
>17665
Length = 477
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%)
Frame = -3
Query: 336 INEAFASQAYYSITKLGIDAKKVNPKGGAIALGHPLGCTGARQIATLIPELKRQKAKIGV 395
+NEAFA+Q+ + LG D KVN GGAIALGHP+G +GAR + TL+ +K + AK GV
Sbjct: 475 LNEAFAAQSLAVVKDLGCDPAKVNVNGGAIALGHPIGASGARILVTLLHSMKHRGAKKGV 296
Query: 396 TSMCIGTGMGAA 407
++C+G GMG A
Sbjct: 295 AALCVGGGMGIA 260
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00147510__3700.m00006Coenzyme_A_transferase_family_protein
(494 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
22634 181 4e-46
09880 147 1e-40
31137 31 1.4
>22634
Length = 602
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/164 (55%), Positives = 116/164 (70%), Gaps = 1/164 (0%)
Frame = +3
Query: 192 FALVKAKKADRYGNLVFNRTARNFNQDMATASRCVIAEVEEIVENGEIDPDHVHIPGVFV 251
FALVKA KAD GNL+F +TA+NFN M A++ IAEVEEIV+ GEI P+ VH+P ++V
Sbjct: 3 FALVKAWKADTAGNLIFRKTAQNFNPPMXKAAKVTIAEVEEIVDVGEIRPEDVHVPHIYV 182
Query: 252 HRVYKSENVSKRIEKLTLDQGD-QKDTSASFKIREKIIKRAAQEVTNGMYVNLGIGIPTL 310
RV K E KRIE L + D +K T A+F R+KII+RAA E+ +GM+ NLGIG+P L
Sbjct: 183 QRVVKGEKYEKRIENLRYNMEDVKKPTDANFVKRQKIIRRAALELDDGMFANLGIGLPML 362
Query: 311 LPNYLPKGVNIELHSENXXXXXXKYPKPGQEDSDIINAGKETIT 354
NYL G+ + LHSEN YP PG+EDSD+INAGKE++T
Sbjct: 363 ASNYLKPGIKVHLHSENGILGLGPYPHPGEEDSDLINAGKESVT 494
>09880
Length = 893
Score = 147 bits (372), Expect(2) = 1e-40, Method: Compositional matrix adjust.
Identities = 77/116 (66%), Positives = 91/116 (78%), Gaps = 3/116 (2%)
Frame = +3
Query: 375 HLDLTMLGAMQVSKEGDIANWIIPGKMVKGMGGAMDLVQS-GSKVIVVMEHTAK-GKHKL 432
H+ LT+LGAMQVS+ GD+ANW+IPGKMVKGMGGAMDLV S G+KVI+ MEHTAK GKHK+
Sbjct: 168 HVSLTILGAMQVSQYGDLANWMIPGKMVKGMGGAMDLVSSYGTKVIITMEHTAKGGKHKI 347
Query: 433 LNSCSLPLTGKSVVDKVITEKAVFE-KRDGVLVLTEIAHESSLEDIKSTTGFNFEV 487
L CSLPLTGK+ VD +ITEK VFE +D L L E+A ++EDI TTG F V
Sbjct: 348 LEDCSLPLTGKNCVDMIITEKGVFEVDKDNGLTLVEMAEGENVEDIVETTGCEFSV 515
Score = 37.4 bits (85), Expect(2) = 1e-40, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 321 IELHSENXXXXXXKYPKPGQEDSDIINAGKE 351
+ L SEN +P+PG+ED+D+INAGK+
Sbjct: 8 VHLQSENGILGLGPFPRPGEEDADLINAGKK 100
>31137
Length = 761
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 414 SGSKVIVVMEHTAKGKHKLLNSCSLPLTGKSVVDKVITEKAVFEKRDGVLVLT-EIAHES 472
G VI EH + +L C++PL + V+TEKAV KR +L L ++A +
Sbjct: 97 CGMYVICAAEHLCR---ELCECCNVPL------NDVVTEKAVTLKRQQLLSLIFDLARQD 249
Query: 473 SL 474
SL
Sbjct: 250 SL 255
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00636970__91.m0011560s_Acidic_ribosomal_protein
(324 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01169 180 6e-46
37132 73 1e-13
>01169
Length = 1267
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 148/267 (55%)
Frame = +3
Query: 15 FIRRFYELLSKYDSIALCTLENVGSLQLQQIRRSLGSNNIMVIGKNTVVRKAVQLKSADL 74
+ + +L +Y + +NVGS Q+QQIR+ L I+++GKNT++RKA+
Sbjct: 261 YFLKITQLFDEYPKCFIVNADNVGSKQMQQIRQGLRGKAIVLMGKNTMMRKAI------- 419
Query: 75 PTDSKYDWYRQFGAPKPQLASLIPHLKNKIAYVFHNDPIFALKPKIESFVVPAPARVGTV 134
R P L L+P +KN + +VF + + ++ + + V APAR G +
Sbjct: 420 ---------RGHLDNNPGLEKLLPCIKNNVGFVFTREDLVEVRDLLLANKVQAPARTGAL 572
Query: 135 AQKDVMIPPGPTGMDPSQINFFHALSISTKIQKGQIEITKEVQVCTKGKKIGNSEVSLLE 194
A DV IP T + P + +FF AL I TKI KG IEI EV + +G+++G SE +LL
Sbjct: 573 APLDVKIPAQATPLGPEKTSFFQALQIPTKITKGTIEILNEVNLIKEGERVGQSESTLLN 752
Query: 195 KMNIQPFSYGMKCFSDYDNGEILTEEVLSISPSVILDAFAQNTLRIAAVSLATGYVTAPS 254
+NI PF+YG+ + YD+G I + VL+I+ IL+ F +AA+SLA GY T S
Sbjct: 753 MLNISPFTYGLVIENVYDSGTIFSPAVLNITDDDILNTFMSGVRNVAALSLAIGYPTTAS 932
Query: 255 VPHFIQNAFKDLAAIGMETGYKFKEIE 281
PH I N FK L AI +ET F E E
Sbjct: 933 APHSIINGFKRLLAIAVETDIDFAEAE 1013
>37132
Length = 561
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%)
Frame = -1
Query: 196 MNIQPFSYGMKCFSDYDNGEILTEEVLSISPSVILDAFAQNTLRIAAVSLATGYVTAPSV 255
+NI PFSYG+ YD+G I + E+L I P + F Q +A+V L+ GY T S
Sbjct: 561 LNISPFSYGLLVSQMYDSGSIFSPEILDIKPEDLRAKFQQGVANLASVCLSVGYPTIASA 382
Query: 256 PHFIQNAFKDLAAIGMETGYKFKE 279
PH I N FK+L AI T +FKE
Sbjct: 381 PHSIANGFKNLLAIAATTEVEFKE 310
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00263380__23.m00299Cytosol_aminopeptidase_family,
_catalytic_domain_containing_protein
(547 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08142 177 1e-44
05775 176 3e-44
02936 70 2e-12
20276 65 9e-11
35330 32 0.82
>08142
Length = 1929
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 180/337 (53%), Gaps = 7/337 (2%)
Frame = -3
Query: 209 LTDEDFQFVQKAAYYTLYARQLGNLRADIANTEFFLKECKNIVAANPGKVILEYLKGEEL 268
++ ED Q + A+ A ++ ++ +T FL+E K + A+ + E ++GEEL
Sbjct: 1618 VSAEDVQALTAASEGVRLAAKITDMPCAEMHTNAFLQEIKTV--ADKLGITAEIIQGEEL 1445
Query: 269 VEQGLNLAHAVGKGSKNPPIVANLTYFGDQSRPNEV--DIAFIGKGVCFDAGGLNIKPTG 326
+G + VGK + NPP +A L++ RP+ +IA++GKG+ +D GGL +K
Sbjct: 1444 KRRGFGGIYGVGKAALNPPALAXLSH-----RPSGATQNIAWVGKGIVYDTGGLCLKSKT 1280
Query: 327 FMETMYMDKGGAVATLTSFRAAVELGLKVNLTVTIGLVENFLSSTSYRPSDIIKSHKGLT 386
M M D GGA L +F +AV+LG + NL L EN + + RP DI+K + G T
Sbjct: 1279 GMCGMKRDCGGAAGMLGAFYSAVKLGFRQNLHALFCLAENAVGPEAQRPDDIVKMYSGRT 1100
Query: 387 VEIGNTDAEGRLVLADCMSWTQQKHKPKTMIELSTLTGACVVALGEEQAGLFTNDEALSK 446
VEI NTDAEGRLVL D +++ + K +T+++++TLTGA +A G+ AG+ TN E++
Sbjct: 1099 VEINNTDAEGRLVLGDGVAYAHKDLKCETIVDMATLTGAQGIATGKYHAGVVTNSESMEA 920
Query: 447 ELQEASKVSGDSLWRLPIT-DAHREAMKGTYSDLNNSGKTRYGGA--SQAAAFLERFVEK 503
A + SGD + LP T + H +D+ NS R G A S A F+ +
Sbjct: 919 ACVTAGRCSGDLVHPLPYTPELHFVEFSSVLADMKNSVAER-GNAQVSCAGLFIHSHIGF 743
Query: 504 DVK--WAHIDIAGPAESKSDKGQWTTGMTGFGVQLLL 538
D W H+D+A P TG+GV LL+
Sbjct: 742 DFPGTWLHVDMASPVCVGERA-------TGYGVALLV 653
>05775
Length = 1303
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 176/319 (55%), Gaps = 2/319 (0%)
Frame = +2
Query: 226 YARQLGNLRADIANTEFFLKECKNIVAANPGKVILEYLKGEELVEQGLNLAHAVGKGSKN 285
+AR+L ++ F +E + ++ + L E +G+ +V +GS+
Sbjct: 65 FARRLMEAPSNRMTPGIFCEEVTEKLQNTCSIIVRDKLWAEA---EGMGAFLSVAQGSEE 235
Query: 286 PPIVANLTYFGDQSRPNEVDIAFIGKGVCFDAGGLNIKPTGFMETMYMDKGGAVATLTSF 345
P + Y G S + V A +GKG+ FD GG+++KP G M+ M D GGA + +
Sbjct: 236 PLRFLEIDYQGASSSSSPV--ALVGKGITFDTGGISLKPPGDMDKMRADMGGAACVVGAI 409
Query: 346 RAAVELGLKVNLTVTIGLVENFLSSTSYRPSDIIKSHKGLTVEIGNTDAEGRLVLADCMS 405
AA L L +N+ I L EN S T+ +P D++ + G T++I NTDAEGRL+LAD +
Sbjct: 410 LAASRLQLPINIKGLIALCENMPSGTAIKPGDVVTAKNGKTIQIDNTDAEGRLILADTLC 589
Query: 406 WTQQKHKPKTMIELSTLTGACVVALGEEQAGLFTNDEALSKELQEASKVSGDSLWRLPIT 465
+ + P+ +++++TLTGA ALG AG +TN EA LQ+A SGD LWR+P+
Sbjct: 590 YA-ETFNPRLVMDMATLTGAIDXALGAGAAGAYTNCEATWDHLQQAGAHSGDRLWRMPLF 766
Query: 466 DAHREAMKGT-YSDLNNSGK-TRYGGASQAAAFLERFVEKDVKWAHIDIAGPAESKSDKG 523
++ + + +DLNN GK +R G+ AAAFL+ FV W H+DIAG +K +
Sbjct: 767 KLYQSHVTSSQLADLNNIGKYSRSAGSCTAAAFLKEFVTSK-HWVHLDIAGVMMNKDEVP 943
Query: 524 QWTTGMTGFGVQLLLHYLK 542
T GM+G + ++ +L+
Sbjct: 944 YLTKGMSGRPTRTIVEFLQ 1000
>02936
Length = 1694
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Frame = -1
Query: 328 METMYMDKGGAVATLTSFRAAVEL---GLKVNLTVTIGLVENFLSSTSYRPSDIIKSHKG 384
M M+ DK GA A F+ EL GLKV + V N + SY +II S
Sbjct: 1691 MAGMHRDKCGAAAVAGFFKILAELKPRGLKV--VGGMPFVRNSVGEESYVADEIITSRAK 1518
Query: 385 LTVEIGNTDAEGRLVLADCMSWTQQKHKPKTMIEL---STLTGACVVALGEEQAGLFTND 441
V +GNTDAEGR+V+AD + ++ K EL +TLTG V A+G + + N
Sbjct: 1517 KRVRVGNTDAEGRMVMADVLCRFKELAKDAVDPELFTIATLTGHAVRAMGPNYSIIMDNG 1338
Query: 442 EALSK----ELQEASKVSGDSLWRLPITDAHREAMKGT--YSDL---NNSGKTRYG-GAS 491
A K E+Q++ + GD I E KG Y D+ NN T G
Sbjct: 1337 PARKKRTSYEMQDSGDMYGDPFEISTIRRDDYEFHKGKSEYEDILQCNNQPSTMTARGHQ 1158
Query: 492 QAAAFL-------ERFVEKD--VKWAHIDIAG 514
+AFL + ++ D + ++H+DIAG
Sbjct: 1157 TPSAFLIMTSGMDKHGIDSDQPLPYSHLDIAG 1062
>20276
Length = 404
Score = 64.7 bits (156), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Frame = +2
Query: 377 DIIKSHKGLTVEIGNTDAEGRLVLADCMSWTQQKHKPKTMIELSTLTGACVVALGEEQAG 436
D++ ++ + N G + +AD M + QQ +KP+ ++++ ++ A+G G
Sbjct: 2 DVVTLLNAKSMAVRNISRAGVVNIADPMLYGQQTYKPRLVVDVGSMCVGIKKAVGGGATG 181
Query: 437 LFTNDEALSKELQEASKVSGDSLWRLPITDAHREAMKGTYS-DLNNSGKTRYGGASQAAA 495
+++N + K+ Q A ++GD LWR P+ +++ + S DL N G + + AAA
Sbjct: 182 IWSNSHYIWKQFQRAGSLTGDRLWRFPLWRFYKDRVANNISYDLANDGDG-HASSCLAAA 358
Query: 496 FLERFVEKDVKWAHID 511
L V WAH+D
Sbjct: 359 VLHELVPCS-DWAHLD 403
>35330
Length = 205
Score = 31.6 bits (70), Expect = 0.82, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 337 GAVATLTSFRAAVELGLKVNLTVTIGLVENFLSSTSYRPSDIIKSHKGLTVEIGNTDAEG 396
GA + RAA L L VN+T + L E+ S + + D++ G+T+ I +
Sbjct: 18 GAALCVGVLRAAAALSLPVNITAVLPLCEHMPSGMAVKCGDVVTLLNGVTMGIKDVGKAH 197
Query: 397 R 397
R
Sbjct: 198 R 200
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00193640__16.m003032-oxoglutarate_dehydrogenase,
_E1_component_family_protein
(992 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
15717 176 3e-44
33389 56 5e-09
36558 30 4.0
>15717
Length = 470
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 106/141 (75%)
Frame = -2
Query: 633 GFNIRISGQDVERGTFSQRHAVLNDQVSVKKIKPILQCLPENQRNDQRFTVVNSHLSEYG 692
G ++R+SGQDVE GTFS RH VL+ Q KK+ L + E+Q ++V NS LSEYG
Sbjct: 466 GIHVRLSGQDVEXGTFSHRHHVLHHQEIDKKMFVPLNHMFEDQA---EYSVCNSSLSEYG 296
Query: 693 VLGFEYGYSITNPNCLTIWEGQFGDFANGAQIIIDNYLASGEAKWNVQTGLVVLLPHGMD 752
VLGFE GYS+TNPN L IWE QFGDFAN AQ IID +++SG+AKW Q+GLV+LLPHG +
Sbjct: 295 VLGFELGYSMTNPNALVIWEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYE 116
Query: 753 GQGPEHSSGRMERFLQMCDDD 773
G GPEHSS R+ERFLQ +DD
Sbjct: 115 GMGPEHSSCRIERFLQQSNDD 53
>33389
Length = 894
Score = 55.8 bits (133), Expect(2) = 5e-09, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = +1
Query: 911 RSAIQNYKNAEFIWCQEEHENSGAWTYIEPRLEIILDELKSEGSIKHNKLNYIGRKRQAS 970
R + Y A+ W QEEH+N G + Y+EPR+ + ++ +L Y GR A+
Sbjct: 49 RGRLMKYPKAKVCWVQEEHKNMGPYQYVEPRMRTVFKKMNDV-----RELEYAGRFPSAA 213
Query: 971 TATGSTKVHKLELESIL 987
ATG+ ++H +EL + +
Sbjct: 214 AATGNKQMHVIELSTFM 264
Score = 23.9 bits (50), Expect(2) = 5e-09, Method: Composition-based stats.
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 896 IVRIEQIAPFPY 907
I RIEQ+ PFP+
Sbjct: 2 ISRIEQLTPFPF 37
>36558
Length = 616
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 1 MLAQKTSKAVSKMLFKNKSFFNFRTTKNLLVQKENPSNLY 40
++++K+S A LFK+ S+FN ++ L Q+ S LY
Sbjct: 166 VISEKSSTACGSCLFKSTSYFNGTVFRDTLQQEMKRSGLY 47
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00502380__3716.m00107peptidase_M16_inactive_domain
(513 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
35179 174 6e-44
03943 32 0.87
02855 32 0.91
27283 30 1.8
06130 28 7.4
>35179
Length = 1860
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 120/445 (26%), Positives = 205/445 (46%), Gaps = 5/445 (1%)
Frame = +2
Query: 65 RVETLANGVRLXXXXXXXXXXXXXXXXXXXGTRQETLETSGVAQFVQRLVLRGTSKRNRE 124
RV TL NG+R+ G+R E + +GVA F++ + +GT R++
Sbjct: 164 RVSTLENGLRVATEDSGIPTCTVGLWIDA-GSRFENEKNNGVAHFLEHMAFKGTKSRSQT 340
Query: 125 QIEKELALLGGNLKVQVGRETTTYTLSVLPENVEKAVDFLGDILQNSVFNKQQVEAEKEA 184
+E E+ +G +L RE T Y ++ KAVD L DI+QNS+ +Q++E E+
Sbjct: 341 DLELEVENMGAHLNAYTSREQTVYYAKCFQNDLPKAVDVLSDIIQNSLLGEQEIERERGV 520
Query: 185 VYNNALSAQNDQQGLLLENIHFTAYRDHYFGQPTHGIRENLHNITDEVVKNFVKTNYVGS 244
+ + + Q ++ +++H TA++ G+ G +N+ +I + ++ T+Y G
Sbjct: 521 ILREMQEVETNLQEVVFDHLHATAFQGTALGRTILGPTQNIQSINRNDLLEYIGTHYKGP 700
Query: 245 NFVVAAAGNVNSQAFLQAAEKAFGTVAQKDATTFVPNTEKPYFTPSYMTIRDDEMHNLNV 304
V+AAAG VN + A K FG+++ +P FT S + +RDD M +V
Sbjct: 701 RMVLAAAGGVNHDELVDLASKHFGSLSTGYEGE-IPVLPPCRFTGSEIRVRDDSMPLAHV 877
Query: 305 GVFFEAPSWTDPDFFTINFFQRILGEYQADKYTGQH----LNTSDRQYSLIHKELGNLPD 360
V E W +PD + ++G + G + L + + L H
Sbjct: 878 AVAVEGCGWQNPDNIALMVANTLIGSWDRSYGGGANHASPLAAASAEAGLCHS------- 1036
Query: 361 VTIHKTHYLPYSDTGLFGSYFYGNEIFGNQMLFLSQMILSEYASYINQAEIYRARAKY-F 419
++ Y+DTGL+G YF +++ ML +Q S + + E+ RA+
Sbjct: 1037---FQSFNTCYTDTGLWGLYFVSDKMQIEDMLHNAQAEWMRLCSSVTEFEVTRAKNLLKT 1207
Query: 420 NELLAEQNSADIASSIATQVTYLNRRVPRSEVAKRISSLDSGLINRAATRWFWDKELAIV 479
N LL S IA + Q+ RR+P E+ RI ++++ ++ T++ +DK A+
Sbjct: 1208NMLLQLDGSTPIAEDVGRQMLCYGRRIPLPELEARIEAVNAKVVRDVCTKYIYDKCPAVA 1387
Query: 480 TWGPSHGLIAGSHYNRSIKRSTLGW 504
GP L YNR RS + W
Sbjct: 1388GVGPIEQL---PDYNR--IRSAMYW 1447
>03943
Length = 1371
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -3
Query: 296 DDEMHNLNVGVFFEAPSWTDPDFFTINFFQRILGEYQADKYTGQHLNTSDRQYSLIHKE 354
D+ + NL VGVFFE D F N+F L E +D +T + + RQ + ++++
Sbjct: 655 DESLANLQVGVFFEKKELRD---FIANYFVTDLNE--SDDHTDSEIEMAARQRAHVNQD 494
>02855
Length = 931
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1
Query: 296 DDEMHNLNVGVFFEAPSWTDPDFFTINFFQRILGEYQADKYTGQHLNTSDRQYSLIHKE 354
D+ + NL VGVFFE D F N+F L E +D +T + + RQ + ++++
Sbjct: 667 DESLANLQVGVFFEKKELRD---FIANYFVTDLNE--SDDHTDSEIEMAARQRAHVNQD 506
>27283
Length = 910
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 313 WTDPDFFTINFFQ---RILGEYQADKYTGQHL 341
WT P F I+FFQ R+L E+ + Y QH
Sbjct: 627 WTLPVCFIISFFQRFLRVLKEWTIETYFWQHF 532
>06130
Length = 1831
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = -2
Query: 399 LSEYASYINQAEIY----RARAKYFNELLAEQNSADIASSIATQVTYLNRRVPRSEVAKR 454
++++ +IN + + +AKY + ++N +T+ +R+P+ V+K
Sbjct: 456 IAKFLPFINIPRMKVNPNKIKAKYSACIFIKKNHMTKFLPFKENITF*RKRIPKQAVSKT 277
Query: 455 ISSLDSGLINRAATRWFWDKELAIVTWGPSHGLIAGS 491
+++ N+ ++ L I+ W SH L A S
Sbjct: 276 VTTKVFISKNQPQINITHNRALPILPWASSHWLRAFS 166
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00080030__3828.m01509Hsp90_protein
(710 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01628 172 3e-43
11278 163 2e-40
15623 142 5e-34
25874 113 2e-25
27487 62 8e-10
04401 29 5.9
>01628
Length = 2109
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 214/441 (48%), Gaps = 12/441 (2%)
Frame = -3
Query: 263 ERFNLVQAIWTRSKFSVTEEEYVKFWEYISNQKMKYFAKLHYEVDVPLNIKSLLYIPA-A 321
E N + +WTR+ +T EEY +F++ ++N + A H+ V+ L ++LL+IP A
Sbjct: 1957 EELNKTKPLWTRNPDDITAEEYAEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPKRA 1778
Query: 322 HAEKMGFSQEQMAVSLYCKKVLIKANCQELLPNWLRFVKGVVDCEDLPLNISRENYQDSS 381
+ +++ + LY ++V I NC++++P +L FVKGVVD EDLPLNISRE Q S
Sbjct: 1777 PFDMFENKKKKNNIKLYVRRVFIMDNCEDIIPEYLNFVKGVVDSEDLPLNISREMLQQSK 1598
Query: 382 LIQKLKQVVTKRVLKFLDEEANKNPAEYNKWFQDFQFFIKEGLAMDVDYQEQLFKLCRFN 441
+++ +++ + K+ ++ +D+ A ++ YNK+++ F +K G+ D ++++ R++
Sbjct: 1597 ILKVIRKNLVKKCMELIDDLA-EDKDNYNKFYEQFAKNLKLGIHEDSTNRKKISDFLRYH 1421
Query: 442 VDYSKD-LVSLEDYVSKMKPGQQKIYYALLPNRESADSSPFIEPFKGTGIPIIYTFINID 500
S D +V+ ++YVS+MK Q+ IYY RE+ +S F+E K G ++Y ID
Sbjct: 1420 SSQSADEMVTFKEYVSRMKDNQKDIYYITGETREAVQNSAFVERVKKRGFEVLYMVDPID 1241
Query: 501 EMIYQTVGSYKGFQFVNVEGDFNEIXXXXXXXXXXXXXXXXXXXXXXMDSDEITPFCLWV 560
E Q + Y G V V + E+ E C +
Sbjct: 1240 EYCVQQLKEYDGKNLVCVTKEGLELPEDEAEKKKFEEAKA-----------EFEGLCKAM 1094
Query: 561 KNELQPIVTKVVVSERLTNSPAIVXXXX------XXXXXXXXXXXEQNNVGDISKNLTME 614
K L V KV VS+RL +SP + + + +G ++ E
Sbjct: 1093 KEILDKKVEKVTVSQRLVSSPCCIVTSQYGWSANMERIMKAQALRDTSTMGYMAAKKHFE 914
Query: 615 INPNHELIYKIN---EVRKQDQQTASLILRQLCDNCMVTAGIP-TDPKRFNDRIQNMMSK 670
INP+H ++ + + K D+ L + L + ++++G DP +RI M+
Sbjct: 913 INPDHPIVKTLKVKCDADKNDKSVKDLCM-LLFETALLSSGFTLEDPTSHANRIHRMVKL 737
Query: 671 ILDNIITSKDSNAFASRSQAD 691
L I DS A+ + AD
Sbjct: 736 GLG--IDEDDSTPEAAEAPAD 680
>11278
Length = 988
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 146/224 (65%), Gaps = 13/224 (5%)
Frame = +1
Query: 48 INVEQLK--KQDVEQMAFKTETKKLLDIVAKSLYTDKEVFLRELLSNASDAIEKQRFLN- 104
+NV Q+K ++ E+ AF+ E +++ ++ SLY +KE+FLREL+SNASDA++K RF++
Sbjct: 220 LNVAQMKELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRFMSL 399
Query: 105 SQKDN-NDDDDFKIQVECNTNKRQIIISDNGVGFTRDQLINDLGTIARSGSQQFVKEVGK 163
+ KD + D+ I+++ +T + ++D G+G T + L+ +LGTIA+SG+ F+ ++G+
Sbjct: 400 TNKDVLHATDELSIKIKADTENHVLHVTDTGIGMTYNDLVKNLGTIAKSGTSDFLAKMGE 579
Query: 164 GSA---DNIIGQFGVGFYSSFIVGDSVQVISKSEKESQAHMWQSDGNGEFEIS------T 214
S +++IGQFGVGFYSSF+V D V V SK + Q ++W+SD F ++ T
Sbjct: 580 ASPTELNDLIGQFGVGFYSSFLVADRVVVTSKHNDDEQ-YVWESDAES-FSVAKDPRGNT 753
Query: 215 VGDCGFKRGTRIIIHLRPECQEFSKAEDVKKIIQKYSNFINFPI 258
+G RGT I +HL+ E +F +A + +++KYS FINF I
Sbjct: 754 LG-----RGTTISLHLKEEAHDFLEAGTLTSLVKKYSQFINFNI 870
>15623
Length = 2811
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 118/181 (65%), Gaps = 2/181 (1%)
Frame = -1
Query: 82 KEVFLRELLSNASDAIEKQRF--LNSQKDNNDDDDFKIQVECNTNKRQIIISDNGVGFTR 139
+E+FLREL+SN+SDA++K R+ L + D I++ + ++ + I D+G+G T+
Sbjct: 585 QEIFLRELISNSSDALDKIRYESLTDPSKLDAGKDLHIRIVPDKERKTLTIEDSGIGMTK 406
Query: 140 DQLINDLGTIARSGSQQFVKEVGKGSADNIIGQFGVGFYSSFIVGDSVQVISKSEKESQA 199
L+N+LGTIA+SG++ F++ + G+ ++IGQFGVGFYS+++V D V V SK+ + Q
Sbjct: 405 ADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADRVVVESKNNDDEQ- 229
Query: 200 HMWQSDGNGEFEISTVGDCGFKRGTRIIIHLRPECQEFSKAEDVKKIIQKYSNFINFPIS 259
+ W+S G F I+ RGTRI + ++ + QE+ + +K++I+K+S FI +PI
Sbjct: 228 YTWESSAGGSFTIAAPTGTPMGRGTRITLFMKEDQQEYLEERRIKEVIKKHSQFIGYPIK 49
Query: 260 V 260
+
Sbjct: 48 L 46
>25874
Length = 476
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Frame = +1
Query: 169 IIGQFGVGFYSSFIVGDSVQVISKSEKE-SQAHMWQSDGNGEFEISTVGDCGFKRGTRII 227
+IGQFGVGFYS+F+VGD V V +KS + S A W SDG+G +E+S G +RGT+I+
Sbjct: 1 LIGQFGVGFYSTFMVGDRVDVFTKSHQPGSPALKWSSDGSGAYEVSEAE--GVQRGTKIV 174
Query: 228 IHLRPECQEFSKAEDVKKIIQKYSNFINFPISVNGERFNLVQAIW 272
+HL+ + +F+K E + +++KYSNF+ PI +NG+R N+VQA+W
Sbjct: 175 VHLKGDSYDFAKEEIITGVVKKYSNFVGVPIYLNGKRVNIVQALW 309
>27487
Length = 377
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Frame = -3
Query: 401 EANKNPAEYNKWFQDFQFFIKEGLAMDVDYQEQLFKLCRFNVDYS-KDLVSLEDYVSKMK 459
E +N +Y K+++ F +K G+ D + +L L RF+ S +D +SL++Y+++MK
Sbjct: 303 EIAENNDDYKKFYEQFSKNLKLGIHEDTTNRTKLVDLMRFHTSKSGEDQISLKEYIARMK 124
Query: 460 PGQQKIYYALLPNRESADSSPFIEPFKGTGIPIIYTFINID 500
GQ+ I+Y +R + +SPFIE + G ++Y ID
Sbjct: 123 EGQKDIFYITGESRAAVQASPFIEQLRKKGYEVLYLVDPID 1
>04401
Length = 1241
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 181 FIVGDSVQVISKSEKESQAHMWQSDGNGEFEISTVGDCGFK 221
I GDSV V +++ + +++ DG G + + GDCG +
Sbjct: 1215 IISGDSVVVDNEAAVVTVGELYRHDGLGGWGLGRAGDCGLR 1093
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00043870__3824.m02827dihydrolipoamide_dehydrogenase_family_p
rotein
(488 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
22236 167 6e-42
24255 104 7e-23
14784 59 2e-16
04020 41 0.001
15479 29 5.0
23711 29 5.5
02597 28 8.4
>22236
Length = 578
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 123/197 (62%), Gaps = 6/197 (3%)
Frame = -2
Query: 161 IIIATGSEPTPFPGLNFDEKVIISSTGALSLPQIPKKLIVIGAGVIGLEMGSVYQRLGTQ 220
I+IATGSE TPF G+ DE+ ++SSTGALSL ++P+K+IVIGAGVIG+E+GSV+QRLG +
Sbjct: 577 ILIATGSEVTPFAGIEIDEQTVVSSTGALSLEKVPEKMIVIGAGVIGVELGSVWQRLGAE 398
Query: 221 VTVIEFADQICPFLDTDVAKAFQQSLKKQGLQILTGHKVVSGQ--NFGTHGSVVVE---- 274
VT +EF + Q + Q Q H+V +G + G G + +
Sbjct: 397 VTCVEFLE---SRGGYGYRHGGVQEVPAQSGQ--ARHEVQAGHQGHLGHQGRQLHQGGHR 233
Query: 275 PVKGGPSQTFEADHILVSTGRRPYVDGLNAKEIGIEFDNKNRIITNSHLQTNIPNIYAIG 334
+G + D +LV GRRPY + L +G++ DN+ R+ NS QT IP+IYAIG
Sbjct: 232 ECQGRXENELDCDVLLVCIGRRPYTEXLGLDSVGLQLDNRGRVQVNSRFQTTIPSIYAIG 53
Query: 335 DVIPGPMLAHKGEEEGI 351
DVI GPMLAHK E+EGI
Sbjct: 52 DVIQGPMLAHKAEDEGI 2
>24255
Length = 1514
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Frame = -1
Query: 409 AKANNDYDGLIKILTEKDTDKLLGVHIMNAQAGELIGEATLAVEYGAAAEDIGRTCHAHP 468
AK NND DG +KIL +K TD+LLG HI+ + AGELI EA LA+EYGA+ EDI R CHAHP
Sbjct: 1514 AKCNNDTDGFVKILGDKKTDRLLGAHIVASVAGELINEAALAMEYGASCEDIARVCHAHP 1335
Query: 469 TISEALKEACMAA-YDKPIHF 488
T++EA +EA +AA + KPI+
Sbjct: 1334 TVAEAFREANIAASFGKPINM 1272
>14784
Length = 1670
Score = 58.9 bits (141), Expect(2) = 2e-16, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Frame = -3
Query: 360 KGGHVNYDAIPSVIYTHPEVAWVGKTEQELK----AANIKYNKGSF-PMLANSRAKANND 414
K ++Y+ IP+VI++HP V +G +++E + A NIK F PM A +
Sbjct: 1326 KDWKLDYNNIPTVIFSHPPVGTIGPSQEEAENQYGAENIKVYTSVFTPMY---YAVTDTK 1156
Query: 415 YDGLIKILTEKDTDKLLGVHIMNAQAGELIGEATLAVEYGAAAEDIGRTCHAHPTISEAL 474
+ +K++ K T+K++G+H++ E++ ++AV GA E HPT SE L
Sbjct: 1155 FKCHMKLICLKPTEKVIGLHMVGQGCDEMLQGFSVAVVMGATKEQFDACVAIHPTSSEEL 976
Score = 44.7 bits (104), Expect(2) = 2e-16, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = -2
Query: 287 DHILVSTGRRPYVDGLNAKEIGIEFDNKNRIITNSHLQTNIPNIYAIGDVIPGPML 342
D +L + GR P D ++ + +GI+ D+K I + + T+ PN+YA+GDV +L
Sbjct: 1552 DCLLFAIGRVPNSDNIDLQNLGIQTDSKGHISVDEYQNTSAPNVYALGDVCGRALL 1385
>04020
Length = 1820
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Frame = -2
Query: 351 IAAVEYIAGKGGHVNYDAIPSVIYTHPEVAWVGKTEQ----ELKAANIKYNKGSFPMLAN 406
+ A AG +Y ++ + ++T E +G +E+ + NI+ +F L
Sbjct: 1816 LLARRLFAGSSILCDYQSVATTVFTPIEYGAIGYSEENATEKYGEDNIEVYHSNFMPLEW 1637
Query: 407 SRAKANNDYDGLIKILTEKDTDKLLGVHIMNAQAGELIGEATLAVEYGAAAEDIGRTCHA 466
+ ++ I + + ++++G H++ AGE+ +LA+ G ED T
Sbjct: 1636 TVPHREDNVCYAKLICNKAENERVIGFHVVGPNAGEITQGYSLAMRKGVTKEDFDATIGI 1457
Query: 467 HPTISEAL 474
HPT SE
Sbjct: 1456 HPTCSETF 1433
>15479
Length = 1168
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 240 KAFQQSLKKQGLQ--ILTGHKVVSGQNFGTHGSVVVEPVKG 278
K Q L+K Q +L HKV +G + G+ V+EPVKG
Sbjct: 43 KVMSQLLRKAKEQDLVLPAHKVETGDEY--EGATVIEPVKG 159
>23711
Length = 425
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 49 KTACVEKRGSLGGTCLNVGCIPSKALLNISQKYYDASKHYK 89
K C +K L TC CIP+K+LLN + + YK
Sbjct: 71 KYRCXDKTPLLSSTC----CIPNKSLLNSDSNHMQFTPKYK 181
>02597
Length = 463
Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 52 CVEKRGSLGGTCLNVGCIPSKALLNISQKYYDASKHYK 89
C +K L TC CIP+K+LLN + + YK
Sbjct: 210 CYDKTPLLSSTC----CIPNKSLLNSDSSHMQFTPKYK 311
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00704010__110.m001492-
oxoisovalerate_dehydrogenase_beta_subunit
(358 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26410 167 7e-42
11173 71 8e-13
12789 37 0.008
>26410
Length = 1216
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 155/291 (53%), Gaps = 9/291 (3%)
Frame = +1
Query: 76 LNEKYGTDRVFNTPLCEQGIAAFGIGLATNGVTAIAEIQFGDYIFPAFDQIVNEAAKYRF 135
L +KYG RV +TP+ E G A +G A G+ I E ++ A DQ++N AAK +
Sbjct: 1 LWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLKPICEFMTFNFSMQAIDQVINSAAKTFY 180
Query: 136 RSGNQFDCGSLTIRTTWGAVGHGALYHSQSPEAYFAHTPGLKVVIPRDPIQCKGLLLASI 195
S Q + R GA A HSQ A+++ PGLKV+ P C+GLL A+I
Sbjct: 181 MSAGQVPV-PIVFRGPNGAALGVAAQHSQCFAAWYSSCPGLKVLSPYSSEDCRGLLKAAI 357
Query: 196 RDKNPVIFFEPKALYRNA-----EADVPVMDYELDLHVADVIQEGTDITLIAWGTQV-RV 249
RD NPV+ E + +Y A EA P D+ + A + +EG+ +TL+A V R
Sbjct: 358 RDPNPVVVLENEIMYGTAFDVSDEALSP--DFVAPIGKAKIEREGSHVTLVAHSIGVGRC 531
Query: 250 IQEAAKLAKEKLGVSCEVIDLQTIYPYDIDTLQKSVNKTGRCIISHEAPITCGVGSELAA 309
++ A +LA + GV CE+++L+++ P D +T+ KSV KT + CG+GSE+ A
Sbjct: 532 VEAAKELAGQ--GVECEIVNLRSLRPMDDETIIKSVMKTNHLVTVEGGWPQCGIGSEITA 705
Query: 310 NIQEK-CFLRLESPVKRVCGFDTPFPLVH--EPIYLPDKWRVFDAIKKSVN 357
I E F L++PV RV G D P P E LP + V A+KKS+N
Sbjct: 706 RIMESPAFNYLDAPVYRVTGADVPMPYTKSLEERALPQSFNVITAVKKSLN 858
>11173
Length = 641
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Frame = -3
Query: 231 VIQEGTDITLIAWGTQVRV-IQEAAKLAKEKLGVSCEVIDLQTIYPYDIDTLQKSVNKTG 289
+++ G DIT++A V +Q AA+LAK+ G+ EVI+L++I P D+ T+ SV KT
Sbjct: 636 IMKAGKDITIVAHSKAVETALQSAAELAKK--GIEAEVINLRSIRPLDMATIFASVRKTH 463
Query: 290 RCIISHEAPITCGVGSELAAN-IQEKCFLRLESPVKRVCGFDTPFP 334
I GVG+E+ A ++++ F L++PV R CG D P P
Sbjct: 462 HLITVENGWPQHGVGAEICARFMEDQHFFELDAPVWRCCGVDVPMP 325
>12789
Length = 2095
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 90/245 (36%), Gaps = 14/245 (5%)
Frame = +3
Query: 83 DRVFNTPLCEQGIAAFGIGLATNGVTAIAEIQFGDYIFPAFDQIVNEAAKYRFRSGNQFD 142
DR + EQ + IG T T F ++ AFDQI A N
Sbjct: 1152 DRFVECFIAEQNLVGVAIGCETRRRTVPFVSTFAAFLSRAFDQIRMAA----ISQSNVNF 1319
Query: 143 CGSLTIRTTWGAVGH-GALYHSQSPEAYFAHTPGLKVVIPRDPI----------QCKGLL 191
CGS ++G G + A F P V P D + +G+
Sbjct: 1320 CGS----HAGISIGEDGPSQMALEDIAMFRSIPDCTVFYPSDAVSTERAVELAANTRGMC 1487
Query: 192 LASIRDKNPVIFFEPKALYRNAEADVPVMDYELDLHVADVIQEGTD-ITLI-AWGTQVRV 249
N + ++P + +A V V Q +D +T+I A T
Sbjct: 1488 FIRTSRPNVPVIYQPSETFTVGKAKV-------------VRQSASDQVTVIGACVTLAEA 1628
Query: 250 IQEAAKLAKEKLGVSCEVIDLQTIYPYDIDTLQKSVNKT-GRCIISHEAPITCGVGSELA 308
++ A +LA GV+ +ID TI P D DT+ + T GR I + + G+G +
Sbjct: 1629 MKAADELAGS--GVNIRIIDPFTIKPLDADTIISNARATSGRIITVEDHYMEGGIGEAVC 1802
Query: 309 ANIQE 313
+ + E
Sbjct: 1803 SAVSE 1817
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00059190__3707.m00147EF_hand_family_protein
(1011 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07678 169 7e-42
00167 138 1e-32
26849 83 1e-30
12671 80 4e-15
17977 48 2e-05
22063 44 2e-04
15966 44 2e-04
08108 43 5e-04
14945 42 0.001
14594 42 0.002
05237 38 0.018
26610 37 0.042
28765 37 0.050
17484 35 0.10
26019 35 0.12
02929 35 0.16
03732 34 0.33
01491 33 0.59
04067 33 0.75
01019 32 1.1
14366 32 1.2
27864 32 1.2
36530 32 1.4
38338 32 1.6
39823 31 3.3
19912 30 5.3
01401 30 6.8
18171 29 7.6
>07678
Length = 958
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 126/192 (65%), Gaps = 1/192 (0%)
Frame = +1
Query: 183 DAVTRFQEKLRSRGATGILGIARQFKIFDDDNSRTLDIQEFTKAVKDFRVELSEQE-IQD 241
D V + + +RGA GI G+AR+FKI DDD +R+LD +EF K + +F + E + IQ+
Sbjct: 265 DPVEKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQE 444
Query: 242 VFDYFDRNRDNVINYDEFLLGIRGPMSQSRRKLVQQAFAILDKDGSGIVDINDIKGTYNA 301
+F FD++ I++DEFL+ +R PMSQ R+ L+Q+AF LDK G G+V + D+KG YN
Sbjct: 445 MFTCFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYNV 624
Query: 302 KFHPDVRSGKRTEESVLLEFISTFETYVGFRGIRDNQITPQEFEDYYTFISASIDRDDYF 361
HP +G+ TEE +L F+ +F++ +D +IT +EF +YY +SAS+D D YF
Sbjct: 625 TKHPKYLNGEWTEERILRIFLDSFDS----PNDKDGKITKEEFFNYYVGVSASVDNDAYF 792
Query: 362 ELMMNNAWRMNE 373
LMM AWR+++
Sbjct: 793 SLMMKQAWRLDQ 828
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 118/191 (61%), Gaps = 1/191 (0%)
Frame = +1
Query: 822 QTFRKKLTSRGTRGILSLGRLYRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQ-LFK 880
+ R +RG GI L R ++I+DDDGNRS++F EF K + + E V Q +F
Sbjct: 274 EKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEMFT 453
Query: 881 LFDRDGSGSIDYDEFIRAVRGSMNKFRLDLVLAVFAKLDKNRNGVIEVDDILGVYDASKH 940
FD+D SG+ID+DEF+ +R M++ R DL+ F KLDK +GV+ V+D+ GVY+ +KH
Sbjct: 454 CFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYNVTKH 633
Query: 941 PDVRNRKKTEEEVLGDFLDTFEQHHAIQTANNKGRDKSVTVDEFVEYYNNVSASIDDDQY 1000
P N + TEE +L FLD+F+ + N+K D +T +EF YY VSAS+D+D Y
Sbjct: 634 PKYLNGEWTEERILRIFLDSFD------SPNDK--DGKITKEEFFNYYVGVSASVDNDAY 789
Query: 1001 FEHMIRSGWKI 1011
F M++ W++
Sbjct: 790 FSLMMKQAWRL 822
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 123/209 (58%), Gaps = 1/209 (0%)
Frame = +1
Query: 469 NYNNQRPQQSVTFDVRDLMTKVRNKLKTRGTSGLLGIQRQFRIMDDNFDKCISYPEFRKA 528
N Q Q D + K+R RG +G+ G+ R+F+IMDD+ ++ + + EF+K
Sbjct: 217 NREMQMKCQKALAVATDPVEKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKG 396
Query: 529 MNDYKMN-LTDEEMQALFQYIDMNGNGVIEIDELVRNLQGEMNDFRRGLVDQAFNKIDKN 587
+ ++ + + +Q +F D + +G I+ DE + L+ M+ R+ L+ +AF K+DK
Sbjct: 397 ITEFGLTQFEGDVIQEMFTCFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKT 576
Query: 588 KDGTLTVNDIKGVYSAKNHPDVRSGKKTEDEVLGEFLETFELHHHLKVGMRDQKVSREEF 647
DG +TV D+KGVY+ HP +G+ TE+ +L FL++F+ + +D K+++EEF
Sbjct: 577 GDGVVTVEDLKGVYNVTKHPKYLNGEWTEERILRIFLDSFDSPND-----KDGKITKEEF 741
Query: 648 HEYYNNVSANIDNDQYFELMIVNAYRLYQ 676
YY VSA++DND YF LM+ A+RL Q
Sbjct: 742 FNYYVGVSASVDNDAYFSLMMKQAWRLDQ 828
>00167
Length = 2176
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Frame = +3
Query: 822 QTFRKKLTSRGTRGILSLGRLYRIIDDDGNRSINFNEFSKVCKDLRVG-LNEQQVAQLFK 880
+ F+ +G I ++GR +RI+DD+ +R ++ +EF C++ R+ + +++ ++F+
Sbjct: 684 ERFKCYALQQGCGAIKTIGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVFR 863
Query: 881 LFDRDGSGSIDYDEFIRAVRGSMNKFRLDLVLAVFAKLDKNRNGVIEVDDILGVYDASKH 940
FD+DG+G++D++EF+ A+R MN+FR LV FAK+DK +G+I DD++G YD H
Sbjct: 864 RFDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYDVRSH 1043
Query: 941 PDVRNRKKTEEEVLGDFLDTFEQHHAIQTANNKGRDKSVTVDEFVEYYNNVSASIDDDQY 1000
P +N + T+++V +FLD F + N+ G +T+ E+++YY+ VSASID+D Y
Sbjct: 1044 PRYQNGELTKKQVYQEFLDNF-----VVGDNDDG---VITMAEWIDYYSGVSASIDEDVY 1199
Query: 1001 FEHMIRSGWKI 1011
F ++ + W +
Sbjct: 1200 FGLVMYNSWGV 1232
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 116/186 (62%), Gaps = 1/186 (0%)
Frame = +3
Query: 185 VTRFQEKLRSRGATGILGIARQFKIFDDDNSRTLDIQEFTKAVKDFRV-ELSEQEIQDVF 243
V RF+ +G I I R+F+I DD+ R L + EF ++ R+ +++ +E+ +VF
Sbjct: 681 VERFKCYALQQGCGAIKTIGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVF 860
Query: 244 DYFDRNRDNVINYDEFLLGIRGPMSQSRRKLVQQAFAILDKDGSGIVDINDIKGTYNAKF 303
FD++ ++++EFLL +R M++ RRKLV++AFA +DK G GI+ +D+ GTY+ +
Sbjct: 861 RRFDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYDVRS 1040
Query: 304 HPDVRSGKRTEESVLLEFISTFETYVGFRGIRDNQITPQEFEDYYTFISASIDRDDYFEL 363
HP ++G+ T++ V EF+ F VG D IT E+ DYY+ +SASID D YF L
Sbjct: 1041HPRYQNGELTKKQVYQEFLDNF--VVGDND--DGVITMAEWIDYYSGVSASIDEDVYFGL 1208
Query: 364 MMNNAW 369
+M N+W
Sbjct: 1209VMYNSW 1226
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Frame = +3
Query: 497 RGTSGLLGIQRQFRIMDDNFDKCISYPEFRKAMNDYKM-NLTDEEMQALFQYIDMNGNGV 555
+G + I R+FRIMDDN D+ +S EF + ++ +T EE+ +F+ D +G G
Sbjct: 711 QGCGAIKTIGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVFRRFDKDGTGT 890
Query: 556 IEIDELVRNLQGEMNDFRRGLVDQAFNKIDKNKDGTLTVNDIKGVYSAKNHPDVRSGKKT 615
++ +E + L+ +MN+FRR LV +AF K+DK DG +T +D+ G Y ++HP ++G+ T
Sbjct: 891 LDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYDVRSHPRYQNGELT 1070
Query: 616 EDEVLGEFLETFELHHHLKVGMRDQKVSREEFHEYYNNVSANIDNDQYFELMIVNAY 672
+ +V EFL+ F + + D ++ E+ +YY+ VSA+ID D YF L++ N++
Sbjct: 1071KKQVYQEFLDNFVVGDN-----DDGVITMAEWIDYYSGVSASIDEDVYFGLVMYNSW 1226
>26849
Length = 649
Score = 78.6 bits (192), Expect(2) = 1e-30, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 62/101 (61%)
Frame = +3
Query: 263 IRGPMSQSRRKLVQQAFAILDKDGSGIVDINDIKGTYNAKFHPDVRSGKRTEESVLLEFI 322
+R PMS+SR ++ +AF LD +G G + I D K Y+ + HP +SG+ +++ ++LEF+
Sbjct: 354 LRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEFL 533
Query: 323 STFETYVGFRGIRDNQITPQEFEDYYTFISASIDRDDYFEL 363
F+ V D + +EFE+ Y ISASID D YF+L
Sbjct: 534 KNFQAGVS---DPDGVVNKEEFENXYASISASIDNDTYFDL 647
Score = 74.3 bits (181), Expect(2) = 1e-30, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 56/83 (67%)
Frame = +2
Query: 181 QQDAVTRFQEKLRSRGATGILGIARQFKIFDDDNSRTLDIQEFTKAVKDFRVELSEQEIQ 240
++D++ + + + SRG TGILG+AR F++ D D S+ L ++EF K + D ++++E +I+
Sbjct: 107 EKDSIYKLRLQCLSRGPTGILGLARAFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIE 286
Query: 241 DVFDYFDRNRDNVINYDEFLLGI 263
D+F FD + + IN EFLL +
Sbjct: 287 DMFYRFDNDGNGTINMTEFLLKV 355
Score = 83.2 bits (204), Expect(2) = 2e-27, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 67/102 (65%)
Frame = +3
Query: 565 LQGEMNDFRRGLVDQAFNKIDKNKDGTLTVNDIKGVYSAKNHPDVRSGKKTEDEVLGEFL 624
L+ M++ R ++ +AF+K+D N DG +T+ D K YS ++HP +SG+ ++DE++ EFL
Sbjct: 354 LRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEFL 533
Query: 625 ETFELHHHLKVGMRDQKVSREEFHEYYNNVSANIDNDQYFEL 666
+ F+ V D V++EEF Y ++SA+IDND YF+L
Sbjct: 534 KNFQ----AGVSDPDGVVNKEEFENXYASISASIDNDTYFDL 647
Score = 58.2 bits (139), Expect(2) = 2e-27, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 50/79 (63%)
Frame = +2
Query: 484 RDLMTKVRNKLKTRGTSGLLGIQRQFRIMDDNFDKCISYPEFRKAMNDYKMNLTDEEMQA 543
+D + K+R + +RG +G+LG+ R FR+MD + K +S EF+K + D +++ + +++
Sbjct: 110 KDSIYKLRLQCLSRGPTGILGLARAFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIED 289
Query: 544 LFQYIDMNGNGVIEIDELV 562
+F D +GNG I + E +
Sbjct: 290 MFYRFDNDGNGTINMTEFL 346
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Frame = +2
Query: 824 FRKKLTSRGTRGILSLGRLYRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFD 883
R + SRG GIL L R +R++D DG++ ++ EF K D+ + +NE + +F FD
Sbjct: 128 LRLQCLSRGPTGILGLARAFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIEDMFYRFD 307
Query: 884 RDGSGSIDYDEFIRAVRGSMNKFRL 908
DG+G+I+ EF+ V + + L
Sbjct: 308 NDGNGTINMTEFLLKVASTNERIAL 382
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%)
Frame = +3
Query: 899 VRGSMNKFRLDLVLAVFAKLDKNRNGVIEVDDILGVYDASKHPDVRNRKKTEEEVLGDFL 958
+R M++ RL+++ F KLD N +G I + D Y HP ++ + +++E++ +FL
Sbjct: 354 LRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEFL 533
Query: 959 DTFEQHHAIQTANNKGRDKSVTVDEFVEYYNNVSASIDDDQYFE 1002
F+ A D V +EF Y ++SASID+D YF+
Sbjct: 534 KNFQ-------AGVSDPDGVVNKEEFENXYASISASIDNDTYFD 644
>12671
Length = 807
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%)
Frame = -2
Query: 840 GRLYRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAV 899
GR YR +D DG + ++ + V L + + Q+F++ D DG +DY F+R V
Sbjct: 806 GRHYRQLDKDGTGILLQHDLERGLLRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTV 627
Query: 900 RGSMNKFRLDLVLAVFAKLDKNRNGVIEVDDILGVYDASKHPDVRNRKKTEEEVLGDFLD 959
G MN+ R LV F+K+D +R G I + DI ++A+ + + + L FLD
Sbjct: 626 LGQMNENRKGLVRKAFSKVDTHRQGSIHLSDIKKFFNANCPYRPSSDADSTKSALQCFLD 447
Query: 960 TFEQHHAIQTANNKGRDKSVTVDEFVEYYNNVSASIDDDQYFEHMIRSGWKI 1011
A++ + + + V+ EF EYY +S + +DQ F +++R+ W I
Sbjct: 446 ------AVRCS---AKQEEVSFIEFEEYYEGLSVGLQEDQDFANILRNTWNI 318
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 88/168 (52%)
Frame = -2
Query: 507 RQFRIMDDNFDKCISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELVRNLQ 566
R +R +D + + + + + + ++L E ++ +F+ +D +G ++ +R +
Sbjct: 803 RHYRQLDKDGTGILLQHDLERGLLRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTVL 624
Query: 567 GEMNDFRRGLVDQAFNKIDKNKDGTLTVNDIKGVYSAKNHPDVRSGKKTEDEVLGEFLET 626
G+MN+ R+GLV +AF+K+D ++ G++ ++DIK ++A S + L FL+
Sbjct: 623 GQMNENRKGLVRKAFSKVDTHRQGSIHLSDIKKFFNANCPYRPSSDADSTKSALQCFLDA 444
Query: 627 FELHHHLKVGMRDQKVSREEFHEYYNNVSANIDNDQYFELMIVNAYRL 674
++ + ++VS EF EYY +S + DQ F ++ N + +
Sbjct: 443 ------VRCSAKQEEVSFIEFEEYYEGLSVGLQEDQDFANILRNTWNI 318
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 82/168 (48%)
Frame = -2
Query: 204 ARQFKIFDDDNSRTLDIQEFTKAVKDFRVELSEQEIQDVFDYFDRNRDNVINYDEFLLGI 263
R ++ D D + L + + + F V+L + ++ VF+ D + + ++Y F+ +
Sbjct: 806 GRHYRQLDKDGTGILLQHDLERGLLRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTV 627
Query: 264 RGPMSQSRRKLVQQAFAILDKDGSGIVDINDIKGTYNAKFHPDVRSGKRTEESVLLEFIS 323
G M+++R+ LV++AF+ +D G + ++DIK +NA S + +S L F+
Sbjct: 626 LGQMNENRKGLVRKAFSKVDTHRQGSIHLSDIKKFFNANCPYRPSSDADSTKSALQCFLD 447
Query: 324 TFETYVGFRGIRDNQITPQEFEDYYTFISASIDRDDYFELMMNNAWRM 371
+ +++ EFE+YY +S + D F ++ N W +
Sbjct: 446 AVRC-----SAKQEEVSFIEFEEYYEGLSVGLQEDQDFANILRNTWNI 318
>17977
Length = 445
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 175 YFQGHTQQDA-VTRFQEKLRSRGATGILGIARQFKIFDDDNSRTLDIQEFTKAVKDFRVE 233
Y +G QQ V +++L+ + R F+ +D D +DI + +A + F V
Sbjct: 138 YLRGRDQQRGLVAAMRQQLKKFNYHSFPDLIRAFRFYDKDGKGKIDIDDLREACRKFDVP 317
Query: 234 LSEQEIQDVFDYFDRNRDNVINYDEF 259
+ ++ VFDY D NRD I+Y EF
Sbjct: 318 IDVWLLEQVFDYCDENRDGQIDYLEF 395
>22063
Length = 688
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +3
Query: 231 RVELSE---QEIQDVFDYFDRNRDNVINYDEFLLGIRGPMSQSRRKLVQQAFAILDKDGS 287
+ EL+E QEI++ FD FD + I+ E + +R + +++ +++ A +DK+G+
Sbjct: 144 KCELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGT 323
Query: 288 GIVDIND 294
G +D ND
Sbjct: 324 GTIDFND 344
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +3
Query: 873 QQVAQLFKLFDRDGSGSIDYDEFIRAVRGSMNKFRLDLVLAVFAKLDKNRNGVIEVDDIL 932
Q++ + F LFD DGSG+ID E A+R + + + + + A++DK G I+ +D L
Sbjct: 171 QEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFL 350
Query: 933 GVYDASKHPDVRNRKKTEEEVLGDF 957
+ + K +EE+L F
Sbjct: 351 TIMTQK-----MSEKDAKEEILKAF 410
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +3
Query: 203 IARQFKIFDDDNSRTLDIQEFTKAVKDFRVELSEQEIQDVFDYFDRNRDNVINYDEFLLG 262
I F +FD D S T+D +E A++ E ++EI+ + D+ I++++FL
Sbjct: 177 IREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTI 356
Query: 263 IRGPMSQS-RRKLVQQAFAILDKDGSG 288
+ MS+ ++ + +AF + D D +G
Sbjct: 357 MTQKMSEKDAKEEILKAFRLFDDDETG 437
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 854 INFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVR 900
I+F +V K+L L ++++ ++ DRDG G I+ +EF+R ++
Sbjct: 442 ISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMK 582
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 843 YRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRGS 902
+ + D DG+ +I+ E + L ++++ ++ D++G+G+ID+++F+ +
Sbjct: 189 FDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTIMTQK 368
Query: 903 MN-KFRLDLVLAVFAKLDKNRNG 924
M+ K + +L F D + G
Sbjct: 369 MSEKDAKEEILKAFRLFDDDETG 437
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 520 ISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELVR 563
IS+ ++ + NLTDEE+Q + D +G+G I +E +R
Sbjct: 442 ISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLR 573
>15966
Length = 362
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +2
Query: 843 YRIIDDDGNRSINFNEFSKVCKDL-RVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRG 901
+ ++ G++ I F EF CK L ++ + Q++A+LFK D+ G G +D DE +
Sbjct: 50 FFVVPSCGDKRITFEEF---CKGLDQIVMFVQKLAELFKAKDKSGDGYLDRDELKALLDE 220
Query: 902 SMNKFRLDLVLAVFAKLDKNRNGVIEVDDILGVYDASKHPDVRNR 946
S KF D V A+ DKN + I ++ + KH NR
Sbjct: 221 SGQKFTADDVSAILKSADKNNDNKICFEEFVDACT*KKHVCT*NR 355
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Frame = +2
Query: 517 DKCISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELVRNLQGEMNDFRRGL 576
DK I++ EF K ++ M + +++ LF+ D +G+G ++ DEL L F
Sbjct: 74 DKRITFEEFCKGLDQIVMFV--QKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADD 247
Query: 577 VDQAFNKIDKNKDGTLTVNDIKGVYSAKNH 606
V DKN D + + + K H
Sbjct: 248 VSAILKSADKNNDNKICFEEFVDACT*KKH 337
>08108
Length = 818
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 53/123 (43%)
Frame = +2
Query: 506 QRQFRIMDDNFDKCISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELVRNL 565
Q F + D + IS E +A+ ++TD++ L + D + NG I+ DE + +
Sbjct: 134 QTAFAVFDTDGSGSISAGELGEALRAQGADITDDQTAELIKKYDSDSNGDIDTDEFRKLV 313
Query: 566 QGEMNDFRRGLVDQAFNKIDKNKDGTLTVNDIKGVYSAKNHPDVRSGKKTEDEVLGEFLE 625
+GE + R F +D + DG +T ++I GKKT G+F
Sbjct: 314 EGESDVARLAQSALMFKSLDADGDGQITASEITEA----------QGKKTIGATDGQFAA 463
Query: 626 TFE 628
E
Sbjct: 464 MVE 472
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 870 LNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRGSMNKFRLDLVLAVFAKLDKNRNGVIEVD 929
L + + F +FD DGSGSI E A+R D + K D + NG I+ D
Sbjct: 116 LTDAECQTAFAVFDTDGSGSISAGELGEALRAQGADITDDQTAELIKKYDSDSNGDIDTD 295
Query: 930 D 930
+
Sbjct: 296 E 298
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 536 LTDEEMQALFQYIDMNGNGVIEIDELVRNLQGEMNDFRRGLVDQAFNKIDKNKDGTLTVN 595
LTD E Q F D +G+G I EL L+ + D + K D + +G + +
Sbjct: 116 LTDAECQTAFAVFDTDGSGSISAGELGEALRAQGADITDDQTAELIKKYDSDSNGDIDTD 295
Query: 596 DIK 598
+ +
Sbjct: 296 EFR 304
>14945
Length = 1337
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%)
Frame = +1
Query: 233 ELSEQEIQDVFDYFDRNRDNVINYDEFLLGIRGPMSQSRRKLVQQAFAILDKDGSGIVDI 292
E +QEI++ FD FD + I+ E + +R + +++ +++ A +DK+G+G +D
Sbjct: 100 EEQKQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDF 279
Query: 293 NDIKGTYNAKFHPDVRSGKRTEESVLLEF 321
ND K S K +E +L F
Sbjct: 280 NDFLTIMTQKM-----SEKDAKEEILKAF 351
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Frame = +1
Query: 872 EQQVAQLFKLFDRDGSGSIDYDEFIRAVRGSMNKFRLDLVLAVFAKLDKNRNGVIEVDDI 931
+Q++ + F LFD DGSG+ID E A+R + + + + + A++DK G I+ +D
Sbjct: 109 KQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDF 288
Query: 932 LGVYDASKHPDVRNRKKTEEEVLGDF 957
L + + K +EE+L F
Sbjct: 289 LTIMTQK-----MSEKDAKEEILKAF 351
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 203 IARQFKIFDDDNSRTLDIQEFTKAVKDFRVELSEQEIQDVFDYFDRNRDNVINYDEFLLG 262
I F +FD D S T+D +E A++ E ++EI+ + D+ I++++FL
Sbjct: 118 IREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTI 297
Query: 263 IRGPMSQS-RRKLVQQAFAILDKDGSG 288
+ MS+ ++ + +AF + D D +G
Sbjct: 298 MTQKMSEKDAKEEILKAFRLFDDDETG 378
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 854 INFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVR 900
I+F +V K+L L ++++ ++ DRDG G I+ +EF+R ++
Sbjct: 383 ISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMK 523
Score = 33.1 bits (74), Expect = 0.61, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 843 YRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRGS 902
+ + D DG+ +I+ E + L ++++ ++ D++G+G+ID+++F+ +
Sbjct: 130 FDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTIMTQK 309
Query: 903 MN-KFRLDLVLAVFAKLDKNRNG 924
M+ K + +L F D + G
Sbjct: 310 MSEKDAKEEILKAFRLFDDDETG 378
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 520 ISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELVR 563
IS+ ++ + NLTDEE+Q + D +G+G I +E +R
Sbjct: 383 ISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLR 514
>14594
Length = 1014
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 207 FKIFDDDNSRTLDIQEFTKAVKDFRVELSEQEIQDVFDYFDRNRDNVINYDEFLLGIRGP 266
F +FD D T+ E ++ +E E+QD+ + D + + I+++EFL +
Sbjct: 459 FSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTIDFEEFLHMMARK 638
Query: 267 MSQS-RRKLVQQAFAILDKDGSGIVDINDIK 296
M + + +++AF + DKDG+G + +++
Sbjct: 639 MKDTDCEEELREAFRVFDKDGNGYISAAELR 731
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 843 YRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRGS 902
+ + D DG+ +I +E V + L E ++ + D DG+G+ID++EF+ +
Sbjct: 459 FSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTIDFEEFLHMMARK 638
Query: 903 MNKFRLDLVL-AVFAKLDKNRNGVI 926
M + L F DK+ NG I
Sbjct: 639 MKDTDCEEELREAFRVFDKDGNGYI 713
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 505 IQRQFRIMDDNFDKCISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELV 562
++ FR+ D + + IS E R M + LTDEE+ + + D++G+G++ +E V
Sbjct: 666 LREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADLDGDGMVNYEEFV 839
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 2/212 (0%)
Frame = +3
Query: 51 LTQKSTSHSSDEAV--LLKSFKYFDLDNSGNVDQSEFIKVVEKIGIPIFNKQVIISKIWN 108
++Q+ +DE V ++F FD D G + SE V+ +G N
Sbjct: 399 MSQEHIVTLTDEQVAEFKEAFSLFDKDGDGTITTSELGTVMRSLG-------------QN 539
Query: 109 NQKNSFISSKQLQKQLNCIFKKQDFIDLFNYYDVNGDGRLDYKEFSAMIFGYNSPKKPSS 168
+N +LQ D+ N D +G+G +D++EF M+
Sbjct: 540 PTEN------ELQ-------------DMINEVDADGNGTIDFEEFLHMM--------ARK 638
Query: 169 MKRANDYFQGHTQQDAVTRFQEKLRSRGATGILGIARQFKIFDDDNSRTLDIQEFTKAVK 228
MK T +E+LR F++FD D + + E +
Sbjct: 639 MKD--------------TDCEEELR-----------EAFRVFDKDGNGYISAAELRHVMT 743
Query: 229 DFRVELSEQEIQDVFDYFDRNRDNVINYDEFL 260
+ +L+++E+ ++ D + D ++NY+EF+
Sbjct: 744 NLGEKLTDEEVDEMIKEADLDGDGMVNYEEFV 839
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Frame = +3
Query: 73 DLDNSGNVDQSEFIKVVEKIGIPIFNKQVI--ISKIWNNQKNSFISSKQLQKQLNCIFKK 130
D D +G +D EF+ ++ + ++ + ++++ N +IS+ +L+ + + +K
Sbjct: 579 DADGNGTIDFEEFLHMMARKMKDTDCEEELREAFRVFDKDGNGYISAAELRHVMTNLGEK 758
Query: 131 ---QDFIDLFNYYDVNGDGRLDYKEFSAMIFGYNSPKKPSSMKR 171
++ ++ D++GDG ++Y+EF M+ + K PS R
Sbjct: 759 LTDEEVDEMIKEADLDGDGMVNYEEFVTMM----TAK*PSEGTR 878
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 868 VGLNEQQVAQL---FKLFDRDGSGSIDYDEFIRAVRGSMNKFRLDLVLAVFAKLDKNRNG 924
V L ++QVA+ F LFD+DG G+I E +R + + + ++D + NG
Sbjct: 417 VTLTDEQVAEFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNG 596
Query: 925 VIEVDDILGVYDASKHPDVRNRKKTEEE 952
I+ ++ L H R K T+ E
Sbjct: 597 TIDFEEFL-------HMMARKMKDTDCE 659
>05237
Length = 472
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +3
Query: 505 IQRQFRIMDDNFDKCISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELVRN 564
++ FR+ D + + IS E R M + LTDEE+ + + D++G+G + +E V+
Sbjct: 33 LREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKM 212
Query: 565 L 565
+
Sbjct: 213 M 215
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Frame = +3
Query: 105 KIWNNQKNSFISSKQLQKQLNCIFKK---QDFIDLFNYYDVNGDGRLDYKEFSAMI 157
++++ N FIS+ +L+ + + +K ++ ++ D++GDG+++Y+EF M+
Sbjct: 48 RVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMM 215
>26610
Length = 455
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Frame = +3
Query: 504 GIQRQFRIMDDNFDKCISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEID---E 560
+ F + D + D I+ E A+ +TD +++ L + +G ++++ +
Sbjct: 45 AVSEAFELFDTDNDGKIAASEVGTAIRSLGHVVTDSDLRRLLSKAGIEPHGKVDMNRFRQ 224
Query: 561 LVRNLQGEMNDFRRGLVDQAFNKIDKNKDGTLTVNDIKGVYSAKNHPDVRSGKKTEDEVL 620
LV+ LQG +N ++ +D+AFN IDK G + +++ H G + DE
Sbjct: 225 LVQPLQG-VNYTKQ--LDEAFNTIDKEGSGFVMATELR-------HLLTHMGDRITDEEF 374
Query: 621 GEFLETFEL 629
LE E+
Sbjct: 375 NALLEELEV 401
>28765
Length = 801
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Frame = +3
Query: 236 EQEIQDVFDYFDRNRDNVINYDEFLLGIRGPMSQSRRKLVQQAFAILDKDGSGIVDIN-- 293
E+++++V ++DN+++ +E LL ++ +Q+ +LD+D GI++IN
Sbjct: 330 EKKVEEVMQRISESKDNIVSINEMLLAMKRLQKVPDDTKLQRIVEVLDEDQDGIININLA 509
Query: 294 ----DIKGTYNAKFHP 305
++ G N K +
Sbjct: 510 LKVLEVLGQENVKLNK 557
>17484
Length = 471
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -1
Query: 847 DDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSID 891
D DGN I NEF V + L L+E+++ ++ + D D SG+I+
Sbjct: 462 DQDGNGKITRNEFRSVVRMLGHSLSEKELEEMMQAADTDASGAIE 328
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -3
Query: 207 FKIFDDDNSRTLDIQEFTKAVKDFRVELSEQEIQDVFDYFDRNRDNVINYDEFLLGIRG 265
F+ FD + + I E +A+ +LS+ +++ + D++ D +NY+EF I G
Sbjct: 253 FRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRDVDKDGDGFVNYEEFTKFIAG 77
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = -3
Query: 843 YRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRG 901
+R D +G+ I+ +E + + L++ V + + D+DG G ++Y+EF + + G
Sbjct: 253 FRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRDVDKDGDGFVNYEEFTKFIAG 77
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 538 DEEMQALFQYIDMNGNGVIEIDELVRNLQGEMNDFRRGLVDQAFNKIDKNKDG 590
D+EM+ F+ D NG+GVI I EL + + V+ +DK+ DG
Sbjct: 274 DKEMRDAFRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRDVDKDGDG 116
>26019
Length = 1561
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 839 LGRLYRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQ-LFKLFDRDGSGSIDYDEFIR 897
LG+ +R +D D + S++ +EF + + L + + Q + +FD DG+G +D+ EFI
Sbjct: 104 LGKRFRKLDLDNSGSLSIDEFMSLPE-----LQQNPLVQRVIDIFDTDGNGEVDFKEFIE 268
Query: 898 AV 899
+
Sbjct: 269 GI 274
>02929
Length = 1353
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Frame = +2
Query: 874 QVAQLFKLFDRDGSGSIDYDEFIRAV---RGSMNKFRLDLVLAVFAKLDKNRNGVIEVDD 930
+V F+ D+DG G + +EF+ + R N+ L+ V +F D+ + G+IE D
Sbjct: 179 RVTDFFRRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIF---DREKRGLIEYKD 349
Query: 931 ILGVYDASKHPD---VRNRKKTEEEVLGDFLD 959
+ DA K PD +R +++EV+ D +D
Sbjct: 350 FV---DALK-PDKFRTSSRAMSDDEVIQDSID 433
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +2
Query: 842 LYRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRG 901
+R D DG+ + EF R N ++ +F +FDR+ G I+Y +F+ A++
Sbjct: 191 FFRRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIFDREKRGLIEYKDFVDALK- 367
Query: 902 SMNKFR 907
+KFR
Sbjct: 368 -PDKFR 382
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 207 FKIFDDDNSRTLDIQEFTKAVKDFRVELSEQEIQDVFDYFDRNRDNVINYDEFLLGIR 264
F+ D D L +EF + R + E+ VFD FDR + +I Y +F+ ++
Sbjct: 194 FRRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIFDREKRGLIEYKDFVDALK 367
>03732
Length = 1114
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Frame = -1
Query: 842 LYRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRG 901
+R D D + SI+ NE L+++ L K FDR G G++ +D+FI+
Sbjct: 886 CFRSYDRDNSGSIDRNELKNALTGFGYRLSDRFFDVLVKKFDRQGKGTVAFDDFIQCC-- 713
Query: 902 SMNKFRLDLVLAVFAKLDKNRNGVIEV 928
L + F D++++G I++
Sbjct: 712 ----VVLQTLTTSFRTHDQDQDGWIQI 644
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 207 FKIFDDDNSRTLDIQEFTKAVKDFRVELSEQEIQDVFDYFDRNRDNVINYDEFL 260
F+ +D DNS ++D E A+ F LS++ + FDR + +D+F+
Sbjct: 883 FRSYDRDNSGSIDRNELKNALTGFGYRLSDRFFDVLVKKFDRQGKGTVAFDDFI 722
>01491
Length = 1707
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 843 YRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEF 895
+R++D I + + K L L E ++ + D DGSG++DY+EF
Sbjct: 364 FRVLDKGNKGVIPVEDLRWLLKSLGDDLTEDEIEDMIVETDTDGSGTVDYEEF 522
>04067
Length = 1920
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 848 DDGNRS-INFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIRAVRG 901
D GN+ I + + K L L E ++ + D DGSG++DY+EF + + G
Sbjct: 1914 DKGNKGVIPVEDLRWLLKSLGDDLTEDEIEDMILETDTDGSGTVDYEEFYKLMMG 1750
>01019
Length = 1705
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 504 GIQRQFRIM--DDNFDKCISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDEL 561
GI ++ ++ D + + IS E R M + LTDEE+ + + D++G+G + +E
Sbjct: 16 GINAEWPLLVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 195
Query: 562 V 562
V
Sbjct: 196 V 198
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 106 IWNNQKNSFISSKQLQKQLNCIFKK---QDFIDLFNYYDVNGDGRLDYKEFSAMI 157
+++ N FIS+ +L+ + + +K ++ ++ D++GDG+++Y+EF M+
Sbjct: 43 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 207
>14366
Length = 499
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = -3
Query: 505 IQRQFRIMDDNFDKCISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELVRN 564
++ FRI D + I+ E R + L+DEE+ + + D++G+G + ++ V+
Sbjct: 245 LREAFRIFDKEGNGMINAAELRHVLTHLGEKLSDEEVDEMIREADISGDGQVSYNDFVKV 66
Query: 565 LQ 566
++
Sbjct: 65 ME 60
>27864
Length = 343
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = +1
Query: 203 IARQFKIFDDDNSRTLDIQEFTKAVKD-FRVELSEQEIQDVFDYFDRNRDNVINYDEFLL 261
+A F+ D D S + + E +A+ + + + ++ + FDR+ IN+ EF
Sbjct: 19 LAGIFQRIDKDRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEF-- 192
Query: 262 GIRGPMSQSRRKLV---QQAFAILDKDGSGIVDINDIK 296
Q+ K V Q F D+D SG +D N++K
Sbjct: 193 -------QALWKYVTDWQNCFRSYDRDNSGSIDRNELK 285
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 845 IIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEF 895
+ D D + +INF EF + K + N F+ +DRD SGSID +E
Sbjct: 148 MFDRDNSGTINFQEFQALWKYVTDWQN------CFRSYDRDNSGSIDRNEL 282
>36530
Length = 1010
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Frame = +1
Query: 504 GIQRQFRIMDDNFDKCISY-------PEFRKAMNDYKMNLTDEE------MQALFQYIDM 550
G ++ ++ + KC+ Y P R Y+M L E + + +
Sbjct: 133 GETARYPLITRTYIKCVKYWLKLLKLPMSRLC*QSYEMLLQQHESGHINWASKIHKLLTE 312
Query: 551 NGNGVIEIDELVRNLQGEMNDFRRGLVD---QAFNKIDKNKDGTLTVNDIKGVYSAKNHP 607
NG GV+ + + V N +G +N+F+ L+ Q ++ + D N K V+ A+N
Sbjct: 313 NGFGVVWLSQGVGNEKGFINEFKDRLISCNAQTWHSNLEGNDKYAWYNSFKSVFQAENIY 492
Query: 608 DVRSGKKTEDEVLGEFLE-----TFELHHHLKV 635
++ K TE G LE + HL+V
Sbjct: 493 HMQQIKGTETISQGLGLE*EVC*ILNIGFHLRV 591
>38338
Length = 463
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 836 ILSLGRLYRIIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDY 892
I + + D DG+ +I E V + L E ++ + D DG+G+ID+
Sbjct: 171 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 1
>39823
Length = 655
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Frame = +3
Query: 242 VFDYFDRNRDNVINYDEFL----LGIRGP--------MSQSRRKLVQQAFAILDKDGSGI 289
VFD FD++RDN + ++E+ L + P MS+ ++V+ F + D+D +
Sbjct: 72 VFDEFDKDRDNQVTWEEYRDARSLTSKDPLARGQGRRMSEMTERVVRLEFQMADQDEDQV 251
Query: 290 VD 291
+D
Sbjct: 252 LD 257
>19912
Length = 865
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +2
Query: 509 FRIMD--DNFDK----CISYPEFRKAMNDYKMNLTDEEMQALFQYIDMNGNGVIEIDELV 562
R++D + FDK I+ +FR+ + + + L +E+ L +D +G+G I ELV
Sbjct: 668 LRLVDFFNKFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLDELDRDGDGEINYSELV 847
>01401
Length = 1454
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 848 DDGNRSINFNEFSKVCKDLRVGLNEQQ--VAQLFKLFDRDGSGSIDYDEFIRAVR 900
D + I++ EF +V +G+ E +A +F+ D+D SGS+ +E + AV+
Sbjct: 196 DSKDEVIDYEEFLRV-----MGMQEAATVMAHVFRQLDKDNSGSLTREEIMAAVQ 345
>18171
Length = 1131
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 845 IIDDDGNRSINFNEFSKVCKDLRVGLNEQQVAQLFKLFDRDGSGSIDYDEFIR 897
++D D I+ V L L ++V +L K D++ +G +DY EFI+
Sbjct: 189 LLDKDQTGVISTALLRHVLTTLGDQLTSEEVEELIKEADKEETGQVDYKEFIK 347
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00486480__3680.m00074enolase_family_protein
(441 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09637 165 4e-41
26158 114 8e-26
33905 55 5e-08
15165 29 4.0
>09637
Length = 1627
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 90/111 (81%)
Frame = +1
Query: 327 VKIVGDDLLVTNPLRAEKAIQEKACNYLLLKVNQIGTVTEAIQTYQIVSKANFGTMVSHR 386
+IVGDDLLVTNP R + I++KACN LLLKVNQIG+VTEAI ++ K +G MVSHR
Sbjct: 22 CQIVGDDLLVTNPKRVQTGIEKKACNALLLKVNQIGSVTEAIDACKMSQKEGWGVMVSHR 201
Query: 387 SGETEDTFIADLVVGIGAATIKTGAPCRSERLAKYNQLIRIEEELGQNSTY 437
SGETEDTFIADLVVG+ IKTGAPCRSERLAKYNQL+RIEEELG + Y
Sbjct: 202 SGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLLRIEEELGGKAKY 354
>26158
Length = 431
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 74/103 (71%), Gaps = 2/103 (1%)
Frame = -2
Query: 1 MATIKDIKAREILDSRGNPTVEVDLTVDNGQVFRAAVPSGASTGIYEACELRDGDNHRYL 60
M IK I AR+I DSRGNPTVEVDLT D G +FRAAVPSGASTGIYEA ELRDGD Y
Sbjct: 304 MPEIKKIHARQIFDSRGNPTVEVDLTTDKG-LFRAAVPSGASTGIYEAVELRDGDPKCYH 128
Query: 61 GKGVLKAVNNVNTIIKPHLI--GKNVTEQEQLDKLMVEQLDGT 101
KGVL AV+NVN I LI G V Q ++D+ ++ +LDGT
Sbjct: 127 KKGVLTAVSNVNDKIAQALIESGIPVQNQREVDEFLM-KLDGT 2
>33905
Length = 560
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = +2
Query: 387 SGETEDTFIADLVVGIGAATIKTGAPCRSERLAKYNQLIRIEEELGQNSTYG 438
+GE++D FIADL V + IK GAP R ER++K+N+L++IE EL +S
Sbjct: 299 AGESQDDFIADLAVAMNVRFIKIGAPNRGERISKFNRLLQIEAELEASSKLA 454
>15165
Length = 405
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 51 LRDGDNHRYLGKGVLKAVNNVNTIIKPHLI 80
LR G NHRY + + N+ TII +LI
Sbjct: 200 LRRGLNHRYASSQITRTYANIETIIPLYLI 111
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00442180__3681.m00046Coenzyme_A_transferase_family_protein
(502 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09880 138 5e-40
22634 138 5e-33
05888 28 9.3
>09880
Length = 893
Score = 138 bits (347), Expect(2) = 5e-40, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 96/134 (71%), Gaps = 2/134 (1%)
Frame = +3
Query: 369 FSSSLSFGIIRGDHLDMTMLGAMQVSRTCDIANWIIPGKLVKGMGGAMDLVSCR-SKVIV 427
FSS SF +IRG H+ +T+LGAMQVS+ D+ANW+IPGK+VKGMGGAMDLVS +KVI+
Sbjct: 129 FSSDESFAMIRGGHVSLTILGAMQVSQYGDLANWMIPGKMVKGMGGAMDLVSSYGTKVII 308
Query: 428 LMEHNNKHGEFKVVDQCTLPLTGKGVVNTLITEMAVFR-NWDGELVCEEIAEECTLEQVR 486
MEH K G+ K+++ C+LPLTGK V+ +ITE VF + D L E+AE +E +
Sbjct: 309 TMEHTAKGGKHKILEDCSLPLTGKNCVDMIITEKGVFEVDKDNGLTLVEMAEGENVEDIV 488
Query: 487 EASGYEFRVAENLK 500
E +G EF V+ +LK
Sbjct: 489 ETTGCEFSVSPDLK 530
Score = 45.1 bits (105), Expect(2) = 5e-40, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 27/31 (87%)
Frame = +2
Query: 328 IMLESELGVMGVGPYPKKGQEHADLINAGKE 358
+ L+SE G++G+GP+P+ G+E ADLINAGK+
Sbjct: 8 VHLQSENGILGLGPFPRPGEEDADLINAGKK 100
>22634
Length = 602
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 100/171 (58%)
Frame = +3
Query: 194 FAIVKAQKADRKGNLYYNRTAKNFNEDAVMGGKIAIAXXXXXXXXXXXXXXXIHTPGVFV 253
FA+VKA KAD GNL + +TA+NFN K+ IA +H P ++V
Sbjct: 3 FALVKAWKADTAGNLIFRKTAQNFNPPMXKAAKVTIAEVEEIVDVGEIRPEDVHVPHIYV 182
Query: 254 DRVFVGEKFEHRIEKPMFDTSDQPQKPKDKITHKERVRDRIVARAAKEVKSGMNLNLGIG 313
RV GEK+E RIE ++ D +KP D K R +I+ RAA E+ GM NLGIG
Sbjct: 183 QRVVKGEKYEKRIENLRYNMEDV-KKPTDANFVK---RQKIIRRAALELDDGMFANLGIG 350
Query: 314 MPTLLPQFLPKGINIMLESELGVMGVGPYPKKGQEHADLINAGKEPITLLP 364
+P L +L GI + L SE G++G+GPYP G+E +DLINAGKE +T LP
Sbjct: 351 LPMLASNYLKPGIKVHLHSENGILGLGPYPHPGEEDSDLINAGKESVTALP 503
>05888
Length = 490
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = -2
Query: 292 DRIVARAAKEVKSGMNLNLGIGMPTLLPQF-LPKGINIMLESELGVMGVGP-YPKKGQEH 349
D V R E + G + +G PT++ LP+G+ + E G + GP + G++
Sbjct: 300 DAEVKRRPSEGREGRDKKDHMGQPTVISMLGLPEGMKPVESEEGGTLQAGPGRSRDGRDR 121
Query: 350 ADLINAGKEPITL 362
DL G+E TL
Sbjct: 120 KDL-RPGEEDTTL 85
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00773610__3676.m00055enoyl-
CoA_hydratase/isomerase_family_protein
(277 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13881 160 7e-40
04595 128 4e-33
11398 66 1e-11
36681 61 6e-10
26426 51 1e-09
04023 53 1e-07
37516 46 2e-05
>13881
Length = 1594
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 135/248 (54%)
Frame = +3
Query: 28 DNKTVGVIYFNSPKDLNCXXXXXXXXXXXXITELNNSQDVKVIVILSKFPKAFCAGADIT 87
D V V+ N P+ N + +L+ V IV L+ +AF AGAD+
Sbjct: 129 DKHNVAVVRMNRPRTFNALSDALMADVTAALQQLDQDNSVGCIV-LTGSDRAFAAGADVP 305
Query: 88 RFTKLSVQTEMISNTFQVYDNVLFKTTKPIIAGVNGFCLGGGFEIALSADVIFCSDDAKF 147
K + + ++I F + K KPIIA VNG+ LGGG EIA+ D+++ D A F
Sbjct: 306 DLHKKTFE-DVIEQDFPAQFYSISKCRKPIIAAVNGYALGGGXEIAMMCDIVYAGDKALF 482
Query: 148 GFPEIKLGLIPGIGGTQRFSKIVGKVRANQYILSGQFFDAQKAKDMNVVADVYPKEKLHE 207
PE+ LG +PG GGTQR + VGK +A + ++S A +A+ M +V+ V+P ++ +
Sbjct: 483 AQPEVTLGTLPGAGGTQRLIRAVGKSKAMEMVISANKITAHEAERMGLVSKVFPASEVLD 662
Query: 208 EVLKYAREVAQWSMYTLMTAKKSVNKSEDLGITEGISYERTLFSSLFNLPGSKEGVDAFI 267
++ A ++A +S + K++VN S+++ +++G+ E+ F F +EG+ AF+
Sbjct: 663 AAVQTAEKIAGFSRVAVALCKEAVNASQEMSLSQGLRLEKRFFHXTFGTNDREEGMTAFV 842
Query: 268 NKRKPNFN 275
KR+PNF
Sbjct: 843 EKREPNFT 866
>04595
Length = 1947
Score = 128 bits (321), Expect(2) = 4e-33, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 92/150 (61%)
Frame = +1
Query: 126 LGGGFEIALSADVIFCSDDAKFGFPEIKLGLIPGIGGTQRFSKIVGKVRANQYILSGQFF 185
G G E+A+ D+I+ D A+FG PEI LG IPG GGTQR + VGK +A + +L+G
Sbjct: 118 FGWGCELAMMCDIIYAGDKAQFGQPEIALGTIPGAGGTQRLVRAVGKSKAMEMVLTGDRI 297
Query: 186 DAQKAKDMNVVADVYPKEKLHEEVLKYAREVAQWSMYTLMTAKKSVNKSEDLGITEGISY 245
AQ A+ +V+ V P +L + +K A ++A +S T+ K++VN S+++ + EGI +
Sbjct: 298 SAQDAEKAGLVSRVVPAAELVDTAVKTAEKIAGFSKLTVALCKEAVNASQEMSLAEGIHF 477
Query: 246 ERTLFSSLFNLPGSKEGVDAFINKRKPNFN 275
E+ F + F EG+ AF+ KRKPNF
Sbjct: 478 EKRFFHATFGTNDRMEGMTAFVEKRKPNFT 567
Score = 30.8 bits (68), Expect(2) = 4e-33, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2
Query: 100 SNTFQVYDNVLFKTTKPIIAGVNGFCLGG 128
SN +D V K KPIIA VNG+ LGG
Sbjct: 44 SNFLMDWDAVA-KCRKPIIAAVNGYALGG 127
>11398
Length = 3234
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Frame = -3
Query: 125 CLGGGFEIALSADVIFCSDDAK--FGFPEIKLGLIPGIGGTQRFSKIVGKVRANQYILSG 182
CLGGGFE+AL+ D K PE+ LGL+PG GGTQR K+V A +L+G
Sbjct: 3229 CLGGGFEVALACQYRVAVADKKTTVALPEVMLGLLPGAGGTQRLPKLVPIPTALDMMLTG 3050
Query: 183 QFFDAQKAKDMNVVADVY----PKEKLHEE-VLKYAREVAQWSMYTLM--TAKKSVNK 233
+ A +AK M +V + P E+ LKY EVA S L T KK+ K
Sbjct: 3049 KTIKADRAKKMGLVDQLVQPLGPGLSSPEDNTLKYLEEVAVQSARGLADGTLKKTPKK 2876
>36681
Length = 1210
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 8/179 (4%)
Frame = +3
Query: 3 RVASLNQQITQ----NLCNDSRKVTIEYLDNKTVGVIYFNSPKDLNCXXXXXXXXXXXXI 58
R+A L+ Q T N D R VI N PK LN +
Sbjct: 24 RMAQLSSQATDEVLFNAVGDKR-------------VIVLNRPKALNALNLNMIRHIYPKM 164
Query: 59 TELNNSQDVKVIVILSKFPKAFCAGADITRFTKLS-VQTEMISNTFQVYDNVLFKT---T 114
E ++ +VI KAFCAG DI T+ V ++ + F+ + +K
Sbjct: 165 LEWETDPNISCVVIKGAGDKAFCAGGDIRAVTESGKVGGDLGKDFFKEEYMLNYKIGSYR 344
Query: 115 KPIIAGVNGFCLGGGFEIALSADVIFCSDDAKFGFPEIKLGLIPGIGGTQRFSKIVGKV 173
KP IA ++G +GGG +++ ++ F PE +GL P +GG + G++
Sbjct: 345 KPYIAVIDGITMGGGVGLSVHGKYRVATEKTVFAMPETAIGLFPDVGGGHFLPWLQGRL 521
>26426
Length = 413
Score = 50.8 bits (120), Expect(2) = 1e-09, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +2
Query: 61 LNNSQDVKVIVILSKFPKAFCAGADITRFTKLSVQ-TEMISNTFQVYDNVLFKTTKPIIA 119
+ + D +V+V+ S P FCAGAD+ ++ + T+ + + + P+IA
Sbjct: 74 IKSDNDSRVVVLRSLTPGIFCAGADLKERKGMTTEETKQFVTELRALLVSIEQLPMPVIA 253
Query: 120 GVNGFCLGGGFEIALSADVIFCSDDAKF 147
++G LGGG E+AL+ D+ + +AK
Sbjct: 254 ALDGAALGGGLEMALACDIRTAASNAKM 337
Score = 28.5 bits (62), Expect(2) = 1e-09, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 151 EIKLGLIPGIGGTQRFSKIV 170
E +L +IPG GGT R +I+
Sbjct: 345 ETRLAIIPGAGGTHRLPRIL 404
>04023
Length = 997
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Frame = +2
Query: 131 EIALSADVIFCSDDAKFGFPEIKLGLI---PGIGGTQRFSKIVGKVRANQYILSGQFFDA 187
++ + D+ ++ ++F P + +GL PG+ + V + A + + +GQ A
Sbjct: 5 QLVATCDIAVATEQSRFATPGVHVGLFCTTPGVA----VGRAVPRKVALEMMFTGQPISA 172
Query: 188 QKAKDMNVVADVYPKEKLHEEVLKYAREVAQWSMYTLMTAKKSVNKSEDLGITEGISYER 247
Q A +V+ V P+++L +E + A ++ ++S K + L +
Sbjct: 173 QDALLHGLVSKVVPEDRLQDETQQIAGKICEFSREVTAVGKAAFYAQISLEKRAAYRFAE 352
Query: 248 TLFSSLFNLPGSKEGVDAFINKRKPNF 274
+ L +EG+ AFI+KRKP +
Sbjct: 353 KVMVDNLQLDDCQEGIGAFIDKRKPTW 433
>37516
Length = 358
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Frame = -1
Query: 80 FCAGADITRFTKLSVQT---EMISNTFQVYDNV--LFKTTKPIIAGVNGFCLGGGFEIAL 134
+ +G D+ F + + QT + T V + V L KP+IA VNG +G +
Sbjct: 352 YSSGNDLNNFLQSAPQTTPQDARPGTLVVENIVKTLIDYPKPVIALVNGPAVGIAVTLLG 173
Query: 135 SADVIFCSDDAKFGFPEIKLGLIPGIGGTQRFSKIVGKVRANQYILSGQFFDAQKA 190
D ++CSD A F P +L P + F +++G +A + +L Q AQ+A
Sbjct: 172 LCDAVYCSDRATFHTPFTQLAQNPEGCSSYIFPRLMGGAKATEMLLFNQKITAQEA 5
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00138150__3698.m00208Acyl-CoA_dehydrogenase,
_C-terminal_domain_containing_protein
(417 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08964 114 1e-39
14390 154 6e-38
04495 148 4e-36
33571 138 3e-33
16160 99 3e-21
30191 73 2e-13
03206 68 6e-12
32741 47 1e-05
36054 43 2e-04
24479 43 3e-04
>08964
Length = 2157
Score = 114 bits (284), Expect(2) = 1e-39, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 6/239 (2%)
Frame = -3
Query: 170 GSMETRAKKDGDDYILNGSKTWITNSPIADIFVVWAKDEQ----GDIRGFVLEKGMKGLT 225
G+ A+ DGD ++LNG+K WITN A+ VV+A ++ I F++ +GL+
Sbjct: 1627 GAASCTARLDGDSWVLNGTKAWITNGYEAEATVVFATTDRQLKHKGISAFLVPIPSEGLS 1448
Query: 226 APKIEGKLSLRASITGMILMDNVRVHKSQMLNV--KGLKGPFSCLNNARFGISWGALGAA 283
K E KL ++A+ T ++ ++ R+ K +L +G K L+ R GI+ ALG A
Sbjct: 1447 RGKKEDKLGIKATSTCYLIFEDCRIPKDNLLGQPGQGFKIAMQTLDAGRIGIAGQALGIA 1268
Query: 284 EYCFHAARQYTLDRKQFNVPLASFQLIQKKFADMQTEIALALQACLQVSRLKDSGNLAPE 343
+ A Y R+ F +P+ Q IQ K ADM+ A Q + LKD+G +
Sbjct: 1267 QASLECAMDYAFKRQSFGMPIIKMQTIQTKLADMEMRTQSARLLTWQAAMLKDAGKPFTK 1088
Query: 344 MISLVKRNSCMKSIQICREARDMLGGNGIADEYHILRHSINLETVNTYEGTNDIHALIL 402
++ K + + +A +LGG G + RH + YEGT++I L++
Sbjct: 1087 EAAMAKLAASETATFNAHQAIQILGGMGFVTDMPAERHYRDARITEIYEGTSEIQRLVI 911
Score = 67.4 bits (163), Expect(2) = 1e-39, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Frame = -1
Query: 39 SSLTEEEVTIMENARQFAQDQLMPGILEANKNEHFDKEIMKKFGQMGFLGCTISDYDL-P 97
+ L + + + R FA ++L+P + +K F KE ++K G++G L I + D
Sbjct: 2022 AQLPDTHQMLRQTCRDFADNELVPIAAKLDKECRFPKEQVQKLGELGMLCMDIKEEDGGT 1843
Query: 98 GVSSAAYGLINREVERVDSGYRSALSVQSSLVMHPIHEFGSKQLKDIYIPRLATGELIGC 157
G+ AY + E+ R + +SV ++L + PI + K+ ++ G+ +GC
Sbjct: 1842 GLDYLAYAIAMEEISRGCASTGCIMSVNNTLYLGPIKNNATAAQKEQFMKPFLHGDRVGC 1663
Query: 158 FGLTEPNHGSDPG 170
F L+EP +GSD G
Sbjct: 1662 FALSEPGNGSDAG 1624
>14390
Length = 1789
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 161/307 (52%), Gaps = 6/307 (1%)
Frame = -3
Query: 106 LINREVERVDSGYRSALSVQSSLVMHPIHEFGSKQLKDIYIPRLATGELIGCFGLTEPNH 165
L E+ +VD +Q++L+ + G++Q KD Y+PRL T +++G F L+E
Sbjct: 1769 LTIEELAKVDPSVSVFCDLQNTLINTLLMNLGTQQQKDTYLPRL-TKDMVGSFCLSEAES 1593
Query: 166 GSDPGSMETRAKKDGDDYILNGSKTWITNSPIADIFVVWAKDEQGD----IRGFVLEKGM 221
GSD S+ T+A + G DY++ G K WI+++ A +F+V A + D I F++++
Sbjct: 1592 GSDAFSLRTQAVQQGGDYVITGEKVWISSAEHAGVFLVMANAKPSDGYKGITCFIVDRDT 1413
Query: 222 KGLTAPKIEGKLSLRASITGMILMDNVRVHKSQMLNV--KGLKGPFSCLNNARFGISWGA 279
+GLT E KL LR+S T ++ D VRV +S +L KG K S LN R GI+
Sbjct: 1412 EGLTIGNKEDKLGLRSSSTCVVNFDGVRVPESNILGEFGKGYKYAISMLNEGRIGIASQM 1233
Query: 280 LGAAEYCFHAARQYTLDRKQFNVPLASFQLIQKKFADMQTEIALALQACLQVSRLKDSGN 339
LG AE CF+ YT++RKQF + FQ +Q + A + +I A +R K++G
Sbjct: 1232 LGLAEGCFNRTVPYTMERKQFGRRIWEFQGMQHQIATIAMQIEAARMLVYNAARRKEAGL 1053
Query: 340 LAPEMISLVKRNSCMKSIQICREARDMLGGNGIADEYHILRHSINLETVNTYEGTNDIHA 399
+ ++ K S + + + +GG G +Y I ++ + + YEGT++I
Sbjct: 1052 PFIKEAAMAKLFSAELATVTTSKCIEWMGGVGFTKDYPIEKYYRDCKIGTIYEGTSNIQL 873
Query: 400 LILGRAI 406
+ + I
Sbjct: 872 NTIAKCI 852
>04495
Length = 1549
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 175/382 (45%), Gaps = 9/382 (2%)
Frame = +2
Query: 35 LNLRSSLTEEEVTIMENARQFAQDQLMPGILEANKNEHFDKEIMKKFGQMGFLGC-TISD 93
+ R +EE + AR+F Q++++P E K E+ +K G G LG T +
Sbjct: 29 IGTRRLYSEEHDMFRQTARRFFQEEVLPFHAEWEKAGQVSAEVWQKAGATGLLGVNTPEE 208
Query: 94 YDLPGVSSAAYGLINREVERVDSGYRSALSVQSSLVMHPIHEFGSKQLKDIYIPRLATGE 153
+ G ++ E V+ ++ S +VM I +G+K+ + +IPR+ G
Sbjct: 209 FGGLGGDYLMTNIVQEEQAYVNC-TGPGFALHSDIVMPYITHYGTKEQIEKFIPRMVDGT 385
Query: 154 LIGCFGLTEPNHGSDPGSMETRAKKDGDDYILNGSKTWITNSPIADIFVVW------AKD 207
IG ++EP GSD + T AK+DGDD+ILNGSK +ITN ++ + +V AK
Sbjct: 386 CIGAIAMSEPGAGSDLQGIRTNAKRDGDDWILNGSKVFITNGYMSGVVLVVAITNMEAKS 565
Query: 208 EQGDIRGFVLEKGMKGLTAPKIEGKLSLRASITGMILMDNVRVHKSQMLNV--KGLKGPF 265
I F++E GM G + K+ L+A T + ++VR+ S +L KG
Sbjct: 566 AAHGISLFLVEDGMPGFKKGRKLNKVGLKAQDTSELFFEDVRLPNSALLGQANKGFYYLM 745
Query: 266 SCLNNARFGISWGALGAAEYCFHAARQYTLDRKQFNVPLASFQLIQKKFADMQTEIALAL 325
L R I+ A E+ F R Y +RK F L+ Q IQ K A+++T+I +A
Sbjct: 746 QELPQERLLIATMGTAACEWMFEETRNYVRERKAFGRTLSKLQTIQHKLAEIKTDICVAR 925
Query: 326 QACLQVSRLKDSGNLAPEMISLVKRNSCMKSIQICREARDMLGGNGIADEYHILRHSINL 385
Q + ++ L S+ K +I + + GG G EY I R ++
Sbjct: 926 AFVDQCLDIHNTKGLDSYSASMAKYWVSDLQNKIATQCLQLHGGWGYMLEYPIARAFLDA 1105
Query: 386 ETVNTYEGTNDIHALILGRAIT 407
Y G+N+I ++ I
Sbjct: 1106RVQPIYGGSNEIMKELIAXPIV 1171
>33571
Length = 360
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 85/116 (73%), Gaps = 4/116 (3%)
Frame = -2
Query: 145 YIPRLATGELIGCFGLTEPNHGSDPGSMETRAKKDGDD--YILNGSKTWITNSPIADIFV 202
YIP L G GLTEPNHGSDPGSMET AK + Y LNG+K+WIT+SPIAD+FV
Sbjct: 353 YIPGLQ-GRADWLLGLTEPNHGSDPGSMETNAKFNASKGTYTLNGTKSWITSSPIADVFV 177
Query: 203 VWAK--DEQGDIRGFVLEKGMKGLTAPKIEGKLSLRASITGMILMDNVRVHKSQML 256
VW K + IRGF+LEKGM GL+APKIEGK SLRASITG I+M++V+V +L
Sbjct: 176 VWGKCDSDNNRIRGFILEKGMPGLSAPKIEGKFSLRASITGQIVMEDVQVPAENIL 9
>16160
Length = 1693
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 114/250 (45%), Gaps = 9/250 (3%)
Frame = -2
Query: 166 GSDPGSMETRAKKDGDDYILNGSKTWITNSPIADIFVVWAKDEQGD-------IRGFVLE 218
GSD + T+A K GD YILNG K WITN A+ + V A+ + GF+++
Sbjct: 1689 GSDVAGVRTKAVKKGDKYILNGQKMWITNGGHANWYFVLARTDADPKTPAGKAFTGFIVD 1510
Query: 219 KGMKGLTAPKIEGKLSLRASITGMILMDNVRVHKSQMLNVKGL--KGPFSCLNNARFGIS 276
GL + E + RAS T I ++V V +L +G+ + + R ++
Sbjct: 1509 GDSPGLIRERKEWNMGQRASDTRGITFEDVEVPAENVLGQEGVGFRIAMGAFDKTRPPVA 1330
Query: 277 WGALGAAEYCFHAARQYTLDRKQFNVPLASFQLIQKKFADMQTEIALALQACLQVSRLKD 336
GA+G A+ A +Y+++RK P+ Q + ADM I + A ++ + D
Sbjct: 1329 AGAVGLAQRALDEATRYSMERKTMGKPICEHQAVAFMLADMAIGIETSRLATMRSAWEID 1150
Query: 337 SGNLAPEMISLVKRNSCMKSIQICREARDMLGGNGIADEYHILRHSINLETVNTYEGTND 396
G S+ K + + + +A + GGNG EY + + + + YEGT
Sbjct: 1149 QGRRNTYYASIAKALAADVANKCATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTAQ 970
Query: 397 IHALILGRAI 406
I LI+ R +
Sbjct: 969 IQRLIVSREL 940
>30191
Length = 575
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Frame = +3
Query: 238 SITGMILMDNVRVHKSQML--NVKGLKGPFSCLNNARFGISWGALGAAEYCFHAARQYTL 295
S T I ++VRV K +L G K + R ++ GA+G A+ C A +Y L
Sbjct: 3 SDTRGITFEDVRVPKENVLISEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCMDEALKYAL 182
Query: 296 DRKQFNVPLASFQLIQKKFADMQTEIALALQACLQVSRLKDSGNLAPEMISLVKRNSCMK 355
+RK F VP+A Q +Q ADM + + A + D G S+ K ++
Sbjct: 183 ERKAFGVPIAQHQAVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYASIAKCHAADM 362
Query: 356 SIQICREARDMLGGNGIADEYHILRHSINLETVNTYEGTNDIHALILGR 404
+ +I +A + GGNG +Y + + + + YEGT+ I LI+ R
Sbjct: 363 ANKIASDAVQIFGGNGFNSDYPVEKLMRDAKIYQIYEGTSQIQRLIISR 509
>03206
Length = 1682
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 3/166 (1%)
Frame = -2
Query: 244 LMDNVRVHKSQMLNV--KGLKGPFSCLNNARFGISWGALGAAEYCFHAARQYTLDRKQFN 301
++D+ RV +S +L +G LN R I+ +LGAA+ AR + R+QF
Sbjct: 1591 VLDDCRVPRSNLLGSEGQGFNIAMRGLNGGRVNIASCSLGAAQASVEQARDHLKVRRQFG 1412
Query: 302 VPLASFQLIQKKFADMQTEIALALQACLQVSR-LKDSGNLAPEMISLVKRNSCMKSIQIC 360
L FQ +Q + A+M T++ + Q +R L D + S+ K + + ++C
Sbjct: 1411 QALEDFQYLQFRLAEMSTKVVTSRLLVRQAARALDDDSPDVVALCSMAKLFATEECFKVC 1232
Query: 361 REARDMLGGNGIADEYHILRHSINLETVNTYEGTNDIHALILGRAI 406
EA M GG G +Y + ++ + EGTN++ +++ R +
Sbjct: 1231 NEALQMFGGYGYLKDYPVQQYVRDTRVHCILEGTNEMMRMLVSRDV 1094
>32741
Length = 809
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +3
Query: 135 EFGSKQLKDIYIPRLATGELIGCFGLTEPN-HGSDPGSMETRAKKDGDDYILNGSKTWIT 193
++G++Q + ++ L G++ CFG+TEP SD ++++ ++DGD Y++NG K W +
Sbjct: 624 KYGTQQQQQQWLTPLLDGQIRSCFGMTEPAVASSDATNIQSSIRRDGDHYVINGHKWWTS 803
Query: 194 NS 195
+
Sbjct: 804 GA 809
>36054
Length = 426
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 260 GLKGPFSCLNNARFGISWGALGAAEYCFHAARQYTLDRKQFNVPLASFQLIQKKFADM 317
G K + LNN RFG++ G +YC + A ++ +R QF + SF IQ+K A M
Sbjct: 58 GFKVAMNILNNGRFGMAAALSGTMKYCIYKAVEHAGNRTQFGRRIDSFGAIQEKIARM 231
>24479
Length = 1105
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = +2
Query: 175 RAKKDGDDYILNGSKTWITNSPIADIFVVWAKDEQGD-------IRGFVLEKGMKGLTAP 227
+ ++ GD YILNG K WITN A+ + V A+ + GF+++ GL
Sbjct: 8 QGREKGDKYILNGQKMWITNGGHANWYFVLARTDVDPKTPAGKAFTGFIVDGDSPGLIRE 187
Query: 228 KIEGKLSLRASITGMILMDNVRV 250
+ E + RAS T I ++V V
Sbjct: 188 RKEWNMGQRASDTRGITFEDVEV 256
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 362 EARDMLGGNGIADEYHILRHSINLETVNTYEGTNDIHALILGRAI 406
+A + GGNG EY + + + + YEGT I LI+ R +
Sbjct: 432 DAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTAQIQRLIVSREL 566
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00471260__3686.m00084DnaJ_C_terminal_region_family_protein
(334 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10680 155 2e-38
20488 112 2e-25
14550 72 4e-13
07620 46 1e-11
12040 60 1e-09
13998 54 7e-08
02324 53 1e-07
02088 43 2e-04
22505 31 6e-04
13422 37 0.014
26984 35 0.035
18150 33 0.13
15360 33 0.17
20409 31 0.70
38321 28 5.3
>10680
Length = 1093
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 149/275 (54%), Gaps = 7/275 (2%)
Frame = -3
Query: 60 DPVKRSFYDKYGEDKLKEGFFNQQALKG----GYRFGGNPEEIFEKFFGAMNPFQQIYDS 115
D KR+ YD++GE+ LK G G GY F GNP+++F FFG NPFQ+ YD
Sbjct: 1091 DQRKRAVYDQFGEEGLKNGVPTGSGETGAWTQGYTFHGNPDKVFRDFFGGDNPFQEFYDR 912
Query: 116 ENQE---NVGSLFGYAFGAQNQSAPLPPKPLHVVVECTLAELYNGCSKNVTYQRTVLNKD 172
+ + G L G G++ Q P+ + L + +E E+++GC+K + R V+N+D
Sbjct: 911 VDGDLSMGFGGLHGR--GSKKQDPPIE-RDLFLALE----EVFHGCTKKMKISRRVMNED 753
Query: 173 GRTTTDIKESKMVEVKPGYKNGEQIKYPKLGNEVAGLPNSDLIFTVKELAHSTLKRKGND 232
G T++ + + VK G+K G +I +PK G++ +D++F VK+ H +R+G +
Sbjct: 752 GHTSSIRDKILTITVKKGWKPGTKITFPKEGDQGPNNVPADIVFIVKDKPHPRFRREGLN 573
Query: 233 LIYYHKLKLIDALYGRPVHFTTLDGRKLFVAIDQVISPSYVKKVNGEGMPIYNPQEYKVE 292
LI+ + L AL G V TLD R L + I+ ++ P Y K V GEGMP+ +
Sbjct: 572 LIHTANVLLGRALTGTTVDIHTLDDRTLHIPINDIVKPGYKKIVPGEGMPMSS------- 414
Query: 293 YFGQPPNKGDLYIKFDIQFPAQIDDDKRAELEQIL 327
P KGDL I+F+I+FP + +++ + L
Sbjct: 413 ---DPTQKGDLIIEFNIEFPTSLTPERKDLIRTAL 318
>20488
Length = 3281
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 110/201 (54%)
Frame = -2
Query: 127 YAFGAQNQSAPLPPKPLHVVVECTLAELYNGCSKNVTYQRTVLNKDGRTTTDIKESKMVE 186
Y G++ Q P+ + L + +E E+++GC+K + R V+N+DG T++ + +
Sbjct: 1732 YGRGSKKQDPPIE-RDLFLALE----EVFHGCTKKMKISRRVMNEDGHTSSIRDKILTIT 1568
Query: 187 VKPGYKNGEQIKYPKLGNEVAGLPNSDLIFTVKELAHSTLKRKGNDLIYYHKLKLIDALY 246
VK G+K G +I +PK G++ +D++F VK+ H +R+G +LI+ + L AL
Sbjct: 1567 VKKGWKPGTKITFPKEGDQGPNNVPADIVFIVKDKPHPRFRREGLNLIHTANVLLGRALT 1388
Query: 247 GRPVHFTTLDGRKLFVAIDQVISPSYVKKVNGEGMPIYNPQEYKVEYFGQPPNKGDLYIK 306
G V TLD R L + I+ ++ P Y K V GEGMP+ + P KGDL I+
Sbjct: 1387 GTTVDIHTLDDRTLHIPINDIVKPGYKKIVPGEGMPMSS----------DPTZKGDLIIE 1238
Query: 307 FDIQFPAQIDDDKRAELEQIL 327
F+I+FP + +++ + L
Sbjct: 1237 FNIEFPTSLTPERKDLIRTAL 1175
>14550
Length = 1395
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Frame = -2
Query: 185 VEVKPGYKNGEQIKYPKLGNEVAGLPNSDLIFTVKELAHSTLKRKGNDLIYYHKLKLIDA 244
VE++PG ++G++ + G DL F ++++ H+ +RKG+DL + L DA
Sbjct: 578 VEIEPGMRDGQEYPFVAEGEPHMDGEPGDLRFIIRQVKHARFERKGDDLYTNVTVSLQDA 399
Query: 245 LYGRPVHFTTLDGRKLFVAIDQVISPSYVKKVNGEGMPIYNPQEYKVEYFGQPPNKGDLY 304
L G + LDG K+ V D++ P + + EGMP Y KG L+
Sbjct: 398 LIGFEMDIVHLDGHKVHVIRDKITWPGARMRKSNEGMPNYENNNV----------KGSLF 249
Query: 305 IKFDIQFP-AQIDDDKRAELEQILGQQSQ 332
I FDI FP + ++ + L+ IL Q ++
Sbjct: 248 ITFDIDFPKGTLSEEDKEGLKAILKQDAK 162
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 44/77 (57%)
Frame = -1
Query: 2 SRDYYEDLEISRDASDSVIAQAYRKLALRWHPQIKGNEDQQTRYSFFCKVSEAYEVLSDP 61
RD+Y+ L +S+ A I +AYRK+A HP N D F + AYEVLSD
Sbjct: 1140 GRDFYKILGVSKSADTKQIKRAYRKIAKELHPDK--NRDDPEAEQRFQDLGAAYEVLSDE 967
Query: 62 VKRSFYDKYGEDKLKEG 78
KR YD++GE+ LK+G
Sbjct: 966 EKRKVYDRHGEEGLKQG 916
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 279 EGMPIYNPQEYKVEYFGQPPNKGDLYIKFDIQFP-AQIDDDKRAELEQILGQQSQ 332
EGMP Y K G L+I FDI FP + ++ + L+ IL Q ++
Sbjct: 1380 EGMPNYENNNVK----------GSLFITFDIDFPKGTLSEEDKEGLKAILKQDAK 1246
>07620
Length = 1775
Score = 45.8 bits (107), Expect(2) = 1e-11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 48 FCKVSEAYEVLSDPVKRSFYDKYGEDKLKEGFFNQQALKGGYRFGGNPEEIFEKFFGAMN 107
F K+ AY VLSDP KR YD YG + + + + GG+ PEE+F FFG
Sbjct: 222 FKKIGNAYSVLSDPDKRRKYDVYGPELQQPSQHHSEYSNGGFEGDITPEELFNMFFGGGY 401
Query: 108 PFQQI--YDSENQENVGSLFGYAFGAQNQS 135
P + + + Y++G + +S
Sbjct: 402 PSGHVNRRHQHAHNHRSHYYTYSYGREQRS 491
Score = 40.8 bits (94), Expect(2) = 1e-11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +1
Query: 2 SRDYYEDLEISRDASDSVIAQAYRKLALRWHP 33
+DYYE L++ +D ++S + +AYRKLAL+ HP
Sbjct: 94 CKDYYEVLDVKKDCTESDMKKAYRKLALQMHP 189
>12040
Length = 1151
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Frame = -2
Query: 213 DLIFTVKELAHSTLKRKGNDLIYYHKLKLIDALYGRPVHFTTLDGRKLFVAID--QVISP 270
D+I + E HST G DL+ L+L++AL G T+D R L VA +VI
Sbjct: 1150 DIIILLDEKEHSTFVHAGTDLMMKMPLQLVEALCGFQRIVKTMDDRDLLVATQPGEVIRH 971
Query: 271 SYVKKVNGEGMPIY-NPQEYKVEYFGQPPNKGDLYIKFDIQFPAQIDDDKRAELEQILGQ 329
K + EGMPI+ NP E KG L I+F++ FP I+ L+Q L
Sbjct: 970 EMTKCIAEEGMPIFKNPME-----------KGTLIIQFEVIFPDVINPSVIPTLKQCLPP 824
Query: 330 QSQI 333
+I
Sbjct: 823 APEI 812
>13998
Length = 1075
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Frame = +1
Query: 3 RDYYEDLEISRDASDSVIAQAYRKLALRWHPQIKGNEDQQTRYS---FFCKVSEAYEVLS 59
+DYY+ L ISR+A++ I +AYRK AL HP N R F +V EAY +LS
Sbjct: 202 KDYYKILGISRNATEDEIKKAYRKKALVHHPDRHANSSADVRKDEELKFKEVGEAYAILS 381
Query: 60 DPVKRSFYDKYGE--DKLKEGFFNQQALKGGYRFGGNPEEIF 99
D K++ YD + D+++ F Q + ++F G F
Sbjct: 382 DGAKKTRYDSGHDIQDEMQADFDPNQMFRSFFQFSGGRNSSF 507
>02324
Length = 2058
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Frame = +2
Query: 3 RDYYEDLEISRDASDSVIAQAYRKLALRWHPQIKGNEDQQTRYSFFCKVSEAYEVLSDPV 62
R +YE L + R A + + +AYRKLAL++HP K + + + F V +AYE+L+DP
Sbjct: 101 RCHYEVLGVERSADNDDLKKAYRKLALKFHPD-KNPDSVEEATAQFRLVQQAYEILTDPQ 277
Query: 63 KRSFYDKYGEDKLKEG 78
+RS+YD++ E L+ G
Sbjct: 278 ERSWYDRHREAILRGG 325
>02088
Length = 1062
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 4 DYYEDLEISRDASDSVIAQAYRKLALRWHPQIKGNEDQQTRYSFFCKVSEAYEVLSDPVK 63
D YE + I R+A+ + + Y K++L HP +++T F + + Y VLSD K
Sbjct: 108 DLYEVIGIRREATPQEVKKGYHKVSLAVHPDQVSAAEKETATRKFQTLGKVYTVLSDKDK 287
Query: 64 RSFYDKYGE 72
R+ YD+ GE
Sbjct: 288 RAXYDETGE 314
>22505
Length = 784
Score = 31.2 bits (69), Expect(2) = 6e-04, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 1 MSRDYYEDLEISRDASDSVIAQAYRKLALRWHP 33
M D Y L + +A++ I +AYRK AL+ HP
Sbjct: 661 MKMDLYGILGVGPEANEKQIVKAYRKKALKCHP 563
Score = 29.3 bits (64), Expect(2) = 6e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = -3
Query: 38 NEDQQTRYSFFCKVSEAYEVLSDPVKRSFYD------KYGEDKLKEGFFNQQA 84
N D F ++S+A EVL+DP ++ YD K E++ +E N++A
Sbjct: 557 NPDNPKAAELFHELSKALEVLTDPSAKAAYDNVLRAKKLAEERNRELDSNEKA 399
>13422
Length = 930
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +1
Query: 4 DYYEDLEISR---DASDSVIAQAYRKLALRWHP---QIKGNEDQQTRYSFFCKVSEAYEV 57
D+Y L +S+ A+ I + YR+ L HP + +G + +F +S AYE+
Sbjct: 337 DHYAVLGLSKLRYKATADHIKRIYRQKVLLHHPDKRRARGLHVENGENDYFLCISRAYEI 516
Query: 58 LSDPVKRSFYD 68
L DPVKR +D
Sbjct: 517 LGDPVKRRSFD 549
>26984
Length = 1107
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -2
Query: 3 RDYYEDLEISRDASDSVIAQAYRKLALRWHP---QIKGNEDQQTRYSFFCKVSEAYEVLS 59
+D Y L + DASD I + YR+ A+ HP Q G E+ F + A+E++
Sbjct: 518 KDPYSILGLRADASDEDIKRYYRRQAVLVHPDKNQEPGAEEA------FKILGHAFEMIG 357
Query: 60 DPVKRSFYDKY 70
DP KR YD +
Sbjct: 356 DPTKRKEYDTH 324
>18150
Length = 768
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 53 EAYEVLSDPVKRSFYDKYGEDKLK 76
EA+E+LSD KR+ YD YGE L+
Sbjct: 119 EAHEILSDKHKRTIYDTYGEKGLE 190
>15360
Length = 502
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 9 LEISRDASDSVIAQAYRKLALRWHPQIKGNEDQQTRYSFFCKVSEAYEVLS 59
L+I + + Y++LAL+WHP+ N + + F +V++AY +L+
Sbjct: 70 LDIPAGSDQESLKTKYKQLALKWHPEKHKNAAEAVKQ--FIQVTQAYRLLA 216
>20409
Length = 396
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Frame = +2
Query: 63 KRSFYDKYGEDKLKEGF-------------FNQQALKGGYRFGGNP-EEIFEKFFGAMNP 108
KR YD+YG+D L + F+ + GG+ F P EE+F +FFG +P
Sbjct: 146 KRRIYDEYGKDGLGDRAQTRTHSRHHYTHDFDDFDIMGGFPFVFRPPEEVFREFFGGNSP 325
Query: 109 FQQIYDSEN 117
F + N
Sbjct: 326 FADFFRDAN 352
>38321
Length = 1059
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 279 EGMPIYNPQEYKVEYFGQPPNKGDLYIKFDIQFP-AQIDDDKRAELEQILGQQSQ 332
EGMP Y K G L+I FDI FP + ++ + L+ IL Q ++
Sbjct: 1044 EGMPNYENNNVK----------GSLFITFDIDFPKGTLSEEDKEGLKAILKQDAK 910
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00346490__3695.m00122Ubiquitin_family_protein
(304 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04649 155 2e-38
13455 153 1e-37
04017 152 2e-37
00758 150 5e-37
03942 149 1e-36
34270 118 6e-34
08296 96 2e-20
24173 86 2e-17
02863 55 8e-17
25295 50 2e-06
14135 49 3e-06
13753 45 5e-05
34268 44 1e-04
22667 37 0.009
04336 30 1.4
>04649
Length = 1590
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 75 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 133 SDYNIQKESTLHLVLRLRGG 152
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 151 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 209 SDYNIQKESTLHLVLRLRGG 228
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 227 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 285 SDYNIQKESTLHLVLRLRGG 304
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -2
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 449 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 269 IQKESTLHLVLRLRGG 222
>13455
Length = 809
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 76/79 (96%)
Frame = +3
Query: 75 GGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 134
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 351 ASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 530
Query: 135 YNIQKESTLHLVLRLRGGM 153
YNIQKESTLHLVLRLRGG+
Sbjct: 531 YNIQKESTLHLVLRLRGGI 587
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 76/79 (96%)
Frame = +3
Query: 151 GGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 351 ASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 530
Query: 211 YNIQKESTLHLVLRLRGGM 229
YNIQKESTLHLVLRLRGG+
Sbjct: 531 YNIQKESTLHLVLRLRGGI 587
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 75/78 (96%)
Frame = +3
Query: 227 GGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 286
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 351 ASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 530
Query: 287 YNIQKESTLHLVLRLRGG 304
YNIQKESTLHLVLRLRGG
Sbjct: 531 YNIQKESTLHLVLRLRGG 584
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 357 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 536
Query: 61 IQKESTLHLVLRLRGGM 77
IQKESTLHLVLRLRGG+
Sbjct: 537 IQKESTLHLVLRLRGGI 587
>04017
Length = 690
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 61 IQKESTLHLVLRLRGGMQ 78
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 77 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 137 IQKESTLHLVLRLRGGMQ 154
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 153 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 213 IQKESTLHLVLRLRGGMQ 230
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -1
Query: 229 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 289 IQKESTLHLVLRLRGG 304
IQKESTLHLVLRLRGG
Sbjct: 162 IQKESTLHLVLRLRGG 115
>00758
Length = 1050
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 77 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 137 IQKESTLHLVLRLRGG 152
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 153 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 213 IQKESTLHLVLRLRGG 228
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 229 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 289 IQKESTLHLVLRLRGG 304
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
>03942
Length = 912
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/81 (92%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Frame = +1
Query: 73 LRGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 391 CRGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRT 570
Query: 132 LSDYNIQKESTLHLVLRLRGG 152
LSDYNIQKESTLHLVLRLRGG
Sbjct: 571 LSDYNIQKESTLHLVLRLRGG 633
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/81 (92%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Frame = +1
Query: 149 LRGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 391 CRGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRT 570
Query: 208 LSDYNIQKESTLHLVLRLRGG 228
LSDYNIQKESTLHLVLRLRGG
Sbjct: 571 LSDYNIQKESTLHLVLRLRGG 633
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/81 (92%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Frame = +1
Query: 225 LRGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 391 CRGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRT 570
Query: 284 LSDYNIQKESTLHLVLRLRGG 304
LSDYNIQKESTLHLVLRLRGG
Sbjct: 571 LSDYNIQKESTLHLVLRLRGG 633
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 406 MQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 585
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 586 IQKESTLHLVLRLRGG 633
>34270
Length = 274
Score = 118 bits (296), Expect(3) = 6e-34, Method: Compositional matrix adjust.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 83 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 141
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 118 bits (296), Expect(3) = 6e-34, Method: Compositional matrix adjust.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 159 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 217
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 35.4 bits (80), Expect(3) = 6e-34, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 67 LHLVLRLRGGMQIFVK 82
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 35.4 bits (80), Expect(3) = 6e-34, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 143 LHLVLRLRGGMQIFVK 158
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 28.1 bits (61), Expect(3) = 6e-34, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 138 QKESTLHLVLRLRGGMQ 154
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
Score = 28.1 bits (61), Expect(3) = 6e-34, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 214 QKESTLHLVLRLRGGMQ 230
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
Score = 118 bits (296), Expect(3) = 7e-34, Method: Compositional matrix adjust.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 235 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 293
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 35.4 bits (80), Expect(3) = 7e-34, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 219 LHLVLRLRGGMQIFVK 234
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 27.7 bits (60), Expect(3) = 7e-34, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 290 QKESTLHLVLRLRGG 304
+K TLHLVLRLRGG
Sbjct: 218 RKSPTLHLVLRLRGG 262
Score = 118 bits (296), Expect(2) = 2e-29, Method: Compositional matrix adjust.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 7 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 28.1 bits (61), Expect(2) = 2e-29, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 62 QKESTLHLVLRLRGGMQ 78
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
>08296
Length = 897
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 69 LVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128
++ R M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D
Sbjct: 103 VIBRXYNKMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMND 282
Query: 129 GRTLSDYNIQKESTLHLVLRLRGGM 153
+T DY + S LHLVL LRGG+
Sbjct: 283 EKTAQDYKVIGGSVLHLVLALRGGL 357
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 145 LVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204
++ R M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D
Sbjct: 103 VIBRXYNKMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMND 282
Query: 205 GRTLSDYNIQKESTLHLVLRLRGGM 229
+T DY + S LHLVL LRGG+
Sbjct: 283 EKTAQDYKVIGGSVLHLVLALRGGL 357
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 60/84 (71%)
Frame = +1
Query: 221 LVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280
++ R M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D
Sbjct: 103 VIBRXYNKMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMND 282
Query: 281 GRTLSDYNIQKESTLHLVLRLRGG 304
+T DY + S LHLVL LRGG
Sbjct: 283 EKTAQDYKVIGGSVLHLVLALRGG 354
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 127 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 306
Query: 61 IQKESTLHLVLRLRGGM 77
+ S LHLVL LRGG+
Sbjct: 307 VIGGSVLHLVLALRGGL 357
>24173
Length = 413
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 5 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 64 ESTLHLVLRLRG 75
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 81 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 139
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 140 ESTLHLVLRLRG 151
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 157 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 215
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 216 ESTLHLVLRLRG 227
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 233 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 291
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 292 ESTLHLVLRLRG 303
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
>02863
Length = 583
Score = 54.7 bits (130), Expect(2) = 8e-17, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 5 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 54.7 bits (130), Expect(2) = 8e-17, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 81 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 126
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 54.7 bits (130), Expect(2) = 8e-17, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 157 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 202
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 54.7 bits (130), Expect(2) = 8e-17, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 233 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 278
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 49.3 bits (116), Expect(2) = 8e-17, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 46 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 49.3 bits (116), Expect(2) = 8e-17, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 49.3 bits (116), Expect(2) = 8e-17, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 198 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 227
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 49.3 bits (116), Expect(2) = 8e-17, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 274 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 303
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
>25295
Length = 998
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 8 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 68 HLVLRLRGG 76
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 84 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 143
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 144 HLVLRLRGG 152
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 160 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 219
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 220 HLVLRLRGG 228
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 236 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 295
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 296 HLVLRLRGG 304
L ++ RGG
Sbjct: 784 QLQMKERGG 758
>14135
Length = 567
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 8 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 68 HLVLRLRGG 76
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 84 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 143
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 144 HLVLRLRGG 152
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 160 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 219
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 220 HLVLRLRGG 228
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 236 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 295
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 296 HLVLRLRGG 304
L ++ RGG
Sbjct: 365 QLQMKERGG 391
>13753
Length = 812
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 61 IQKESTLHLVLRLRGG 76
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 77 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 137 IQKESTLHLVLRLRGG 152
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 153 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 213 IQKESTLHLVLRLRGG 228
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 229 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 289 IQKESTLHLVLRLRGG 304
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
>34268
Length = 463
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 1 MQIFVKTLTGKTITLDVEASDTIEN 25
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 77 MQIFVKTLTGKTITLDVEASDTIEN 101
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 153 MQIFVKTLTGKTITLDVEASDTIEN 177
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 229 MQIFVKTLTGKTITLDVEASDTIEN 253
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
>22667
Length = 1002
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 61 IQKESTLHLVLRLRGGMQ 78
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 137 IQKESTLHLVLRLRGGMQ 154
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 213 IQKESTLHLVLRLRGGMQ 230
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 289 IQKESTLHLVLRLRGG 304
IQKESTLHLVLRLRGG
Sbjct: 450 IQKESTLHLVLRLRGG 497
>04336
Length = 674
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 58 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKI 106
DYNI E L +VLRL + + K++ LD+E + I N+ + +
Sbjct: 105 DYNINLEMVLVMVLRLI-DISPLSQVTCCKSLNLDMECKNLISNIHSHM 248
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKI 182
DYNI E L +VLRL + + K++ LD+E + I N+ + +
Sbjct: 105 DYNINLEMVLVMVLRLI-DISPLSQVTCCKSLNLDMECKNLISNIHSHM 248
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKI 258
DYNI E L +VLRL + + K++ LD+E + I N+ + +
Sbjct: 105 DYNINLEMVLVMVLRLI-DISPLSQVTCCKSLNLDMECKNLISNIHSHM 248
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|1778712|gb|AAC47430.1|_polyubiquitin
(381 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04649 155 3e-38
13455 152 1e-37
04017 152 3e-37
00758 150 6e-37
03942 149 2e-36
34270 115 9e-33
08296 96 3e-20
24173 86 3e-17
02863 55 1e-16
25295 49 2e-06
14135 49 4e-06
13753 44 7e-05
34268 44 1e-04
22667 37 0.012
>04649
Length = 1590
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 75 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 133 SDYNIQKESTLHLVLRLRGG 152
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 151 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 209 SDYNIQKESTLHLVLRLRGG 228
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 227 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 285 SDYNIQKESTLHLVLRLRGG 304
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 303 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 361 SDYNIQKESTLHLVLRLRGG 380
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -2
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 449 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 269 IQKESTLHLVLRLRGG 222
>13455
Length = 809
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 76/79 (96%)
Frame = +3
Query: 75 GGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 134
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 351 ASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 530
Query: 135 YNIQKESTLHLVLRLRGGM 153
YNIQKESTLHLVLRLRGG+
Sbjct: 531 YNIQKESTLHLVLRLRGGI 587
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 76/79 (96%)
Frame = +3
Query: 151 GGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 351 ASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 530
Query: 211 YNIQKESTLHLVLRLRGGM 229
YNIQKESTLHLVLRLRGG+
Sbjct: 531 YNIQKESTLHLVLRLRGGI 587
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 76/79 (96%)
Frame = +3
Query: 227 GGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 286
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 351 ASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 530
Query: 287 YNIQKESTLHLVLRLRGGM 305
YNIQKESTLHLVLRLRGG+
Sbjct: 531 YNIQKESTLHLVLRLRGGI 587
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/79 (93%), Positives = 75/79 (94%)
Frame = +3
Query: 303 GGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 362
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 351 ASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 530
Query: 363 YNIQKESTLHLVLRLRGGF 381
YNIQKESTLHLVLRLRGG
Sbjct: 531 YNIQKESTLHLVLRLRGGI 587
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/77 (96%), Positives = 76/77 (98%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 357 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 536
Query: 61 IQKESTLHLVLRLRGGM 77
IQKESTLHLVLRLRGG+
Sbjct: 537 IQKESTLHLVLRLRGGI 587
>04017
Length = 690
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 61 IQKESTLHLVLRLRGGMQ 78
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 77 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 137 IQKESTLHLVLRLRGGMQ 154
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 153 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 213 IQKESTLHLVLRLRGGMQ 230
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 229 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 289 IQKESTLHLVLRLRGGMQ 306
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -1
Query: 305 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 365 IQKESTLHLVLRLRGG 380
IQKESTLHLVLRLRGG
Sbjct: 162 IQKESTLHLVLRLRGG 115
>00758
Length = 1050
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 77 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 137 IQKESTLHLVLRLRGG 152
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 153 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 213 IQKESTLHLVLRLRGG 228
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 229 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 289 IQKESTLHLVLRLRGG 304
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 305 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 365 IQKESTLHLVLRLRGG 380
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
>03942
Length = 912
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/81 (92%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Frame = +1
Query: 73 LRGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 391 CRGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRT 570
Query: 132 LSDYNIQKESTLHLVLRLRGG 152
LSDYNIQKESTLHLVLRLRGG
Sbjct: 571 LSDYNIQKESTLHLVLRLRGG 633
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/81 (92%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Frame = +1
Query: 149 LRGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 391 CRGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRT 570
Query: 208 LSDYNIQKESTLHLVLRLRGG 228
LSDYNIQKESTLHLVLRLRGG
Sbjct: 571 LSDYNIQKESTLHLVLRLRGG 633
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/81 (92%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Frame = +1
Query: 225 LRGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 391 CRGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRT 570
Query: 284 LSDYNIQKESTLHLVLRLRGG 304
LSDYNIQKESTLHLVLRLRGG
Sbjct: 571 LSDYNIQKESTLHLVLRLRGG 633
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/81 (92%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Frame = +1
Query: 301 LRGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 391 CRGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRT 570
Query: 360 LSDYNIQKESTLHLVLRLRGG 380
LSDYNIQKESTLHLVLRLRGG
Sbjct: 571 LSDYNIQKESTLHLVLRLRGG 633
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/76 (94%), Positives = 74/76 (97%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 406 MQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 585
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 586 IQKESTLHLVLRLRGG 633
>34270
Length = 274
Score = 115 bits (287), Expect(3) = 9e-33, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 83 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 141
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 115 bits (287), Expect(3) = 9e-33, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 159 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 217
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 115 bits (287), Expect(3) = 9e-33, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 235 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 293
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 35.4 bits (80), Expect(3) = 9e-33, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 67 LHLVLRLRGGMQIFVK 82
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 35.4 bits (80), Expect(3) = 9e-33, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 143 LHLVLRLRGGMQIFVK 158
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 35.4 bits (80), Expect(3) = 9e-33, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 219 LHLVLRLRGGMQIFVK 234
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 28.1 bits (61), Expect(3) = 9e-33, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 138 QKESTLHLVLRLRGGMQ 154
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
Score = 28.1 bits (61), Expect(3) = 9e-33, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 214 QKESTLHLVLRLRGGMQ 230
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
Score = 28.1 bits (61), Expect(3) = 9e-33, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 290 QKESTLHLVLRLRGGMQ 306
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
Score = 115 bits (287), Expect(3) = 1e-32, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 311 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 369
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 35.4 bits (80), Expect(3) = 1e-32, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 295 LHLVLRLRGGMQIFVK 310
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 27.7 bits (60), Expect(3) = 1e-32, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 366 QKESTLHLVLRLRGG 380
+K TLHLVLRLRGG
Sbjct: 218 RKSPTLHLVLRLRGG 262
Score = 115 bits (287), Expect(2) = 3e-28, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 7 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 28.1 bits (61), Expect(2) = 3e-28, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 62 QKESTLHLVLRLRGGMQ 78
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
>08296
Length = 897
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 69 LVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128
++ R M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D
Sbjct: 103 VIBRXYNKMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMND 282
Query: 129 GRTLSDYNIQKESTLHLVLRLRGGM 153
+T DY + S LHLVL LRGG+
Sbjct: 283 EKTAQDYKVIGGSVLHLVLALRGGL 357
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 145 LVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204
++ R M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D
Sbjct: 103 VIBRXYNKMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMND 282
Query: 205 GRTLSDYNIQKESTLHLVLRLRGGM 229
+T DY + S LHLVL LRGG+
Sbjct: 283 EKTAQDYKVIGGSVLHLVLALRGGL 357
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Frame = +1
Query: 221 LVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280
++ R M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D
Sbjct: 103 VIBRXYNKMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMND 282
Query: 281 GRTLSDYNIQKESTLHLVLRLRGGM 305
+T DY + S LHLVL LRGG+
Sbjct: 283 EKTAQDYKVIGGSVLHLVLALRGGL 357
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 60/85 (70%)
Frame = +1
Query: 297 LVLRLRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356
++ R M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D
Sbjct: 103 VIBRXYNKMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMND 282
Query: 357 GRTLSDYNIQKESTLHLVLRLRGGF 381
+T DY + S LHLVL LRGG
Sbjct: 283 EKTAQDYKVIGGSVLHLVLALRGGL 357
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 127 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 306
Query: 61 IQKESTLHLVLRLRGGM 77
+ S LHLVL LRGG+
Sbjct: 307 VIGGSVLHLVLALRGGL 357
>24173
Length = 413
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 5 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 64 ESTLHLVLRLRG 75
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 81 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 139
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 140 ESTLHLVLRLRG 151
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 157 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 215
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 216 ESTLHLVLRLRG 227
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 233 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 291
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 292 ESTLHLVLRLRG 303
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 309 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 367
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 368 ESTLHLVLRLRG 379
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
>02863
Length = 583
Score = 54.7 bits (130), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 5 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 54.7 bits (130), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 81 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 126
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 54.7 bits (130), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 157 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 202
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 54.7 bits (130), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 233 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 278
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 54.7 bits (130), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 309 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 354
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKHW 462
Score = 49.3 bits (116), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 46 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 49.3 bits (116), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 49.3 bits (116), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 198 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 227
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 49.3 bits (116), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 274 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 303
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 49.3 bits (116), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +3
Query: 350 AGKQLEDGRTLSDYNIQKESTLHLVLRLRG 379
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 447 CWKTLEDGRLLSDYNITDDSTLHLVLRLRG 536
>25295
Length = 998
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 8 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 68 HLVLRLRGG 76
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 84 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 143
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 144 HLVLRLRGG 152
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 160 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 219
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 220 HLVLRLRGG 228
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 236 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 295
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 296 HLVLRLRGG 304
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 312 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 371
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 372 HLVLRLRGG 380
L ++ RGG
Sbjct: 784 QLQMKERGG 758
>14135
Length = 567
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 8 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 68 HLVLRLRGG 76
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 84 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 143
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 144 HLVLRLRGG 152
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 160 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 219
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 220 HLVLRLRGG 228
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 236 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 295
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 296 HLVLRLRGG 304
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 312 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 371
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 372 HLVLRLRGG 380
L ++ RGG
Sbjct: 365 QLQMKERGG 391
>13753
Length = 812
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 61 IQKESTLHLVLRLRGG 76
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 77 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 137 IQKESTLHLVLRLRGG 152
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 153 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 213 IQKESTLHLVLRLRGG 228
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 229 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 289 IQKESTLHLVLRLRGG 304
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = -3
Query: 305 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED LS
Sbjct: 498 MQLFVHAQ--QIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--T 331
Query: 365 IQKESTLHLVLRLRGG 380
++ STL + R+ GG
Sbjct: 330 LEDLSTLQVEQRMLGG 283
>34268
Length = 463
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 1 MQIFVKTLTGKTITLDVEASDTIEN 25
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 77 MQIFVKTLTGKTITLDVEASDTIEN 101
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 153 MQIFVKTLTGKTITLDVEASDTIEN 177
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 229 MQIFVKTLTGKTITLDVEASDTIEN 253
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 305 MQIFVKTLTGKTITLDVEASDTIEN 329
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
>22667
Length = 1002
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 61 IQKESTLHLVLRLRGGMQ 78
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 137 IQKESTLHLVLRLRGGMQ 154
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 213 IQKESTLHLVLRLRGGMQ 230
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 289 IQKESTLHLVLRLRGGMQ 306
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 365 IQKESTLHLVLRLRGG 380
IQKESTLHLVLRLRGG
Sbjct: 450 IQKESTLHLVLRLRGG 497
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00346480__3695.m00121Ubiquitin_family_protein
(854 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04649 156 4e-38
04017 154 2e-37
13455 153 3e-37
00758 151 1e-36
03942 150 3e-36
34270 116 2e-33
08296 96 6e-20
02863 54 1e-16
24173 84 3e-16
25295 49 7e-06
14135 49 1e-05
13753 44 2e-04
34268 42 0.002
22667 37 0.025
17776 29 7.7
>04649
Length = 1590
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 625 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 682
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 683 SDYNIQKESTLHLVLRLRGG 702
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 701 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 758
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 759 SDYNIQKESTLHLVLRLRGG 778
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 2/80 (2%)
Frame = -2
Query: 777 GG--MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 834
GG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 461 GGXXMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 282
Query: 835 SDYNIQKESTLHLVLRLRGG 854
SDYNIQKESTLHLVLRLRGG
Sbjct: 281 SDYNIQKESTLHLVLRLRGG 222
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/62 (95%), Positives = 61/62 (98%)
Frame = -2
Query: 565 LDVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 624
L+VE SD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
Sbjct: 407 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 228
Query: 625 GG 626
GG
Sbjct: 227 GG 222
>04017
Length = 690
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 627 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 687 IQKESTLHLVLRLRGGMQ 704
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 703 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 762
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 763 IQKESTLHLVLRLRGGMQ 780
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -1
Query: 779 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 838
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 839 IQKESTLHLVLRLRGG 854
IQKESTLHLVLRLRGG
Sbjct: 162 IQKESTLHLVLRLRGG 115
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 62/64 (96%)
Frame = -1
Query: 565 LDVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 624
L+VE SD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
Sbjct: 300 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 121
Query: 625 GGMQ 628
GG +
Sbjct: 120 GGAK 109
>13455
Length = 809
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/81 (93%), Positives = 78/81 (96%), Gaps = 1/81 (1%)
Frame = +3
Query: 624 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 682
RG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 345 RGASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 524
Query: 683 SDYNIQKESTLHLVLRLRGGM 703
SDYNIQKESTLHLVLRLRGG+
Sbjct: 525 SDYNIQKESTLHLVLRLRGGI 587
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/81 (93%), Positives = 78/81 (96%), Gaps = 1/81 (1%)
Frame = +3
Query: 700 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 758
RG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 345 RGASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 524
Query: 759 SDYNIQKESTLHLVLRLRGGM 779
SDYNIQKESTLHLVLRLRGG+
Sbjct: 525 SDYNIQKESTLHLVLRLRGGI 587
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%), Gaps = 1/80 (1%)
Frame = +3
Query: 776 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 834
RG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 345 RGASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 524
Query: 835 SDYNIQKESTLHLVLRLRGG 854
SDYNIQKESTLHLVLRLRGG
Sbjct: 525 SDYNIQKESTLHLVLRLRGG 584
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/63 (93%), Positives = 62/63 (98%)
Frame = +3
Query: 565 LDVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 624
L+VE SD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
Sbjct: 399 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 578
Query: 625 GGM 627
GG+
Sbjct: 579 GGI 587
>00758
Length = 1050
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 627 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 687 IQKESTLHLVLRLRGG 702
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 703 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 762
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 763 IQKESTLHLVLRLRGG 778
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 779 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 838
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 839 IQKESTLHLVLRLRGG 854
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/62 (95%), Positives = 61/62 (98%)
Frame = +1
Query: 565 LDVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 624
L+VE SD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
Sbjct: 565 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 744
Query: 625 GG 626
GG
Sbjct: 745 GG 750
>03942
Length = 912
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/80 (93%), Positives = 77/80 (96%), Gaps = 1/80 (1%)
Frame = +1
Query: 624 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 682
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 394 RGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTL 573
Query: 683 SDYNIQKESTLHLVLRLRGG 702
SDYNIQKESTLHLVLRLRGG
Sbjct: 574 SDYNIQKESTLHLVLRLRGG 633
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/80 (93%), Positives = 77/80 (96%), Gaps = 1/80 (1%)
Frame = +1
Query: 700 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 758
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 394 RGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTL 573
Query: 759 SDYNIQKESTLHLVLRLRGG 778
SDYNIQKESTLHLVLRLRGG
Sbjct: 574 SDYNIQKESTLHLVLRLRGG 633
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/80 (93%), Positives = 77/80 (96%), Gaps = 1/80 (1%)
Frame = +1
Query: 776 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 834
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 394 RGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTL 573
Query: 835 SDYNIQKESTLHLVLRLRGG 854
SDYNIQKESTLHLVLRLRGG
Sbjct: 574 SDYNIQKESTLHLVLRLRGG 633
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/62 (91%), Positives = 60/62 (96%)
Frame = +1
Query: 565 LDVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 624
L+VE SD+IENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
Sbjct: 448 LEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 627
Query: 625 GG 626
GG
Sbjct: 628 GG 633
>34270
Length = 274
Score = 116 bits (290), Expect(3) = 2e-33, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 633 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 691
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 116 bits (290), Expect(3) = 2e-33, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 709 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 767
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 37.4 bits (85), Expect(3) = 2e-33, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 617 LHLVLRLRGGMQIFVK 632
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 37.4 bits (85), Expect(3) = 2e-33, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 693 LHLVLRLRGGMQIFVK 708
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 28.9 bits (63), Expect(3) = 2e-33, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 688 QKESTLHLVLRLRGGMQ 704
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
Score = 28.9 bits (63), Expect(3) = 2e-33, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 764 QKESTLHLVLRLRGGMQ 780
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
Score = 116 bits (290), Expect(3) = 2e-33, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 785 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 843
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 37.4 bits (85), Expect(3) = 2e-33, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 769 LHLVLRLRGGMQIFVK 784
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 28.9 bits (63), Expect(3) = 2e-33, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 840 QKESTLHLVLRLRGG 854
+K TLHLVLRLRGG
Sbjct: 218 RKSPTLHLVLRLRGG 262
Score = 100 bits (249), Expect(2) = 9e-24, Method: Composition-based stats.
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +1
Query: 565 LDVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 615
L+VE SD+IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 76 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 28.9 bits (63), Expect(2) = 9e-24, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 612 QKESTLHLVLRLRGGMQ 628
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
>08296
Length = 897
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = +1
Query: 627 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 127 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 306
Query: 687 IQKESTLHLVLRLRGGM 703
+ S LHLVL LRGG+
Sbjct: 307 VIGGSVLHLVLALRGGL 357
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = +1
Query: 703 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 762
M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 127 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 306
Query: 763 IQKESTLHLVLRLRGGM 779
+ S LHLVL LRGG+
Sbjct: 307 VIGGSVLHLVLALRGGL 357
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 57/76 (75%)
Frame = +1
Query: 779 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 838
M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 127 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 306
Query: 839 IQKESTLHLVLRLRGG 854
+ S LHLVL LRGG
Sbjct: 307 VIGGSVLHLVLALRGG 354
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 48/63 (76%)
Frame = +1
Query: 565 LDVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 624
+D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY + S LHLVL LR
Sbjct: 169 IDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYKVIGGSVLHLVLALR 348
Query: 625 GGM 627
GG+
Sbjct: 349 GGL 357
>02863
Length = 583
Score = 54.3 bits (129), Expect(2) = 1e-16, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1
Query: 631 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 675
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKH 459
Score = 54.3 bits (129), Expect(2) = 1e-16, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1
Query: 707 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 751
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKH 459
Score = 54.3 bits (129), Expect(2) = 1e-16, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1
Query: 783 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 827
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKH 459
Score = 50.8 bits (120), Expect(2) = 1e-16, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 674 KQLEDGRTLSDYNIQKESTLHLVLRLRG 701
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 453 KTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 50.8 bits (120), Expect(2) = 1e-16, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 750 KQLEDGRTLSDYNIQKESTLHLVLRLRG 777
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 453 KTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 50.8 bits (120), Expect(2) = 1e-16, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 826 KQLEDGRTLSDYNIQKESTLHLVLRLRG 853
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 453 KTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 50.8 bits (120), Expect(2) = 5e-12, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 598 KQLEDGRTLSDYNIQKESTLHLVLRLRG 625
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 453 KTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 38.9 bits (89), Expect(2) = 5e-12, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 568 EASDSIENVKAKIQDKEGIPPDQQRLIFAGKQ 599
E ++ +K +I DK+GI P+QQRL+FAGK
Sbjct: 364 EGGMTVGELKCQIYDKDGISPEQQRLVFAGKH 459
>24173
Length = 413
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 631 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 689
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 690 ESTLHLVLRLRG 701
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 707 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 765
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 766 ESTLHLVLRLRG 777
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 783 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 841
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 842 ESTLHLVLRLRG 853
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/58 (65%), Positives = 46/58 (79%)
Frame = -2
Query: 568 EASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 625
E ++ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI +STLHLV RLRG
Sbjct: 295 EGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITDDSTLHLVFRLRG 122
>25295
Length = 998
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 634 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 693
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 694 HLVLRLRGG 702
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 710 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 769
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 770 HLVLRLRGG 778
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 786 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 845
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 846 HLVLRLRGG 854
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = -2
Query: 570 SDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 626
+D+I +KAK+ + G+P +Q+L + G ++D TL+ YN +T+ L ++ RGG
Sbjct: 928 TDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATVQLQMKERGG 758
>14135
Length = 567
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 634 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 693
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 694 HLVLRLRGG 702
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 710 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 769
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 770 HLVLRLRGG 778
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 786 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 845
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 846 HLVLRLRGG 854
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +2
Query: 570 SDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 626
+D+I +KAK+ + G+P +Q+L + G ++D TL+ YN +T+ L ++ RGG
Sbjct: 221 TDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATVQLQMKERGG 391
>13753
Length = 812
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = -3
Query: 623 LRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 682
+R MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED L
Sbjct: 510 IRRIMQLFVHA--QQIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCL 337
Query: 683 SDYNIQKESTLHLVLRLRGG 702
S ++ STL + R+ GG
Sbjct: 336 S--TLEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = -3
Query: 699 LRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 758
+R MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED L
Sbjct: 510 IRRIMQLFVHA--QQIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCL 337
Query: 759 SDYNIQKESTLHLVLRLRGG 778
S ++ STL + R+ GG
Sbjct: 336 S--TLEDLSTLQVEQRMLGG 283
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = -3
Query: 775 LRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 834
+R MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED L
Sbjct: 510 IRRIMQLFVHA--QQIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCL 337
Query: 835 SDYNIQKESTLHLVLRLRGG 854
S ++ STL + R+ GG
Sbjct: 336 S--TLEDLSTLQVEQRMLGG 283
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = -3
Query: 565 LDVEASDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 624
+ VE ++++E+VKA ++++E + + + F G LED LS ++ STL + R+
Sbjct: 462 IGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--TLEDLSTLQVEQRML 289
Query: 625 GG 626
GG
Sbjct: 288 GG 283
>34268
Length = 463
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 627 MQIFVKTLTGKTITLDVEASDTIEN 651
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 703 MQIFVKTLTGKTITLDVEASDTIEN 727
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 779 MQIFVKTLTGKTITLDVEASDTIEN 803
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
>22667
Length = 1002
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 611 IQKESTLHLVLRLRGGMQ 628
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 687 IQKESTLHLVLRLRGGMQ 704
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 763 IQKESTLHLVLRLRGGMQ 780
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 839 IQKESTLHLVLRLRGG 854
IQKESTLHLVLRLRGG
Sbjct: 450 IQKESTLHLVLRLRGG 497
>17776
Length = 433
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = -2
Query: 186 NLDILQHNLNLYNQSQQILQLKEPQMFLEQILLFIDQIFFNLTSGSNKYLQQSSYYEQ 243
+LDIL+ + L++ S L + FL QI L ID +FF + S S K Y+EQ
Sbjct: 285 DLDILRDGIWLHDLSATSLLIN----FL*QIKLSIDCLFFVVFSASFKMTFFEKYHEQ 124
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00666640__99.m001583-hydroxyacyl-CoA_dehydrogenase,
_NAD_binding_domain
(296 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11398 154 5e-38
26296 73 1e-13
09274 61 5e-10
28195 44 6e-05
27359 35 0.042
25453 31 0.60
>11398
Length = 3234
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 166/301 (55%), Gaps = 5/301 (1%)
Frame = -2
Query: 1 MLFTKSIAK---FSSAANVKNFAVV-GAGQMGTGIAIVANKIGGLNVKIVDSTEKALSGS 56
+L+T S+A+ S N+ +VV GAG MG GIA V+ G + V + D + ++
Sbjct: 2633 VLWTDSLARRIPLESHRNLSRHSVVLGAGLMGAGIAQVSIDXG-MQVLLKDMNIQGVARG 2457
Query: 57 RKFTESWCDKEIAKNRMTSEEKHQMLSRFSYFTKLEDLNDADFVVEAVTEKFEVKKNIFT 116
+ + D ++ + +++S E+ ++S ++ D V+EAV E +K +
Sbjct: 2456 QDQVQKGLDAQVKRKKISSFERDSIISNLDPTITYDNFKSLDMVIEAVFEDINIKHKVIK 2277
Query: 117 TLDQITKPDTILASNTSSISLTKIAATTKRPEKVIGMHFMNPVPVMKLIEIIKGLQTSDE 176
++ + I ASNTS++ +T+IA +KRPEKVIGMH+ +PV M+L+EII +TS +
Sbjct: 2276 EVEALIPDHCIFASNTSALPITQIAEASKRPEKVIGMHYFSPVDKMQLLEIITTKKTSKD 2097
Query: 177 TLQTTLDLSHKLGKTTVLANDIPGFILNRTLMPYINEAVYALFEGVATVADIDQAMKLGT 236
T + +D+ + GK + D PGF R L P + EA+ L EGV+ +D+ + G
Sbjct: 2096 TTASAVDVGLRQGKVVITVGDGPGFYTTRILAPMLAEAIRLLQEGVSP-KQLDKLTRAG- 1923
Query: 237 NVPMGPLTLADFIGLDTCLLIMQVLHTELGDS-KYRPCPLLVNYVNAGYLGKKSGRGFYK 295
+P+G TLAD +G+D + + L G+ LL + V++ +LG+K+G+GFY
Sbjct: 1922 GLPVGVATLADEVGVDVAAHVAEDLGKAFGERFGGGDVNLLKDMVSSSFLGRKAGKGFYV 1743
Query: 296 Y 296
Y
Sbjct: 1742 Y 1740
>26296
Length = 856
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Frame = -3
Query: 84 RFSYFTKLEDLND----ADFVVEAVTEKFEVKKNIFTTLDQITKPDTILASNTSSISLTK 139
+FS + D+ + A F+ E + E K+ +F LD + +TIL+S+TS+ +
Sbjct: 740 QFSCISGTNDIKELAKGAIFIQECIPENLAWKQELFKKLDDVVDSNTILSSSTSTFLPSL 561
Query: 140 IAATTKRPEKVIGMHFMNPVPVMKLIEIIKGLQTSDETLQTTLDLSHKLGKTTV-LANDI 198
A K + H +NP + L+EI+ T E +Q T + ++G+ V L+ +I
Sbjct: 560 FTANLKHKHNTVVSHPVNPPYYVPLVEIVPAPWTKPEVVQKTRAIMDEIGQKPVTLSREI 381
Query: 199 PGFILNRTLMPYINEAVYALFEGVATVADIDQAMKLGTNVP---MGPLTLA 246
GF LNR +NE + G+ V DID M G + +GPL A
Sbjct: 380 EGFALNRIQYAILNETWRLVEAGILNVRDIDSVMSDGLGMRYAFLGPLETA 228
>09274
Length = 968
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 229 DQAMKLGTNVPMGPLTLADFIGLDTCLLIMQVLHTELGDSK-YRPCPLLVNYVNAGYLGK 287
D AMKLG PMGP LAD++GLDT IM+ + D+ ++ L+ V G LG
Sbjct: 1 DTAMKLGAGYPMGPFELADYVGLDTTKFIMEGWSEKYPDNALFQQSELVNKLVAEGKLGV 180
Query: 288 KSGRGFYKY 296
KSG GFY Y
Sbjct: 181 KSGEGFYSY 207
>28195
Length = 435
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 173 TSDETLQTTLDLSHKLGKTTVLAN-DIPGFILNRTLMPYINEAVYALFEGVATVADIDQA 231
T+ + L+ T + ++G++ V N ++PGF LNR INE + EGV + DID+
Sbjct: 8 TARDVLEKTRGVMERVGQSPVTLNKEVPGFALNRIQYAIINECWSMVKEGVLSPEDIDKV 187
Query: 232 MKLGTNVPMGPLTLADFIG 250
MK G +GP FIG
Sbjct: 188 MKDG----LGPRYA--FIG 226
>27359
Length = 490
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +3
Query: 9 KFSS----AANVKNFAVVGAGQMGTGIAIVANKIGGLNVKIVDSTEKALSGSR 57
+FSS AA +K+ V+G G MG+GIA VA G NV +VD +E L+ S+
Sbjct: 135 QFSSSSTMAAAIKHVTVIGGGLMGSGIAQVAAAT-GHNVVMVDQSEDILNKSK 290
>25453
Length = 469
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -3
Query: 114 IFTTLDQITKPDTILASNTSSISLTKIAATTKRPEKVIGMHFMNPVPVMKLIEIIKGLQT 173
I LD+ ++AS + + +A T K + + P+P KLIE+ K L+
Sbjct: 278 ICILLDREHNGPVLIASPAGGMDIETVAKETPEKIKTVPLDIGKPIPEAKLIEVAKFLEF 99
Query: 174 SDETLQTTLDLSHKL 188
+T++ D KL
Sbjct: 98 KGDTVKRCADEIQKL 54
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00487020__3680.m00128prolyl-tRNA_synthetase_family_protein
(691 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28731 154 8e-38
27596 142 3e-34
08695 138 8e-33
06461 39 0.006
31189 38 0.016
02169 33 0.44
02314 30 2.2
>28731
Length = 496
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 108/159 (67%), Gaps = 5/159 (3%)
Frame = -3
Query: 374 QDQYRRVYEELLAVPVIKGVKSENEKFPGAYFSSTIETCIPANGRAVQAATSHHLGQNFS 433
Q+ Y RVYE+L+A+PV++G K+E EKF F++T+E I ANGRA+Q ATSHHLGQNFS
Sbjct: 479 QELYARVYEDLMAIPVVRGHKTEKEKFAXGDFTTTVEAYISANGRAIQGATSHHLGQNFS 300
Query: 434 KMFDISFLDGE-KKKQYAYQTSWGLTTRTIGVMILYHGDDKGLVLPPLVASTQVVIVPII 492
KMF+I D E ++KQY YQ SWG+TTRTIGVM + HGD+ GLVLPP VA QVV+VP
Sbjct: 299 KMFEIVIEDPETQQKQYVYQNSWGITTRTIGVMTMVHGDNVGLVLPPRVACVQVVVVPCG 120
Query: 493 KTG----ADNERVLNXXXXXXXXXXXXGIRVQVDDRDNY 527
T AD + + + IR + D RDNY
Sbjct: 119 ITASLSEADTKSLYDACDKJAADLKGQDIRARADCRDNY 3
>27596
Length = 458
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
Frame = +3
Query: 396 ENEKFPGAYFSSTIETCIPANGRAVQAATSHHLGQNFSKMFDISFLDGEK-KKQYAYQTS 454
E EKF GA +++T+E I A GRA+Q ATSHHLGQNFSKMF++ F D E +K+Y YQ S
Sbjct: 3 EKEKFAGAAYTTTVEAYIAAAGRAIQGATSHHLGQNFSKMFEVVFDDPETGEKRYVYQNS 182
Query: 455 WGLTTRTIGVMILYHGDDKGLVLPPLVASTQVVIVP--IIKTGADNERVLNXXXXXXXXX 512
WG+TTRTIGV+ + HGD++GLVLPP VAS QVVIVP I D++R
Sbjct: 183 WGITTRTIGVLTMVHGDNQGLVLPPKVASVQVVIVPCGITVNLKDDDRKALYESCKDLEK 362
Query: 513 XXXGIRVQVDD---RDNYTSGWKFNHWEVKG 540
R Q R G KFNHWE+KG
Sbjct: 363 LLXRCRGQSQGRLPRKTTLPGGKFNHWELKG 455
>08695
Length = 861
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 78/95 (82%)
Frame = +1
Query: 196 TKLGIDVKKDQDLSEWYKQVITKSEMIEYYDISGCYILRPHAYAIWEIIQRFFDDIIKGF 255
T+LG++ KK+++LS+WY QVITKSEMIEYYDISGCYILR +Y+IWE I+ FFD IK
Sbjct: 577 TRLGLEAKKEENLSDWYSQVITKSEMIEYYDISGCYILRNWSYSIWEKIKDFFDAEIKKL 756
Query: 256 DVQNAYFPMFVTDKALNKEKEHVEGFSPEVAWVTR 290
V+N YFP+FV+ AL +EK H+E F+PEVAWVT+
Sbjct: 757 GVENCYFPIFVSHSALEREKTHIEDFAPEVAWVTK 861
>06461
Length = 1131
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Frame = -3
Query: 412 CIPANGRAVQAATSHHLGQNFSKMFDISFLDGEKKKQYAYQTSWGL-TTRTIGVMILYHG 470
C + ++ +LG +S +F+ +++D + + + +GL TR + +
Sbjct: 751 CELVEAKGIEVGHCFYLGTKYSSVFNATYMDDSESIKPIHMGCFGLGVTRILQATVEVLS 572
Query: 471 DDKGLVLPPLVASTQVVIVPIIKTGADNE---RVLNXXXXXXXXXXXXGIRVQVDDRDNY 527
++ L PPL+A QV I+P K G + R+ V +DDR +
Sbjct: 571 RERQLRWPPLMAPYQVCIIP-QKEGYQADACFRLAEELSDALCSLPHLAGEVLIDDRIKF 395
Query: 528 TSGWKFNHWEVKGIPLRFEIGQMDM-DKNQITAVW 561
+ G + G P +G+ + + N++ V
Sbjct: 394 SIGRRIYEASRLGYPYIIVVGKKALAETNEVEVVC 290
>31189
Length = 448
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -2
Query: 631 CEKAVKERSALESKGTENESGLSGSAKTLCIPNEQ-EPIAEGTKCF--SCGKPALKRVYW 687
CE A+K+ SA + E + AK LCIP Q + + T+C +C KPA +
Sbjct: 294 CEDAIKKDSARDVVVEEGAPAMG--AKGLCIPFTQPQQLPPATQCIHHACSKPAKYYTLF 121
Query: 688 GRSY 691
GRSY
Sbjct: 120 GRSY 109
>02169
Length = 983
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 382 EELLAVPVIKGVKSENEKFPGAYFSSTIETCIPANGRAVQAATSHHL 428
E LAV ++ G ++ +F GA I CIP+NG + A + HL
Sbjct: 229 EAFLAVGILVG---QDAQFSGAAALVAIVDCIPSNGTQLLAIATQHL 360
>02314
Length = 1099
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = -2
Query: 552 MDKNQITAVWRVN----SHKEAIPNESIIETTKLRLKEIQDLMLTNSKKKF 598
+ Q+ V+ +N +H+E IPN I T L +IQDL+ T+SKK+
Sbjct: 966 LQNQQLKHVYEINGYEHNHQECIPN--I*TTAH*FLAQIQDLLHTSSKKEM 820
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00648690__3677.m00011Ubiquitin_family_protein
(1252 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13455 155 8e-38
04017 155 1e-37
04649 154 3e-37
00758 153 4e-37
03942 149 6e-36
34270 119 3e-34
08296 98 2e-20
02863 55 2e-16
24173 84 4e-16
25295 48 2e-05
14135 47 4e-05
13753 46 1e-04
34268 42 0.002
22667 38 0.029
01082 33 1.0
33807 30 7.1
>13455
Length = 809
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/81 (93%), Positives = 78/81 (96%), Gaps = 1/81 (1%)
Frame = +3
Query: 1097 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 1155
RG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 345 RGASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 524
Query: 1156 SDYNIQKESTLHLVLRLRGGM 1176
SDYNIQKESTLHLVLRLRGG+
Sbjct: 525 SDYNIQKESTLHLVLRLRGGI 587
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/81 (93%), Positives = 77/81 (95%), Gaps = 1/81 (1%)
Frame = +3
Query: 1173 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 1231
RG MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 345 RGASMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 524
Query: 1232 SDYNIQKESTLHLVLRLRGGF 1252
SDYNIQKESTLHLVLRLRGG
Sbjct: 525 SDYNIQKESTLHLVLRLRGGI 587
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +3
Query: 1030 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 1089
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 375 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 554
Query: 1090 LHLVLRLRGGM 1100
LHLVLRLRGG+
Sbjct: 555 LHLVLRLRGGI 587
>04017
Length = 690
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/78 (94%), Positives = 76/78 (97%)
Frame = -1
Query: 1100 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1159
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 1160 IQKESTLHLVLRLRGGMQ 1177
IQKESTLHLVLRLRGG +
Sbjct: 162 IQKESTLHLVLRLRGGAK 109
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -1
Query: 1176 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1235
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 342 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 163
Query: 1236 IQKESTLHLVLRLRGG 1251
IQKESTLHLVLRLRGG
Sbjct: 162 IQKESTLHLVLRLRGG 115
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/72 (94%), Positives = 70/72 (97%)
Frame = -1
Query: 1030 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 1089
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 324 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 145
Query: 1090 LHLVLRLRGGMQ 1101
LHLVLRLRGG +
Sbjct: 144 LHLVLRLRGGAK 109
>04649
Length = 1590
Score = 154 bits (388), Expect = 3e-37, Method: Composition-based stats.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -2
Query: 1100 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1159
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 449 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
Query: 1160 IQKESTLHLVLRLRGG 1175
IQKESTLHLVLRLRGG
Sbjct: 269 IQKESTLHLVLRLRGG 222
Score = 154 bits (388), Expect = 3e-37, Method: Composition-based stats.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = -2
Query: 1176 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1235
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 449 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
Query: 1236 IQKESTLHLVLRLRGG 1251
IQKESTLHLVLRLRGG
Sbjct: 269 IQKESTLHLVLRLRGG 222
Score = 143 bits (360), Expect = 6e-34, Method: Composition-based stats.
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = -2
Query: 1030 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 1089
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 431 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 252
Query: 1090 LHLVLRLRGG 1099
LHLVLRLRGG
Sbjct: 251 LHLVLRLRGG 222
>00758
Length = 1050
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 1100 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1159
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 1160 IQKESTLHLVLRLRGG 1175
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/76 (97%), Positives = 75/76 (98%)
Frame = +1
Query: 1176 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1235
MQIFVKTLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 523 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 702
Query: 1236 IQKESTLHLVLRLRGG 1251
IQKESTLHLVLRLRGG
Sbjct: 703 IQKESTLHLVLRLRGG 750
Score = 137 bits (345), Expect = 2e-32, Method: Composition-based stats.
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +1
Query: 1030 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 1089
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 541 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 720
Query: 1090 LHLVLRLRGG 1099
LHLVLRLRGG
Sbjct: 721 LHLVLRLRGG 750
>03942
Length = 912
Score = 149 bits (377), Expect = 6e-36, Method: Composition-based stats.
Identities = 75/80 (93%), Positives = 77/80 (96%), Gaps = 1/80 (1%)
Frame = +1
Query: 1097 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 1155
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 394 RGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTL 573
Query: 1156 SDYNIQKESTLHLVLRLRGG 1175
SDYNIQKESTLHLVLRLRGG
Sbjct: 574 SDYNIQKESTLHLVLRLRGG 633
Score = 149 bits (377), Expect = 6e-36, Method: Composition-based stats.
Identities = 75/80 (93%), Positives = 77/80 (96%), Gaps = 1/80 (1%)
Frame = +1
Query: 1173 RGG-MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 1231
RGG MQIFVKTLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 394 RGGIMQIFVKTLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTL 573
Query: 1232 SDYNIQKESTLHLVLRLRGG 1251
SDYNIQKESTLHLVLRLRGG
Sbjct: 574 SDYNIQKESTLHLVLRLRGG 633
Score = 135 bits (340), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/70 (94%), Positives = 68/70 (97%)
Frame = +1
Query: 1030 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 1089
TLTGKTITL+VE SDTIENVKAK +DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 424 TLTGKTITLEVEPSDTIENVKAKSKDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 603
Query: 1090 LHLVLRLRGG 1099
LHLVLRLRGG
Sbjct: 604 LHLVLRLRGG 633
>34270
Length = 274
Score = 119 bits (297), Expect(3) = 3e-34, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 1106 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 1164
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 37.4 bits (85), Expect(3) = 3e-34, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 1090 LHLVLRLRGGMQIFVK 1105
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 29.3 bits (64), Expect(3) = 3e-34, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 1161 QKESTLHLVLRLRGGMQ 1177
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
Score = 119 bits (297), Expect(3) = 3e-34, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 1182 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 1240
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 37.4 bits (85), Expect(3) = 3e-34, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 1166 LHLVLRLRGGMQIFVK 1181
LHLVLRLRGGMQIFVK
Sbjct: 3 LHLVLRLRGGMQIFVK 50
Score = 28.9 bits (63), Expect(3) = 3e-34, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 1237 QKESTLHLVLRLRGG 1251
+K TLHLVLRLRGG
Sbjct: 218 RKSPTLHLVLRLRGG 262
Score = 119 bits (297), Expect(2) = 3e-29, Method: Composition-based stats.
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +1
Query: 1030 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 1088
TLTGKTITL+VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 52 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 228
Score = 29.3 bits (64), Expect(2) = 3e-29, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 1085 QKESTLHLVLRLRGGMQ 1101
+K TLHLVLRLRGG +
Sbjct: 218 RKSPTLHLVLRLRGGAK 268
>08296
Length = 897
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = +1
Query: 1100 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1159
M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 127 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 306
Query: 1160 IQKESTLHLVLRLRGGM 1176
+ S LHLVL LRGG+
Sbjct: 307 VIGGSVLHLVLALRGGL 357
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 57/77 (74%)
Frame = +1
Query: 1176 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1235
M I VKTLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY
Sbjct: 127 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYK 306
Query: 1236 IQKESTLHLVLRLRGGF 1252
+ S LHLVL LRGG
Sbjct: 307 VIGGSVLHLVLALRGGL 357
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 54/71 (76%)
Frame = +1
Query: 1030 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 1089
TLTGK I +D+E +D +E +K ++++KEGIPP QQRLIF+GKQ+ D +T DY + S
Sbjct: 145 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQMNDEKTAQDYKVIGGSV 324
Query: 1090 LHLVLRLRGGM 1100
LHLVL LRGG+
Sbjct: 325 LHLVLALRGGL 357
>02863
Length = 583
Score = 54.7 bits (130), Expect(2) = 2e-16, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1
Query: 1104 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 1148
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKH 459
Score = 54.7 bits (130), Expect(2) = 2e-16, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +1
Query: 1180 VKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 1224
+KTLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 325 LKTLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKH 459
Score = 50.8 bits (120), Expect(2) = 2e-16, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 1147 KQLEDGRTLSDYNIQKESTLHLVLRLRG 1174
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 453 KTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 50.8 bits (120), Expect(2) = 2e-16, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 1223 KQLEDGRTLSDYNIQKESTLHLVLRLRG 1250
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 453 KTLEDGRLLSDYNITDDSTLHLVLRLRG 536
Score = 52.8 bits (125), Expect(2) = 7e-16, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 1030 TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 1072
TLTGKT+ L E T+ +K +I DK+GI P+QQRL+FAGK
Sbjct: 331 TLTGKTVALTGEGGMTVGELKCQIYDKDGISPEQQRLVFAGKH 459
Score = 50.8 bits (120), Expect(2) = 7e-16, Method: Composition-based stats.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 1071 KQLEDGRTLSDYNIQKESTLHLVLRLRG 1098
K LEDGR LSDYNI +STLHLVLRLRG
Sbjct: 453 KTLEDGRLLSDYNITDDSTLHLVLRLRG 536
>24173
Length = 413
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 1104 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 1162
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 1163 ESTLHLVLRLRG 1174
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = -2
Query: 1180 VKTLTGKTIT-LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 1238
+KTLT + + L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYNI
Sbjct: 337 LKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYNITD 158
Query: 1239 ESTLHLVLRLRG 1250
+STLHLV RLRG
Sbjct: 157 DSTLHLVFRLRG 122
Score = 82.8 bits (203), Expect = 9e-16, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 6/75 (8%)
Frame = -2
Query: 1030 TLTGKTIT------LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 1083
+L KT+T L E T+ +K +I DK+GI P+QQRL+FAGKQLEDGR LSDYN
Sbjct: 346 SLNLKTLTRQERSALTWEGGVTVGELKCQIYDKDGISPEQQRLVFAGKQLEDGRLLSDYN 167
Query: 1084 IQKESTLHLVLRLRG 1098
I +STLHLV RLRG
Sbjct: 166 ITDDSTLHLVFRLRG 122
>25295
Length = 998
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 1031 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 1090
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 1091 HLVLRLRGG 1099
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 1107 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 1166
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 1167 HLVLRLRGG 1175
L ++ RGG
Sbjct: 784 QLQMKERGG 758
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = -2
Query: 1183 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 1242
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 964 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 785
Query: 1243 HLVLRLRGG 1251
L ++ RGG
Sbjct: 784 QLQMKERGG 758
>14135
Length = 567
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 1031 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 1090
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 1091 HLVLRLRGG 1099
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 1107 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 1166
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 1167 HLVLRLRGG 1175
L ++ RGG
Sbjct: 365 QLQMKERGG 391
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +2
Query: 1183 LTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 1242
L G+T+ + +DTI +KAK+ + G+P +Q+L + G ++D TL+ YN +T+
Sbjct: 185 LNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATV 364
Query: 1243 HLVLRLRGG 1251
L ++ RGG
Sbjct: 365 QLQMKERGG 391
>13753
Length = 812
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = -3
Query: 1096 LRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 1155
+R MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED L
Sbjct: 510 IRRIMQLFVHA--QQIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCL 337
Query: 1156 SDYNIQKESTLHLVLRLRGG 1175
S ++ STL + R+ GG
Sbjct: 336 S--TLEDLSTLQVEQRMLGG 283
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = -3
Query: 1172 LRGGMQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 1231
+R MQ+FV + T+ VE ++T+E+VKA ++++E + + + F G LED L
Sbjct: 510 IRRIMQLFVHA--QQIYTIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCL 337
Query: 1232 SDYNIQKESTLHLVLRLRGG 1251
S ++ STL + R+ GG
Sbjct: 336 S--TLEDLSTLQVEQRMLGG 283
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = -3
Query: 1037 TLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 1096
T+ VE ++T+E+VKA ++++E + + + F G LED LS ++ STL + R+
Sbjct: 465 TIGVEGAETVEDVKALVEERENVSAEDMAVYFGGSPLEDDVCLS--TLEDLSTLQVEQRM 292
Query: 1097 RGG 1099
GG
Sbjct: 291 LGG 283
>34268
Length = 463
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 1100 MQIFVKTLTGKTITLDVEASDTIEN 1124
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -2
Query: 1176 MQIFVKTLTGKTITLDVEASDTIEN 1200
MQIFVKTLT KTITL+VE DTIEN
Sbjct: 96 MQIFVKTLTCKTITLEVEPMDTIEN 22
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -2
Query: 1030 TLTGKTITLDVEASDTIEN 1048
TLT KTITL+VE DTIEN
Sbjct: 78 TLTCKTITLEVEPMDTIEN 22
>22667
Length = 1002
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 1084 IQKESTLHLVLRLRGGMQ 1101
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 1160 IQKESTLHLVLRLRGGMQ 1177
IQKESTLHLVLRLRGG++
Sbjct: 450 IQKESTLHLVLRLRGGIK 503
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 1236 IQKESTLHLVLRLRGG 1251
IQKESTLHLVLRLRGG
Sbjct: 450 IQKESTLHLVLRLRGG 497
>01082
Length = 807
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 656 VTHQIQIPLPVDYSLKNILGDVFYIVYNLNAVNQATL 692
+ + ++I + VDY N L D+FY+V++ + VNQ T+
Sbjct: 516 IRNSLEICIMVDYV*TNSLVDLFYLVFDFDCVNQLTI 626
>33807
Length = 488
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 887 HLFTSKLNSYRMESNYLIQNITQQLNTFYSIINKQNELSRQDQDSFNSLNNNLMQSNACL 946
HL+ +R E + ++ +Q LNTF S++ + +R Q+S+ ++N+ L C
Sbjct: 243 HLYNMLKTPHRXEMKHPSESPSQMLNTFMSLLTRLT-CARSGQESWRAVNHMLAFQAQCF 419
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01123950__3834.m00397ubiquitin-conjugating_enzyme
(151 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
31099 144 1e-35
21443 129 6e-31
37111 122 8e-29
02740 114 1e-26
14380 108 1e-24
04905 100 3e-22
34525 100 3e-22
02313 95 1e-20
18592 93 4e-20
12485 89 7e-19
02183 88 1e-18
13254 71 2e-17
19311 81 1e-16
38163 79 9e-16
39424 62 1e-10
05633 60 3e-10
34541 40 2e-07
20166 46 5e-06
29762 32 2e-04
10963 38 0.002
26740 37 0.003
21542 29 0.95
07212 26 5.1
>31099
Length = 748
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 88/141 (62%)
Frame = +2
Query: 8 IMKETQKLQTEQVPGIDVVPNKDNFRHFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPP 67
+ KE Q L + P D+F H+ I GP+ +PY GG+F + P YP PP
Sbjct: 107 LQKELQDLGRDPPANCSAGPVGDDFFHWQATIMGPNKSPYQGGVFFLTITFPADYPFKPP 286
Query: 68 KVIFCTKIYHPNIDNLGRICLDILKDKWSPALQIRSVLLSIQALLSSPNPDDPLNNEAAE 127
KV F TKIYHPNI++ G ICLDIL+ +WSPAL I VLLSI +LL+ PNPDDPL E A
Sbjct: 287 KVAFTTKIYHPNINSNGSICLDILRSQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAR 466
Query: 128 QWKNDEQNALKKAKEYTQKYA 148
+KND + KE+TQKYA
Sbjct: 467 VYKNDRHKYEQLGKEWTQKYA 529
>21443
Length = 610
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 85/142 (59%)
Frame = -1
Query: 7 RIMKETQKLQTEQVPGIDVVPNKDNFRHFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNP 66
RI KE Q L + P ++ + I GP ++ Y GG+F + P YP P
Sbjct: 523 RINKELQDLGKDPPAQCSAGPVGEDMFQWQATIMGPRDSAYEGGVFFLTISFPTDYPFKP 344
Query: 67 PKVIFCTKIYHPNIDNLGRICLDILKDKWSPALQIRSVLLSIQALLSSPNPDDPLNNEAA 126
PKV F T+IYHPNI++ G ICLDIL+ +WSPAL I VLLSI ++L+ PNPDDPL E A
Sbjct: 343 PKVSFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSMLTDPNPDDPLVPEIA 164
Query: 127 EQWKNDEQNALKKAKEYTQKYA 148
+K D + + AK +T KYA
Sbjct: 163 RIYKTDREKFYENAKIWTNKYA 98
>37111
Length = 611
Score = 122 bits (305), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Frame = -1
Query: 34 HFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPPKVIFCTKIYHPNIDNL-GRICLDILK 92
H +I GP TPY GG F ++ +PE YP NPP V F TKI+HPN+ ++ G ICLDILK
Sbjct: 392 HLKGEIMGPPETPYEGGRFELDIRIPETYPFNPPLVKFLTKIWHPNVSSVTGAICLDILK 213
Query: 93 DKWSPALQIRSVLLSIQALLSSPNPDDPLNNEAAEQWKNDEQNALKKAKEYTQKYATG 150
D+W+ A+ +R+VLLS+QAL+++ PDDP + A Q+K+ + K A+ +T +A G
Sbjct: 212 DQWAAAMTLRTVLLSLQALMAAAEPDDPQDAVVANQYKDHRELFNKTARHWTSAFAQG 39
>02740
Length = 2287
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Frame = -1
Query: 7 RIMKETQKLQTEQVPGIDVVPNKDNFRHFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNP 66
R+ +E + L PG+ P+ DN + I+G T Y G + L P YP
Sbjct: 1993 RLQQELRTLMMSSDPGVSAFPDGDNLFKWVGTIEGAKGTVYEGLQYKLVLEFPSGYPYQA 1814
Query: 67 PKVIFCTKIYHPNIDNLGRICLDILKDKWSPALQIRSVLLSIQALLSSPNPDDPLNNEAA 126
V F T +HPN+DN G ICLDILK+KWS +R+VLLSIQ+LL+ PN PLN AA
Sbjct: 1813 VSVRFSTPCFHPNVDNHGNICLDILKEKWSALYDVRTVLLSIQSLLAEPNNVSPLNXHAA 1634
Query: 127 EQWKNDEQNALKKAKEY-TQKY 147
E WKN + KEY QKY
Sbjct: 1633 ELWKNQD-----AYKEYLLQKY 1583
>14380
Length = 1522
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 77/131 (58%)
Frame = +3
Query: 18 EQVPGIDVVPNKDNFRHFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPPKVIFCTKIYH 77
E G + N ++ I+GP TPYAGG+F +L+L + +P PPK F TKI+H
Sbjct: 156 ECARGNKIFTNDEDITDIQATIEGPAGTPYAGGLFRMKLVLSKSFPSEPPKAFFITKIFH 335
Query: 78 PNIDNLGRICLDILKDKWSPALQIRSVLLSIQALLSSPNPDDPLNNEAAEQWKNDEQNAL 137
PN+ + G IC++ LK W P L I+ +LL+++ LL PNP+ LN EA + ++
Sbjct: 336 PNVASNGEICVNTLKRDWKPELGIKHILLTVKCLLIVPNPESALNEEAGKLLLEQYEDYS 515
Query: 138 KKAKEYTQKYA 148
+AK +T+ +A
Sbjct: 516 MRAKMFTEIHA 548
>04905
Length = 1868
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Frame = -1
Query: 35 FYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPPKVIFCTKIYHPNIDNL-GRICLDILKD 93
F VK GP +TPY GG++ + LPE+YP P + F +IYHPNID + G +CLD++
Sbjct: 1682 FTVKFFGPPSTPYEGGVWKVRVDLPERYPFKSPSIGFINRIYHPNIDEVSGTVCLDVINQ 1503
Query: 94 KWSPALQIRSVLLS-IQALLSSPNPDDPLNNEAAEQWKNDEQNALKKAKEYTQKYAT 149
W+ + ++ S + LL+ PNP DPLN +AA + + KK +EY QK+AT
Sbjct: 1502 AWTALYDLSNIFESFLPQLLTYPNPVDPLNGDAAALYLHRPDEYKKKVEEYVQKFAT 1332
>34525
Length = 561
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
Frame = -1
Query: 54 AELLLPEQYPMNPPKVIFCTKIYHPNIDNLGRICLDIL----KDKWSPALQIRSVLLSIQ 109
+ L+LPE+YP PPKV F T IYHPNIDN GRICLD L K W P + + +VL S+Q
Sbjct: 384 SHLILPERYPFEPPKVQFTTPIYHPNIDNAGRICLDTLKMPPKGAWKPCMNLMTVLTSLQ 205
Query: 110 ALLSSPNPDDPLNNEAAEQWKNDEQNALKKAKEYTQKYA 148
L+++PNPDD L + A ++K+ + +KA ++T+++A
Sbjct: 204 LLMATPNPDDALMADIASEFKHTPELFRQKAVQFTKQHA 88
>02313
Length = 891
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Frame = -1
Query: 2 AGPTPRIMKETQKLQTEQVPGIDV-VPNKDNFRHFYVKIQGPDNTPYAGGIFTAELLLPE 60
G + E +K+Q E V G V + N DN + V I GP T Y GG F A + P
Sbjct: 771 GGAVKALQLELKKIQAEPVEGFRVKLINDDNIFEWEVAIFGPPGTLYEGGYFKAHMKFPA 592
Query: 61 QYPMNPPKVIFCTKIYHPNIDNLGRICLDIL-------------KDKWSPALQIRSVLLS 107
YP +PP V F TK++HPN+ G +C+ IL ++W+P +R++LLS
Sbjct: 591 DYPYSPPSVRFITKMWHPNVYENGEVCISILHPPVDDPQSGELPSERWNPTQTVRTILLS 412
Query: 108 IQALLSSPNPDDPLNNEAAEQWKNDEQNALKKAKEY 143
I +LL+ PN P N +A+ ++ ++ K KEY
Sbjct: 411 IISLLNEPNTYSPANVDASVMYRK-WKDTXGKEKEY 307
>18592
Length = 475
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Frame = +2
Query: 5 TPRIMKETQKLQTEQVPGIDVVPNKD--NFRHFYVKIQGPDNTPYAGGIFTAELLLPEQY 62
T R+ KE Q ++ E + ++D N H+ V + P+N PY G FT ++ P +Y
Sbjct: 95 TRRLTKELQDIRKEASQKAFRIKDQDESNILHWEV-VLVPENPPYNKGTFTVDINFPAEY 271
Query: 63 PMNPPKVIFCTKIYHPNIDNLGRICLDILK-DKWSPALQIRSVLLSIQALLSSPNPDDPL 121
P PPKV F TKIYHPN+D G++CL I+ + W PA + VL ++ L++ P P+ PL
Sbjct: 272 PFKPPKVTFKTKIYHPNVDEKGQVCLPIISAENWKPATKTDQVLTALIGLINEPEPEHPL 451
Query: 122 NNEAAEQW 129
+ AE++
Sbjct: 452 RADLAEEY 475
>12485
Length = 652
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Frame = +1
Query: 35 FYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPPKVIFCTKIYHPNIDNL-GRICLDILKD 93
F VK GP +TPY GG++ + LPE+YP P + F +IYHPNID + G +CLD++
Sbjct: 13 FLVKFYGPPSTPYEGGVWKVRVDLPEKYPFKSPSIGFMNRIYHPNIDEVSGTVCLDVINQ 192
Query: 94 KWSPALQIRSVLLS-IQALLSSPNPDDPLNNEAAEQWKNDEQNALKKAKE 142
W+ + ++ S + LL+ PNP DPLN +AA + + ++ KK+
Sbjct: 193 AWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAALYLHKPEDYKKKSSR 342
>02183
Length = 1456
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 7/148 (4%)
Frame = -2
Query: 8 IMKETQKLQTEQVPGIDVVPNKDNFRHFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPP 67
++KE Q+++ V + + H ++ PD + GG F ++ +PE+Y + PP
Sbjct: 1278 LVKEVQEMEENMPRTCKVQFDDPSVLHHFILNVTPDEGYWTGGKFKFDINVPEEYNIVPP 1099
Query: 68 KVIFCTKIYHPNIDNLGRICLDILKDK------WSPALQIRSVLLSIQALLSS-PNPDDP 120
K + TKI+HPNI G ICL +L+ W+P +++ V+ + +L S N +DP
Sbjct: 1098 KAVCHTKIWHPNITEAGEICLSLLRQNSYDGLGWAPTRRLKDVVWGLNSLFSDLLNFEDP 919
Query: 121 LNNEAAEQWKNDEQNALKKAKEYTQKYA 148
LN EAAE + D+++ K ++Y Q YA
Sbjct: 918 LNVEAAEHFARDKESFKIKVRDYIQAYA 835
>13254
Length = 870
Score = 70.9 bits (172), Expect(2) = 2e-17, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%)
Frame = +2
Query: 65 NPPKVIFCTKIYHPNIDNLGRICLDILKDKWSPALQIRSVLLSIQALLSSPNPDDPLNNE 124
N K IF TKI+HPN+ + G IC++ LK W P L I+ +LL+I+ LL PNP+ LN E
Sbjct: 164 NAAKGIFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEE 343
Query: 125 AAEQWKNDEQNALKKAKEYTQKYA 148
A + + ++A+ T+ +A
Sbjct: 344 AGKMLLERYDDYSQRARMMTEIHA 415
Score = 33.5 bits (75), Expect(2) = 2e-17, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 22 GIDVVPNKDNFRHFYVKIQGPDNTPYAGGIFTAELLLPEQY 62
GI V+ N+ + I GP TPYA GIF +L L + +
Sbjct: 37 GIKVIINESDVTDVQALIDGPAGTPYAVGIFRVKLTLSKDF 159
>19311
Length = 1071
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 59/109 (54%)
Frame = -2
Query: 40 QGPDNTPYAGGIFTAELLLPEQYPMNPPKVIFCTKIYHPNIDNLGRICLDILKDKWSPAL 99
QGP GG F L +P YPM PPKV F TKI+HPNI G + LD + WS AL
Sbjct: 488 QGPRAVRXKGGWFLLYLQIPHSYPMRPPKVRFITKIFHPNISRHGDVGLDSIHHNWSLAL 309
Query: 100 QIRSVLLSIQALLSSPNPDDPLNNEAAEQWKNDEQNALKKAKEYTQKYA 148
I VL+SIQ++L+ P + + ++ + + A+ +T KYA
Sbjct: 308 TISKVLISIQSVLTDPYCHVCMEPKIGALYQRAKPEFERIARRWTWKYA 162
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 34 HFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPPKVIF 71
H+ I GP +PY GG+ +A P Q + F
Sbjct: 507 HWQASITGPQGSPYXGGLVSALSADPTQLSYETTQGAF 394
>38163
Length = 2214
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Frame = -3
Query: 7 RIMKETQKLQTEQVPGIDVVPNKD-----NFRHFYVKIQGPDNTPYAGGIFTAELLLPEQ 61
R+ +E + + + G P K+ N ++ KI G T + GG+F+ +L E
Sbjct: 1765 RLAEERKSWRKDHPFGFVAKPTKNPDGTLNLFNWECKIPGKKGTMWEGGLFSLRMLFKED 1586
Query: 62 YPMNPPKVIFCTKIYHPNIDNLGRICLDILKDK--WSPALQIRSVLLSIQALLSSPNPDD 119
YP PPK F ++HPN+ G +CL +L ++ W PA+ I+ +LL IQ LL+ N D
Sbjct: 1585 YPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAVTIKQILLGIQELLNECNVKD 1406
Query: 120 PLNNEAAEQWKNDEQNALKKAKEYTQKY 147
P EA + + ++ + + K+
Sbjct: 1405 PAQAEAYTIYCQNSSEYERRVRAQSLKF 1322
>39424
Length = 1749
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Frame = -2
Query: 59 PEQYPMNPPKVIFCTKIYHPNIDNLGRICLDIL-------------KDKWSPALQIRSVL 105
P+ P+ PK+ F ++++HPNID G +C+ IL ++W P + ++L
Sbjct: 1514 PKNIPIGRPKMKFVSEMWHPNIDPEGNVCISILHEPGDDKYGYEKASERWLPIHTVETIL 1335
Query: 106 LSIQALLSSPNPDDPLNNEAAEQWKNDEQNALKKAKEYTQKYATG 150
+S+ ++L+ PN + P N +AA+ W+ + K+ ++ G
Sbjct: 1334 VSVISMLADPNDESPANVDAAKMWREQPEEFKKRVSRCVRRSQDG 1200
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -1
Query: 28 NKDNFRHFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPPKVIFCTK 74
+ D+ + V I GP T + GG F A L+ P++YP PPK C +
Sbjct: 1608 DDDDVYKWEVLIYGPPETLFDGGYFKAHLIFPKEYPNRPPKNEVCIR 1468
>05633
Length = 1150
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 37 VKIQGPDNTPYAGGIFTAELLLPEQYPMNPPKVIFC--TKIYHPNIDNLGRICLDILKDK 94
V ++G T Y G F +YP + P+V F HP++ + G ICL IL +
Sbjct: 51 VDLEGATGTLYEGEKFQLHFKFGAKYPFDSPQVTFLGPNIPIHPHVYSNGHICLSILTED 230
Query: 95 WSPALQIRSVLLSIQALLSS 114
WSPAL ++SV LSI ++LSS
Sbjct: 231 WSPALSVQSVCLSIVSMLSS 290
>34541
Length = 491
Score = 40.4 bits (93), Expect(2) = 2e-07, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 84 GRICLDILKDKWSPALQIRSVLLSIQALLSSPN 116
G ICLDIL+++WSP + ++L SIQ ++P
Sbjct: 59 GSICLDILQNRWSPTYDVSAILTSIQLCFTTPT 157
Score = 30.4 bits (67), Expect(2) = 2e-07, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 110 ALLSSPNPDDPLNNEAAEQWKNDEQNALKKAK 141
ALL PNP+ P NNEAA+ ++ + + K+ +
Sbjct: 136 ALLHDPNPNSPANNEAAQLFRENRREYEKRWR 231
>20166
Length = 446
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +1
Query: 31 NFRHFYVKIQGPDNTPYAGGIFTAELLLPEQYPMNPPKVIFCTKIYHPNIDNLGRICLDI 90
N + I GP TPY G I+T + P YP +PP V F TKI +++ G + L
Sbjct: 43 NLESWQGTIIGPMKTPYEGRIYTLRMSCPMSYPRHPPSVRFETKINLSCVEDNGTVDLKR 222
Query: 91 LKDK--WSPALQIRSVLLSIQALLSS 114
L K W ++ +L I+ ++S
Sbjct: 223 LGRKFAWDSNTTLKVILEEIRNCMAS 300
>29762
Length = 460
Score = 31.6 bits (70), Expect(2) = 2e-04, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 84 GRICLDILKDKWSPALQIRSVLLSIQ 109
G +CL+IL++ W P L + S++ +Q
Sbjct: 426 GNVCLNILREDWKPVLTVNSIVYGLQ 349
Score = 28.5 bits (62), Expect(2) = 2e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = -1
Query: 115 PNPDDPLNNEAAEQWKND----EQNALKKAK 141
PNP+DPLN EAAE + + EQN K +
Sbjct: 334 PNPEDPLNKEAAEVLQTNRRLFEQNVSKSMR 242
>10963
Length = 569
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 68 KVIFCTKIYHPNIDNLGRICLDILKD 93
+V+F T+IYH NI++ G ICLDILK+
Sbjct: 486 QVVFKTRIYHCNINSQGAICLDILKE 563
>26740
Length = 404
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 37 VKIQGPDNTPYAGGIFTAELLLPEQYPMNPP 67
V I GP +TPYA G F ++ P+ YP +PP
Sbjct: 299 VLITGPSDTPYANGAFEFDVYFPQDYPNSPP 391
>21542
Length = 885
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 51 IFTAELLLPEQYPMNPPKVIF-CTKIYHPNIDNLGRICLDILKDKWSPALQIRSVLLSIQ 109
IFT+ L + ++ +N +F C+ Y+ + N +CL I K +WS QI +L+SI
Sbjct: 446 IFTSHLNMSKK--INMTSSLFPCSWCYYVAVTN--SLCLVISKIEWSDMNQIVHILISIA 613
Query: 110 ALLSSP 115
+ +P
Sbjct: 614 NISWTP 631
>07212
Length = 1355
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 75 IYHPNIDNLGRICLDILKDKWSPALQIRSVLLSIQALLSSPN 116
+YHP +DNL + +L+ + L+I +++ S Q + N
Sbjct: 1090 LYHPGVDNLVTLHHYLLRHTVA*TLEIYTIVFSHQLTIVKQN 1215
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00030190__3825.m02637malate_dehydrogenase_family_protein
(349 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06101 145 3e-35
01641 94 1e-19
>06101
Length = 1773
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 170/361 (47%), Gaps = 18/361 (4%)
Frame = +2
Query: 2 ISKLFQNTAKSLTAVNSASFSHHHHKAPVRVAVTGAAGNIGYALVFRIASGELLGKDQPV 61
+ K+ Q + + ++ H P+ V +TGA YAL+ I+SGE+ G + +
Sbjct: 200 MRKIGQENSTTKREIDEEDTQHRDMSTPLHVCITGAESPACYALISSISSGEVFGPNTEI 379
Query: 62 ILQLIELPHAQ-NALKGVAMELNDCAFPLLRDIVTTDSQSVGFKNADYALLVGSKPRGKG 120
L+L + A ++GVAME D L+R I F++ +++ + +
Sbjct: 380 NLRLFDTSXADVTRIRGVAMETLDLCDGLVRGIEVVQDTKSAFQDCSVIVVLDELTQKED 559
Query: 121 QERADLIKDNGKIFVDTGKAINDNASRDCKVLVVGN-PANTNCLIAAHYAKDIPKENFTA 179
+ I+ N +F K IND A ++ +VLV GN P N N ++ A IP++N A
Sbjct: 560 ESFDMWIQRNCTVFSAYAKVINDVAKKNVRVLVAGNGPVNFNAMMMIENAPKIPRQNIVA 739
Query: 180 MTRLDHDRALYQLASKTGSQVTDIKKLCIWGNHSPTMYPDLTNTTVHN------------ 227
++R +RA + + + L +WGN + Y D + + VH
Sbjct: 740 LSRGVENRAKAVIGQRLSVNTAGVVDLIVWGNVNGKHYIDNSKSRVHGYDGAVWGPPSYS 919
Query: 228 -KLVAPTLDHAWIDTFFNPKVGKRGAEIIDARGXXXXXXXXXXXINHVRDWALGSE--DW 284
+V D+ W++ + +V +R + A G + W GS
Sbjct: 920 VPVVEMVHDNKWLEKEYLEQVQQRQETVETALGHSTAASAARAIATMLSHWWSGSPLTQM 1099
Query: 285 VSMGVPSDGSYNVPKGLVFSFPVT-TKNGKYSIVQGLKISEYSQKKIDITTKELLEERAC 343
S+ V S+G Y +P+GLVFSFPVT + G +++VQ +++SE +++K+ T K+L++ER
Sbjct: 1100FSLAVSSEGWYGIPEGLVFSFPVTLSPKGYWTVVQDIELSEETKQKLQETIKDLMKEREV 1279
Query: 344 V 344
+
Sbjct: 1280I 1282
>01641
Length = 647
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Frame = -2
Query: 226 HNKLVAPTLDHAWIDTFFNPK-VGKRGAEIIDARGXXXXXXXXXXXINHVRDWALGSE-- 282
H +L W F K V RGA +I AR +H+RDW G+E
Sbjct: 550 HQRLPGNIPRALWQRVFRKQKTVQTRGAAVIKARKLSSAMSAAKATADHMRDWWFGTEGD 371
Query: 283 DWVSMGVPSDGSYNVPKGLVFSFPVTTKNGKYSIVQGLKISEYSQKKIDITTKELLEER 341
WVSMGV SDGSY++ +GL++SFPV N K++IV+ L IS++++ K+D+T +EL ER
Sbjct: 370 KWVSMGVISDGSYDIDEGLMYSFPVRISNKKWTIVKDLDISDFARDKMDVTKEELKAER 194
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00825210__3683.m00015Ras_family_protein
(210 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08428 142 9e-35
34468 134 3e-32
26083 110 4e-25
17511 108 1e-24
14456 108 2e-24
33794 105 1e-23
05468 101 2e-22
19006 99 1e-21
33380 95 2e-20
01972 84 3e-20
33374 94 4e-20
11257 93 6e-20
30760 92 2e-19
13901 92 2e-19
07465 91 3e-19
32723 89 1e-18
07580 77 6e-18
13745 82 2e-16
01398 81 3e-16
11728 81 4e-16
01095 77 5e-15
35581 74 6e-14
26536 73 7e-14
13750 72 1e-13
27191 71 3e-13
12339 71 4e-13
19656 68 3e-12
31291 67 6e-12
00858 67 6e-12
34359 62 2e-10
29380 55 1e-08
34597 54 4e-08
14119 51 3e-07
25618 50 9e-07
09827 49 1e-06
14775 47 4e-06
33605 46 1e-05
00552 45 2e-05
10862 43 8e-05
08153 43 1e-04
11378 42 1e-04
10708 42 2e-04
25796 37 0.005
31928 37 0.006
06994 31 0.38
31932 31 0.44
>08428
Length = 1109
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Frame = -3
Query: 10 KLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQER 69
K+ ++G+SGVGKSS++LRF + S +TIG F ++L +D + QIWDTAGQE+
Sbjct: 1065 KVCLLGDSGVGKSSIVLRFVTGSYRPSQESTIGASFMSKSLVVDGAGYRFQIWDTAGQEK 886
Query: 70 FRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDLE-- 127
FR + YY+GA V+VYDVT +F+ + K WI E+ S+ N+ L + GNK DLE
Sbjct: 885 FRALAPMYYRGAAAAVIVYDVTRPRTFKSV-KSWIQELRSFGPPNIVLAIAGNKCDLEEL 709
Query: 128 KQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTLARKL 168
++V + AQEYA S + F E SA T+ +V++ F LAR+L
Sbjct: 708 REVVEKDAQEYASSISAIFGETSAMTAVNVEEMFTELARQL 586
>34468
Length = 1502
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 111/175 (63%), Gaps = 7/175 (4%)
Frame = +1
Query: 8 LFKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQ 67
+FK+++IG+S VGK+ L RF +F + TIGVDFR +++ +D + +KLQ+WDTAGQ
Sbjct: 493 IFKIIVIGDSNVGKTCLTYRFCLGKFPDKTEATIGVDFREKSIQVDSEHLKLQLWDTAGQ 672
Query: 68 ERFR-TITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESY-AEKNVELLLIGNKSD 125
ERFR ++ YY+ +V VYD+T +SF+++ WI E + + K + +L+GNK D
Sbjct: 673 ERFRKSMVQHYYRNVHAVVFVYDMTKMSSFENMPA-WIEECDRHNLTKYIPRILVGNKCD 849
Query: 126 LEKQVSTQT--AQEYAKSKNMEFFECSAK---TSDSVQQAFLTLARKLMNKKEQL 175
+ ++++ T AQ++A + NM FE SAK ++ V F+T+A KL K +
Sbjct: 850 VVERIAVNTNLAQKFADAHNMPLFETSAKDDEKANHVDAIFMTVAHKLKXSKPMM 1014
>26083
Length = 432
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 79/115 (68%)
Frame = +1
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQE 68
FKLV +G VGK+SL+ RF D F+ +Y TIG+DF +T+ ++ + ++LQ+WDTAGQE
Sbjct: 79 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 258
Query: 69 RFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNK 123
RFR++ +Y + + V+VYD+T+ NSF K WI +V + +V ++L+GNK
Sbjct: 259 RFRSLIPSYIRDSSVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIMLVGNK 420
>17511
Length = 483
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 84/122 (68%), Gaps = 3/122 (2%)
Frame = -3
Query: 8 LFKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQ 67
L K++I+G+SGVGK+SL+ ++ + +F+ Y TIG DF + + +D + V +QIWDTAGQ
Sbjct: 367 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 188
Query: 68 ERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKF---WISEVESYAEKNVELLLIGNKS 124
ERF+++ A+Y+GAD V+V+DVT N+F+ +D + ++ + +N ++IGNK
Sbjct: 187 ERFQSLGVAFYRGADCCVLVFDVTMPNTFRSLDSWRDEFLIQASPRDPENFPFVVIGNKI 8
Query: 125 DL 126
DL
Sbjct: 7 DL 2
>14456
Length = 1867
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 101/163 (61%), Gaps = 6/163 (3%)
Frame = -1
Query: 18 GVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQERFRTITSAY 77
GVGKSSL+ RF ++F+ TIGV+F + + +D + +QIWDTAGQERF+++ + +
Sbjct: 1111 GVGKSSLMNRFVSNKFDAQSFHTIGVEFLNKDVVVDDETYTMQIWDTAGQERFKSLRTPF 932
Query: 78 YKGADGIVMVYDVTSENSFQDIDKFWISEVESYAE----KNVELLLIGNKSDLE-KQVST 132
Y+GAD ++ + V S SF+++ W E YA+ +++GNK D+E +QV+
Sbjct: 931 YRGADCCLLTFSVDSMQSFRNL-SMWRKEFLYYADIQDGVTFPFVVLGNKIDVEGRQVTN 755
Query: 133 QTAQEYAKS-KNMEFFECSAKTSDSVQQAFLTLARKLMNKKEQ 174
+ A+ + + N +FE SAK + +V++AFL ++L ++Q
Sbjct: 754 EEARSWCTANSNAPYFETSAKDATNVEKAFLAAVQRLREVEDQ 626
>33794
Length = 779
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 87/131 (66%), Gaps = 2/131 (1%)
Frame = -1
Query: 43 VDFRFRTLPIDQKQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKF 102
V ++ T+ ++ K+VKLQIWDT+GQ RF TI +Y +GA GI++VYD+T++ SF ID+
Sbjct: 692 VAYKTTTILLEGKRVKLQIWDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDR- 516
Query: 103 WISEVESYAEKNVELLLIGNKSDL--EKQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQA 160
W+ EVE +A + +L+GN+ L ++QV+ + A+ YA NM FE S +++++
Sbjct: 515 WLKEVEEHAP-GIPKVLVGNRLHLAYKRQVAAKQAETYASRNNMSCFEISPLCDFNIRES 339
Query: 161 FLTLARKLMNK 171
F LAR +++
Sbjct: 338 FCELARMALHR 306
>05468
Length = 1558
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Frame = -3
Query: 6 DHLFKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQ-VKLQIWDT 64
+HL+K+++IG G GK+S++ R+ F++ Y TIGVDF + L D ++LQ+WD
Sbjct: 1547 EHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDADTLIRLQLWDI 1368
Query: 65 AGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAE----KNVELLLI 120
AGQERF +T YYK A G +V+DVT ++F + K W ++++S + V +L+
Sbjct: 1367 AGQERFGNMTRVYYKEAVGAFVVFDVTRASTFDAVTK-WKNDLDSKVQLADGSPVPCVLL 1191
Query: 121 GNKSDLEKQ-VSTQTAQ--EYAKSKN-MEFFECSAKTSDSVQQAFLTLARKLMNKKEQL 175
NK D K+ + T+Q E+ K + ++E SAK + ++ +A L +++ K +
Sbjct: 1190 ANKCDQAKEGLVNNTSQMDEFCSEKGFIGWYETSAKENINIDEAARFLVTRILEKDRAM 1014
>19006
Length = 568
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%)
Frame = -2
Query: 7 HLFKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAG 66
H KLVI+G+ GK+ LL+ FS DQF E Y+ T+ ++ + +D KQV+L +WDTAG
Sbjct: 441 HKEKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAG 265
Query: 67 QERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDL 126
QE + + Y D I+M + + S +S ++I + W EV + NV ++L+GNK DL
Sbjct: 264 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFC-PNVPIILVGNKKDL 88
Query: 127 EKQVSTQ 133
+T+
Sbjct: 87 RNDENTK 67
>33380
Length = 282
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 61/75 (81%)
Frame = +3
Query: 55 KQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKN 114
K+VKLQIWDTAGQER+RTIT+AYY+GA G +++YDVT+E SF + W +++++Y+ N
Sbjct: 54 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFNAVQD-WCTQIKTYSWDN 230
Query: 115 VELLLIGNKSDLEKQ 129
+++L+GNK DLE +
Sbjct: 231 AQVVLVGNKCDLEDE 275
>01972
Length = 2359
Score = 83.6 bits (205), Expect(2) = 3e-20, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 80/135 (59%)
Frame = +3
Query: 35 ESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSEN 94
+ Y+ T+GV+ + ++K +WDTAGQE+F + YY V+++DVTS
Sbjct: 381 KKYVATLGVEVHPLLFHTSRGKLKFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRV 560
Query: 95 SFQDIDKFWISEVESYAEKNVELLLIGNKSDLEKQVSTQTAQEYAKSKNMEFFECSAKTS 154
+++++ W ++ E N+ ++L GNK D++ + A + + KN+++++ SAK++
Sbjct: 561 TYKNVPN-WHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKAIVFHRKKNLQYYDISAKSN 734
Query: 155 DSVQQAFLTLARKLM 169
+ ++ FL LARKL+
Sbjct: 735 YNFEKPFLWLARKLV 779
Score = 31.6 bits (70), Expect(2) = 3e-20, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYL 38
FKLV++G+ GVGK++ + R +F ++ L
Sbjct: 304 FKLVLVGDGGVGKTTFVKRHVTGEFEKNML 393
>33374
Length = 489
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Frame = +1
Query: 45 FRFRTLPIDQKQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWI 104
F +T+ +D VK +IWDTAGQER+ ++ YY+GA ++VYD+T++++F K W+
Sbjct: 139 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRA-KTWV 315
Query: 105 SEVESYAEKNVELLLIGNKSDL--EKQVSTQTAQEYAKSKNMEFFECSAKTSDSV 157
E++ A N+ + L GNK+DL ++ V + AQ YA+ ++ F E SAKT+ +V
Sbjct: 316 KELQRQASPNIVIALAGNKADLANKRMVEFEEAQAYAEENSLLFMETSAKTAMNV 480
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = +2
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQ 60
FKLV++G S VGKSSL+LRF QF+E +TIG F R + +Q L+
Sbjct: 32 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF*LRQFVLMTQQSSLR 187
>11257
Length = 1102
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 84/132 (63%), Gaps = 6/132 (4%)
Frame = -2
Query: 52 IDQKQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYA 111
+D + +QIWDTAGQER++++ + +Y+G D ++ + V + S Q + W E +YA
Sbjct: 1041 VDGETFTMQIWDTAGQERYKSLRTPFYRGTDCCLLTFSVDNLKSLQSLSD-WYDEFVNYA 865
Query: 112 E----KNVELLLIGNKSDL-EKQVSTQTAQEYAKSK-NMEFFECSAKTSDSVQQAFLTLA 165
+ + ++IGNK+D+ E++VS++ A + ++ N+ +FE SAK S +VQQAFL +
Sbjct: 864 DIQDSASFPFVIIGNKADIEEREVSSEDAYNWCRTHGNLPYFETSAKDSLNVQQAFLAVV 685
Query: 166 RKLMNKKEQLNK 177
R+L EQ+++
Sbjct: 684 RRLREMDEQMDE 649
>30760
Length = 596
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 8/167 (4%)
Frame = -1
Query: 10 KLVIIGNSGVGKSSLLLRFSDD--QFNESYLTTIGVDF--RFRTLPIDQKQVKLQIWDTA 65
K ++ G+SGVGKSS+ F D F ++Y T GV+ + +P + QV+L ++D+A
Sbjct: 524 KCIVTGDSGVGKSSICQVFHSDSAHFPKNYSMTTGVEVLVKLVNIPDSRDQVELYLFDSA 345
Query: 66 GQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVEL--LLIGNK 123
G+E F + ++ +++VYDVT E SF + W+ V + A+ N + +L+ NK
Sbjct: 344 GKEIFSENVTKFWDQPSVVMVVYDVTDETSFSGCVR-WLERVRA-AKPNTVIPGVLVANK 171
Query: 124 SDLE--KQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTLARKL 168
+DL+ ++VS + ++ A+S +E+FECSAK + F LA
Sbjct: 170 TDLDERRRVSRKEGKDLAQSHGLEYFECSAKEMQNTDTPFFCLAHAF 30
>13901
Length = 962
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Frame = -3
Query: 8 LFKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPI-DQKQVKLQIWDTAG 66
LFK++IIG+ VGK+S + R+ +D F Y TIGVDF + + D+ +KLQ+WD AG
Sbjct: 288 LFKVIIIGDPTVGKTSFVQRYVNDSFRRDYKMTIGVDFALKVIRWSDKCNIKLQLWDIAG 109
Query: 67 QERFRTITSAYYKGADGIVMVYDVTSENSFQD 98
QERF ++T YYK A ++++D+T +N++Q+
Sbjct: 108 QERFTSMTRVYYKDAHACIVMFDLTQKNTYQN 13
>07465
Length = 1103
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +3
Query: 22 SSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQERFRTITSAYYKGA 81
SS++ R+ F + Y TIGVDF R + + + V+L +WDTAGQE F IT AYY+GA
Sbjct: 240 SSMIQRYCKGIFTKDYKKTIGVDFLERQIEVGGEDVRLMLWDTAGQEEFDAITKAYYRGA 419
Query: 82 DGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDL--EKQVSTQTAQEYA 139
V+ + +SF+ ++ W +VE + ++++ NK DL + V + A+ A
Sbjct: 420 QACVLAFSTVDRDSFEALET-WKRKVEDEV-GEIGMVIVQNKIDLIDDAVVRPEEAENLA 593
Query: 140 KSKNMEFFECSAKTSDSVQQAFLTLARKLMNKKEQLN 176
K + F+ S K + +V + F LA K ++ QLN
Sbjct: 594 KKLRLRFYRTSVKENMNVDEVFRYLADKYLH---QLN 695
>32723
Length = 384
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Frame = +2
Query: 67 QERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDL 126
QERFR+IT +YY+ A+ +++VYDV S+ S++ + + WI E+E YA V L+GNK D
Sbjct: 2 QERFRSITQSYYRSANALILVYDVCSQQSYESLPQ-WIHEIELYAGTKVLAFLVGNKIDQ 178
Query: 127 --EKQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTLARKL 168
++++ T +E+A+ M F E SAK +D+V++ F T+A +L
Sbjct: 179 TDKREIPTHIGKEFAERYEMRFLETSAKEADNVEKLFSTIAYQL 310
>07580
Length = 921
Score = 77.4 bits (189), Expect(2) = 6e-18, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Frame = +3
Query: 33 FNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTS 92
F E Y TI +R + + +D +Q L+I DTAG E+F + Y K G ++ Y +T+
Sbjct: 135 FVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFLLAYSITA 311
Query: 93 ENSFQDIDKFWISEVESYAEKNVELLLIGNKSDLEKQ--VSTQTAQEYAKSKNMEFFECS 150
+++F D+ + + +V +LL+GNK DLE + V Q A+S + F E S
Sbjct: 312 QSTFNDLQELREQILRVKDTDDVPMLLVGNKCDLEDERVVGKDQGQGLARSFSCAFLETS 491
Query: 151 AKTSDSVQQAFLTLARKLMNKK 172
AK +V + F+ L R++ NKK
Sbjct: 492 AKARINVNEIFMDLVRQI-NKK 554
Score = 29.6 bits (65), Expect(2) = 6e-18, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQF 33
+KLV++G+ GVGKS+L ++F F
Sbjct: 62 YKLVVLGSGGVGKSALTVQFVQGDF 136
>13745
Length = 1045
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 77/111 (69%), Gaps = 5/111 (4%)
Frame = +2
Query: 67 QERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKF---WISEVESYAEKNVELLLIGNK 123
QERF+++ A+Y+GAD V+VYDVT+ NSF+++D + ++ + ++ +++GNK
Sbjct: 2 QERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNK 181
Query: 124 SDLE-KQVSTQTAQEYAKSKN-MEFFECSAKTSDSVQQAFLTLARKLMNKK 172
DL+ +QVST+ AQ++ +SKN + ++E SAK +V+ AF T+A+ + ++
Sbjct: 182 VDLDNRQVSTRRAQQWCQSKNDIPYYETSAKEGINVEMAFQTIAKNALEQE 334
>01398
Length = 1421
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 87/151 (57%), Gaps = 7/151 (4%)
Frame = -2
Query: 67 QERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLI-GNKSD 125
QERFR+IT +YY+ + G+++VYD+T ++F+++ K W E ++ E + + L+ G+KSD
Sbjct: 1420 QERFRSITRSYYRNSVGVIIVYDITKRSTFENL-KQWYEEARNHIEPHKAIFLVLGHKSD 1244
Query: 126 LE--KQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTLAR----KLMNKKEQLNKPK 179
E +QV+ + + +A+ ++FFE SAK+ +++ F +A+ L + +L +
Sbjct: 1243 REDARQVTAREGRRFAEMHGLKFFETSAKSGHNIEDVFAQIAKDTYQHLQDGHIRLEEGW 1064
Query: 180 QYAPQGGSTQPRQNQSLSNRNNVQKQDKGCC 210
Q G +PR+ L+ ++ GCC
Sbjct: 1063 DGVKQ-GFARPRETVHLAE----GEESGGCC 986
>11728
Length = 635
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 15/160 (9%)
Frame = -1
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQE 68
K V++G+ VGK+ LL+ ++ + F Y+ T+ ++ + +D K + L +WDTAGQE
Sbjct: 488 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPINLGLWDTAGQE 312
Query: 69 RFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDL-- 126
+ + Y D ++ + + S SF+++ W EV S+ N ++L+G K DL
Sbjct: 311 DYDRLRPLSYPQTDVFLICFSLISPASFENVKAKWYPEV-SHHCPNTPIILVGTKLDLRE 135
Query: 127 ---------EKQVSTQT-AQEYAKSKNM---EFFECSAKT 153
EK+++ T Q A +K++ ++ ECSA T
Sbjct: 134 DKETIEKLKEKKLAPITYPQGLAMAKDIGAGKYLECSALT 15
>01095
Length = 1745
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Frame = -1
Query: 86 MVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDL--EKQVSTQTAQEYAKSKN 143
+VYD+T++++F K W+ E++ A N+ + L GNK+DL ++ V + AQ YA+ +
Sbjct: 1745 VVYDITNQDTFGRA-KTWVKELQRQASPNIVIALAGNKADLANKRMVEFEEAQAYAEENS 1569
Query: 144 MEFFECSAKTSDSVQQAFLTLARKLMNKKEQLNKPKQYAPQGGSTQPRQNQSLSNRNNVQ 203
+ F E SAKT+ +V FL +A+KL PK GG +QPRQ N Q
Sbjct: 1568 LLFMETSAKTAMNVNDIFLAIAKKL---------PKNEG--GGGSQPRQQGVRLNNEQSQ 1422
Query: 204 KQDKGCC 210
+ + GCC
Sbjct: 1421 QSEGGCC 1401
>35581
Length = 364
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Frame = +2
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQK-QVKLQIWDTAGQ 67
FK V++G++GVGK+ LL R + D+F +S LT++ T+ + + +WDTAGQ
Sbjct: 47 FKCVLLGDAGVGKTCLLNRLATDKFLDSPLTSLTTASLLTTVTLTSGVMASVDLWDTAGQ 226
Query: 68 ERFRTITSAYYKGADGIVMVYD 89
ER+R++TS+YY+ +++VYD
Sbjct: 227 ERYRSLTSSYYRDTKAVLIVYD 292
>26536
Length = 829
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Frame = +2
Query: 54 QKQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKF--WISEVESYA 111
+++V DTAGQE + ++ Y + DG ++VY VT SFQ+ + W++ +
Sbjct: 119 ERRVSWTFLDTAGQEEYSSMREHYTRSGDGFIVVYSVTDVTSFQEAEAVFRWLTRFQD-- 292
Query: 112 EKNVELLLIGNKSDL--EKQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTLARKL 168
E ++ +L GNK+DL +++V+ + ++ A M +FE SAKT D+V Q + L R +
Sbjct: 293 ETSIHAVLCGNKTDLTSDRKVTPEEGRKMADRLGMLYFETSAKTGDNVSQVYHGLLRSI 469
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFR 46
+K+V++G+ GVGKSSL +RF+ D F + Y TI +R
Sbjct: 488 YKIVMLGSGGVGKSSLTIRFTQDTFLDVYDPTIEDSYR 601
>13750
Length = 503
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 6/151 (3%)
Frame = -2
Query: 21 KSSLLLRFSDDQFNESYLTTIGVDF-RFRTLPIDQKQVKLQIWDTAGQERFRTITSAYYK 79
K+ LL R+ F + + TI V F D V+ +WDT G E +R++ ++++
Sbjct: 502 KTCLLRRYQKGFFMDRTMPTIAVLCSEFNESRTDPLNVRYTLWDTGGAETYRSLWVSHFR 323
Query: 80 GADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNV---ELLLIGNKSDLE--KQVSTQT 134
GA ++VYDVT E SF W + KN+ +++ +G+K+DLE + +ST+
Sbjct: 322 GAQVALLVYDVTCEWSFLTATTVWRKAL----MKNIPEAQVIFVGSKTDLEENRVISTER 155
Query: 135 AQEYAKSKNMEFFECSAKTSDSVQQAFLTLA 165
Q +A FFE S+ T +V F +A
Sbjct: 154 GQAFATQCGYTFFETSSVTGKNVDAVFWEIA 62
>27191
Length = 443
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 62/103 (60%)
Frame = +1
Query: 21 KSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQERFRTITSAYYKG 80
K+ L+ F + +FN+ Y T+GVD+ F+ ++ +++ +WD +G + + + Y G
Sbjct: 1 KTCLIKHFCESKFNQGYQPTVGVDYGFKIQTVNGVDMRVHMWDLSGSNEYLDVRNELYTG 180
Query: 81 ADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNK 123
+D I +V+DV++ SF+ +D W+ E+ +A + +++GN+
Sbjct: 181 SDAIFIVFDVSNTPSFEALDS-WLREINRFATGSPLNVIVGNR 306
>12339
Length = 578
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 80/134 (59%), Gaps = 8/134 (5%)
Frame = -2
Query: 67 QERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKF---WISEVESYAEKNVELLLIGNK 123
QERF+++ A+Y+GAD ++VYDVT +F +D + ++++ ++ ++IGNK
Sbjct: 577 QERFQSLGVAFYRGADCCILVYDVTEXKTFDSLDSWQREFLNQASPRDPEHFPFVVIGNK 398
Query: 124 SDLEKQVST-QTAQEYAKSK-NMEFFECSAKTSDSVQQAFLTLARKLMNKKEQL---NKP 178
DL+ +V T + Q + +K + +FE SAK + +V+QAF T+A+ + ++ ++ + P
Sbjct: 397 IDLDNRVVTAKRGQGWCSTKGGIPYFETSAKEAINVEQAFQTVAKNALAQESEVEIDDFP 218
Query: 179 KQYAPQGGSTQPRQ 192
+ ++PR+
Sbjct: 217 SEIRLSNDDSRPRE 176
>19656
Length = 428
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%)
Frame = +3
Query: 10 KLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQER 69
K V++G+ VGK+ LL+ ++ + F Y+ T+ ++ + +D + V L +WDTAGQE
Sbjct: 117 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGRPVNLGLWDTAGQED 293
Query: 70 FRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAE 112
+ + Y D ++ + V S SF++I W EV +
Sbjct: 294 YDRLRPLSYPQTDVFLLCFSVASPASFENIRAKWYPEVNHHCP 422
>31291
Length = 446
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Frame = -1
Query: 59 LQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELL 118
LQ+WDTAGQE + + Y D ++ + + SE S +++ W E+ + + +V ++
Sbjct: 446 LQLWDTAGQEDYDRLRPLAYPNTDVFMLXFSLMSEASMKNVKVKWYPEIRHH-DPHVPIV 270
Query: 119 LIGNKSDLEK--------------QVSTQTAQEYAKS-KNMEFFECSAKTSDSVQQAFLT 163
L+G K DL + VS+ + AK+ K +FECS+KT ++++ AF
Sbjct: 269 LVGTKLDLRQDKEAVRKLRSSRQDPVSSNQGNDLAKAIKAKRYFECSSKTQENLKTAFEE 90
Query: 164 LARKLMNKKEQLNK-PK 179
R +N Q NK PK
Sbjct: 89 TVRVALNMDGQNNKRPK 39
>00858
Length = 1658
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Frame = -2
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQE 68
+KLV++G GVGKS+L ++ + F E Y T D + + ID + L I DTAGQE
Sbjct: 1588 YKLVVVGAGGVGKSALTIQLXQNHFVEEYDPTXE-DSXRKQVVIDGETCLLDILDTAGQE 1412
Query: 69 RFRTITSAYYKGADGIVMVYDVTSENSFQDIDKF--WISEVESYAEKNVELLLIGNKSDL 126
+ + +G + V+ V + SF+DI+++ I V+ E V ++L+GNK DL
Sbjct: 1411 EXSAMRDQCMRTGEGFLCVFAVXNLKSFEDINQYREQIKRVKDADE--VPMVLVGNKVDL 1238
Query: 127 E-KQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTLARKL 168
+ V + + A+ ++ + E SAKT V AF TL R++
Sbjct: 1237 PIRNVEQRQGKHMAELYHIPYVETSAKTRQGVDDAFYTLVREI 1109
>34359
Length = 1042
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 78/156 (50%)
Frame = +3
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQE 68
FKLV++G ++++ R + Y+ T+GV+ + ++ +WDTAGQE
Sbjct: 54 FKLVLVGGRWEWANNIVKRHVTGS*KK-YVATLGVEVHPLQFNTSRGLLRFNVWDTAGQE 230
Query: 69 RFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDLEK 128
+F + YY ++++DVTS +++++ W ++ E N+ ++L GNK D++
Sbjct: 231 KFGGLRDGYYIQGTCAIIMFDVTSRVTYKNVPN-WHRDLVRVCE-NIPIVLCGNKVDIKD 404
Query: 129 QVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTL 164
+ A + + + + T+ SV +A TL
Sbjct: 405 RKVKAKAIVFHRKR-------TCSTTTSVPRATTTL 491
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 25/31 (80%)
Frame = +2
Query: 139 AKSKNMEFFECSAKTSDSVQQAFLTLARKLM 169
++ KN+++++ SAK++ + ++ FL LARKL+
Sbjct: 434 SQEKNLQYYDISAKSNYNFEKPFLWLARKLV 526
>29380
Length = 853
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = -2
Query: 81 ADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDLEKQ---VSTQTAQE 137
A ++VYDV ++F W+ E+ ++V ++L GNK DL Q VS + AQ
Sbjct: 852 ASAAIIVYDVNIADTFSRALA-WVKELRQQNTESVLIILAGNKVDLATQHRAVSFEDAQS 676
Query: 138 YAKSKNMEFFECSAKTSDSVQQAFLTLARKLMNKK 172
+A+ + F E SAKT +V + F+TLA +L+ ++
Sbjct: 675 FARENGLLFAEVSAKTGMAVNEIFMTLANQLIQQE 571
>34597
Length = 773
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Frame = -2
Query: 95 SFQDIDKFWISEVESYAEKNVELLLIGNKSDL--EKQVSTQTAQEYAKSKNMEFFECSAK 152
SF++I K W+ ++ +A ++VE +++GNK D+ ++ VS + + A+ ++ F E SAK
Sbjct: 709 SFENIVK-WLRNIDEHANEDVEKMILGNKCDMTDKRVVSKERGEAIAREHSIRFMETSAK 533
Query: 153 TSDSVQQAFLTLARKLMNK---KEQLNKPKQYAPQGGST 188
++ ++++AF LA +++K +E P++ G++
Sbjct: 532 SNINIERAFCELAEAILDKTAGRESAENPERVVIDRGNS 416
>14119
Length = 602
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Frame = +1
Query: 103 WISEVESYAEKNVELLLIGNKSDL---EKQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQ 159
W+ E+ +V ++L GNK+DL + VS A+ +A+ + F E SAKT +V +
Sbjct: 22 WVKELRQQNAGSVLIVLAGNKADLASEHRAVSADDARTFAEDNGLIFAEVSAKTGMAVSE 201
Query: 160 AFLTLARKLMNKKEQ 174
F+T+A KL+ + E+
Sbjct: 202 VFMTIAHKLVRRAEE 246
>25618
Length = 475
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Frame = +3
Query: 114 NVELLLIGNKSDL---EKQVSTQTAQEYAKSKNMEFFECSAKTSDSVQQAFLTLARKLMN 170
+V ++L GNK+DL + VS A+ +A+ + F E SAKT +V + F+T+A KL+
Sbjct: 75 SVLIVLAGNKADLASEHRAVSADDARTFAEDNGLIFAEVSAKTGMAVSEVFMTIAHKLVR 254
Query: 171 KKEQLNKPKQYAPQGGSTQPRQNQSLSNRNNVQKQDK------GCC 210
+ E+ GS Q R+ LS K GCC
Sbjct: 255 RAEEGQ---------GSXQGRERVRLSEAEEASGGCKC**IPIGCC 365
>09827
Length = 1201
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 5/169 (2%)
Frame = -3
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQE 68
+++++G GK+++L + + E T + F T ++ K + +WD GQ+
Sbjct: 1112 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQD 948
Query: 69 RFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDLEK 128
+ R + Y++ G++ V D + Q+ + + ++ LL+ NK DL
Sbjct: 947 KIRPLWRHYFQNTQGLIFVVDSNDKERVQEAREELTRMLNEDELRDAVLLVFANKQDLPH 768
Query: 129 QVSTQTAQE---YAKSKNMEFF--ECSAKTSDSVQQAFLTLARKLMNKK 172
++T E +N ++ A T D + + L+ +L N K
Sbjct: 767 AMATAEITEKLGLHGLRNRTWYIQSTCATTGDGLYEGLDWLSNQLKNNK 621
>14775
Length = 380
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Frame = -2
Query: 21 KSSLLLRFSDDQFNESYLTTIGVDF-RFRTLPIDQKQVKLQIWDTAGQERFRTITSAYYK 79
K+ LL R+ F + + TI V F D V+ +WDT G E +R++ ++++
Sbjct: 379 KTCLLRRYQKGFFMDRTMPTIAVLCSEFNESRTDPLNVRYTLWDTGGAETYRSLWVSHFR 200
Query: 80 GADGIVMVYDVTSEN--SFQDIDKFWISEVESYAEKNVE 116
GA ++VYDVT E +F + E S KNV+
Sbjct: 199 GAQVALLVYDVTCERGQAFATQCGYTFFETSSVTGKNVD 83
>33605
Length = 888
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +1
Query: 10 KLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQER 69
+L+++G GK+++L +FN + TI F ++ + KL +WD GQ+
Sbjct: 502 RLLMLGLDNAGKTTIL-----KKFNGEDIDTISPTLGFNIKTLEHRGFKLNVWDVGGQQS 666
Query: 70 FRTITSAYYKGADGIVMVYD 89
R+ Y++ DG+V V D
Sbjct: 667 LRSYWRNYFESTDGLVWVVD 726
>00552
Length = 455
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = -1
Query: 8 LFKLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQ 60
L K+V++G+ GVGKSSL+ RF ++F+ TIGV+F + + +D + +Q
Sbjct: 446 LLKVVLLGDGGVGKSSLMNRFVSNKFDAQSFHTIGVEFLTKDVVVDGETFTMQ 288
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = -3
Query: 61 IWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESY 110
IWDTAGQER++++ + +Y+G D ++ + V + S Q + W E +Y
Sbjct: 147 IWDTAGQERYKSLRTPFYRGTDCCLLTFSVDNLKSLQSLSD-WYDEFVNY 1
>10862
Length = 2896
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Frame = -3
Query: 55 KQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKN 114
++ + +WD GQ++ R + YY G G++ V D + + + + ++
Sbjct: 2492 QECQFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 2313
Query: 115 VELLLIGNKSDLEKQVSTQTAQE-----YAKSKNMEFFECSAKTSDSVQQAFLTLA 165
+L+ NK DL + QE + +N A T D + + L
Sbjct: 2312 AIILIFANKQDLPDAMKPHEIQEKLGLTRLRDRNWYVQPSCATTGDGLCEGLTWLT 2145
>08153
Length = 1703
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Frame = +1
Query: 10 KLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQER 69
+++++G GK+++L + + E T + F T ++ K + +WD GQ++
Sbjct: 88 RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQDK 252
Query: 70 FRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDLEKQ 129
R + Y++ G++ V D + + + ++ +L+ NK DL
Sbjct: 253 IRPLWRHYFQNTQGLIFVVDSNDRERINEAKEELARMLNEDDLRDAIILVFANKQDLPNA 432
Query: 130 VSTQTAQEYAKSKNME----FFECSAKTS-DSVQQAFLTLARKLMNK 171
S + N++ + + + TS D + + L+ L +K
Sbjct: 433 YSASEVTAHLGLANLKGRKWYMQATCATSGDGMYEGLEWLSTTLKHK 573
>11378
Length = 1688
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 17/173 (9%)
Frame = +3
Query: 10 KLVIIGNSGVGKSSLLLRFSDDQFNESYLTTIGVDFRFRTLPIDQKQVKLQIWDTAGQER 69
KLV +G GK++LL DD+ + T + + ++ +D G +
Sbjct: 327 KLVFLGLDNAGKTTLLHMLKDDKMAQHVPT-----LHPTSEELSMGGMRFTTFDLGGHRQ 491
Query: 70 FRTITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDLEKQ 129
R + Y+ DGIV + DV + S + N +L++GNK D
Sbjct: 492 ARRVWKDYFPAVDGIVFLVDVHDRERLVEAKAELDSLMTDEQVANAPILVLGNKIDKPGA 671
Query: 130 VSTQTAQEY-----------------AKSKNMEFFECSAKTSDSVQQAFLTLA 165
S + + + + ME F CS + F +A
Sbjct: 672 ASEEEIRHWFGLNSLTTGKGTVARGELPGRPMELFMCSVLKRQGYGEGFRWMA 830
>10708
Length = 2775
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = -2
Query: 55 KQVKLQIWDTAGQERFRTITSAYYKGADGIVMVYDVTSENSFQDI 99
+QV+L +WDTAGQE + + Y D I+M + + S +S ++I
Sbjct: 2729 QQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 2595
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Frame = -3
Query: 90 VTSENSFQDIDKFWISEVESYAEKNVELLLIGNKSDLE------------KQVSTQTAQE 137
+T+ +++ K W EV + NV ++L+GNK DL KQ + +
Sbjct: 2623 LTALTAWRTSLKKWTPEVRHFCP-NVPIILVGNKKDLRNDENTKRELMKMKQEPVRLDEG 2447
Query: 138 YAKSKNM---EFFECSAKTSDSVQQAFLTLARKLMNKKEQ 174
A S+ + + ECSAKT + V++ F T R + K++
Sbjct: 2446 RAMSEKINAYSYLECSAKTKEGVREVFETATRAALQTKKK 2327
>25796
Length = 422
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = -1
Query: 1 MIKDYDHLFKLVIIGNSGVGKSSLLLRF 28
M + YD+LFK +IIG++G GKS LL F
Sbjct: 89 MSETYDYLFKFLIIGSAGSGKSCLLHHF 6
>31928
Length = 429
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +2
Query: 58 KLQIWDTAGQERFRT---ITSAYYKGADGIVMVYDVTSENSFQDIDKFWISEVESYAEKN 114
K++I+DT T + Y DG V+VYD TS SF+ +DK +++ + +K
Sbjct: 107 KVRIFDTGAAALETTEGDLPKHYLNFPDGFVLVYDTTSWESFRRLDKLK-KDIDKHRDKR 283
Query: 115 -VELLLIGNK 123
V +++IGNK
Sbjct: 284 EVHMIVIGNK 313
>06994
Length = 429
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 9 FKLVIIGNSGVGKSSLLLRFSDDQFNE 35
+KLV++G+ GVGKS+L ++F F E
Sbjct: 57 YKLVVLGSGGVGKSALTVQFVQGIFVE 137
>31932
Length = 437
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -1
Query: 103 WISEVESYAEKNVELLLIGNKSDL-EKQVSTQTAQEYAKSKN-MEFFECSAKTSDSVQQA 160
W + V V LL+GNKSDL ++V ++ K + + + E S K + ++
Sbjct: 437 WTASVNWPYGSTVPCLLLGNKSDLGHREVEQDEIEDLCKEHDFLGWSETSVKDGTMIDES 258
Query: 161 FLTLARKLMNKKEQLNKPKQYAPQG 185
L ++M K +L + QG
Sbjct: 257 MNYLIEEMMAKHAELEGFSESVTQG 183
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00294640__3692.m00037NADH-
ubiquinone_oxidoreductase_23_kDa_subunit,_mitochondrial_precursor,
_putative
(324 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
23732 141 4e-34
28602 28 5.8
>23732
Length = 981
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 85/126 (67%), Gaps = 4/126 (3%)
Frame = +1
Query: 196 NYP--FEKGPLSPLFRGEHALRRYPT--GEERCIACKLCQSACPARAITIETEPRPDGSR 251
NYP +GPL + P G C+ + +CPA+AITIE EPR DGSR
Sbjct: 4 NYPPFGRRGPLRLXVSAGARSQALPVWGGALHCLQ-AV*GPSCPAQAITIEAEPRADGSR 180
Query: 252 RTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNYEQTAYLHEDLFYDKYKLLENGDKWEPQ 311
RT RYDIDMTKCIYCGFCQEACPVDAIVEGPN+E + E+L Y+K KLL NGDKWE +
Sbjct: 181 RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETREELLYNKEKLLSNGDKWEAE 360
Query: 312 IARNIE 317
IA N++
Sbjct: 361 IAANLQ 378
>28602
Length = 560
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 180 FWFCGIVYSFEPEWTINY-PFEKGPLSPLFR 209
+W C ++ P W IN F+K L PLF+
Sbjct: 295 YWHCSLLIQLLPTWIINIKKFKKCALKPLFQ 203
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00691900__3674.m00081EF_hand_family_protein
(191 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07678 139 6e-34
00167 132 9e-32
26849 70 2e-17
12671 65 2e-11
14945 42 2e-04
22063 41 2e-04
03732 37 0.004
14594 37 0.005
20611 31 0.39
18171 30 0.53
01773 30 0.53
15966 30 0.55
27864 30 0.71
20353 29 1.3
26019 28 1.9
12214 28 2.0
32917 28 3.0
19925 28 3.4
04697 27 4.1
17977 27 7.5
03299 26 8.4
>07678
Length = 958
Score = 139 bits (351), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 4/185 (2%)
Frame = +1
Query: 9 INRVRSALLSRNQNTIRGLARAFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQFVLH 68
+ ++R A L+R I+GLAR F+ +D D N +D EF + E G LT+ E V+
Sbjct: 271 VEKLRLACLARGAAGIKGLARKFKIMDD-DGNRSLDFKEFKKGITEFG--LTQFEGDVIQ 441
Query: 69 Q---CFDRNNEGTVDFDEFLCVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDLRGVYN 125
+ CFD++ GT+DFDEFL +R +++ RK ++ +AFQK D G V + DL+GVYN
Sbjct: 442 EMFTCFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYN 621
Query: 126 CDNHPKIKTGQMTEEQVFVEFLQNF-CDNSKDGKIQLKEWIDYYSAVSVSIQNDDHFEQV 184
HPK G+ TEE++ FL +F N KDGKI +E+ +YY VS S+ ND +F +
Sbjct: 622 VTKHPKYLNGEWTEERILRIFLDSFDSPNDKDGKITKEEFFNYYVGVSASVDNDAYFSLM 801
Query: 185 VKIAW 189
+K AW
Sbjct: 802 MKQAW 816
>00167
Length = 2176
Score = 132 bits (332), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 2/185 (1%)
Frame = +3
Query: 9 INRVRSALLSRNQNTIRGLARAFRQLDSYDRNNKVDRDEFFIVLKENGVS-LTKQEQFVL 67
+ R + L + I+ + R FR +D +R+ K+ DEF + +E ++ +T +E +
Sbjct: 681 VERFKCYALQQGCGAIKTIGRKFRIMDD-NRDRKLSVDEFIVGCRECRIAKMTSEELNEV 857
Query: 68 HQCFDRNNEGTVDFDEFLCVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDLRGVYNCD 127
+ FD++ GT+DF+EFL +R ++NE R+ +V KAF K D G + DL G Y+
Sbjct: 858 FRRFDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYDVR 1037
Query: 128 NHPKIKTGQMTEEQVFVEFLQNF-CDNSKDGKIQLKEWIDYYSAVSVSIQNDDHFEQVVK 186
+HP+ + G++T++QV+ EFL NF ++ DG I + EWIDYYS VS SI D +F V+
Sbjct: 1038SHPRYQNGELTKKQVYQEFLDNFVVGDNDDGVITMAEWIDYYSGVSASIDEDVYFGLVMY 1217
Query: 187 IAWGV 191
+WGV
Sbjct: 1218NSWGV 1232
>26849
Length = 649
Score = 70.1 bits (170), Expect(2) = 2e-17, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = +3
Query: 88 IRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDLRGVYNCDNHPKIKTGQMTEEQVFVEFL 147
+R ++E R ++ +AF K D + G + I D + Y+ +HP K+GQM+++++ +EFL
Sbjct: 354 LRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEFL 533
Query: 148 QNFCD--NSKDGKIQLKEWIDYYSAVSVSIQNDDHFE 182
+NF + DG + +E+ + Y+++S SI ND +F+
Sbjct: 534 KNFQAGVSDPDGVVNKEEFENXYASISASIDNDTYFD 644
Score = 35.0 bits (79), Expect(2) = 2e-17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +2
Query: 9 INRVRSALLSRNQNTIRGLARAFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQFVLH 68
I ++R LSR I GLARAFR +D D + + +EF + + + + + + +
Sbjct: 119 IYKLRLQCLSRGPTGILGLARAFRVMDK-DGSKVLSLEEFKKGILDMHIDINEADIEDMF 295
Query: 69 QCFDRNNEGTVDFDEFLCVI 88
FD + GT++ EFL +
Sbjct: 296 YRFDNDGNGTINMTEFLLKV 355
>12671
Length = 807
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Frame = -2
Query: 66 VLHQCF---DRNNEGTVDFDEFLCVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDLRG 122
VL Q F D + E +D+ F+ + G++NE RK +V KAF K D H G + + D++
Sbjct: 704 VLEQVFEIVDPDGERRLDYSFFMRTVLGQMNENRKGLVRKAFSKVDTHRQGSIHLSDIKK 525
Query: 123 VYNCDNHPKIKTGQMTEEQVFVEFLQNFCDNSKDGKIQLKEWIDYYSAVSVSIQNDDHFE 182
+N + + + + + FL ++K ++ E+ +YY +SV +Q D F
Sbjct: 524 FFNANCPYRPSSDADSTKSALQCFLDAVRCSAKQEEVSFIEFEEYYEGLSVGLQEDQDFA 345
Query: 183 QVVKIAWGV 191
+++ W +
Sbjct: 344 NILRNTWNI 318
>14945
Length = 1337
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 30 AFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQFVLHQCFDRNNEGTVDFDEFLCVIR 89
AF D+ D + +D E + ++ G K+E + D+ GT+DF++FL ++
Sbjct: 127 AFDLFDA-DGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTIMT 303
Query: 90 GELNEQ-RKAIVLKAFQKFDPHNTG 113
+++E+ K +LKAF+ FD TG
Sbjct: 304 QKMSEKDAKEEILKAFRLFDDDETG 378
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%)
Frame = +1
Query: 61 KQEQFVLHQCFDRNNEGTVDFDEFLCVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDL 120
KQE FD + GT+D E +R E +K + K + D TG ++ D
Sbjct: 109 KQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDF 288
Query: 121 RGVYNCDNHPKIKTGQMTEEQVFVEFLQNF 150
+ T +M+E+ E L+ F
Sbjct: 289 LTIM---------TQKMSEKDAKEEILKAF 351
>22063
Length = 688
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 30 AFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQFVLHQCFDRNNEGTVDFDEFLCVIR 89
AF D+ D + +D E + ++ G K+E + D+ GT+DF++FL ++
Sbjct: 186 AFDLFDA-DGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTIMT 362
Query: 90 GELNEQ-RKAIVLKAFQKFDPHNTG 113
+++E+ K +LKAF+ FD TG
Sbjct: 363 QKMSEKDAKEEILKAFRLFDDDETG 437
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%)
Frame = +3
Query: 61 KQEQFVLHQCFDRNNEGTVDFDEFLCVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDL 120
KQE FD + GT+D E +R E +K + K + D TG ++ D
Sbjct: 168 KQEIREAFDLFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDF 347
Query: 121 RGVYNCDNHPKIKTGQMTEEQVFVEFLQNF 150
I T +M+E+ E L+ F
Sbjct: 348 L---------TIMTQKMSEKDAKEEILKAF 410
>03732
Length = 1114
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = -1
Query: 36 SYDRNNK--VDRDEFFIVLKENGVSLTKQEQFVLHQCFDRNNEGTVDFDEFL--CVIRGE 91
SYDR+N +DR+E L G L+ + VL + FDR +GTV FD+F+ CV+
Sbjct: 877 SYDRDNSGSIDRNELKNALTGFGYRLSDRFFDVLVKKFDRQGKGTVAFDDFIQCCVVLQT 698
Query: 92 LNEQRKAIVLKAFQKFDPHNTGFVEI 117
L +F+ D G+++I
Sbjct: 697 LT--------TSFRTHDQDQDGWIQI 644
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = -1
Query: 27 LARAFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQF-VLHQCFDRNNEGTVDFDEFL 85
LA F+++D DR+ + +E L + E ++ FDR+N GT++F EF
Sbjct: 1096 LAGIFQRIDK-DRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEFQ 920
Query: 86 CVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDLR 121
+ + + Q F+ +D N+G ++ +L+
Sbjct: 919 ALWKYVTDWQ------NCFRSYDRDNSGSIDRNELK 830
>14594
Length = 1014
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Frame = +3
Query: 12 VRSALLSRNQNTIRGLA--------RAFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQE 63
VR +LL +Q I L AF D D + + E V++ G + T+ E
Sbjct: 378 VRHSLLIMSQEHIVTLTDEQVAEFKEAFSLFDK-DGDGTITTSELGTVMRSLGQNPTENE 554
Query: 64 QFVLHQCFDRNNEGTVDFDEFLCVIRGELNEQRKAIVLK-AFQKFDPHNTGFVEIRDLRG 122
+ D + GT+DF+EFL ++ ++ + L+ AF+ FD G++ +LR
Sbjct: 555 LQDMINEVDADGNGTIDFEEFLHMMARKMKDTDCEEELREAFRVFDKDGNGYISAAELR- 731
Query: 123 VYNCDNHPKIKTGQ-MTEEQVFVEFLQNFCDNSKDGKIQLKEWIDYYSA 170
H G+ +T+E+V E ++ D DG + +E++ +A
Sbjct: 732 ------HVMTNLGEKLTDEEV-DEMIKE-ADLDGDGMVNYEEFVTMMTA 854
>20611
Length = 391
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 75 NEGTVDFDEFLCVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDLRGVYNCDNHP 130
NEG + D+ LC+ +E + +V + F+ F HN G L G C +P
Sbjct: 381 NEGIIMTDDVLCIKGASRSEPQVTLVFQFFKNFLVHNWGMSSRLILVGF--CAGYP 220
>18171
Length = 1131
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = +3
Query: 74 NNEGTVDFDEFLCVIR---GELNEQRK-AIVLKAFQKFDPHNTGFVEIRDLRGVYNCDNH 129
+N+G VDF +FL ++ G + Q + +L+A D TG + LR V
Sbjct: 81 SNQGKVDFPDFLTLMARTVGSKDPQEEDDAMLEALTLLDKDQTGVISTALLRHVLTTLGD 260
Query: 130 PKIKTGQMTEEQVFVEFLQNFCDNSKDGKIQLKEWI 165
Q+T E+ VE L D + G++ KE+I
Sbjct: 261 ------QLTSEE--VEELIKEADKEETGQVDYKEFI 344
>01773
Length = 1950
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 24 IRGLARAFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQFVLHQCFDRNNEGTVDFDE 83
++ LA F+ D + +DRDE +L E+G T + + + D+NN+ + F+E
Sbjct: 364 VQKLAELFKAKDKSG-DGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEE 540
Query: 84 FL 85
F+
Sbjct: 541 FV 546
>15966
Length = 362
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 24 IRGLARAFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQFVLHQCFDRNNEGTVDFDE 83
++ LA F+ D + +DRDE +L E+G T + + + D+NN+ + F+E
Sbjct: 131 VQKLAELFKAKDKSG-DGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEE 307
Query: 84 FL 85
F+
Sbjct: 308 FV 313
>27864
Length = 343
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 27 LARAFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQFVLH-QCFDRNNEGTVDFDEFL 85
LA F+++D DR+ + +E L + E L FDR+N GT++F EF
Sbjct: 19 LAGIFQRIDK-DRSGNISVNELQQALSNGTWTPFNPETVRLMIGMFDRDNSGTINFQEFQ 195
Query: 86 CVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDLR 121
+ + + Q F+ +D N+G ++ +L+
Sbjct: 196 ALWKYVTDWQ------NCFRSYDRDNSGSIDRNELK 285
>20353
Length = 450
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 92 LNEQRKAIVLKAFQKFDPHNTGFVEIRDLRGV 123
LN + ++ + F KF PH+T F++I + + V
Sbjct: 274 LNIESVSLQVATFSKFQPHSTDFLDITNPKAV 369
>26019
Length = 1561
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = +2
Query: 27 LARAFRQLDSYDRNNKVDRDEFFIVLKENGVSLTKQEQFVLHQ----CFDRNNEGTVDFD 82
L + FR+LD D + + DEF +SL + +Q L Q FD + G VDF
Sbjct: 104 LGKRFRKLD-LDNSGSLSIDEF--------MSLPELQQNPLVQRVIDIFDTDGNGEVDFK 256
Query: 83 EFL-CVIRGELNEQRKAIVLKAFQKFDPHNTGFV 115
EF+ + + + +++ + AF+ +D G++
Sbjct: 257 EFIEGISQFSVKGDKESKLRFAFKIYDMDKDGYI 358
>12214
Length = 654
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = -3
Query: 71 FDRNNEGTVDFDEFLCVIRGELNEQRKAIVLKAFQKFDPHNTGFVEIRDLRGVY 124
FDR+ GT+D +EF + + +Q ++ F+++D + +G +E +L+ Y
Sbjct: 628 FDRDMSGTIDINEFQSLW--QYIQQWRS----TFERYDSNRSGSIEGNELQAAY 485
>32917
Length = 214
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 107 FDPHNTGFVEIRDLRGVYNCDNHPKI 132
F+PH F+ + + GVY C PKI
Sbjct: 133 FNPHLNVFIRVEKIGGVYICIVTPKI 210
>19925
Length = 427
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 105 QKFDPHNTGFVEIRDLRGVYNCDN 128
Q PH T F I ++ G+Y C+N
Sbjct: 350 QHTQPHQTQFTFISEVCGIYTCNN 279
>04697
Length = 559
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 101 LKAFQKFDPHNTGFVEIRDLRGVYNCDNHPKIKTGQMTEEQVFVEFLQNFCDNSKDGKIQ 160
+K F+ D N GFV + DLR + K G+ E + L D S++ ++
Sbjct: 370 VKRFKSLDYQNKGFVTVNDLRRYFK-------KMGEKVTEDQLHDILSE-VDLSRNAQVD 525
Query: 161 LKEWIDYYSAV 171
L E++ +A+
Sbjct: 526 LGEFLQLMNAL 558
>17977
Length = 445
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +3
Query: 100 VLKAFQKFDPHNTGFVEIRDLRGVYNCDNHPKIKTGQMTEEQVFVEFLQNFCDNSKDGKI 159
+++AF+ +D G ++I DLR C + EQVF ++CD ++DG+I
Sbjct: 225 LIRAFRFYDKDGKGKIDIDDLREA--CRKF-DVPIDVWLLEQVF-----DYCDENRDGQI 380
Query: 160 QLKEWIDY 167
E+ ++
Sbjct: 381 DYLEFANF 404
>03299
Length = 889
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 126 CDNHPKIKTGQMTEEQVFVEFLQNFCDNSKDGKIQLKEWIDYYSAVS 172
CD KIKT + F N DN + K+ L+ ++D S VS
Sbjct: 460 CDRAYKIKTNNFRQRHEPARFTHN*SDNVTN-KVILEPYVDLVSVVS 323
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00316280__3687.m00043Ras_family_protein
(211 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08428 137 4e-33
33374 105 3e-31
34468 127 4e-30
33794 112 1e-25
26083 102 8e-23
01398 101 3e-22
07465 100 3e-22
17511 100 8e-22
32723 98 2e-21
14456 98 2e-21
33380 92 7e-20
30760 91 4e-19
05468 90 8e-19
13901 89 2e-18
13750 84 5e-17
07580 82 2e-16
01972 72 8e-16
11257 79 1e-15
26536 78 3e-15
00858 75 2e-14
12339 74 5e-14
19006 73 7e-14
27191 73 9e-14
01095 72 1e-13
13745 72 1e-13
11728 72 2e-13
34597 67 4e-12
35581 67 4e-12
34359 66 9e-12
09204 61 3e-10
19656 60 6e-10
29380 55 3e-08
14775 53 8e-08
08153 52 2e-07
09827 51 4e-07
33605 50 5e-07
31291 50 9e-07
18509 47 6e-06
00552 44 3e-05
10862 44 6e-05
25618 41 3e-04
14119 41 4e-04
25796 37 0.005
12443 35 0.031
10708 33 0.092
06027 32 0.20
>08428
Length = 1109
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 96/162 (59%)
Frame = -3
Query: 12 KLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQER 71
K+ L+G+S VGKSS++LRF + TIG F ++ + G + QIWDTAGQE+
Sbjct: 1065 KVCLLGDSGVGKSSIVLRFVTGSYRPSQESTIGASFMSKSLVVDGAGYRFQIWDTAGQEK 886
Query: 72 FKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADLESKR 131
F+ + YY+GA ++VYD+T +TFK + +W+ E N++ + GNK DLE R
Sbjct: 885 FRALAPMYYRGAAAAVIVYDVTRPRTFKSVKSWIQELRSFGPPNIVLAIAGNKCDLEELR 706
Query: 132 QVTFEEGKELADSLGIKFIETSALNSNNVETAFITLATEIKS 173
+V ++ +E A S+ F ETSA+ + NVE F LA ++
Sbjct: 705 EVVEKDAQEYASSISAIFGETSAMTAVNVEEMFTELARQLPP 580
>33374
Length = 489
Score = 105 bits (263), Expect(2) = 3e-31, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 71/114 (62%)
Frame = +1
Query: 47 FKIRTFDIQGKAVKLQIWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLA 106
F +T + VK +IWDTAGQER+ ++ YY+GA I+VYDIT++ TF W+
Sbjct: 139 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQDTFGRAKTWVK 318
Query: 107 EADKNANENVIKLLVGNKADLESKRQVTFEEGKELADSLGIKFIETSALNSNNV 160
E + A+ N++ L GNKADL +KR V FEE + A+ + F+ETSA + NV
Sbjct: 319 ELQRQASPNIVIALAGNKADLANKRMVEFEEAQAYAEENSLLFMETSAKTAMNV 480
Score = 45.8 bits (107), Expect(2) = 3e-31, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +2
Query: 11 FKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTF 52
FKL+L+G SAVGKSSL+LRF F++ TIG F +R F
Sbjct: 32 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAF*LRQF 157
>34468
Length = 1502
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 106/168 (63%), Gaps = 5/168 (2%)
Frame = +1
Query: 10 LFKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQ 69
+FK+++IG+S VGK+ L RF F D TIGVDF+ ++ + + +KLQ+WDTAGQ
Sbjct: 493 IFKIIVIGDSNVGKTCLTYRFCLGKFPDKTEATIGVDFREKSIQVDSEHLKLQLWDTAGQ 672
Query: 70 ERF-KTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADK-NANENVIKLLVGNKADL 127
ERF K++ YY+ H ++ VYD+T +F+++ W+ E D+ N + + ++LVGNK D+
Sbjct: 673 ERFRKSMVQHYYRNVHAVVFVYDMTKMSSFENMPAWIEECDRHNLTKYIPRILVGNKCDV 852
Query: 128 ESKRQVTFEEGKELADSLGIKFIETSALN---SNNVETAFITLATEIK 172
+ V ++ AD+ + ETSA + +N+V+ F+T+A ++K
Sbjct: 853 VERIAVNTNLAQKFADAHNMPLFETSAKDDEKANHVDAIFMTVAHKLK 996
>33794
Length = 779
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Frame = -1
Query: 31 SDNIF---NDC---FLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQERFKTITSSYYKGAH 84
++N F NDC L T+ +K T ++GK VKLQIWDT+GQ RF TI SY +GA
Sbjct: 746 TENPFCSGNDCTSHILQTVA--YKTTTILLEGKRVKLQIWDTSGQGRFCTIIRSYSRGAQ 573
Query: 85 GIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADLESKRQVTFEEGKELADS 144
GIILVYDIT+K +F ID WL E +++A + K+LVGN+ L KRQV ++ + A
Sbjct: 572 GIILVYDITNKWSFDGIDRWLKEVEEHA-PGIPKVLVGNRLHLAYKRQVAAKQAETYASR 396
Query: 145 LGIKFIETSALNSNNVETAFITLA 168
+ E S L N+ +F LA
Sbjct: 395 NNMSCFEISPLCDFNIRESFCELA 324
>26083
Length = 432
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 75/114 (65%)
Frame = +1
Query: 11 FKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQE 70
FKL+ +G +VGK+SL+ RF + F++ + TIG+DF +T ++ + ++LQ+WDTAGQE
Sbjct: 79 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 258
Query: 71 RFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNK 124
RF+++ SY + + ++VYDIT+ +F W+ + +VI +LVGNK
Sbjct: 259 RFRSLIPSYIRDSSVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNK 420
>01398
Length = 1421
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Frame = -2
Query: 69 QERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANEN-VIKLLVGNKADL 127
QERF++IT SYY+ + G+I+VYDIT + TF+++ W EA + + I L++G+K+D
Sbjct: 1420 QERFRSITRSYYRNSVGVIIVYDITKRSTFENLKQWYEEARNHIEPHKAIFLVLGHKSDR 1241
Query: 128 ESKRQVTFEEGKELADSLGIKFIETSALNSNNVETAFITLATEIKSRVQKNTETAPRGAN 187
E RQVT EG+ A+ G+KF ETSA + +N+E F +A + +Q G +
Sbjct: 1240 EDARQVTAREGRRFAEMHGLKFFETSAKSGHNIEDVFAQIAKDTYQHLQDGHIRLEEGWD 1061
Query: 188 A-QTGKTKIKAGDDLSNKKKKDGCC 211
+ G + + L+ ++ GCC
Sbjct: 1060 GVKQGFARPRETVHLAEGEESGGCC 986
>07465
Length = 1103
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%)
Frame = +3
Query: 24 SSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQERFKTITSSYYKGA 83
SS++ R+ IF + TIGVDF R ++ G+ V+L +WDTAGQE F IT +YY+GA
Sbjct: 240 SSMIQRYCKGIFTKDYKKTIGVDFLERQIEVGGEDVRLMLWDTAGQEEFDAITKAYYRGA 419
Query: 84 HGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADLESKRQVTFEEGKELAD 143
+L + D+ +F+ ++ W + + E + ++V NK DL V EE + LA
Sbjct: 420 QACVLAFSTVDRDSFEALETWKRKVEDEVGE-IGMVIVQNKIDLIDDAVVRPEEAENLAK 596
Query: 144 SLGIKFIETSALNSNNVETAFITLA 168
L ++F TS + NV+ F LA
Sbjct: 597 KLRLRFYRTSVKENMNVDEVFRYLA 671
>17511
Length = 483
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Frame = -3
Query: 10 LFKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQ 69
L K++++G+S VGK+SL+ ++ + F++ + TIG DF + + + V +QIWDTAGQ
Sbjct: 367 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 188
Query: 70 ERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNW----LAEADKNANENVIKLLVGNKA 125
ERF+++ ++Y+GA +LV+D+T TF+ +D+W L +A EN +++GNK
Sbjct: 187 ERFQSLGVAFYRGADCCVLVFDVTMPNTFRSLDSWRDEFLIQASPRDPENFPFVVIGNKI 8
Query: 126 DL 127
DL
Sbjct: 7 DL 2
>32723
Length = 384
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 71/108 (65%)
Frame = +2
Query: 69 QERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADLE 128
QERF++IT SYY+ A+ +ILVYD+ +Q+++ + W+ E + A V+ LVGNK D
Sbjct: 2 QERFRSITQSYYRSANALILVYDVCSQQSYESLPQWIHEIELYAGTKVLAFLVGNKIDQT 181
Query: 129 SKRQVTFEEGKELADSLGIKFIETSALNSNNVETAFITLATEIKSRVQ 176
KR++ GKE A+ ++F+ETSA ++NVE F T+A ++ ++ Q
Sbjct: 182 DKREIPTHIGKEFAERYEMRFLETSAKEADNVEKLFSTIAYQLTAQAQ 325
>14456
Length = 1867
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Frame = -1
Query: 21 VGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQERFKTITSSYY 80
VGKSSL+ RF N F+ TIGV+F + + + +QIWDTAGQERFK++ + +Y
Sbjct: 1108 VGKSSLMNRFVSNKFDAQSFHTIGVEFLNKDVVVDDETYTMQIWDTAGQERFKSLRTPFY 929
Query: 81 KGAHGIILVYDITDKQTFKDIDNWLAE----ADKNANENVIKLLVGNKADLESKRQVTFE 136
+GA +L + + Q+F+++ W E AD +++GNK D+E RQVT E
Sbjct: 928 RGADCCLLTFSVDSMQSFRNLSMWRKEFLYYADIQDGVTFPFVVLGNKIDVEG-RQVTNE 752
Query: 137 EGKELADS-LGIKFIETSALNSNNVETAFITLATEIK 172
E + + + ETSA ++ NVE AF+ ++
Sbjct: 751 EARSWCTANSNAPYFETSAKDATNVEKAFLAAVQRLR 641
>33380
Length = 282
Score = 92.0 bits (227), Expect(2) = 7e-20, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%)
Frame = +3
Query: 55 QGKAVKLQIWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANE 114
Q K VKLQIWDTAGQER++TIT++YY+GA G IL+YD+T++++F + +W + + +
Sbjct: 48 QDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFNAVQDWCTQIKTYSWD 227
Query: 115 NVIKLLVGNKADLESKR 131
N +LVGNK DLE +R
Sbjct: 228 NAQVVLVGNKCDLEDER 278
Score = 21.9 bits (45), Expect(2) = 7e-20, Method: Compositional matrix adjust.
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +2
Query: 39 FLPTIGVDFKIRTF 52
F+ T+G+DFK+ +
Sbjct: 2 FVSTVGIDFKVNSL 43
>30760
Length = 596
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
Frame = -1
Query: 12 KLLLIGNSAVGKSSLLLRF-SDNI-FNDCFLPTIGVDFKIRTFDIQGK--AVKLQIWDTA 67
K ++ G+S VGKSS+ F SD+ F + T GV+ ++ +I V+L ++D+A
Sbjct: 524 KCIVTGDSGVGKSSICQVFHSDSAHFPKNYSMTTGVEVLVKLVNIPDSRDQVELYLFDSA 345
Query: 68 GQERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANENVIK-LLVGNKAD 126
G+E F + ++ +++VYD+TD+ +F WL VI +LV NK D
Sbjct: 344 GKEIFSENVTKFWDQPSVVMVVYDVTDETSFSGCVRWLERVRAAKPNTVIPGVLVANKTD 165
Query: 127 LESKRQVTFEEGKELADSLGIKFIETSALNSNNVETAFITLA 168
L+ +R+V+ +EGK+LA S G+++ E SA N +T F LA
Sbjct: 164 LDERRRVSRKEGKDLAQSHGLEYFECSAKEMQNTDTPFFCLA 39
>05468
Length = 1558
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 7/171 (4%)
Frame = -3
Query: 8 DYLFKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKA-VKLQIWDT 66
++L+K+L+IG GK+S++ R+ F+ + TIGVDF ++ + ++LQ+WD
Sbjct: 1547 EHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDADTLIRLQLWDI 1368
Query: 67 AGQERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNAN----ENVIKLLVG 122
AGQERF +T YYK A G +V+D+T TF + W + D V +L+
Sbjct: 1367 AGQERFGNMTRVYYKEAVGAFVVFDVTRASTFDAVTKWKNDLDSKVQLADGSPVPCVLLA 1188
Query: 123 NKADLESKRQV-TFEEGKELADSLG-IKFIETSALNSNNVETAFITLATEI 171
NK D + V + E G I + ETSA + N++ A L T I
Sbjct: 1187 NKCDQAKEGLVNNTSQMDEFCSEKGFIGWYETSAKENINIDEAARFLVTRI 1035
>13901
Length = 962
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Frame = -3
Query: 10 LFKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKA-VKLQIWDTAG 68
LFK+++IG+ VGK+S + R+ ++ F + TIGVDF ++ K +KLQ+WD AG
Sbjct: 288 LFKVIIIGDPTVGKTSFVQRYVNDSFRRDYKMTIGVDFALKVIRWSDKCNIKLQLWDIAG 109
Query: 69 QERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNW 104
QERF ++T YYK AH I+++D+T K T+++ W
Sbjct: 108 QERFTSMTRVYYKDAHACIVMFDLTQKNTYQNAIRW 1
>13750
Length = 503
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Frame = -2
Query: 23 KSSLLLRFSDNIFNDCFLPTIGV---DF-KIRTFDIQGKAVKLQIWDTAGQERFKTITSS 78
K+ LL R+ F D +PTI V +F + RT + V+ +WDT G E ++++ S
Sbjct: 502 KTCLLRRYQKGFFMDRTMPTIAVLCSEFNESRTDPLN---VRYTLWDTGGAETYRSLWVS 332
Query: 79 YYKGAHGIILVYDITDKQTFKDIDN-WLAEADKNANENVIKLLVGNKADLESKRQVTFEE 137
+++GA +LVYD+T + +F W KN E + + VG+K DLE R ++ E
Sbjct: 331 HFRGAQVALLVYDVTCEWSFLTATTVWRKALMKNIPEAQV-IFVGSKTDLEENRVISTER 155
Query: 138 GKELADSLGIKFIETSALNSNNVETAFITLATEIKSRVQKN 178
G+ A G F ETS++ NV+ F +A I +R+Q++
Sbjct: 154 GQAFATQCGYTFFETSSVTGKNVDAVFWEIAF-ILARLQRS 35
>07580
Length = 921
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 1/149 (0%)
Frame = +3
Query: 27 LLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQERFKTITSSYYKGAHGI 86
L IF + + PTI ++ + ++ G+ L+I DTAG E+F + Y K G
Sbjct: 111 LYSLCKGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGF 287
Query: 87 ILVYDITDKQTFKDIDNWLAEADKNAN-ENVIKLLVGNKADLESKRQVTFEEGKELADSL 145
+L Y IT + TF D+ + + + ++V LLVGNK DLE +R V ++G+ LA S
Sbjct: 288 LLAYSITAQSTFNDLQELREQILRVKDTDDVPMLLVGNKCDLEDERVVGKDQGQGLARSF 467
Query: 146 GIKFIETSALNSNNVETAFITLATEIKSR 174
F+ETSA NV F+ L +I +
Sbjct: 468 SCAFLETSAKARINVNEIFMDLVRQINKK 554
>01972
Length = 2359
Score = 71.6 bits (174), Expect(2) = 8e-16, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Frame = +3
Query: 39 FLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTF 98
++ T+GV+ F +K +WDTAGQE+F + YY ++++D+T + T+
Sbjct: 387 YVATLGVEVHPLLFHTSRGKLKFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTY 566
Query: 99 KDIDNWLAEADKNANENVIKLLVGNKADLESK----RQVTFEEGKELADSLGIKFIETSA 154
K++ NW + + EN+ +L GNK D++ + + + F K L ++ + SA
Sbjct: 567 KNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVKAKAIVFHRKKNL------QYYDISA 725
Query: 155 LNSNNVETAFITLATEI 171
++ N E F+ LA ++
Sbjct: 726 KSNYNFEKPFLWLARKL 776
Score = 28.5 bits (62), Expect(2) = 8e-16, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 4 QQDYDYLFKLLLIGNSAVGKSSLLLRFSDNIFNDCFLP 41
+ + + FKL+L+G+ VGK++ + R F LP
Sbjct: 283 RMEQEPTFKLVLVGDGGVGKTTFVKRHVTGEFEKNMLP 396
>11257
Length = 1102
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Frame = -2
Query: 54 IQGKAVKLQIWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAE----AD 109
+ G+ +QIWDTAGQER+K++ + +Y+G +L + + + ++ + + +W E AD
Sbjct: 1041 VDGETFTMQIWDTAGQERYKSLRTPFYRGTDCCLLTFSVDNLKSLQSLSDWYDEFVNYAD 862
Query: 110 KNANENVIKLLVGNKADLESKRQVTFEEGKELADSLG-IKFIETSALNSNNVETAFITLA 168
+ + +++GNKAD+E +R+V+ E+ + G + + ETSA +S NV+ AF+ +
Sbjct: 861 IQDSASFPFVIIGNKADIE-EREVSSEDAYNWCRTHGNLPYFETSAKDSLNVQQAFLAVV 685
Query: 169 TEIKSRVQKNTETAPR 184
++ ++ E R
Sbjct: 684 RRLREMDEQMDERPTR 637
>26536
Length = 829
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Frame = +2
Query: 57 KAVKLQIWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTFKDID---NWLAEADKNAN 113
+ V DTAGQE + ++ Y + G I+VY +TD +F++ + WL +
Sbjct: 122 RRVSWTFLDTAGQEEYSSMREHYTRSGDGFIVVYSVTDVTSFQEAEAVFRWLTRFQDETS 301
Query: 114 ENVIKLLVGNKADLESKRQVTFEEGKELADSLGIKFIETSALNSNNVETAFITLATEIK 172
+ + L GNK DL S R+VT EEG+++AD LG+ + ETSA +NV + L I
Sbjct: 302 IHAV--LCGNKTDLTSDRKVTPEEGRKMADRLGMLYFETSAKTGDNVSQVYHGLLRSIP 472
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +2
Query: 11 FKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTI 43
+K++++G+ VGKSSL +RF+ + F D + PTI
Sbjct: 488 YKIVMLGSGGVGKSSLTIRFTQDTFLDVYDPTI 586
>00858
Length = 1658
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 2/163 (1%)
Frame = -2
Query: 11 FKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQE 70
+KL+++G VGKS+L ++ N F + + PT D + I G+ L I DTAGQE
Sbjct: 1588 YKLVVVGAGGVGKSALTIQLXQNHFVEEYDPTXE-DSXRKQVVIDGETCLLDILDTAGQE 1412
Query: 71 RFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEAD--KNANENVIKLLVGNKADLE 128
+ + G + V+ + + ++F+DI+ + + K+A+E V +LVGNK DL
Sbjct: 1411 EXSAMRDQCMRTGEGFLCVFAVXNLKSFEDINQYREQIKRVKDADE-VPMVLVGNKVDL- 1238
Query: 129 SKRQVTFEEGKELADSLGIKFIETSALNSNNVETAFITLATEI 171
R V +GK +A+ I ++ETSA V+ AF TL EI
Sbjct: 1237 PIRNVEQRQGKHMAELYHIPYVETSAKTRQGVDDAFYTLVREI 1109
>12339
Length = 578
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Frame = -2
Query: 69 QERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNW----LAEADKNANENVIKLLVGNK 124
QERF+++ ++Y+GA ILVYD+T+ +TF +D+W L +A E+ +++GNK
Sbjct: 577 QERFQSLGVAFYRGADCCILVYDVTEXKTFDSLDSWQREFLNQASPRDPEHFPFVVIGNK 398
Query: 125 ADLESKRQVTFEEGKELADSL-GIKFIETSALNSNNVETAFITLA 168
DL++ R VT + G+ + GI + ETSA + NVE AF T+A
Sbjct: 397 IDLDN-RVVTAKRGQGWCSTKGGIPYFETSAKEAINVEQAFQTVA 266
>19006
Length = 568
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Frame = -2
Query: 12 KLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQER 71
KL+++G+ A GK+ LL+ FS + F + ++PT+ ++ + ++ K V+L +WDTAGQE
Sbjct: 432 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 256
Query: 72 FKTITSSYYKGAHGIILVYDITDKQTFKDI-DNWLAEADKNANENVIKLLVGNKADL 127
+ + Y I++ + I + ++I + W E ++ NV +LVGNK DL
Sbjct: 255 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-RHFCPNVPIILVGNKKDL 88
>27191
Length = 443
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 62/103 (60%)
Frame = +1
Query: 23 KSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQERFKTITSSYYKG 82
K+ L+ F ++ FN + PT+GVD+ + + G +++ +WD +G + + + Y G
Sbjct: 1 KTCLIKHFCESKFNQGYQPTVGVDYGFKIQTVNGVDMRVHMWDLSGSNEYLDVRNELYTG 180
Query: 83 AHGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKA 125
+ I +V+D+++ +F+ +D+WL E ++ A + + ++VGN+
Sbjct: 181 SDAIFIVFDVSNTPSFEALDSWLREINRFATGSPLNVIVGNRV 309
>01095
Length = 1745
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%)
Frame = -1
Query: 88 LVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADLESKRQVTFEEGKELADSLGI 147
+VYDIT++ TF W+ E + A+ N++ L GNKADL +KR V FEE + A+ +
Sbjct: 1745 VVYDITNQDTFGRAKTWVKELQRQASPNIVIALAGNKADLANKRMVEFEEAQAYAEENSL 1566
Query: 148 KFIETSALNSNNVETAFITLATEIKSRVQKNTETAPRGANAQTGKTKIKAGDDLSNKKKK 207
F+ETSA + NV F+ +A ++ KN G +Q + ++ ++ S ++ +
Sbjct: 1565 LFMETSAKTAMNVNDIFLAIA----KKLPKNE----GGGGSQPRQQGVRLNNEQS-QQSE 1413
Query: 208 DGCC 211
GCC
Sbjct: 1412 GGCC 1401
>13745
Length = 1045
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Frame = +2
Query: 69 QERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNW----LAEADKNANENVIKLLVGNK 124
QERF+++ ++Y+GA +LVYD+T +FK++D+W L +A E+ +++GNK
Sbjct: 2 QERFQSLGVAFYRGADCCVLVYDVTAPNSFKNLDSWRDEFLIQASPRDPEHFPFVVLGNK 181
Query: 125 ADLESKRQVTFEEGKELADSLG-IKFIETSALNSNNVETAFITLATEIKSRVQKNTET 181
DL++ RQV+ ++ S I + ETSA NVE AF T+A K+ +++ TE
Sbjct: 182 VDLDN-RQVSTRRAQQWCQSKNDIPYYETSAKEGINVEMAFQTIA---KNALEQETEA 343
>11728
Length = 635
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Frame = -1
Query: 11 FKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQE 70
K +++G+ AVGK+ LL+ ++ N F ++PT+ ++ + K + L +WDTAGQE
Sbjct: 488 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPINLGLWDTAGQE 312
Query: 71 RFKTITSSYYKGAHGIILVYDITDKQTFKDID-NWLAEADKNANENVIKLLVGNKADLES 129
+ + Y ++ + + +F+++ W E + I +LVG K DL
Sbjct: 311 DYDRLRPLSYPQTDVFLICFSLISPASFENVKAKWYPEVSHHCPNTPI-ILVGTKLDLRE 135
Query: 130 KRQ------------VTFEEGKELADSLGI-KFIETSAL 155
++ +T+ +G +A +G K++E SAL
Sbjct: 134 DKETIEKLKEKKLAPITYPQGLAMAKDIGAGKYLECSAL 18
>34597
Length = 773
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%)
Frame = -2
Query: 95 KQTFKDIDNWLAEADKNANENVIKLLVGNKADLESKRQVTFEEGKELADSLGIKFIETSA 154
K++F++I WL D++ANE+V K+++GNK D+ KR V+ E G+ +A I+F+ETSA
Sbjct: 715 KKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTDKRVVSKERGEAIAREHSIRFMETSA 536
Query: 155 LNSNNVETAFITLATEI 171
++ N+E AF LA I
Sbjct: 535 KSNINIERAFCELAEAI 485
>35581
Length = 364
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +2
Query: 11 FKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDI-QGKAVKLQIWDTAGQ 69
FK +L+G++ VGK+ LL R + + F D L ++ + T + G + +WDTAGQ
Sbjct: 47 FKCVLLGDAGVGKTCLLNRLATDKFLDSPLTSLTTASLLTTVTLTSGVMASVDLWDTAGQ 226
Query: 70 ERFKTITSSYYKGAHGIILVYDITDKQTFKD 100
ER++++TSSYY+ +++VYD K D
Sbjct: 227 ERYRSLTSSYYRDTKAVLIVYDAEHKLKLTD 319
>34359
Length = 1042
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 66/121 (54%)
Frame = +3
Query: 11 FKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQE 70
FKL+L+G ++++ R ++ T+GV+ F+ ++ +WDTAGQE
Sbjct: 54 FKLVLVGGRWEWANNIVKRHVTGS*KK-YVATLGVEVHPLQFNTSRGLLRFNVWDTAGQE 230
Query: 71 RFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADLESK 130
+F + YY I+++D+T + T+K++ NW + + EN+ +L GNK D++ +
Sbjct: 231 KFGGLRDGYYIQGTCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 407
Query: 131 R 131
+
Sbjct: 408 K 410
>09204
Length = 1051
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Frame = -3
Query: 71 RFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADL--- 127
R++ ++ YY+GA IL +D+TDK +F I W+ E ++ E + + G K DL
Sbjct: 1049 RYEAMSRIYYRGAKAAILCFDLTDKSSFDRIRFWIGELRQHEEECKL-YICGTKFDLVHD 873
Query: 128 -ESKRQVTFEEGKELADSLGIKFIETSALNSNNVETAFITLATE-IKSRVQKNTETAPRG 185
+R V K LAD + ETS++ +N+E F +A + +K R+ A
Sbjct: 872 DPERRAVPRSVAKALADDCMAEIYETSSMTGDNIEKLFTKIAEDYMKERIAAEELEAEAL 693
Query: 186 ANAQTGK 192
A+ G+
Sbjct: 692 KIAEIGR 672
>19656
Length = 428
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = +3
Query: 12 KLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQER 71
K +++G+ AVGK+ LL+ ++ N F ++PT+ ++ + G+ V L +WDTAGQE
Sbjct: 117 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGRPVNLGLWDTAGQED 293
Query: 72 FKTITSSYYKGAHGIILVYDITDKQTFKDID-NWLAEADKNA 112
+ + Y +L + + +F++I W E + +
Sbjct: 294 YDRLRPLSYPQTDVFLLCFSVASPASFENIRAKWYPEVNHHC 419
>29380
Length = 853
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = -2
Query: 83 AHGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADLESK-RQVTFEEGKEL 141
A I+VYD+ TF W+ E + E+V+ +L GNK DL ++ R V+FE+ +
Sbjct: 852 ASAAIIVYDVNIADTFSRALAWVKELRQQNTESVLIILAGNKVDLATQHRAVSFEDAQSF 673
Query: 142 ADSLGIKFIETSALNSNNVETAFITLATEI 171
A G+ F E SA V F+TLA ++
Sbjct: 672 ARENGLLFAEVSAKTGMAVNEIFMTLANQL 583
>14775
Length = 380
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 4/162 (2%)
Frame = -2
Query: 23 KSSLLLRFSDNIFNDCFLPTIGV---DF-KIRTFDIQGKAVKLQIWDTAGQERFKTITSS 78
K+ LL R+ F D +PTI V +F + RT + V+ +WDT G E ++++ S
Sbjct: 379 KTCLLRRYQKGFFMDRTMPTIAVLCSEFNESRTDPLN---VRYTLWDTGGAETYRSLWVS 209
Query: 79 YYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANENVIKLLVGNKADLESKRQVTFEEG 138
+++GA +LVYD VT E G
Sbjct: 208 HFRGAQVALLVYD-----------------------------------------VTCERG 152
Query: 139 KELADSLGIKFIETSALNSNNVETAFITLATEIKSRVQKNTE 180
+ A G F ETS++ NV+ F +A I +R+Q++
Sbjct: 151 QAFATQCGYTFFETSSVTGKNVDAVFWEIAF-ILARLQRSAH 29
>08153
Length = 1703
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Frame = +1
Query: 12 KLLLIGNSAVGKSSLL--LRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQ 69
++L++G A GK+++L L+ + + +PTIG F + T ++ K + +WD GQ
Sbjct: 88 RILMVGLDAAGKTTILYKLKLGEIV---TTIPTIG--FNVET--VEYKNISFTVWDVGGQ 246
Query: 70 ERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEA-DKNANENVIKLLVGNKADLE 128
++ + + Y++ G+I V D D++ + LA +++ + I L+ NK DL
Sbjct: 247 DKIRPLWRHYFQNTQGLIFVVDSNDRERINEAKEELARMLNEDDLRDAIILVFANKQDLP 426
Query: 129 ---SKRQVTFEEGKELADSLGIKFI--ETSALNSNNVETAFITLATEIKSR 174
S +VT G LA+ G K+ T A + + + L+T +K +
Sbjct: 427 NAYSASEVTAHLG--LANLKGRKWYMQATCATSGDGMYEGLEWLSTTLKHK 573
>09827
Length = 1201
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Frame = -3
Query: 11 FKLLLIGNSAVGKSSLL--LRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAG 68
++L++G A GK+++L L+ + + +PTIG F + T ++ K + +WD G
Sbjct: 1112 MRILMVGLDAAGKTTILYKLKLGEIV---TTIPTIG--FNVET--VEYKNISFTVWDVGG 954
Query: 69 QERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEA-DKNANENVIKLLVGNKADL 127
Q++ + + Y++ G+I V D DK+ ++ L +++ + + L+ NK DL
Sbjct: 953 QDKIRPLWRHYFQNTQGLIFVVDSNDKERVQEAREELTRMLNEDELRDAVLLVFANKQDL 774
>33605
Length = 888
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%)
Frame = +1
Query: 12 KLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQIWDTAGQER 71
+LL++G GK+++L +F+ D PT+G F I+T + +G KL +WD GQ+
Sbjct: 502 RLLMLGLDNAGKTTILKKFNGEDI-DTISPTLG--FNIKTLEHRG--FKLNVWDVGGQQS 666
Query: 72 FKTITSSYYKGAHGIILVYDITDKQTFKD 100
++ +Y++ G++ V D D+ D
Sbjct: 667 LRSYWRNYFESTDGLVWVVDSADRMRIAD 753
>31291
Length = 446
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Frame = -1
Query: 61 LQIWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTFKDID-NWLAEADKNANENVIKL 119
LQ+WDTAGQE + + Y +L + + + + K++ W E ++ + +V +
Sbjct: 446 LQLWDTAGQEDYDRLRPLAYPNTDVFMLXFSLMSEASMKNVKVKWYPEI-RHHDPHVPIV 270
Query: 120 LVGNKAD----------LESKRQ--VTFEEGKELADSLGIK-FIETSALNSNNVETAF 164
LVG K D L S RQ V+ +G +LA ++ K + E S+ N++TAF
Sbjct: 269 LVGTKLDLRQDKEAVRKLRSSRQDPVSSNQGNDLAKAIKAKRYFECSSKTQENLKTAF 96
>18509
Length = 625
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Frame = -3
Query: 110 KNANENVIKLLVGNKADLESKRQVTFEEGKELADSLGIKFIETSALNSNNVETAFITLAT 169
K+A+E V +LVGNK DL R V +GK +A+ I ++ETSA V+ AF TL
Sbjct: 542 KDADE-VPMVLVGNKVDL-PIRNVEQRQGKHMAELYHIPYVETSAKTRQGVDDAFYTLVR 369
Query: 170 EIK 172
EI+
Sbjct: 368 EIR 360
>00552
Length = 455
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Frame = -3
Query: 63 IWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAE 107
IWDTAGQER+K++ + +Y+G +L + + + ++ + + +W E
Sbjct: 147 IWDTAGQERYKSLRTPFYRGTDCCLLTFSVDNLKSLQSLSDWYDE 13
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = -1
Query: 10 LFKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDFKIRTFDIQGKAVKLQ 62
L K++L+G+ VGKSSL+ RF N F+ TIGV+F + + G+ +Q
Sbjct: 446 LLKVVLLGDGGVGKSSLMNRFVSNKFDAQSFHTIGVEFLTKDVVVDGETFTMQ 288
>10862
Length = 2896
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = -3
Query: 48 KIRTFDIQGKAVKLQIWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAE 107
+I+ + Q + + +WD GQ++ + + YY G G+I V D D+ ID E
Sbjct: 2519 RIQCRNCQLQECQFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---IDEARQE 2349
Query: 108 ADKNANE----NVIKLLVGNKADL 127
+ N+ + I L+ NK DL
Sbjct: 2348 LHRIINDREMRDAIILIFANKQDL 2277
>25618
Length = 475
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +3
Query: 115 NVIKLLVGNKADLESK-RQVTFEEGKELADSLGIKFIETSALNSNNVETAFITLATEIKS 173
+V+ +L GNKADL S+ R V+ ++ + A+ G+ F E SA V F+T+A ++
Sbjct: 75 SVLIVLAGNKADLASEHRAVSADDARTFAEDNGLIFAEVSAKTGMAVSEVFMTIAHKLVR 254
Query: 174 RVQKNTETAPRGANAQTGKTKIKAGDDLSNKKKKDGCC 211
R A G + G+ +++ LS ++ G C
Sbjct: 255 R-------AEEGQGSXQGRERVR----LSEAEEASGGC 335
>14119
Length = 602
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 97 TFKDIDNWLAEADKNANENVIKLLVGNKADLESK-RQVTFEEGKELADSLGIKFIETSAL 155
TF W+ E + +V+ +L GNKADL S+ R V+ ++ + A+ G+ F E SA
Sbjct: 1 TFNRALAWVKELRQQNAGSVLIVLAGNKADLASEHRAVSADDARTFAEDNGLIFAEVSAK 180
Query: 156 NSNNVETAFITLATEIKSRVQK 177
V F+T+A ++ R ++
Sbjct: 181 TGMAVSEVFMTIAHKLVRRAEE 246
>25796
Length = 422
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1
Query: 3 LQQDYDYLFKLLLIGNSAVGKSSLLLRF 30
+ + YDYLFK L+IG++ GKS LL F
Sbjct: 89 MSETYDYLFKFLIIGSAGSGKSCLLHHF 6
>12443
Length = 837
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Frame = -3
Query: 11 FKLLLIGNSAVGKSSLLLRFSDNIFNDCFLPTIGVDF-------KIRTFDIQGKAV--KL 61
+K++L+G + VGK+S + + + N T G+ KI+ GK V ++
Sbjct: 580 YKVMLVGKTGVGKTSTVAKLTGNDIPLTHNETPGLQTSHLYWPGKIKHL---GKTVLFQI 410
Query: 62 QIWDTAGQ---ERFKTITSSYYKGAHGIILVYDITDKQTFKDIDNWLAEADKNANENVIK 118
Q++D AG+ +R+ I + G GI+ ++ DK +F +I L + + K
Sbjct: 409 QLFD-AGETALKRYDHILPACQDGVDGIMFLFSFVDKGSFDEIPQLLTRF-TTLEDGICK 236
Query: 119 LLVGNKADLESK 130
+ +G K K
Sbjct: 235 IALGTKYPFPHK 200
>10708
Length = 2775
Score = 33.1 bits (74), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 57 KAVKLQIWDTAGQERFKTITSSYYKGAHGIILVYDITDKQTFKDI 101
+ V+L +WDTAGQE + + Y I++ + I + ++I
Sbjct: 2729 QQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI 2595
>06027
Length = 2155
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -2
Query: 17 GNSAVGKSSLLLRFSDNIFNDCF----LPTIGVDFKIRTFDIQGKAVKLQIWDTAGQERF 72
G+S + SSL + D++F CF P F + F + + L++W ERF
Sbjct: 1794 GHSVLVMSSLTITLFDSVFLFCFSVICYPLFSPSFPLXLFHDKVSXLFLKVWKGFTMERF 1615
Query: 73 KTI 75
+
Sbjct: 1614 SAV 1606
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00187270__14.m00511AMP-binding_enzyme_family_protein
(662 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02291 139 5e-33
03756 95 8e-20
34113 88 1e-17
14024 85 1e-16
20450 75 6e-14
21564 63 4e-10
26510 59 9e-09
37217 49 6e-06
13327 43 3e-04
00262 39 0.006
14264 36 0.047
19187 33 0.26
22123 28 0.54
>02291
Length = 3161
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 114/410 (27%), Positives = 196/410 (47%), Gaps = 30/410 (7%)
Frame = -1
Query: 161 FCSAASVKTILSTQNLQKLVNIIS-------FDPLDEETKQQIQQRGLNLMYFSDLVLQG 213
F +A+S ++ +N Q+L I+ + + T Q + +++ + + G
Sbjct: 3095 FVAASSQANVIVAENSQQLKKILQVRHNLPHLKAIVQYTGQVDEAHAKDVLSWEQFMKAG 2916
Query: 214 TAHLLDLPNDV--------SPNTIFTFSYTSGTTGLPKGAMLSHKNF-----ISIIPSLG 260
D+P+ V SPN YTSGTTG PKG MLSH N +++ ++
Sbjct: 2915 D----DVPDSVLDERIKALSPNKCCVLIYTSGTTGTPKGVMLSHDNITYTVAVNMSSTMQ 2748
Query: 261 EIDIN-ENDSQLCYLPLPHVLQRIFNV-VCWYTGTKIAFFGGDILK--LKDDIQDSKPTL 316
+++ S + YLPL H+ ++ ++ V G F D LK L +++ +P +
Sbjct: 2747 QLNTKFGQQSGISYLPLSHIAAQMMDIYVXIGFGGTTYFAQPDALKGSLGATLREVRPHI 2568
Query: 317 FVSVPRLFNKFYDVIQDNLKKVQGCKQSLIQSA----IKTKLENLKTKNQLTHF-FYDKL 371
F+ VPR++ K + +Q + V G K+ + A +K ++ ++ + L
Sbjct: 2567 FLGVPRVWEKMQETMQTAARSVTGMKKKIGAWAKGVGLKANYAIMEGRSPPAXXPLANAL 2388
Query: 372 IFNKLKDVFG-GKIRIVASGSAPISQEVLDFFKIVLQCPVYEGYGQTEGTGFQFCTSKYD 430
+F K++ + G + + SG+API++E L++F + L P+ E YG +E +G
Sbjct: 2387 VFKKVRGLLGLDRCLMQLSGAAPIAKETLEYF-MSLNVPICEVYGMSECSG-PHTVGFPK 2214
Query: 431 MNSSGYVGGVCPQLEMKLIDVPEMNYFSTDKNEKGENIPRGEICVRGNSLFPGYYKDEEK 490
+N VG E+N +T+ + E+ GE+ + G +F GY DEEK
Sbjct: 2213 VNRVNSVG-------------RELNGCTTELANQDED-GNGEVVMHGRHVFMGYLNDEEK 2076
Query: 491 TKEAIDDQGWLHSGDIGLLLPNGSLKIIDRRKNIFKLSQGEYVAPEKVEN 540
TKEA+DD G LHSGD+G +G L I R K + + GE + P +E+
Sbjct: 2075 TKEALDDAGGLHSGDVGKKDKDGFLFITGRIKELIITAGGENIPPVAIED 1926
>03756
Length = 992
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 6/257 (2%)
Frame = +2
Query: 9 HIYAVPVSQKQQGETQIYRNIRGQKELLDFPSKEIQTIQAVIEHAHSKFKDRPFVGKRDP 68
H +V V +K++ + KEL+ + + +T + +G R
Sbjct: 89 HNQSVMVDEKERSRASCL--LANPKELMTYLYDDAKTTYEAFLRGLRVSNNGSCLGWRSG 262
Query: 69 KTNQFTYKTYSEEYRDARGVGSS-IQKLYLTHNTSEYKNIGVKLIGIYAKNRVEWNTVDM 127
F++ +Y + A GS I K N+S +GIY+ N VEW+ D+
Sbjct: 263 PGQPFSWMSYRQVLDRAHCFGSGLISKGVQPSNSS--------FVGIYSGNCVEWSLADL 418
Query: 128 ACALYGFTLIPLYDTLGSDTISYIFGQTQLTSCFCSAAS-VKTILSTQN----LQKLVNI 182
C +Y +PLYDTLG YI QT+L + C + K +L + L++ I
Sbjct: 419 GCHMYSMVPVPLYDTLGPQACVYIINQTKLCTVVCDDVNKAKRLLEIADQVPSLKRF--I 592
Query: 183 ISFDPLDEETKQQIQQRGLNLMYFSDLVLQGTAHLLDLPNDVSPNTIFTFSYTSGTTGLP 242
+ ++ + +R + L+ F ++ GT D P P+ + T YTSGTTG P
Sbjct: 593 FTGKTWPQDIRDLANERKVELLTFKEIESIGTKDTRD-PIPPKPDDLATLCYTSGTTGDP 769
Query: 243 KGAMLSHKNFISIIPSL 259
KG ML+H NF+ ++ S+
Sbjct: 770 KGVMLTHANFLIMLSSV 820
>34113
Length = 694
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 2/166 (1%)
Frame = -3
Query: 113 GIYAKNRVEWNTVDMACALYGFTLIPLYDTLGSDTISYIFGQTQLTSCFCSAASVKTIL- 171
GI+ +N EW D AC +Y + LYDTLG + + Y+ ++ + C IL
Sbjct: 506 GIFTQNSSEWVIADQACQMYSMVTVALYDTLGVEAVKYVVNLAEIGTVVCDKEVRAKILL 327
Query: 172 -STQNLQKLVNIISFDPLDEETKQQIQQRGLNLMYFSDLVLQGTAHLLDLPNDVSPNTIF 230
L L I+ + + EE +Q+ Q+ G+ ++ FS++ G ++ + P P+ +
Sbjct: 326 EGKSELPCLKLIVMXEEITEELQQKAQRAGVKIIRFSEVEDLGKKNIRE-PLLPKPSDVC 150
Query: 231 TFSYTSGTTGLPKGAMLSHKNFISIIPSLGEIDINENDSQLCYLPL 276
T +TSGTTG PKG +L+H N ++ + S + ++ D+ + PL
Sbjct: 149 TICFTSGTTGNPKGVVLTHANLVANVSS---VKVSLKDTMVWIQPL 21
>14024
Length = 655
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 2/191 (1%)
Frame = +3
Query: 387 VASGSAPISQEVLDFFKIVLQCPVYEGYGQTEGTGFQ-FCTSKYDMNSSGYVGGVCPQLE 445
+ S +AP+S E +F + L + + +G +E +G C + +S +G P E
Sbjct: 45 LVSAAAPMSPETKKYF-LSLDMKILDAFGMSETSGCHTLCQPDSTLLNS--IGKSLPGCE 215
Query: 446 MKLIDVPEMNYFSTDKNEKGENIPRGEICVRGNSLFPGYYKDEEKTKEAIDDQGWLHSGD 505
K+I+ D N GE+C+RG +F GY ++EKT+E++DD WLHSGD
Sbjct: 216 SKIIN--------QDANG------HGELCIRGRHVFMGYISNKEKTEESLDDDCWLHSGD 353
Query: 506 IGLLLPNGSLKIIDRRKNIFKLSQGEYVAPEKVENIYIRA-RGVQEAFLFGDSLQNYCVA 564
+ + G + + R K + + GE + P +ENI + G+ AFL G+ Q +
Sbjct: 354 LAYIDDKGYVCLTGRLKELIITAGGENIPPVHIENIIKKELDGISNAFLVGE--QRKYLT 527
Query: 565 ILVPNPDEIKK 575
+LV E+ +
Sbjct: 528 VLVSIKTEVDR 560
>20450
Length = 775
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 3/220 (1%)
Frame = -3
Query: 427 SKYDMNSSGYVGGVCPQLEMKLIDVPEMNYFSTDKNEKGENIPRGEICVRGNSLFPGYYK 486
+KY++ S G+ P E K+ID N+ G+ RG + +RG Y+K
Sbjct: 650 AKYELGSCGFP---TPNAEFKVIDSETGKCLGV--NQAGDLYKRGPLIMRG------YHK 504
Query: 487 DEEKTKEAIDDQGWLHSGDIGLLLPNGSLKIIDRRKNIFKLSQGEYVAPEKVENIYIRAR 546
+ + T + ID QGWL +GD+G NG L I+DR+K + K +GE VAP +E++ +
Sbjct: 503 NPQATADTIDAQGWLKTGDVGQFDSNGFLYIVDRKKELIKY-KGEQVAPAMLEDVLLSHP 327
Query: 547 GVQEAFLFGDSLQNYCVAILVPNPDEIK---KIAAELNVNADQDISVLCQNQQIINFYQK 603
G+ +A + G PD++ +A + D++ +++ +F K
Sbjct: 326 GISDAAVIG-------------RPDDMAGELPMAFVVKATGGNDLT----EKEVKDFVAK 198
Query: 604 NTFDHGKANKLFTFEQATKVHLEPKSFILLGLCTSTLKLQ 643
N + + F + ++ P IL L LKLQ
Sbjct: 197 NVASYMQLRGGVQFRK--EIPKSPSGKILRRLLRDELKLQ 84
>21564
Length = 509
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Frame = +1
Query: 63 VGKRDPKTNQFTYKTYSEEYRDARGVGSSIQKLYLT-HNTSEYKNIGVKLIGIYAKNRVE 121
+G + T + + TY+E + A +G+ + L L+ NT+ +G+Y++NR E
Sbjct: 49 LGYKPSPTEPYRWITYNELLQRAEYIGAGLIALGLSPQNTTR--------VGVYSQNRPE 204
Query: 122 WNTVDMACALYGFTLI--PLYDTLGSDTISYIFGQTQLTSCFC-SAASVKTILS----TQ 174
+ D C L+ ++++ PLYDTLG++ ++I Q ++ C + VK +L T
Sbjct: 205 YVITD--CGLWAYSMVGVPLYDTLGAEACNHILNQAEIKVVVCDTNVKVKNMLQRLSETP 378
Query: 175 NLQKLVNIISFDPLDEETKQQIQQRGLNLMYFSDLVLQGTA 215
NL+ LV + + E++Q + G+ L+ F +L G A
Sbjct: 379 NLKILV---VMEDITGESRQMADRAGVKLLQFKELEEMGKA 492
>26510
Length = 1692
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Frame = +2
Query: 471 GEICVRGNSLFPGYYKDEEKTKEAIDDQGWLHSGDIGLLLPNGSLKIIDRRKNIFKLSQG 530
GE C+ G GY +++ T + ID GWLH+GD+G + +G + I DR K + K +G
Sbjct: 1277 GEYCMDGPQKMLGYLHNQQATDDMIDRDGWLHTGDLGYMREDGMIIIEDRLKELIKY-KG 1453
Query: 531 EYVAPEKVENIYIRARGVQEAFLFG 555
V P ++E++ + VQ+A + G
Sbjct: 1454 FQVPPAELESLLLSHPAVQDAGVIG 1528
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Frame = +1
Query: 223 DVSPNT-IFTFSYTSGTTGLPKGAMLSHKNFISIIPSLGEI-DINENDSQLCYLPLPHVL 280
D++P+T + Y+SGTTGLPKG MLSH+N ++ I E+ + D L LP H
Sbjct: 682 DINPSTDVLFLPYSSGTTGLPKGVMLSHRNIVANILQFRELANTQPEDRTLGLLPFFH-- 855
Query: 281 QRIFNVVCWYTGTKIAFFGGDILKLK--------DDIQDSKPTLFVSVP 321
I+ + C GT + G +++ + + D K TL +VP
Sbjct: 856 --IYGLTCVQFGT--LYDGAELVTVPRFEPELFLKSLHDRKITLLQAVP 990
>37217
Length = 548
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Frame = -2
Query: 386 IVASGSAPISQEVLDFFKIVLQCP-VYEGYGQTEGTGFQFCTSKYDMNSSGYVGGVCPQL 444
++ G+AP+S+E D K L P + +GYG +E T + G V + +
Sbjct: 331 VLLCGAAPLSRETEDQIKERLGIPFIRQGYGLSEST-LSVLVQNDEHCKPGSVXVLNVGV 155
Query: 445 EMKLIDVPEMNYFSTDKNEKGENIPRGEICVRGNSLFPGYYKDEEKTKEAIDDQGWLHSG 504
K+ID + ++ RGE+C +G + GY D+ T+ I D GWLH+G
Sbjct: 154 YAKVIDPDTGKHLGANE--------RGELCFKGPGIMKGYIGDKRSTQTTIKD-GWLHTG 2
>13327
Length = 549
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +3
Query: 500 WLHSGDIGLLLPNGSLKIIDRRKNIFKLSQGEYVAPEKVENIYIRARGVQEAFLFG 555
WL SGD+G +G L I+DR+K + K + E V P +E++ + G+ +A + G
Sbjct: 3 WLDSGDVGYFDSDGFLYIVDRKKELIKF-KAEQVPPAMLEDVLLTHPGISDAAVIG 167
>00262
Length = 1036
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = -1
Query: 471 GEICVRGNSLFPGYYKDEEKTKEAIDDQGWLHSGDIGLLLPNGSLKIIDRRKNIFKLSQG 530
GEI + +L+ Y ++E K++ GW + D+G N II + +++G
Sbjct: 910 GEIIAKSPALYSRYIDNDEAAKKSFTPDGWFRTDDMGCF--NQDKHIIHLGRRTDAITRG 737
Query: 531 EYVA-PEKVENIYIRARGVQEAFLFGDS---LQNYCVAILVPNPD-EIKKIAAELNVNAD 585
Y+ P +E + R+ V++ + + L + A ++PN D + A L AD
Sbjct: 736 AYLCYPGWLETLLRRSPSVRDVCVVPVADPVLHHEICACVIPNDDPPVADFEASLRTFAD 557
>14264
Length = 1790
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -3
Query: 220 LPNDVSPNTIFTFSYTSGTTGLPKGAMLSHKNFISIIPSLGEIDINENDSQLCYLPLPHV 279
L + ++ +TI + YTSGTTGLPK + K + +D+ D LPL H+
Sbjct: 1062 LRSQMTDDTIGVYIYTSGTTGLPKPVYYNQKKLKMFTTTAQLLDVTTQDIVYTVLPLYHI 883
>19187
Length = 742
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +2
Query: 458 STDKNEKGENIPRGEICVRGNSLFPGYYKDEEKTKEAIDDQGWLHSGDIGLLLPNGSLKI 517
ST E+G+ GEI + +L+ Y ++E K++ GW + D+G + +
Sbjct: 419 STRCGERGQT---GEIIAKSPALYSRYIDNDEAAKKSFTPDGWFRTDDMGCFNQDKHIIH 589
Query: 518 IDRRKNIFKLSQGEYVA-PEKVENIYIRARGVQEAFL 553
+ RR + +++G Y+ P +E + + V++ +
Sbjct: 590 LGRRTD--AITRGAYLCYPGWLETLLRHSPSVRDVCV 694
>22123
Length = 347
Score = 27.7 bits (60), Expect(2) = 0.54, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 470 RGEICVRGNSLFPGYYKDEEKTKEAIDDQG 499
+G++ RG + GY+K+ + T + ID QG
Sbjct: 196 QGDLYKRGXLIMRGYHKNPQATADTIDAQG 285
Score = 23.5 bits (49), Expect(2) = 0.54, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 501 LHSGDIGLLLPNGSLKIIDR 520
L +GD+G NG L I+DR
Sbjct: 288 LKTGDVGQFDSNGFLYIVDR 347
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|310872|gb|AAC37292.1|_histone_H2A.1_[Tetrahymena_thermophila]
(133 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
20291 134 2e-32
08040 122 5e-29
18891 99 4e-22
11785 90 2e-19
13917 90 3e-19
30312 58 1e-09
11323 26 4.5
>20291
Length = 816
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 75/105 (71%)
Frame = -2
Query: 21 SRSARAGLQFPVGRISRFLKNGRYSERIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDNKK 80
SRS+RAGLQFPVGRI R L+ G Y+ER+G GAP GNAA+DNKK
Sbjct: 326 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 147
Query: 81 TRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125
TRI+PRH+ LAIRNDEELNKL++ TIA GGVLPNI +LLP K+
Sbjct: 146 TRIIPRHLQLAIRNDEELNKLLSGFTIAQGGVLPNIQAVLLPKKS 12
>08040
Length = 1157
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 67/96 (69%)
Frame = +2
Query: 27 GLQFPVGRISRFLKNGRYSERIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDNKKTRIVPR 86
GLQFPVGRI R L+ G Y+ER+G GAP GNAA+DNKKTRI+PR
Sbjct: 479 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPR 658
Query: 87 HILLAIRNDEELNKLMANTTIADGGVLPNINPMLLP 122
H+ LAIRNDEELNKL++ TIA GGVLPNI +LLP
Sbjct: 659 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLP 766
>18891
Length = 477
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 60/98 (61%)
Frame = -1
Query: 19 QVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDN 78
QVSRSARAG+ FPV R+ R+LK + R+G+G P GNAA+D
Sbjct: 462 QVSRSARAGVLFPVARMLRYLKRDTHHLRVGSGTPVYMAAVIEYLTAEILELAGNAARDF 283
Query: 79 KKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNI 116
K+ RI PRHILLA+RNDEEL+ L TI GGVLP +
Sbjct: 282 KRGRITPRHILLAVRNDEELDVLFKKVTIPQGGVLPKL 169
>11785
Length = 948
Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = +2
Query: 20 VSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDN 78
VSRSARAGLQFPVGRI R LK S R+G A GNA+KD
Sbjct: 461 VSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 640
Query: 79 KKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK 124
K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ K
Sbjct: 641 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 775
>13917
Length = 1561
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = +1
Query: 20 VSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDN 78
VSRSARAGLQFPVGRI R LK S R+G A GNA+KD
Sbjct: 220 VSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 399
Query: 79 KKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK 124
K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ K
Sbjct: 400 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 534
>30312
Length = 409
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = +3
Query: 72 GNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK 124
GNA+KD K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ K
Sbjct: 153 GNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 308
>11323
Length = 1141
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 77 DNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGV 112
D++K++ PRH+ L + + N TIA G +
Sbjct: 320 DSRKSKPKPRHVFLFFQKTQYFNTNTXXXTIAVGLI 427
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|462230|sp|P35065.2|H2A2_TETTH_RecName:_Full=Histone_H2A.2
(133 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
20291 134 2e-32
08040 122 5e-29
18891 99 4e-22
11785 90 2e-19
13917 90 3e-19
30312 58 1e-09
11323 26 4.5
>20291
Length = 816
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 75/105 (71%)
Frame = -2
Query: 21 SRSARAGLQFPVGRISRFLKNGRYSERIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDNKK 80
SRS+RAGLQFPVGRI R L+ G Y+ER+G GAP GNAA+DNKK
Sbjct: 326 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK 147
Query: 81 TRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125
TRI+PRH+ LAIRNDEELNKL++ TIA GGVLPNI +LLP K+
Sbjct: 146 TRIIPRHLQLAIRNDEELNKLLSGFTIAQGGVLPNIQAVLLPKKS 12
>08040
Length = 1157
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 67/96 (69%)
Frame = +2
Query: 27 GLQFPVGRISRFLKNGRYSERIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDNKKTRIVPR 86
GLQFPVGRI R L+ G Y+ER+G GAP GNAA+DNKKTRI+PR
Sbjct: 479 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPR 658
Query: 87 HILLAIRNDEELNKLMANTTIADGGVLPNINPMLLP 122
H+ LAIRNDEELNKL++ TIA GGVLPNI +LLP
Sbjct: 659 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLP 766
>18891
Length = 477
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 60/98 (61%)
Frame = -1
Query: 19 QVSRSARAGLQFPVGRISRFLKNGRYSERIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDN 78
QVSRSARAG+ FPV R+ R+LK + R+G+G P GNAA+D
Sbjct: 462 QVSRSARAGVLFPVARMLRYLKRDTHHLRVGSGTPVYMAAVIEYLTAEILELAGNAARDF 283
Query: 79 KKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNI 116
K+ RI PRHILLA+RNDEEL+ L TI GGVLP +
Sbjct: 282 KRGRITPRHILLAVRNDEELDVLFKKVTIPQGGVLPKL 169
>11785
Length = 948
Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = +2
Query: 20 VSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDN 78
VSRSARAGLQFPVGRI R LK S R+G A GNA+KD
Sbjct: 461 VSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 640
Query: 79 KKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK 124
K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ K
Sbjct: 641 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 775
>13917
Length = 1561
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = +1
Query: 20 VSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPXXXXXXXXXXXXXXXXXXGNAAKDN 78
VSRSARAGLQFPVGRI R LK S R+G A GNA+KD
Sbjct: 220 VSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 399
Query: 79 KKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK 124
K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ K
Sbjct: 400 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 534
>30312
Length = 409
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = +3
Query: 72 GNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSK 124
GNA+KD K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ K
Sbjct: 153 GNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 308
>11323
Length = 1141
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 77 DNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGV 112
D++K++ PRH+ L + + N TIA G +
Sbjct: 320 DSRKSKPKPRHVFLFFQKTQYFNTNTXXXTIAVGLI 427
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00929450__3752.m00301phosphoglycerate_kinase_family_protein
(420 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
31336 111 2e-32
05502 42 5e-04
>31336
Length = 655
Score = 111 bits (277), Expect(2) = 2e-32, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 64/86 (74%)
Frame = +1
Query: 191 KRELDYFSKALESPNRPFLVVLGGAKVKDKIQLIESMLDKVDEMIIGGGMAFTFLKKIHN 250
KR K +P RPFL +LGGAKV DKIQLIE++LDKV+EMI GGGMAFTFLK +
Sbjct: 157 KRSFSTLPKPWTTPERPFLAILGGAKVADKIQLIENLLDKVNEMIXGGGMAFTFLKVLEE 336
Query: 251 IEIGNSLFDEEGYKIVDQLLEKAKAK 276
++IG SLFDE G KIV L+EKAK +
Sbjct: 337 MKIGASLFDEAGSKIVKDLMEKAKKR 414
Score = 45.8 bits (107), Expect(2) = 2e-32, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +3
Query: 272 KAKAKNVKIHLPVDFLCGDSLEANANTRSFDLKSGIPAGWIGLDAGPKTMAEN 324
+++ KNV+IHLP DF+ GD + NA + + +GIP G +GLD G K+ + N
Sbjct: 399 ESQEKNVQIHLPEDFVTGDKFDENAAVGTATVAAGIPDGCMGLDVGRKSQSLN 557
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Frame = +2
Query: 140 VKADSKAVKEFRKSLTSLGDLFVNDAFGTAHRAHSSMVGVDHKIRAAGYLLKRELDYFSK 199
+KA V++FR SL+ LGD+++NDAFGTAHRAHSSMVG +A+G+LLK+
Sbjct: 2 IKASEAEVEKFRASLSKLGDVYINDAFGTAHRAHSSMVGCQLAQKASGFLLKKGASVL-- 175
Query: 200 ALESPNRPF 208
+SP +P
Sbjct: 176 -CQSPGQPL 199
>05502
Length = 631
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -2
Query: 393 STGGGASLELLEGKVLPGVAYLTD 416
STGGGASLELLEGK LPGVA L+D
Sbjct: 630 STGGGASLELLEGKNLPGVAALSD 559
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00158210__3829.m01224Proteasome_A-type_and_B-
type_family_protein
(252 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
19133 134 4e-32
02448 118 2e-27
24591 118 2e-27
17033 109 9e-25
20771 106 1e-23
14551 99 1e-21
00789 95 3e-20
04255 61 2e-15
09721 45 3e-05
28971 43 1e-04
14706 31 0.50
11023 28 3.8
>19133
Length = 692
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Frame = +1
Query: 79 ITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKISEKSQHKTQTYGKRPYGVGTLIIA 138
+TADAR++C +M+TECL+ ++ Y P RLV I K Q T YG+RP+GVG LI
Sbjct: 1 LTADARLLCNFMQTECLDSRWAYQQPLPVSRLVSAIGNKLQIPTHRYGRRPFGVGLLIAG 180
Query: 139 QESDGPKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENNLELFKDCNDLNTLILHGLSAL 198
+ GP ++QT PS ++Y+ +IG+RSQ+A+TYLE +L+ F C+ L+ L+ HGL AL
Sbjct: 181 YDWSGPHIYQTCPSANYYDCKAMAIGARSQSARTYLERHLDQFPQCS-LDELVKHGLRAL 357
Query: 199 KKANQGEEELLPQSVDIAFVGLESNFTLLSEDRVLSYL 236
+ E L ++ + V + F + ++ V SYL
Sbjct: 358 RDTLPSEVTLSTKNCSLGIVDKDMKFKIYDDENVASYL 471
>02448
Length = 1302
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 3/232 (1%)
Frame = +2
Query: 8 YDTDCSTWSTNGKLLQVDYATKAIDQGSITIGLRSQKFAVLVAQKRSNSKLSGYQ--EKI 65
YD + +S +G L QV+YA +A+ +GS +G+R VL +K++ +KL + KI
Sbjct: 263 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNLVVLGVEKKAVAKLQEERTVRKI 442
Query: 66 FQVDDKIGMGVAGITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKISEKSQHKTQTY 125
+D+ + + AG+TADAR++ R EC +HK + + I++ Q TQ+
Sbjct: 443 ALLDEHVALAFAGLTADARILINRARIECQSHKLTVEDPVTVEYITRHIAQLKQKYTQSN 622
Query: 126 GKRPYGVGTLIIAQESDG-PKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENNLELFKDC 184
G+RP+G+ +LII + DG P L+QT PSG ++E+ +IG ++ + +LE +
Sbjct: 623 GRRPFGLSSLIIGFDYDGSPHLYQTDPSGTYHEWKANTIGRNAKTVREFLEKHYTDEVAA 802
Query: 185 NDLNTLILHGLSALKKANQGEEELLPQSVDIAFVGLESNFTLLSEDRVLSYL 236
+D T+ L L AL + Q +++++A + +L D + Y+
Sbjct: 803 SDKETIKL-ALKALLEVVQSG----AKNMEVAVMRRGQALQMLESDEIEKYI 943
>24591
Length = 1801
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 3/232 (1%)
Frame = +1
Query: 8 YDTDCSTWSTNGKLLQVDYATKAIDQGSITIGLRSQKFAVLVAQKRSNSKLSGYQ--EKI 65
YD + +S +G L QV+YA +A+ +GS +G+R VL +K++ +KL + KI
Sbjct: 40 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGDNLVVLGVEKKAVAKLQEERTVRKI 219
Query: 66 FQVDDKIGMGVAGITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKISEKSQHKTQTY 125
+D+ + + AG+TADAR++ R EC +HK + + I++ Q TQ+
Sbjct: 220 ALLDEHVALAFAGLTADARILINRARIECQSHKLTVEDPVTVEYITRHIAQLKQKYTQSN 399
Query: 126 GKRPYGVGTLIIAQESDG-PKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENNLELFKDC 184
G+RP+G+ +LII + DG P L+QT PSG ++E+ +IG ++ + +LE +
Sbjct: 400 GRRPFGLSSLIIGFDYDGTPHLYQTDPSGTYHEWKANTIGRNAKTVREFLEKHYTDEVAA 579
Query: 185 NDLNTLILHGLSALKKANQGEEELLPQSVDIAFVGLESNFTLLSEDRVLSYL 236
+D T+ L L AL + Q +++++A + +L D + Y+
Sbjct: 580 SDKETIKL-ALKALLEVVQSG----AKNMEVAVMRRGQALQMLESDEIEKYI 720
>17033
Length = 2217
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 19/232 (8%)
Frame = -3
Query: 1 MSSNINLYDTDCSTWSTNGKLLQVDYATKAIDQGSITIGLRSQKFAVLVAQKRSNSKL-- 58
MSS YD S +S +G++ QV+YA KA++ IG+R + V+ +K SKL
Sbjct: 2170 MSSIGTGYDLSASHFSPDGRVFQVEYAQKAVENSGTAIGIRGKDGVVMGVEKLVTSKLYE 1991
Query: 59 SGYQEKIFQVDDKIGMGVAGITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKISEKS 118
G +++F +D IG VAG+ ADAR + + + E N+++ YGS P + L +++
Sbjct: 1990 QGANKRLFNIDRHIGGAVAGLLADARQLMERAKEESSNYRFNYGSPVPLKYLTDRVAGYV 1811
Query: 119 QHKTQTYGKRPYGVGTLIIAQESDGPKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLE--- 175
T RP+G ++ + ++ GP++F PSG + +YG +IG Q AKT +E
Sbjct: 1810 HAYTLHSAVRPFGTSMIVASYDAVGPQMFLVEPSGVSWGYYGCAIGKAKQTAKTEIEKLK 1631
Query: 176 ----NNLELFKDCNDLNTLILHG----------LSALKKANQGEEELLPQSV 213
+L K+ + ++H LS + +A G+ +L+P+ V
Sbjct: 1630 MKDLTMQDLVKEVARI-IYVVHDEVKDKSFELELSWVGEATGGKHQLVPKDV 1478
>20771
Length = 674
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Frame = +2
Query: 8 YDTDCSTWSTNGKLLQVDYATKAIDQGSITIGLRSQKFAVLVAQKRSNSKL--SGYQEKI 65
YD +T+S G+L QV+YA +AI GS IG+++ + VL +KR S L EKI
Sbjct: 101 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTNEGVVLAVEKRVTSSLIEPTSIEKI 280
Query: 66 FQVDDKIGMGVAGITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKISEKS-----QH 120
+VD IG ++G+ AD+R + R E NH + Y + + +S +
Sbjct: 281 MEVDKHIGCAMSGLIADSRTLIDRARVEAQNHWFTYNENMSVESVTQAVSNLALAFGDDD 460
Query: 121 KTQTYGKRPYGVGTLIIAQESDGPKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLE 175
RP+GV LI +S+GP+LF PSG F ++ ++IGS S+ A+ L+
Sbjct: 461 PDPGAMSRPFGVALLIAGVDSNGPRLFHMDPSGTFIQYDAKAIGSGSEGAQQALQ 625
>14551
Length = 1344
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 120/241 (49%), Gaps = 6/241 (2%)
Frame = +3
Query: 8 YDTDCSTWSTNGKLLQVDYATKAIDQGSITIGLRSQKFAVLVAQKRSNSKLSGYQE---- 63
Y +T+S +GKL+Q++YA A+ G+ ++G+++ VL +K+ S Y E
Sbjct: 153 YSFSLTTFSPSGKLVQIEYALAAVGAGAPSVGIKATNGVVLATEKKQKS--VXYDEHSIN 326
Query: 64 KIFQVDDKIGMGVAGITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKISEKSQHKTQ 123
K+ + IG+ +G+ D RV+C+ R +K VY Q P +LV +++ Q TQ
Sbjct: 327 KVETITKNIGIVYSGMGPDYRVLCRRARKLAEQYKRVYNEQIPTAQLVQRVAAVMQEFTQ 506
Query: 124 TYGKRPYGVGTLIIAQESDG--PKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENNLELF 181
+ G RP+GV L+ + D P L+Q PSG ++ + ++G KT+LE +
Sbjct: 507 SGGVRPFGVSLLMAGWDEDDKKPFLYQCDPSGAYFAWKATAMGKNHINGKTFLEKR---Y 677
Query: 182 KDCNDLNTLILHGLSALKKANQGEEELLPQSVDIAFVGLESNFTLLSEDRVLSYLQQLDT 241
+ +L + + ALK++ +G ++ +++I S F L + YL +
Sbjct: 678 SETLELEDAVHTAILALKESFEG--QMTEDNIEIGICN-SSGFRRLEPSEIKDYLASVS* 848
Query: 242 F 242
F
Sbjct: 849 F 851
>00789
Length = 1584
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 118/225 (52%), Gaps = 4/225 (1%)
Frame = +1
Query: 8 YDTDCSTWSTNGKLLQVDYATKAIDQGSITIGLRSQKFAVLVAQKRSNSKL---SGYQEK 64
YD+ + +S G+L QV+YA +AI +G+ ++ VL A++R+ +KL Y EK
Sbjct: 34 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILAKDGIVLAAERRNTNKLLDEVSYSEK 213
Query: 65 IFQVDDKIGMGVAGITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKISEKSQHKTQT 124
I+++ D + VAGIT+DA V+ +R + Y P +++V + + Q TQ
Sbjct: 214 IYRLSDDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQVVATLCDIKQAYTQF 393
Query: 125 YGKRPYGVGTLIIAQESD-GPKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENNLELFKD 183
GKRP+GV L + + G +L+Q+ PSG++ + IG+ S A + L+ E +D
Sbjct: 394 GGKRPFGVSILYMGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSANAVSLLKQ--EYKED 567
Query: 184 CNDLNTLILHGLSALKKANQGEEELLPQSVDIAFVGLESNFTLLS 228
+ L+ + + L K +L P V++A + + T+++
Sbjct: 568 ESSLDEALALSIKVLGK-TLDLTKLTPDKVEMATLTRKDGKTVMT 699
>04255
Length = 1758
Score = 61.2 bits (147), Expect(2) = 2e-15, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 4/169 (2%)
Frame = -2
Query: 65 IFQVDDKIGMGVAGITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKISEKSQHKTQT 124
++ + ++IG + G+ AD++ + R E KY YG P L +I+ +Q TQ+
Sbjct: 1427 LYSLTERIGCVMTGMIADSQSQVQRARYEAAKWKYTYGYDIPVDMLCKRIANINQVYTQS 1248
Query: 125 YGKRPYGVGTLIIAQESD-GPKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENNLELFKD 183
RP G ++I + + GP++++T P+G + F S GS+ A +LE ++ +D
Sbjct: 1247 AEMRPLGCCMILIGYDDEKGPEVYKTDPAGYYCGFKATSAGSKQLEANGFLEKKIKKKQD 1068
Query: 184 C--NDLNTLILHGLSALKKANQGEEELLPQSVDIAFVGLES-NFTLLSE 229
N+ + + LS + A+ E V++ V ++ NF +L+E
Sbjct: 1067 FTYNEAAEIAITCLSTVLSADFKASE-----VEVGIVTKDNPNFRILTE 936
Score = 38.1 bits (87), Expect(2) = 2e-15, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -3
Query: 16 STNGKLLQVDYATKAIDQGSIT-IGLRSQKFAVLVAQKR 53
S G+L QV+YA KAI+QG +T + +R + AV+V QK+
Sbjct: 1582 SPEGRLYQVEYAFKAINQGGLTSVAVRGKDSAVIVTQKK 1466
>09721
Length = 919
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -1
Query: 79 ITADARVICKYMRTECLNHKYVYGSQHPAQRLVIKI 114
+TADAR++C +M+TECL+ ++ Y P RLV I
Sbjct: 919 LTADARLLCNFMQTECLDSRWAYQQPLPVSRLVSAI 812
>28971
Length = 437
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +1
Query: 119 QHKTQTYGKRPYGVGTLIIAQESDGPKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENNL 178
Q TQ+ G RP+GV LI +++ P L+Q+ PSG ++ + ++G + K +L L
Sbjct: 4 QEYTQSGGVRPFGVSLLICGWDNERPYLYQSDPSGAYFAWKATAMGKNAVNGKNFLGKAL 183
>14706
Length = 1355
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 142 DGPKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENNL 178
D PK + P G + YG S+ ++A K +LE+N+
Sbjct: 419 DSPKRVASPPPGLSQQRYGHSLLEETRAQKRHLEDNI 529
>11023
Length = 1057
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 135 LIIAQESDGPKLFQTLPSGDFYEFYGQSIGSRSQAAKTYLENN 177
LI + GP++++T P+G + F S GS+ A +LE
Sbjct: 990 LIGYDDEKGPEVYKTDPAGYYCGFKATSAGSKQLEANGFLEKR 862
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00641150__92.m00126Papain_family_cysteine_protease_containin
g_protein
(341 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
17495 132 3e-31
04499 120 1e-27
25422 105 2e-23
14999 83 2e-16
00131 82 2e-16
08974 80 1e-15
25989 76 2e-14
15855 55 3e-08
39186 54 6e-08
16373 54 9e-08
03747 54 1e-07
26028 53 2e-07
22371 50 9e-07
19751 49 3e-06
25728 46 2e-05
05910 44 1e-04
02978 43 2e-04
11639 42 2e-04
18223 42 3e-04
03419 33 0.097
13860 33 0.19
15060 28 5.4
>17495
Length = 643
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 14/176 (7%)
Frame = -3
Query: 39 QLAEEVNNANTTWKAGENIKWINADIAGVKAHLGALEGDNGEN----LPVSNAV------ 88
+ E V N TW+AG N D+ + H+ AL G + ++ LP V
Sbjct: 512 EFIELVRNKAKTWQAGRNF-----DVTVSEHHIRALMGVHPDSHKFTLPEKREVLGNPLL 348
Query: 89 --KADLPTAFDARQQWGDKCTSLWEVRDQSNCGSCWAFGAVESLTDRHCIHLGQDI--RL 144
D+P FDAR W + C ++ E+RDQ +CGSCWAFGAVE+++DR CIH +
Sbjct: 347 ADGGDIPEEFDARTAWPN-CPTIGEIRDQGSCGSCWAFGAVEAMSDRVCIHSNATVNFHF 171
Query: 145 SAQNMLTCCATCGQGCNGGYPASAMSYYVKTGLVTGDLYNTTGWCQAYSFAPCAHH 200
SA ++++CC TCG GCNGG+P +A SY+ G+V+G Y + C+ Y PC HH
Sbjct: 170 SADDLVSCCHTCGFGCNGGFPGAAWSYWTTKGIVSGGSYASKEGCRPYEVEPCEHH 3
>04499
Length = 2081
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Frame = +3
Query: 225 GSGQTYTVHK--GSKAYSVGKTQEAIMTEIQTNGPVEAAFTVYEDFLNYKSGVYKHVTGK 282
G TY K G Y+V + + E+ +GP E +F VY DFL+Y+SGVYKHVTG
Sbjct: 3 GYNNTYQEDKIYGQDVYTV-VGPDCMQAELIAHGPFEVSFDVYSDFLSYESGVYKHVTGD 179
Query: 283 ALGGHAIKIVGWGVENNTPYWIVVNSWNQTWGDNGTFKILRGKNECGIEAQVVTALP 339
LG HA+K++GWG++ PYW+V NSWN WGDNG FKI+RG + C IE + V P
Sbjct: 180 YLGMHAVKMMGWGLQAGVPYWLVANSWNTDWGDNGYFKIMRGIDMCRIEEEPVAGTP 350
>25422
Length = 532
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Frame = +2
Query: 52 KAGENIKWINADIAGVKAHLGALEGDNGENLPVSN--AVKADLPTAFDARQQWGDKCTSL 109
+AG+ +W+ DI +A L + + LPV LP FD R +W + C +L
Sbjct: 20 RAGDVKRWLGVDI---QASLSFAK----KALPVKTFPETSVPLPDNFDPRTKWTN-CPTL 175
Query: 110 WEVRDQSNCGSCWAFGAVESLTDRHCI--HLGQDIRLSAQNMLTCCATCGQGCNGGYPAS 167
EVRDQ NCGSCWAFGAVE++TDR CI + Q LSA+++L+CC TCG GCNGGYP +
Sbjct: 176 KEVRDQGNCGSCWAFGAVEAMTDRICILSNGTQHAHLSAEDLLSCCXTCGNGCNGGYPGA 355
Query: 168 AMSYYVKTGLVTGDLYNTTGWCQAYSFAPCAHHVDTPLYPACTGELPTPKCAKTCDS 224
A + KT T + + CTG+ TP C+K C++
Sbjct: 356 AWEFS-KTLAS*PAXSTTVSRAASRTR*RRXTTTWWATSSPCTGDSKTPSCSKQCEA 523
>14999
Length = 796
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 9/108 (8%)
Frame = +2
Query: 242 GKTQEAIMT-EIQTNGPVEAAFTVYEDFLNYKSGVYKH--VTGK----ALGGHAIKIVGW 294
G E +M + NGP+ F V DF+ YKSG+Y H +TG L HA+ +VG+
Sbjct: 119 GACNEPLMRLALYENGPLAVGFLVLSDFMQYKSGIYHHTGLTGPFNPFELTNHAVLVVGY 298
Query: 295 GVENNT--PYWIVVNSWNQTWGDNGTFKILRGKNECGIEAQVVTALPL 340
G + T YWI NSW + WG+ G F+I R +ECG E+ V + P+
Sbjct: 299 GADKTTGEKYWITKNSWGEGWGEKGFFRIRRDNDECGFESMAVQSTPI 442
>00131
Length = 1971
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 104/251 (41%), Gaps = 9/251 (3%)
Frame = +1
Query: 92 LPTAFDARQQWGDKCTSLWEVRDQSNCGSCWAFGAVESLTDRHCIHLGQDIRLSAQNMLT 151
LP D R Q + V+DQ +CGS WAF A +L +H G + LS Q ++
Sbjct: 244 LPAFIDWRTQ-----GYVTPVKDQGSCGSGWAFSATGTLEGQHFRKTGDLLSLSEQQLID 408
Query: 152 CCATCGQ---GCNGGYPASAMSYYV--KTGLVTGDLYNTTGWCQAYSFAPCAHHVDTPLY 206
C + GQ GCNGG +A Y + GL + D Y G+ FA C+ D
Sbjct: 409 C--SVGQENNGCNGGLADNAYDYIMTQDNGLESEDDYPYLGY-----FAYCSTDPDKE-- 561
Query: 207 PACTGELPTPKCAKTCDSGSGQTYTVHKGSKAYSVGKTQEAIMTEIQTNGPVEAAF-TVY 265
K D Y A+M + GPV
Sbjct: 562 --------QAKVTGCADVEPMDEY----------------ALMDAVAAIGPVAIVIDAAL 669
Query: 266 EDFLNYKSGVYKHVT-GKALGGHAIKIVGWG-VENNTPYWIVVNSWNQTWGDNGTFKILR 323
E F +Y GVY + + + GHA+ VG+G + + YWIV NSW WG NG I R
Sbjct: 670 ETFQSYSEGVYNDPSCSEIIIGHAVLAVGYGTLMDGREYWIVKNSWGTDWGMNGYILIAR 849
Query: 324 GK-NECGIEAQ 333
K N CG+ ++
Sbjct: 850 NKGNMCGVASE 882
>08974
Length = 1670
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 90/220 (40%), Gaps = 13/220 (5%)
Frame = -1
Query: 111 EVRDQSNCGSCWAFGAVESLTDRHCIHLGQDIRLSAQNMLTCCATCG-QGCNGGYPASAM 169
EV++Q CGSCWAF S+ +H G + LS Q ++ C + G QGCNGGY A
Sbjct: 1166 EVKNQGECGSCWAFSTTGSVEGQHFKESGNLVSLSEQQLVDCSKSGGNQGCNGGYMDQAF 987
Query: 170 SYYVKT--GLVTGDLYN---TTGWCQAYS---FAPCAHHVDTPLYPACTGELPTPKCAKT 221
Y + T GL+ Y G C A S AP + VD P
Sbjct: 986 EYIMNTPGGLMXEADYPYLAIDGVCTAVSQKGVAPISGCVDIP----------------- 858
Query: 222 CDSGSGQTYTVHKGSKAYSVGKTQEAIMTEIQTNGPVEAAFTVYE-DFLNYKSGVYKHVT 280
SG ++++ GP+ A F++Y GVY
Sbjct: 857 --SG------------------VEDSLQGAAAQVGPISVAIDASSLSFMSYSGGVYNDPY 738
Query: 281 GKALGG---HAIKIVGWGVENNTPYWIVVNSWNQTWGDNG 317
+ G H + +VG+G T YW+V NSW+ WG NG
Sbjct: 737 CRNTAGDLNHGVLVVGYGTYQGTDYWLVKNSWSTDWGMNG 618
>25989
Length = 800
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 40/59 (67%)
Frame = -2
Query: 281 GKALGGHAIKIVGWGVENNTPYWIVVNSWNQTWGDNGTFKILRGKNECGIEAQVVTALP 339
G G + VG+GVE YW+V NSWN WGDNG FKILRG +ECGIE+QVV LP
Sbjct: 622 GLNWGAMPSRSVGYGVEGGQKYWLVANSWNPDWGDNGFFKILRGVDECGIESQVVAGLP 446
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 35/47 (74%)
Frame = -1
Query: 248 IMTEIQTNGPVEAAFTVYEDFLNYKSGVYKHVTGKALGGHAIKIVGW 294
I E+ TNGPVEAAF+VY DFL YKSGVY H G LGGHAIKI G
Sbjct: 722 IKRELVTNGPVEAAFSVYSDFLQYKSGVYAHTAGSELGGHAIKIRGL 582
>15855
Length = 2959
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 3/203 (1%)
Frame = -3
Query: 139 GQDIRLSAQNMLTCCATCGQGCNGGYPASAMSYYVKTGLVTGDLYNTTGWCQAYSFAPCA 198
G+ + LS Q ++ C + QGCNGG P++A +K G + + AYS+
Sbjct: 2879 GKLVSLSEQELVDC-DSLDQGCNGGLPSNAYEAIMKLGGLESE--------TAYSYKG-- 2733
Query: 199 HHVDTPLYPACTGELPTPKCAKTCDSGSGQTYTVHKGSKAYSVGKTQEAIMTEIQTNGPV 258
KC ++ K + ++ ++ + + NGP+
Sbjct: 2732 ---------------NDEKCHFN------RSKVAVKINGGLNISSNEDEMKAWLAQNGPI 2616
Query: 259 EAAFTVY--EDFLNYKSGVYKHVTGKALGGHAIKIVGWGVENN-TPYWIVVNSWNQTWGD 315
+ + + S +K H + IVG+ V + PYWI+ NSW WG+
Sbjct: 2615 SIGINAFAMQFYFGGISHPWKIFCNPDKLDHGVLIVGYDVSSKGEPYWIIKNSWGPDWGE 2436
Query: 316 NGTFKILRGKNECGIEAQVVTAL 338
G + + RG CG+ +A+
Sbjct: 2435 KGYYLVYRGSGVCGLNQMCTSAI 2367
>39186
Length = 728
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = -1
Query: 245 QEAIMTEIQTNGPVEAAF-TVYEDFLNYKSGVYKHVT-GKALGGHAIKIVGWG-VENNTP 301
+ A+M + GPV E F +Y GVY + + + GHA+ VG+G + +
Sbjct: 716 EYALMDAVAAIGPVAIVIDAALETFQSYSEGVYNDPSCSEIIIGHAVLAVGYGTLMDGRE 537
Query: 302 YWIVVNSWNQTWGDNGTFKILRGK-NECGIEAQ 333
YWIV NSW WG NG I R K N CG+ ++
Sbjct: 536 YWIVKNSWGTDWGMNGYILIARNKGNMCGVASE 438
>16373
Length = 996
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = -2
Query: 244 TQEAIMTEIQTNGPVEAAFTV-YEDFLNYKSGVYKHVTGKALGGHAIKIVGWGVENNTPY 302
++ A+ + T GPV + FL+Y SGVY + HA+ +VG+G + Y
Sbjct: 731 SEAALQQALATVGPVSVGIDADHHSFLSYSSGVYYQPSCYHDINHAVLVVGYGTFQSQQY 552
Query: 303 WIVVNSWNQTWGDNGTFKILRGK-NECGIEA 332
W+V NSW WG G + R + N C I +
Sbjct: 551 WLVKNSWGVDWGMXGYIMMARNRDNMCSIAS 459
>03747
Length = 1915
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +3
Query: 256 GPVEAAFTV-YEDFLNYKSGVYKHVTGKALG-GHAIKIVGWGVENNTPYWIVVNSWNQTW 313
GPV A ++ F Y GVY + H + VG+G E+ +W+V NSW +W
Sbjct: 183 GPVSVAIDASHQSFQMYDGGVYDEPECSSTQLDHGVLAVGYGSEDGKEFWLVKNSWGLSW 362
Query: 314 GDNGTFKILRGK-NECGI 330
G+ G K+ R K N+CGI
Sbjct: 363 GEKGYIKMSRDKSNQCGI 416
>26028
Length = 414
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Frame = -3
Query: 243 KTQEAIMTE-IQTNGPVEAAFTVYEDFLNYKSGV---YKHVTGKALGGHAIKIVGWGVEN 298
K E M E + +GP+ Y+ GV + + K H + +VG+GV +
Sbjct: 364 KGNETAMQEWLLAHGPISIGINA-NAMQFYRGGVSHPWSPLCSKKNLDHGVLVVGYGVSD 188
Query: 299 ------NTPYWIVVNSWNQTWGDNGTFKILRGKNECGIEAQVVTAL 338
PYWIV NSW WG+ G +++ RG N CG+ +A+
Sbjct: 187 YPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAV 50
>22371
Length = 435
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%)
Frame = +2
Query: 245 QEAIMTEIQTNGPVEAAFTVYEDFLNYKSGVYKHVTGKALGGHAIKIVGWGVENNTPYWI 304
+E I++ + + GPV AA + NY G+ + + HA+ IVG+ + PY+I
Sbjct: 11 EEQILSLLGSVGPVSAAVDA-TTWHNYVGGIIQFHCENTIN-HAVDIVGYDLTGPVPYYI 184
Query: 305 VVNSWNQTWGDNGTFKILRGKNECGIEAQV 334
V NSW +G +G I G N CGI +V
Sbjct: 185 VRNSWGTDFGMDGYMYIKVGSNLCGIAEEV 274
>19751
Length = 564
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = -1
Query: 84 VSNAVKADLPTAFDARQQWGDKCTSLWEVRDQSNCGSCWAFGAVESLTDRHCIHLGQDIR 143
V A +LP FD RQ+ ++ V++Q CGSCWAF ++ + + G +
Sbjct: 276 VVPAYAGELPKEFDWRQK-----HAVTHVKNQGQCGSCWAFSVTGNIEGLYAVKTGDLME 112
Query: 144 LSAQNMLTCCATCGQGCNGG 163
S Q +L C +T CNGG
Sbjct: 111 FSEQELLDCDST-DSACNGG 55
>25728
Length = 428
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = +1
Query: 268 FLNYKSGVYKHVTGKALGGHAIKIVGWGVENNTPYWIVVNSWNQTWGDNGTFKILRGK 325
F Y GV + G+AL H + VG+G EN T Y IV NSW WGD+G ++ + K
Sbjct: 193 FQFYSHGVLSNGCGEALD-HGVLAVGYGSENGTNYTIVKNSWGAGWGDSGYIRLNQDK 363
>05910
Length = 1151
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 257 PVEAAFTV-YEDFLNYKSGVYKH-VTGKALGGHAIKIVGWGVENNTPYWIVVNSWNQTWG 314
P+ A + F Y+ GVY HA+ +VG+G T YW++ NSWN WG
Sbjct: 2 PISVAIDARFYSFDFYRGGVYNEPYCSNTTMDHAVLLVGYGTYQGTDYWLIKNSWNTAWG 181
Query: 315 DNG-TFKILRGKNECGIEAQ 333
NG N CGI Q
Sbjct: 182 INGYMMMQRNNNNMCGIATQ 241
>02978
Length = 2175
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 287 HAIKIVGWGVENNTPYWIVVNSWNQTWGDNGTFKILRGKNECGI 330
HA+ VG+GV YW+V NSW+ WG++G + + N CG+
Sbjct: 231 HAVLAVGYGVMKGQAYWLVKNSWSTYWGNDGYVLMSQKDNNCGV 362
>11639
Length = 976
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 72/195 (36%), Gaps = 8/195 (4%)
Frame = +1
Query: 92 LPTAFDARQQWGDKCTSLWEVRDQ---SNCGSCWAFGAVESLTDRHCIHLG---QDIRLS 145
LP ++D R G S R+Q CGSCWA G+ SL DR I LS
Sbjct: 382 LPKSWDWRNIKGVNYVS--TTRNQHIPQYCGSCWAMGSTSSLADRINIKRKGAWPSAYLS 555
Query: 146 AQNMLTCCATCGQGCNGGYPASAMSYYVKTGLVTGDLYNTTGWCQAYS-FAPCAHHVDTP 204
Q+++ C C GG +Y G+ N Q S F C
Sbjct: 556 VQDIIDC--GLAGSCEGGDDVGVYAYASTQGIPDETCNNYQAIDQECSTFNRCG------ 711
Query: 205 LYPACTGELPTPKCAKTCDSGSGQTYTVHKGSKAYSV-GKTQEAIMTEIQTNGPVEAAFT 263
+CT E + S YT K S V G+ Q +M EI NGP+
Sbjct: 712 ---SCTPE----------NCYSVNNYTTWKVSDYGPVSGRLQ--MMAEIYQNGPISCGVQ 846
Query: 264 VYEDFLNYKSGVYKH 278
E F NY G+Y
Sbjct: 847 ATETFENYAGGIYSE 891
>18223
Length = 475
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +1
Query: 241 VGKTQEAIMTEIQTNGPVEAAFTVYE-DFLNYKSGV-YKHVTGKALGGHAIKIVGWGV-- 296
V ++ A+ + GP+ A F Y+SGV Y H + +VG+
Sbjct: 142 VPGSEAALEAAVADVGPIAVAIDASSGKFHFYRSGVFYDPCCSSTKLDHGVLVVGYAYSH 321
Query: 297 ENNTPYWIVVNSWNQTWGDNGTFKILRGK-NECGIEAQ 333
E YWIV NSW + WG G + R + N CGI +
Sbjct: 322 EYKQDYWIVKNSWGKKWGMEGYILMARNRQNNCGIASM 435
>03419
Length = 1891
Score = 32.7 bits (73), Expect(2) = 0.097, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 185 TTGWCQAYSFAPCAHHVDTPLYPACTGELPTPKCAKTCDSGSGQTYT-VHKGSK 237
TT WC A S AP A TP PAC PTP SGQ +T H G +
Sbjct: 1421 TTAWCAAPSLAPVASL--TPSLPACLPTFPTPPQ-------SGQRFTPPHSGQR 1287
Score = 20.0 bits (40), Expect(2) = 0.097, Method: Compositional matrix adjust.
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -2
Query: 275 VYKHVTGKALGGHAIKIVGW 294
V+ H+T + G A+ +GW
Sbjct: 1179 VWGHLTQWGIAGWALPFMGW 1120
>13860
Length = 470
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 112 VRDQSNCGSCWAFGAVESLTDRHCIHLG 139
V++Q CGSCW F + SL RH G
Sbjct: 376 VKNQGQCGSCWTFSSTGSLEGRHFQKTG 459
>15060
Length = 935
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 196 PCAHHVDTPLYPACTGE 212
PC HH +TPLY C E
Sbjct: 76 PCLHHCETPLYAQCRAE 126
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00577240__3812.m02699L1P_family_of_ribosomal_proteins_contai
ning_protein
(215 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
16617 129 7e-31
28140 84 5e-17
10829 34 0.054
24577 32 0.15
15001 28 3.5
05036 27 6.3
00075 27 6.6
06399 27 7.8
>16617
Length = 1179
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 117/174 (67%)
Frame = -1
Query: 41 DKDKRFTGSIKLPNMPYPNKKIAIIGTMRHCEEAKAAGIACIDTEGLKKFNKEPKLIKKW 100
++D F LP N + ++ HC++AKA + + E LKK NK+ KL+KK
Sbjct: 690 NRDHHFC----LPRYLTFNIYFGYLTSLFHCDQAKANELPHMSQEDLKKLNKDKKLVKKL 523
Query: 101 FKPYDTLLCSETLMKQLPKLCGNVLSKIGKFPISITEGESVVAKVKELQSTVRFQLKKVV 160
K YD L SE+L+K +P++ G L+K GKFP I+ E++V KV++++ST++FQ+KKV+
Sbjct: 522 AKKYDAFLASESLIKLIPRILGPGLAKAGKFPSPISHNEAMVGKVEDVRSTIKFQMKKVL 343
Query: 161 CLATAVATDALTEEQIRQNINMSLNFLVSLLKKGWQNLKTVHIKTTMSKSYRIF 214
CL+T V ++++ + NI +++NFLVSLLKK WQN++ +++K+TM K+ RIF
Sbjct: 342 CLSTCVGHVGMSQDDLYSNITLAINFLVSLLKKNWQNVRALYVKSTMGKAQRIF 181
>28140
Length = 574
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 MSKISSEFLKNTITQML--SDRKKREFTETVELQIGLRDYNPDKDKRFTGSIKLPNMPYP 58
MSK++ + L+ I +L S KKR+FTE+VELQI L++Y+P KDKRF G++KL + P P
Sbjct: 217 MSKLNRDLLREAIETILTQSTEKKRKFTESVELQISLKNYDPQKDKRFAGTVKLRHTPKP 396
Query: 59 NKKIAIIGTMRHCEEAKAAGIACIDTEGLKKFNKEPKLIKKWFKPYDTLLCSETLM 114
++ I+G HC++AKA + + E LKK NK+ KL+K+ + LL SE+L+
Sbjct: 397 KMRVCILGDQVHCDQAKANELPHMSQEDLKKLNKDKKLVKEAGQEVRCLLASESLI 564
>10829
Length = 1878
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Frame = -3
Query: 69 RHCEEA-KAAGIACIDT----EGLKKFNKEPKLIKKWFKPYDTLLCSETLMKQLPKLCGN 123
RH ++ K GI CI + LK K + K YD +++ LP G
Sbjct: 1552 RHFKQKLKEEGITCISQIIPLKALKLEYKPFEAKXKLSDSYDVFWADXRIIRLLPAYLGK 1373
Query: 124 VLSKIGKFPISI--------TEGESVVAKVKELQSTVRFQLKKVVCLATAVATDALTEEQ 175
+ PI + E E+ ++ + L S K +AT +TD ++ +
Sbjct: 1372 AFYGRKRHPIQVRMDSKDLREEFETAISNSRCLLSG-----KGSSGMATVGSTD-MSAAE 1211
Query: 176 IRQNINMSLNFLVSLLKKGWQNLKTVHIKTTMSKSYRIF 214
+ QNI ++ + + + G N++ +HIKT S + ++
Sbjct: 1210 LVQNITACMHQIAAAIPGGAVNIRNMHIKTEDSMAIPVY 1094
>24577
Length = 593
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 61 KIAIIGTMRHCEEAKAAGIACIDTEGLKKFNKE 93
++ I+G HC++AKA + + E LKK NK+
Sbjct: 492 RVCILGDQVHCDQAKANELPHMSQEDLKKLNKD 590
>15001
Length = 1292
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 96 LIKKWFKPYDTLLCSETLMKQLPKLCGNVLSKI 128
+IK+WF + +C + Q P LCG L ++
Sbjct: 1187 IIKQWFGLLSSEICYHCIS*QFPYLCGEKLRQV 1089
>05036
Length = 1101
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 177 RQNINMSLNFLVSLLKKGWQNLKTVHIKTTM 207
R +N SL FL L++ W +HIKTT+
Sbjct: 727 RYKVNGSLFFLYILIQIQWGGDAELHIKTTL 635
>00075
Length = 1106
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = -3
Query: 74 AKAAGIACIDTEGLKKFN-KEPKLIKKWFKPYDTLLCSETLMKQLPKLCGN----VLSKI 128
AK G + D + KK N K LI KPY LC ++ KQ GN + S
Sbjct: 1005 AKQYGCSQCDKKFTKKTNIKMHMLIHSGEKPYTCTLCQKSFTKQ-----GNLKVHLRSHS 841
Query: 129 GKFPISITEGESVVAKVKELQSTVRFQ 155
G P S +E +V L +R
Sbjct: 840 GNKPYSCSECLAVFYTSSSLTVHMRIH 760
>06399
Length = 814
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = -2
Query: 101 FKPYDTLLCSETLMKQLPKLCGNVLSKIGK---FPISITEGESVVAKVKELQSTVRFQLK 157
F LLC E K + + C N+ S + I I + +V + K L +T+ L
Sbjct: 387 FLXLSMLLCHEISPKAVRRFCTNMRSHRERRH*LKIFIGQSLTVXXRSKWLSTTL*PSLH 208
Query: 158 KVVCLATAVATDALTEEQIRQNINMS 183
++CLA RQ+IN+
Sbjct: 207 AILCLAGICLLKIKIGSVDRQSINIG 130
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00794540__134.m001332-
oxo_acid_dehydrogenases_acyltransferase
(462 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
21787 127 8e-30
32214 70 3e-12
07279 56 2e-08
>21787
Length = 473
Score = 127 bits (320), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Frame = +3
Query: 233 FQKGMQKSMTEANTIPHLYLKDEYDLTNLTVLREQIKKSQNQS---ITFMTFFIKAFSLA 289
QK M K+M+ A IP DE DLT L +R ++K Q ++M F+KA SLA
Sbjct: 15 IQKAMVKTMSAALQIPAFGYYDEIDLTQLVSVRGKLKAIAEQRGIRFSYMPVFLKAASLA 194
Query: 290 LKEYPILNSLYDVNKPFEYTLVQNHNISLAVDSPKGLVVPNIKNVQNLSILDIQKEIKRL 349
L ++P+LNS D K T +HNI +A+D+P GL+VPN+KNVQ+LS+++I E+ RL
Sbjct: 195 LHQFPVLNSSLD-EKCENVTYKASHNIGVAMDTPDGLLVPNVKNVQSLSVVEIASELMRL 371
Query: 350 VKEGEAGTLGPKDLFDGSICISNIGTIGGTYTGP 383
G G L DL G+ +SNIGTIGGTY P
Sbjct: 372 QDLGARGKLSTADLTGGTFSLSNIGTIGGTYARP 473
>32214
Length = 335
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%)
Frame = -3
Query: 24 FGTIKPFKLPDLGEKIKEATVKKLYVKEGDIVEEFQTIADVATDKLFTQIPSSYAGKIHK 83
+ I+PF L D+GE I+E VK+ YV EGD+V +F I +V +DK I S + G I K
Sbjct: 312 YKEIQPFNLSDIGEGIREVVVKEWYVAEGDVVHQFDPICEVQSDKANVTITSRFDGVIKK 133
Query: 84 VFHKEEDTCLVGDVFVEIEVD 104
+ ++ ED LVG V+IE +
Sbjct: 132 LHYELEDVALVGQPLVDIETE 70
>07279
Length = 844
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%)
Frame = +3
Query: 366 GSICISNIGTIGGTYTGPLIFAPQTTIVGLGRVMTLPRYINKSLDPKVEDLELAPRKIMN 425
G+ ISN G G + P+I PQ+ I+G+ + P + K+++ R +M
Sbjct: 42 GTFTISNGGVFGSMFGTPIINPPQSAILGMHGIFDRPVAVGKNVEI---------RPMMY 194
Query: 426 VSFGCDHRVVDGATVTKFSNKWKSYLEDPSTMLLHL 461
V+ DHR+VDG F K K+ +EDP +LL L
Sbjct: 195 VALTYDHRLVDGREAVTFLRKIKAAVEDPRVILLDL 302
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00118610__3812.m02472ATP_synthase_F1,
_gamma_subunit_family_protein
(299 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
23251 126 9e-30
09837 32 0.30
25602 31 0.76
00707 30 0.96
12034 28 4.1
14518 28 6.6
>23251
Length = 1080
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 147/274 (53%), Gaps = 5/274 (1%)
Frame = -1
Query: 27 KQLKIRMKAIGSIKKITXXXXXXXXXXXXXETSRLENGRNFAVGSVQKMLENESYVQKKK 86
K +++R+K++ +I+KIT L+ R++ G+ + E Q K
Sbjct: 1080 KDIRLRLKSVTNIQKITKSMKMVSAAKYARAERELKPARSYGAGA-KAFFEATDMEQDK- 907
Query: 87 STTAPKSTLLVPITSDKGLCGSVNSSIVREVKRLALNNRS---AFGLLPVGEKGSSGLSR 143
T P + ++V ++SD+GLCG ++S I RE++ + +N R L+ +G+K L R
Sbjct: 906 --TQP-NQMIVVLSSDRGLCGGIHSGICRELRNM-INERGPGIETKLVVLGDKAKGILQR 739
Query: 144 PFPD--LLKSSIVNIQNVNFPTAAAIAHQVSTQGAGYDQVTLIYNHFKNAISYVVKHQEL 201
F D L+ + + F A+ +A+ + +D + +N F++ +SY V L
Sbjct: 738 LFKDNFLMSFNEYGRKPPVFADASLVANAILDLDYKFDAAQMYFNTFRSVVSYRVTELPL 559
Query: 202 LPRAQFLNLFKYVTRHEAVEPELEYSKNYFFELYMASSVYNALLNSSASEQASRMNAMEN 261
Q K + +++++ ++ S N E +AS VY A+ + SEQ+SRM AM+
Sbjct: 558 FNAEQVAKSEK-INLYDSIDEDVLRSYN---EFALASLVYFAMKEGACSEQSSRMTAMDA 391
Query: 262 ASKNAGEILSKLTLDYNKARQAKITMELIEIISG 295
ASKNAGE++ KLTL +N+ RQA IT ELIEIISG
Sbjct: 390 ASKNAGEMIDKLTLTFNRTRQAVITKELIEIISG 289
>09837
Length = 3059
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 208 LNLFKYVTRHEAVEPELEYSK 228
LN+F Y+ RH +V P YSK
Sbjct: 671 LNIFXYIERHWSVRPHWHYSK 733
>25602
Length = 432
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 129 GLLPVGEKGSSGLSRPFPDLLKSSIVNIQNVNFPTA-AAIAHQVSTQGAGYDQVT 182
GLL E G S P PDL S NI+ +N A A +AH ++TQ A Y+ ++
Sbjct: 424 GLLVYTEHRFYGESHPLPDL---SNENIKYLNVKQALADVAHFITTQKATYNGLS 269
>00707
Length = 935
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 242 NALLNSSASEQASRMNAMENASKNAGEILSKLTLDYNKARQAKI 285
NA LN S + +E SK I++KLT+DYN A +
Sbjct: 271 NAFLNPSLYLPF*HLVFIEKMSKQTDSIITKLTVDYNSVICAPL 402
>12034
Length = 731
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 194 YVVKHQELLPRAQFLNLFKYVTRHEAVEPELEYSKNYF 231
Y+V +L FL +FK V +H +E E+E F
Sbjct: 249 YIVVQVDL**TVSFLRIFKIVIKHNVIEIEVEIMHTCF 136
>14518
Length = 598
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 182 TLIYNHFKNAISYVVKHQELLPRAQFL 208
T+IY H K IS V KH L+ FL
Sbjct: 481 TIIYKHIKLVISTVRKHSRLISSIWFL 401
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00992760__186.m00054ribosomal_protein_S10_containing_protein
(120 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
23939 124 1e-29
04459 122 3e-29
03949 27 1.8
>23939
Length = 430
Score = 124 bits (310), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 80/100 (80%)
Frame = +1
Query: 18 RVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTKTLVITVRKSPCGEGSKTW 77
R+RITLT +N+KS+EK ++++ AK +Q++VKGPVRMPTK L IT RK+PCGEGSKTW
Sbjct: 67 RIRITLTSRNVKSLEKVCADLIKGAK-DKQLKVKGPVRMPTKILXITTRKTPCGEGSKTW 243
Query: 78 DRFEMRIYKRIIDLTCNVPDVKTITNFRIDPGVEIELTMT 117
DR++MRI+KRIIDL VK IT+ I+PGVE+E+T+
Sbjct: 244 DRYQMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIA 363
>04459
Length = 662
Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 80/99 (80%)
Frame = +1
Query: 18 RVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTKTLVITVRKSPCGEGSKTW 77
R+RITLT +N+KS+EK ++++ AK +Q++VKGPVRMPTK L IT RK+PCGEGSKTW
Sbjct: 196 RIRITLTSRNVKSLEKVCADLIKGAKD-KQLKVKGPVRMPTKILRITTRKTPCGEGSKTW 372
Query: 78 DRFEMRIYKRIIDLTCNVPDVKTITNFRIDPGVEIELTM 116
DR++MRI+KRIIDL VK IT+ I+PGVE+E+T+
Sbjct: 373 DRYQMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTI 489
>03949
Length = 1080
Score = 26.9 bits (58), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 49 EVKGPVRMPTKTLVITVRKSPC 70
+V G R T+ V+TVR+SPC
Sbjct: 584 DVHGHCRNRTQLAVLTVRRSPC 519
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00193760__16.m00315EF_hand_family_protein
(910 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30885 128 1e-29
19912 40 0.003
14366 39 0.011
17484 33 0.55
02929 33 0.61
01558 30 5.4
18072 29 7.0
14706 29 9.8
>30885
Length = 1090
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 148/277 (53%), Gaps = 3/277 (1%)
Frame = -1
Query: 372 IQNKRVLIKPHFEDFDKTKQGYISKNQFLRILNQFSLFPSEEALNLILKR-YTDKGTLDE 430
+Q +R+L+KP F+DFD+ G+I++ QF + L + S L + R Y D G
Sbjct: 814 VQQRRILLKPVFQDFDRHNNGHITRVQFSQGLTMLEIPISTPELAALEARFYNDVG---- 647
Query: 431 VNYYEFCRDVDIYDEGVLVSKTYADSFKNY-QKPEKEFQPFIHNDIPNDIEDLLAKLRAK 489
VNY F ++++ V Y + Q K P +H + +D+E +L K++ K
Sbjct: 646 VNYLAFLKELE---PRAPVEFMYVKRLEEVRQTNAKGALPELHAE--SDLEKILMKIKTK 482
Query: 490 VKEQRLRISEFLRDFDKLRSGNITKEQLRLGLSMAKLPLSDAEFTLVIENFASTTKENNV 549
V ++R R+ +F+RD+DKLRSG + K R + +A+L L ++E ++ + + ST +
Sbjct: 481 VSKERFRVEDFMRDYDKLRSGRMLKTSFRRAVKLARLDLYESELAMIEDKYQSTVDPEYI 302
Query: 550 RWKDFCDQIDSVFTQKNLEKKS-ATLPVFNPSTEYKYGRRGLTEQERRIAEHMKARFRQF 608
+K FCD+I+S+FT K+LEK + F P E++ LT ++ + A+ ++
Sbjct: 301 DYKRFCDEIESIFTTKHLEKMPLEEVAPFKPPVEWELN--SLTPEKNEKFVNCMAKIKEK 128
Query: 609 CQATRIDIKQFFQDWDRNGRNKVTPKQFRQVLTTVNF 645
+ ++ + F+D+DR V+ QFR+VL+ +
Sbjct: 127 VRKHQMQLFPLFEDYDRVHNGSVSRLQFRRVLSELQL 17
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 136/279 (48%), Gaps = 8/279 (2%)
Frame = -1
Query: 597 IAEHMKARFRQFCQATRIDIKQFFQDWDRNGRNKVTPKQFRQVLTTVNFNISDPEFNAI- 655
+ E R R Q RI +K FQD+DR+ +T QF Q LT + IS PE A+
Sbjct: 850 LYEETMTRIRSRVQQRRILLKPVFQDFDRHNNGHITRVQFSQGLTMLEIPISTPELAALE 671
Query: 656 SRMYSSEDEHDVRYVDFIRDTK-------VYEQHLWSSNQTKDFGAHGLDTRKRPVDANV 708
+R Y ++ V Y+ F+++ + +Y + L QT GA L D
Sbjct: 670 ARFY---NDVGVNYLAFLKELEPRAPVEFMYVKRLEEVRQTNAKGA--LPELHAESDLEK 506
Query: 709 LLEEIKNIIKINRLRVGEYFADYDPLRKGVIPTNKFRGVISQMKIDLDEEQILKLENMYI 768
+L +IK + R RV ++ DYD LR G + FR + ++DL E ++ +E+ Y
Sbjct: 505 ILMKIKTKVSKERFRVEDFMRDYDKLRSGRMLKTSFRRAVKLARLDLYESELAMIEDKYQ 326
Query: 769 LQSDPTKLDYASFLEDVNIVFTKTGLEKDPIAKPVPFEKKNAIDPRDVLTPQEEEDLHVL 828
DP +DY F +++ +FT LEK P+ + PF+ + + LTP++ E
Sbjct: 325 STVDPEYIDYKRFCDEIESIFTTKHLEKMPLEEVAPFKPPVEWE-LNSLTPEKNEKFVNC 149
Query: 829 LLRLGEVISKHRIMFKTHFQDKDIAKSGKVSFTRFRSIL 867
+ ++ E + KH++ F+D D +G VS +FR +L
Sbjct: 148 MAKIKEKVRKHQMQLFPLFEDYDRVHNGSVSRLQFRRVL 32
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 1/282 (0%)
Frame = -1
Query: 128 FQDFDRTRCSHITVDQFSRVLTQLSI-LPNEQLFNLLIRRYIDNGNPKEVNYVKFCDDVD 186
FQDFDR HIT QFS+ LT L I + +L L R Y D G VNY+ F +++
Sbjct: 781 FQDFDRHNNGHITRVQFSQGLTMLEIPISTPELAALEARFYNDVG----VNYLAFLKELE 614
Query: 187 NVSEMLETVIKGIKPNEKVFDPNEDIVEDTKDLKLMSTLFTSKKLNFGNKQLNDVIVKIQ 246
+ P E ++ + V T + L L +++KI+
Sbjct: 613 PRA-----------PVEFMYVKRLEEVRQTNAKGALPELH-------AESDLEKILMKIK 488
Query: 247 AEVVMKRIRIREFFKDYDNLRKGVVSEQQFRRVLDVSNIKLSEQDINLLLSEFKVDNIPN 306
+V +R R+ +F +DYD LR G + + FRR + ++ + L E ++ ++ +++ P
Sbjct: 487 TKVSKERFRVEDFMRDYDKLRSGRMLKTSFRRAVKLARLDLYESELAMIEDKYQSTVDPE 308
Query: 307 GQVRYSDFCEVIDEIFTKKAIDKDPLATVTQFQPETTLPARRYYLNLTEEEKGQLRHLLN 366
+ Y FC+ I+ IFT K ++K PL V F+P P +LT E+ + + +
Sbjct: 307 -YIDYKRFCDEIESIFTTKHLEKMPLEEVAPFKP----PVEWELNSLTPEKNEKFVNCMA 143
Query: 367 LYHKEIQNKRVLIKPHFEDFDKTKQGYISKNQFLRILNQFSL 408
++++ ++ + P FED+D+ G +S+ QF R+L++ L
Sbjct: 142 KIKEKVRKHQMQLFPLFEDYDRVHNGSVSRLQFRRVLSELQL 17
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 43/172 (25%)
Frame = -1
Query: 25 ITVNTDIEKL---IKAEVFKKQIRIREFFYDFDRLRKGVVTEDKFRSALSMLGMHLYEKD 81
+ +D+EK+ IK +V K++ R+ +F D+D+LR G + + FR A+ + + LYE +
Sbjct: 532 LHAESDLEKILMKIKTKVSKERFRVEDFMRDYDKLRSGRMLKTSFRRAVKLARLDLYESE 353
Query: 82 ILSLINKYKSG--PDQVKYTDFCDQIDAQFFDYNLAKENLESTKSSSP------------ 127
+ + +KY+S P+ + Y FCD+I++ F +L K LE P
Sbjct: 352 LAMIEDKYQSTVDPEYIDYKRFCDEIESIFTTKHLEKMPLEEVAPFKPPVEWELNSLTPE 173
Query: 128 --------------------------FQDFDRTRCSHITVDQFSRVLTQLSI 153
F+D+DR ++ QF RVL++L +
Sbjct: 172 KNEKFVNCMAKIKEKVRKHQMQLFPLFEDYDRVHNGSVSRLQFRRVLSELQL 17
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 137/295 (46%), Gaps = 20/295 (6%)
Frame = -1
Query: 480 EDLLAKLRAKVKEQRLRISEFLRDFDKLRSGNITKEQLRLGLSMAKLPLSDAEFTLVIEN 539
E+ + ++R++V+++R+ + +DFD+ +G+IT+ Q GL+M ++P+S E +
Sbjct: 844 EETMTRIRSRVQQRRILLKPVFQDFDRHNNGHITRVQFSQGLTMLEIPISTPELAALEAR 665
Query: 540 FASTTKENNVRW-KDFCDQIDSVFTQ-KNLEKKSAT-----LPVFNPSTEYKYGRRGLTE 592
F + N + + K+ + F K LE+ T LP + ++ + + L +
Sbjct: 664 FYNDVGVNYLAFLKELEPRAPVEFMYVKRLEEVRQTNAKGALPELHAESDLE---KILMK 494
Query: 593 QERRIAEHMKARFRQFCQATRIDIKQFFQDWDRNGRNKVTPKQFRQVLTTVNFNISDPEF 652
+ +++ K RFR ++ F +D+D+ ++ FR+ + ++ + E
Sbjct: 493 IKTKVS---KERFR---------VEDFMRDYDKLRSGRMLKTSFRRAVKLARLDLYESEL 350
Query: 653 NAISRMYSSEDEHDVRYVDFIRDTKVYEQHLWSSNQTKDFGAHGLDTRKRPVDANV---- 708
I Y S D Y+D+ R E ++++ + + K PV+ +
Sbjct: 349 AMIEDKYQSTV--DPEYIDYKRFCDEIES-IFTTKHLEKMPLEEVAPFKPPVEWELNSLT 179
Query: 709 ---------LLEEIKNIIKINRLRVGEYFADYDPLRKGVIPTNKFRGVISQMKID 754
+ +IK ++ +++++ F DYD + G + +FR V+S+++++
Sbjct: 178 PEKNEKFVNCMAKIKEKVRKHQMQLFPLFEDYDRVHNGSVSRLQFRRVLSELQLE 14
>19912
Length = 865
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +2
Query: 483 LAKLRAKVKEQRLRISEFLRDFDKLRSGNITKEQLRLGLSMAKLPLSDAEFTLVIE 538
+ KL A + LR+ +F FDK + +IT++Q R GL+ A +PL+ E +++
Sbjct: 632 MVKLMAYIDSNNLRLVDFFNKFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLD 799
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%)
Frame = +2
Query: 242 IVKIQAEVVMKRIRIREFFKDYDNLRKGVVSEQQFRRVLDVSNIKLSEQDINLLLSEFKV 301
+VK+ A + +R+ +FF +D ++ QFR+ L ++I L+ +++ LL E
Sbjct: 632 MVKLMAYIDSNNLRLVDFFNKFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLDELDR 811
Query: 302 DNIPNGQVRYSDF 314
D +G++ YS+
Sbjct: 812 DG--DGEINYSEL 844
>14366
Length = 499
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Frame = -3
Query: 256 IREFFKDYDNLRKGVVSEQQFRRVLDVSNIKLSEQDINLLLSEFKVDNIPNGQVRYSDFC 315
+RE F+ +D G+++ + R VL KLS+++++ ++ E + +GQV Y+DF
Sbjct: 245 LREAFRIFDKEGNGMINAAELRHVLTHLGEKLSDEEVDEMIREADISG--DGQVSYNDFV 72
Query: 316 EVIDEIFTKK 325
+V++ KK
Sbjct: 71 KVMENGL*KK 42
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%)
Frame = -3
Query: 586 GRRGLTEQERRIAEHMKARFRQFCQATRIDIKQFFQDWDRNGRNKVTPKQFRQVLTTVNF 645
G+R LT QE IA K +F T ++++ F+ +D+ G + + R VLT +
Sbjct: 323 GKRTLTLQEV-IAIVTK---YEFAPETSDNLREAFRIFDKEGNGMINAAELRHVLTHLGE 156
Query: 646 NISDPEFNAISRMYSSEDEHDVRYVDFIRDTKVYEQHL 683
+SD E + + R + V Y DF+ KV E L
Sbjct: 155 KLSDEEVDEMIREADISGDGQVSYNDFV---KVMENGL 51
>17484
Length = 471
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 41 KKQIRIREFFYDFDRLRKGVVTEDKFRSALSMLGMHLYEKDILSLINKY-KSGPDQVKYT 99
+K +R+ F FD+ GV++ + R A++ +G L + D+ S+I K G V Y
Sbjct: 280 EKDKEMRDAFRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRDVDKDGDGFVNYE 101
Query: 100 DFCDQIDAQ 108
+F I Q
Sbjct: 100 EFTKFIAGQ 74
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -3
Query: 256 IREFFKDYDNLRKGVVSEQQFRRVLDVSNIKLSEQDINLLLSEFKVDNIPNGQVRYSDFC 315
+R+ F+ +D GV+S + R+ + KLS+ D+ ++ + VD +G V Y +F
Sbjct: 265 MRDAFRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRD--VDKDGDGFVNYEEFT 92
Query: 316 EVI 318
+ I
Sbjct: 91 KFI 83
>02929
Length = 1353
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%)
Frame = +2
Query: 599 EHMKARFRQFCQATRIDIKQFFQDWDRNGRNKVTPKQFRQVLTTVNFNISDPEFNAISRM 658
E + ++ ++ QA + + FF+ D++G +T ++F + F + E NA+ +
Sbjct: 131 ESWRGKYLKWIQAKKFRVTDFFRRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDI 310
Query: 659 YSSEDEHDVRYVDFI 673
+ E + Y DF+
Sbjct: 311 FDREKRGLIEYKDFV 355
>01558
Length = 2767
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 303 NIPNGQVRYSDFCEVIDEIFTKKAIDKDP 331
N P+ V S+ V+D I T KA+D DP
Sbjct: 707 NSPSADVIVSEAISVLDTIVTLKAVDSDP 793
>18072
Length = 450
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 70 LSMLGMHLYEKDILSLINKYKSGPDQVKYTDFCDQIDAQFFDYNLAKENLESTKSSSPFQ 129
+SM +++Y+K + ++KY D +D+ Q+ + Y ++K LE S+SPFQ
Sbjct: 64 ISMKNLYIYKKYLKCTMHKYCPCYDTTHKSDWSIQLAEEDIIYPISK--LEEIYSASPFQ 237
>14706
Length = 1355
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Frame = +2
Query: 340 PETTLPARRYYLNLTEEEKGQLRHL----------LNLYHKEIQN 374
P L +RY +L EE + Q RHL LNLY EI+N
Sbjct: 443 PPPGLSQQRYGHSLLEETRAQKRHLEDNIAQLNEQLNLYEMEIEN 577
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00444870__3704.m00077EF_hand_family_protein
(172 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
22063 99 4e-29
14945 98 7e-29
14594 80 4e-16
06641 60 6e-10
20251 51 3e-07
38338 48 2e-06
05237 44 5e-05
14366 41 2e-04
26610 41 3e-04
18171 39 0.001
18677 39 0.001
01019 33 0.054
01491 32 0.11
08108 32 0.15
13457 26 9.9
>22063
Length = 688
Score = 99.0 bits (245), Expect(2) = 4e-29, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Frame = +3
Query: 2 NSKKTVAPQGKNFGVANKKQPQQRPGLTEDEIEEIREAFNLFDTEGSGKIDPRELKAAMQ 61
N KKT G +K+ + LTE++ +EIREAF+LFD +GSG ID +ELK AM+
Sbjct: 93 NFKKTTLAGG------GRKKTGPKCELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMR 254
Query: 62 SLGFENKNPTIYGMIADLESQGT-EIDFEDFLDAITSKLGDKETRDGINKIFELFDDDQT 120
+LGFE K I MIA+++ +GT IDF DFL +T K+ +K+ ++ I K F LFDDD+T
Sbjct: 255 ALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDET 434
Score = 45.4 bits (106), Expect(2) = 4e-29, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 123 ITLKNLMRVAKELGETMTQEELAEMLERAASNSR-EITPEDFYNIMVKKTF 172
I+ +NL RVAKELGE +T EEL EM++ A + EI E+F IM K +
Sbjct: 442 ISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMKKTSL 594
>14945
Length = 1337
Score = 98.2 bits (243), Expect(2) = 7e-29, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 1/128 (0%)
Frame = +1
Query: 2 NSKKTVAPQGKNFGVANKKQPQQRPGLTEDEIEEIREAFNLFDTEGSGKIDPRELKAAMQ 61
N KKT G +K+ + LTE++ +EIREAF+LFD +GSG ID +ELK AM+
Sbjct: 34 NFKKTSLAGG------GRKKTGPKCELTEEQKQEIREAFDLFDADGSGTIDAKELKVAMR 195
Query: 62 SLGFENKNPTIYGMIADLESQGT-EIDFEDFLDAITSKLGDKETRDGINKIFELFDDDQT 120
+LGFE K I MIA+++ +GT IDF DFL +T K+ +K+ ++ I K F LFDDD+T
Sbjct: 196 ALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDET 375
Query: 121 KSITLKNL 128
L L
Sbjct: 376 GKNLLPQL 399
Score = 45.4 bits (106), Expect(2) = 7e-29, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +2
Query: 123 ITLKNLMRVAKELGETMTQEELAEMLERAASNSR-EITPEDFYNIMVKKTF 172
I+ +NL RVAKELGE +T EEL EM++ A + EI E+F IM K +
Sbjct: 383 ISFRNLKRVAKELGENLTDEELQEMIDEADRDGDGEINQEEFLRIMKKTSL 535
>14594
Length = 1014
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
Frame = +3
Query: 28 LTEDEIEEIREAFNLFDTEGSGKIDPRELKAAMQSLGFENKNPT---IYGMIADLESQGT 84
LT++++ E +EAF+LFD +G G I EL M+SLG +NPT + MI ++++ G
Sbjct: 423 LTDEQVAEFKEAFSLFDKDGDGTITTSELGTVMRSLG---QNPTENELQDMINEVDADGN 593
Query: 85 -EIDFEDFLDAITSKLGDKETRDGINKIFELFDDDQTKSITLKNLMRVAKELGETMTQEE 143
IDFE+FL + K+ D + + + + F +FD D I+ L V LGE +T EE
Sbjct: 594 GTIDFEEFLHMMARKMKDTDCEEELREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 773
Query: 144 LAEMLERA-ASNSREITPEDFYNIMVKK 170
+ EM++ A + E+F +M K
Sbjct: 774 VDEMIKEADLDGDGMVNYEEFVTMMTAK 857
>06641
Length = 726
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 7/168 (4%)
Frame = +1
Query: 7 VAPQGKNFGVANKKQPQQRPGLTEDEIEEIREAFNLFDTEGSGKIDPRELKAAMQSLGFE 66
VA Q N ++ + + D ++I +AF++FD E + +D RE+ ++SLG
Sbjct: 112 VATQVNNMADTSEAKENSTDSMIADTQKKITDAFDIFDHEANKTVDVREVGTIIRSLGCC 291
Query: 67 NKNPTIYGMIADLESQGTE--IDFEDFLDAITSKLGDKETR----DGINKIFELFDDDQT 120
++ M+A++E + I FE FL +T L ++ + D I K F++ D +
Sbjct: 292 PSEAELHDMLAEIEEEEPTGYIRFEKFLPMMTKVLMERRYKAVPEDQIVKAFQVLDVEGR 471
Query: 121 KSITLKNLMRVAKELGETMTQEELAEMLERAASNSREITP-EDFYNIM 167
+ + L + E GE T EEL EM+ +A + P +D+ ++M
Sbjct: 472 GYLLQEELSKYMTEEGEPFTSEELEEMMSQALDPEKGYIPYKDYASLM 615
>20251
Length = 2203
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%)
Frame = +3
Query: 30 EDEIEEIREAFNLFDTEGSGKIDPRELKAAMQSLGFENKNPTIYGMIADLESQGTEIDFE 89
+ +I+E +EAFN+ D G ID +L + SLG KNPT + + I+F
Sbjct: 147 QSQIQEFKEAFNMIDQNRDGFIDKEDLGDMLASLG---KNPTEGQLDEMMNXAPGPINFT 317
Query: 90 DFLDAITSKLGDKETRDGINKIFELFDDDQTKSITLKNLMRVAKELGETMTQEELAEMLE 149
FL KL + D I F FD+D I L + +G+ T +E+ EM
Sbjct: 318 MFLTMFGDKLNGTDPEDVIKNAFACFDEDGKGVIQEDRLRELLTTMGDRFTDDEVDEMFR 497
Query: 150 RA 151
A
Sbjct: 498 DA 503
>38338
Length = 463
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Frame = -2
Query: 28 LTEDEIEEIREAFNLFDTEGSGKIDPRELKAAMQSLGFENKNPT---IYGMIADLESQGT 84
LTE++I E +EAF+LFD +G G I +EL M+SLG +NPT + MI ++++ G
Sbjct: 186 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG---QNPTEAELQDMINEVDADGN 16
Query: 85 -EIDF 88
IDF
Sbjct: 15 GTIDF 1
>05237
Length = 472
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = +3
Query: 34 EEIREAFNLFDTEGSGKIDPRELKAAMQSLGFENKNPTIYGMI--ADLESQGTEIDFEDF 91
+E+REAF +FD +G+G I EL+ M +LG + + + MI AD++ G ++++E+F
Sbjct: 27 DELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDG-QVNYEEF 203
Query: 92 LDAITSK 98
+ +T+K
Sbjct: 204VKMMTTK 224
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 103 ETRDGINKIFELFDDDQTKSITLKNLMRVAKELGETMTQEELAEMLERA-ASNSREITPE 161
+T D + + F +FD D I+ L V LGE +T EE+ EM+ A ++ E
Sbjct: 18 DTDDELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 197
Query: 162 DFYNIMVKK 170
+F +M K
Sbjct: 198 EFVKMMTTK 224
>14366
Length = 499
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Frame = -3
Query: 34 EEIREAFNLFDTEGSGKIDPRELKAAMQSLGFENKNPTIYGMIADLESQGTE-IDFEDFL 92
EE++EAF + + I +L ++S+G + + + E++G + ++ +
Sbjct: 467 EELQEAF-IMNCSPDNTIALNKLGIVVRSIGRAPTESQLKTLTMEFENRGKRTLTLQEVI 291
Query: 93 DAITSKLGDKETRDGINKIFELFDDDQTKSITLKNLMRVAKELGETMTQEELAEMLERA- 151
+T ET D + + F +FD + I L V LGE ++ EE+ EM+ A
Sbjct: 290 AIVTKYEFAPETSDNLREAFRIFDKEGNGMINAAELRHVLTHLGEKLSDEEVDEMIREAD 111
Query: 152 ASNSREITPEDFYNIM 167
S +++ DF +M
Sbjct: 110 ISGDGQVSYNDFVKVM 63
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = -3
Query: 36 IREAFNLFDTEGSGKIDPRELKAAMQSLGFENKNPTIYGMI--ADLESQGTEIDFEDFLD 93
+REAF +FD EG+G I+ EL+ + LG + + + MI AD+ G ++ + DF+
Sbjct: 245 LREAFRIFDKEGNGMINAAELRHVLTHLGEKLSDEEVDEMIREADISGDG-QVSYNDFVK 69
Query: 94 AITSKL 99
+ + L
Sbjct: 68 VMENGL 51
>26610
Length = 455
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Frame = +3
Query: 36 IREAFNLFDTEGSGKIDPRELKAAMQSLGFENKNPTIYGMI--ADLESQGTEIDFEDFLD 93
+ EAF LFDT+ GKI E+ A++SLG + + ++ A +E G ++D F
Sbjct: 48 VSEAFELFDTDNDGKIAASEVGTAIRSLGHVVTDSDLRRLLSKAGIEPHG-KVDMNRFRQ 224
Query: 94 AITSKLGDKETRDGINKIFELFDDDQTKSITLKNLMRVAKELGETMTQEELAEMLE 149
+ G T+ +++ F D + + + L + +G+ +T EE +LE
Sbjct: 225 LVQPLQGVNYTKQ-LDEAFNTIDKEGSGFVMATELRHLLTHMGDRITDEEFNALLE 389
>18171
Length = 1131
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 85 EIDFEDFLDAITSKLGDK---ETRDGINKIFELFDDDQTKSITLKNLMRVAKELGETMTQ 141
++DF DFL + +G K E D + + L D DQT I+ L V LG+ +T
Sbjct: 93 KVDFPDFLTLMARTVGSKDPQEEDDAMLEALTLLDKDQTGVISTALLRHVLTTLGDQLTS 272
Query: 142 EELAEMLERA 151
EE+ E+++ A
Sbjct: 273 EEVEELIKEA 302
>18677
Length = 754
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +2
Query: 32 EIEEIREAFNLFDTEGSGKIDPRELKAAMQSLGFENKNPTIYGMIADLESQGTEIDFEDF 91
EI+ RE F FD SG +D EL LGF P + ++ + +I EDF
Sbjct: 500 EIKAYREVFLQFDKNRSGLVDTYELGNMFSKLGFPVTRPVLTSIVRRYGDRRNQISLEDF 679
Query: 92 LDAI 95
+ I
Sbjct: 680 VVVI 691
>01019
Length = 1705
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 42 LFDTEGSGKIDPRELKAAMQSLGFENKNPTIYGMI--ADLESQGTEIDFEDFLDAITSK 98
+FD +G+G I EL+ M +LG + + + MI AD++ G ++++E+F+ +TSK
Sbjct: 43 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG-QVNYEEFVTMMTSK 216
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 107 GINKIFEL--FDDDQTKSITLKNLMRVAKELGETMTQEELAEMLERA-ASNSREITPEDF 163
GIN + L FD D I+ L V LGE +T EE+ EM+ A ++ E+F
Sbjct: 16 GINAEWPLLVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 195
Query: 164 YNIMVKK 170
+M K
Sbjct: 196 VTMMTSK 216
>01491
Length = 1707
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 28 LTEDEIEEIREAFNLFDTEGSGKIDPRELKAAMQSLGFE 66
+TE + + F+LFD +G+G + +EL +SLG +
Sbjct: 110 ITEKMYNDASQTFHLFDKKGNGTVSTKELANVFKSLGLQ 226
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 39 AFNLFDTEGSGKIDPRELKAAMQSLGFENKNPTIYGMIADLESQGT-EIDFEDF 91
AF + D G I +L+ ++SLG + I MI + ++ G+ +D+E+F
Sbjct: 361 AFRVLDKGNKGVIPVEDLRWLLKSLGDDLTEDEIEDMIVETDTDGSGTVDYEEF 522
>08108
Length = 818
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 35 EIREAFNLFDTEGSGKIDPRELKAAMQSLG 64
E + AF +FDT+GSG I EL A+++ G
Sbjct: 128 ECQTAFAVFDTDGSGSISAGELGEALRAQG 217
>13457
Length = 4857
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -1
Query: 1 MNSKKTVAPQGKNFGVANKKQPQQRPG-LTEDE-IEEIREAFNLFDTEGSGKIDPRELKA 58
+ S T P N V +QP +RPG T DE I + EA TEG+ + R
Sbjct: 2334 LKSTSTGPPTRANVWVREFRQPGERPGSHTSDERIPDWYEA-----TEGATQAPQRR*PP 2170
Query: 59 AMQSLGFENKNPTIYGMI 76
+ +LG PT+ G I
Sbjct: 2169 LLGALG----RPTLLGEI 2128
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00194650__16.m00405threonyl-tRNA_synthetase_family_protein
(882 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07414 122 9e-28
19083 106 4e-23
>07414
Length = 787
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = -2
Query: 674 RPVILHRAVIGSFERFLAILCEQTAGKWPFWLSPKQLIICPITAKVNDFAQDVADRLKVE 733
RPVI+HRAV+GS ER +AILCE GKWPFWLSP+Q I+ P+ +++A V ++
Sbjct: 546 RPVIVHRAVLGSVERMMAILCENFGGKWPFWLSPRQSIVVPVAPPFDEYADKVKKQIHDA 367
Query: 734 GYKVAVDL-SESTIQKKVRNAQLEQYNYIAVVGEEEKRGGYVDLRARDTTKDQERMGKFT 792
G+ DL + +T+ KK+RNAQL QYN+I VVGE+E G V++R RD E +
Sbjct: 366 GFLCDHDLDTGTTMNKKIRNAQLAQYNFIFVVGEKELANGTVNVRTRDNKVHGEHSVEHV 187
Query: 793 IHQLFALFQS 802
I Q F+ F++
Sbjct: 186 I-QRFSHFKT 160
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 47/72 (65%)
Frame = -2
Query: 522 NYIGEIEMWDQAENALKKGLEAFGKPWAIKAKDGAFYGPKIDIQLYDAFDRGHQCGTIQL 581
++GEI +WD AE L + LE G + + DGAFYGPKIDI + DA R HQC TIQL
Sbjct: 786 TFLGEISVWDSAEQQLSEVLEESGLKFELNPGDGAFYGPKIDITIKDALRRSHQCATIQL 607
Query: 582 DFNLPIRFNLQY 593
DF LP RF L Y
Sbjct: 606 DFQLPERFGLTY 571
>19083
Length = 459
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 58/87 (66%)
Frame = -3
Query: 520 PDNYIGEIEMWDQAENALKKGLEAFGKPWAIKAKDGAFYGPKIDIQLYDAFDRGHQCGTI 579
PD Y+GE+E W+ AE AL + L FG PW DGAFYGPKIDI + DA R QC TI
Sbjct: 454 PDKYLGELEQWNAAEKALAESLNEFGMPWKENPGDGAFYGPKIDITIMDALKRPFQCATI 275
Query: 580 QLDFNLPIRFNLQYRAPENKDDIEKQR 606
QLDF LPIRFNL Y A DD EK+R
Sbjct: 274 QLDFQLPIRFNLNYIA----DDGEKKR 206
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%)
Frame = -3
Query: 673 QRPVILHRAVIGSFERFLAILCEQTAGKWPFWLSPKQLIICPITAKVNDFAQDVADRLKV 732
+RPVI+HRA++GS ER +AIL E AGKWPFWLSP+Q+++ P+ +++A+ V D+L
Sbjct: 211 KRPVIIHRAILGSVERMIAILTENYAGKWPFWLSPRQVMVVPVGPAYDEYAKSVRDQLHA 32
Query: 733 EGY 735
G+
Sbjct: 31 AGF 23
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00355270__3836.m02318fumarylacetoacetate_hydrolase_family_pr
otein
(233 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
31401 118 2e-27
06673 109 1e-24
12784 29 1.9
>31401
Length = 647
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 75/115 (65%)
Frame = +2
Query: 100 YFLALDLTDRNLQAAAKKAGFPWDLSKGQDKFLPISSFIPKEKVQDPYNLTLHLRINGKT 159
Y LALD+T R+ Q AKK G PW L+KG D P+S FIP +K+QDP N+ L L++NG
Sbjct: 2 YILALDMTARDFQDEAKKKGQPWALAKGFDTSCPVSGFIPFDKLQDPQNVALWLKVNGTM 181
Query: 160 IQKDNTGIMHFKIKDQIEYASKFMTLYPGDLFLTGTPDGVGPIKHGDHVVAELLE 214
Q+ NT M F I+ I + S++ TL PGD+ LTGTP GVGPI GD + L +
Sbjct: 182 KQEGNTKDMIFNIRTLIAFISQYFTLXPGDVILTGTPSGVGPIVPGDTIQCGLAD 346
>06673
Length = 4705
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 113/201 (56%), Gaps = 6/201 (2%)
Frame = -2
Query: 6 TKVLNPKLN--KILAIGKNYVKHVKEMGGSEVPKEPVIFQKPHSSVL-PN--IQKGQKVQ 60
K+L P N KIL +G NY H +E G + VP EPVIF K +S+++ PN + Q Q
Sbjct: 4548 VKILAPITNPEKILCVGMNYKDHCEEQG-APVPDEPVIFSKFNSAIIGPNDDLVYPQNTQ 4372
Query: 61 FFTKNEVHHEIELGFMMSKEASHKSFQKSGENWQDYVGGYFLALDLTDRNLQAAAKKAGF 120
++ E+EL ++ K A + K+ DYV GY +A D++ R+ Q K G
Sbjct: 4371 -----QLDWEVELVIVIGKTARNVPVDKA----MDYVFGYTVAHDVSARDWQF---KNGG 4228
Query: 121 PWDLSKGQDKFLPIS-SFIPKEKVQDPYNLTLHLRINGKTIQKDNTGIMHFKIKDQIEYA 179
+ L K D F P+ + + KE ++DP++L L+ R+N Q +T + FK + + +
Sbjct: 4227 QFLLGKTIDGFCPLGPAIVMKEDLKDPHDLKLYTRVNDVVKQDSSTNQLVFKTPELVAFI 4048
Query: 180 SKFMTLYPGDLFLTGTPDGVG 200
S+FMT+ PGD+ LTGTP GVG
Sbjct: 4047 SRFMTMKPGDIILTGTPPGVG 3985
>12784
Length = 2199
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 128 QDKFLPISSFIPKEKVQDPYNLT 150
+DKF PIS+ IP+ + PY +T
Sbjct: 684 EDKFDPISTCIPRSNICTPYLMT 752
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00317200__3687.m00124Adenylate_kinase_family_protein
(1004 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06512 120 3e-27
01182 117 2e-26
16252 81 3e-15
01642 37 0.059
07243 34 0.35
02441 32 1.7
>06512
Length = 2288
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 5/177 (2%)
Frame = +1
Query: 16 IVFVSGGPGSGKGTQCERLVRDY-HFEHISVGDLVRDEIKRGTPEGQKF---KDASAKGE 71
I+F +GGP SGKGTQC+RL+ Y + H+S+GD++R +I K+ D KGE
Sbjct: 1120 IIFFAGGPASGKGTQCKRLLSRYTNAAHLSMGDIIRAQIATQGSADDKWDMMTDLMRKGE 1299
Query: 72 LVPDHLVVALIIKAIKSRKSFRF-LIDGFPRNVEQAKMFEMKFKEIDYILNFEVPDEILT 130
L P+ + V L++ ++KS+ F L++G+PRN++Q + F K + + + ++IL
Sbjct: 1300 LAPEEVTVDLLMSSLKSQPDAHFYLVEGYPRNLQQLEDFNQKIGGQSFTILLDCEEDILH 1479
Query: 131 SRLMGRGASSGRADDNPEAIATRLRVFHNETQPVLDFYNHFGKVKTMDGSKSVDEVY 187
RL RG +S R DDN AI +L F N T P+L ++ GK+ + G + DE++
Sbjct: 1480 YRLTMRGKTSERIDDNLVAIGKKLTYFKNNTLPILKTFDDSGKLVVVGGDRDEDEIF 1650
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 114/208 (54%), Gaps = 9/208 (4%)
Frame = +1
Query: 16 IVFVSGGPGSGKGTQCERLVRDY-HFEHISVGDLVRDEIKRGTPEGQKFKDAS---AKGE 71
I+F++GGPGSGK TQ E L++ Y + + VGDL+R EI ++K S + GE
Sbjct: 331 IIFLTGGPGSGKSTQAELLLQKYPKWVTVPVGDLLRQEINDNGSGNARWKMVSELMSDGE 510
Query: 72 LVPDHLVVALIIKAIKSR-KSFRFLIDGFPRNVEQAKMFEMKFKEIDYILNFEVPDEILT 130
+VP+ +V L++ +KS K+ F+I GFPR++EQA+ +E +D + + +E L+
Sbjct: 511 MVPEDVVDTLLLDKLKSAPKAEGFVIQGFPRDMEQAEQYEKLVGRVDAVFLIDCEEETLS 690
Query: 131 SRLMGRGASSGRADDNPEAIATRLRVFHNETQPVLDFYNHFGKVKTMDGSKSVDEVYKQV 190
+L+ R S+ R D+N +A R+ F + T PVL ++ K+ ++G V +++
Sbjct: 691 QQLLDRAKSTKRIDNNVNTVAKRIHAFRDNTLPVLKHFDDMEKLFVLNGESPAKAVAEEL 870
Query: 191 QEQIKPNLI----FMYGPPCVGKTETAR 214
+ +I ++ PP K E R
Sbjct: 871 AIIFETVVINKEKYIPAPPKTPKPERVR 954
>01182
Length = 2762
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 103/182 (56%), Gaps = 7/182 (3%)
Frame = -3
Query: 16 IVFVSGGPGSGKGTQCERLVRDYHFEHISVGDLVRDEIKRGTPEGQKFKDAS----AKGE 71
+VFV GGPG+GKGTQC ++ + ++H+S GDL+R E + E KFKD G
Sbjct: 2292 VVFVLGGPGAGKGTQCTKIEETFGYKHLSAGDLLRAERAK---EESKFKDEIETHIKNGS 2122
Query: 72 LVPDHLVVALIIKAIKSRKSFRFLIDGFPRNVEQAKMFEMKFKEIDYI---LNFEVPDEI 128
+VP + +L+ +A++ + +FLIDGFPRN + + + L F P+++
Sbjct: 2121 IVPVEITCSLLKQAMEESRKDKFLIDGFPRNKNNLDGWNKVMDSVAVVRKVLFFNCPEDV 1942
Query: 129 LTSRLMGRGASSGRADDNPEAIATRLRVFHNETQPVLDFYNHFGKVKTMDGSKSVDEVYK 188
R + RG +SGRADDN E++ R++ + T P+++ Y V ++ +++ ++V+
Sbjct: 1941 CIDRCLDRGKNSGRADDNRESLEKRIKTYTESTMPIIEHYKKQSLVAEINANQTEEQVFN 1762
Query: 189 QV 190
V
Sbjct: 1761 DV 1756
>16252
Length = 789
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 32/177 (18%)
Frame = +2
Query: 46 GDLVRDEIKRGTPEGQKFKDASAKGELVPDHLVVALIIKAI-KSRKSFRFLIDGFPRNVE 104
GD++R EI G+ G + K +G+LV D LVV +I + K FL+DGFPR V
Sbjct: 2 GDMLRAEISSGSKLGSELKKVMDEGKLVSDDLVVNMIDSNLDKPECKNGFLLDGFPRTVV 181
Query: 105 QAK----MFEMKFKEIDYILNFEVPDEILTSRLMGR--GASSGRA--------------- 143
QA+ + + + +D ++ F + D +L R+ GR +SGR+
Sbjct: 182 QAQKLDSLLDKRKTHLDAVIEFAIDDNLLVRRITGRLIHQASGRSYHEEFAPPKVPMRDD 361
Query: 144 ----------DDNPEAIATRLRVFHNETQPVLDFYNHFGKVKTMDGSKSVDEVYKQV 190
DDN EA+ RL +H +T+P++D+Y G +D +K +V+ +
Sbjct: 362 ITGELLMKRSDDNAEALKKRLESYHKQTKPLVDYYGLRGLHFKVDAAKQASDVFSTI 532
>01642
Length = 1406
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = -1
Query: 185 EVYKQVQEQIKPNLIFMYGPPCVGKTETARRLSEKIKYHFVNLEAFDKQHQVKSETDRIN 244
E+YKQ+ P + MYGPP GKT A+ ++ F+ + + + E R+
Sbjct: 923 ELYKQIGID-PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMV 747
Query: 245 KLINYL--QDAPHNNFI--IDSFFNSKNDAE 271
+ + L ++AP FI ID+ + DA+
Sbjct: 746 RDVFRLAKENAPAIIFIDEIDAIATKRFDAQ 654
>07243
Length = 1112
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 196 PNLIFMYGPPCVGKTETARRLSEKIKYHFVNLEAFDKQHQVKSETDR-INKLINYLQDAP 254
P +YGPP GKT AR ++ ++ +F+ + + + E+ R I ++ NY +D
Sbjct: 307 PKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD-- 480
Query: 255 HNNFII 260
H II
Sbjct: 481 HQPCII 498
>02441
Length = 1170
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 30 QCERLVRDYHFEHISVGDLVRDEIKRGTPEGQKFKDASAKGELV 73
QC+ +V++ EHI+V DLV EI TP+G+ S K EL+
Sbjct: 27 QCKEIVQNKGLEHITVDDLVA-EI---TPKGRALVPDSVKKELL 146
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00266390__3690.m00020hypothetical_protein
(144 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12838 116 4e-27
09197 113 3e-26
02448 27 3.5
>12838
Length = 912
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 87/138 (63%), Gaps = 8/138 (5%)
Frame = +1
Query: 1 MADN--------KKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKR 52
MAD+ +++ +K+TFRG L++L ++S ++L LF + RRR R
Sbjct: 427 MADDQELAEKKKRRTFRKYTFRGVDLDQLLDMSS---------EQLMELFHCRARRRFAR 579
Query: 53 GISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEV 112
G+ K + ++R++K++ EKP VKTH R MIV+PE++G IVGVYNGK F VE+
Sbjct: 580 GLKRKPMTLIKRLRKAKKEAGPLEKPEVVKTHLRDMIVVPEMIGSIVGVYNGKTFNQVEI 759
Query: 113 KFDMIGKYLAEFAMTYKP 130
K +MIG YL EF++TYKP
Sbjct: 760 KPEMIGHYLGEFSITYKP 813
>09197
Length = 534
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 82/126 (65%)
Frame = +3
Query: 5 KKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNK 64
+++ +K+T+RG L+ L ++S ++L +F + RRR RG+ K + +
Sbjct: 60 RRTFRKYTYRGVDLDMLLDMSS---------EQLMEMFPCRARRRFSRGLKRKPMTLIKR 212
Query: 65 VRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEF 124
+R++K++ EKP VKTH R MIV+PE++G IVGVYNGK F VEVK +MIG YL EF
Sbjct: 213 LRKAKKEAGPLEKPEVVKTHLRDMIVVPEMIGSIVGVYNGKTFNQVEVKPEMIGHYLGEF 392
Query: 125 AMTYKP 130
++TYKP
Sbjct: 393 SITYKP 410
>02448
Length = 1302
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 70 EKCPAGEKPVPVKTHYRSMIV 90
KCP+GEK V + YRS+IV
Sbjct: 306 NKCPSGEKTV-IALSYRSLIV 247
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00780960__3738.m00054hypothetical_protein
(128 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04999 114 9e-27
02707 114 1e-26
25765 85 8e-18
30799 53 4e-08
29075 37 0.002
04510 30 0.26
19486 26 4.2
24279 26 5.7
12413 25 6.7
18735 25 7.6
03910 25 8.4
>04999
Length = 1074
Score = 114 bits (286), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 77/100 (77%)
Frame = +3
Query: 13 IASFGRGLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRM 72
I + + +K G+VV+LL GRFAG+KA+IVK+ +DGT+D+ +GH LVAG++R P+KVT+RM
Sbjct: 621 IFTMPKFMKSGKVVLLLHGRFAGRKAIIVKNHDDGTQDKPYGHCLVAGIDRYPRKVTRRM 800
Query: 73 GSKKIQKRTSVKPFIKYVNLNHIMPTRGQINKIGELKIIN 112
G KKI+ R+ +K F+K +N NH+MPTR ++ E +IN
Sbjct: 801 GKKKIKDRSKMKAFLKVMNYNHLMPTRYSVDVNFEKALIN 920
>02707
Length = 528
Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 77/100 (77%)
Frame = +1
Query: 13 IASFGRGLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRM 72
I + + +K G+VV+LL GRFAG+KA+IVK+ +DGT+D+ +GH LVAG++R P+KVT+RM
Sbjct: 76 IFTMPKFMKSGKVVLLLHGRFAGRKAIIVKNHDDGTQDKPYGHCLVAGIDRYPRKVTRRM 255
Query: 73 GSKKIQKRTSVKPFIKYVNLNHIMPTRGQINKIGELKIIN 112
G KKI+ R+ +K F+K +N NH+MPTR ++ E +IN
Sbjct: 256 GKKKIKDRSKMKAFLKVMNYNHLMPTRYSVDVNFEKALIN 375
>25765
Length = 448
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 52/62 (83%)
Frame = +3
Query: 23 GRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTS 82
GR+ LL GRFAG+KA+IVK+ +DGT+D+ +GH LVAG++R P+KVT+RMG KKI+ R+
Sbjct: 186 GRLFCLLHGRFAGRKAIIVKNHDDGTQDKPYGHCLVAGIDRYPRKVTRRMGKKKIKDRSK 365
Query: 83 VK 84
+K
Sbjct: 366 MK 371
Score = 31.6 bits (70), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 65 PKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPTRGQIN 103
P++ + G ++ Q + + F+K +N NH+MPTR ++
Sbjct: 311 PQEGDQAYGQEENQGQVQNEGFLKVMNYNHLMPTRYSVD 427
>30799
Length = 1010
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 27 ILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKK 76
ILL RF + + +DGT+D+ +GH LVAG++R P+KVT+RMG KK
Sbjct: 811 ILLSVRFLWRGS----DHDDGTQDKPYGHCLVAGIDRYPRKVTRRMGKKK 948
Score = 33.1 bits (74), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 65 PKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMP 97
P++ + G ++I+ R+ +K F+K +N NH+MP
Sbjct: 912 PQEGDQAYGQEEIKDRSKMKAFLKVMNYNHLMP 1010
>29075
Length = 471
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 22/24 (91%)
Frame = +3
Query: 20 LKYGRVVILLQGRFAGKKAVIVKS 43
+K G+VV+LL GRFAG+KA+IVK+
Sbjct: 378 MKSGKVVLLLHGRFAGRKAIIVKT 449
>04510
Length = 685
Score = 30.0 bits (66), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 86 FIKYVNLNHIMPTRGQINKIGELKIIN 112
F+K +N NH+MPTR ++ E +IN
Sbjct: 232 FLKVMNYNHLMPTRYSVDVNFEKALIN 152
>19486
Length = 445
Score = 26.2 bits (56), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 93 NHIMPTRGQINKIGELKIINCNMGKVRYVKKEQ 125
+H + T+GQI + G+L+I+ K+R KEQ
Sbjct: 25 SHGILTKGQIKQQGDLEILTQQTHKLRNETKEQ 123
>24279
Length = 641
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 23 GRVVILLQGRFAGKKAVIVKSSEDG 47
G V+ILL GR GK+ V +K G
Sbjct: 219 GTVLILLAGRHKGKRVVFLKQLNSG 145
>12413
Length = 508
Score = 25.4 bits (54), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 23 GRVVILLQGRFAGKKAVIVKSSEDG 47
G V+ILL GR GK+ V +K G
Sbjct: 243 GTVLILLAGRHKGKRVVFLKQLNSG 169
>18735
Length = 612
Score = 25.0 bits (53), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 23 GRVVILLQGRFAGKKAVIVKSSEDG 47
G V+ILL GR GK+ V +K G
Sbjct: 504 GTVLILLAGRHKGKRVVFLKQLNSG 430
>03910
Length = 617
Score = 25.0 bits (53), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 23 GRVVILLQGRFAGKKAVIVKSSEDG 47
G V+ILL GR GK+ V +K G
Sbjct: 131 GTVLILLAGRHKGKRVVFLKQLNSG 205
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00085180__3836.m02032Ribosomal_protein_L32_containing_protei
n
(134 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
20291 114 1e-26
09165 106 3e-24
13483 28 1.4
>20291
Length = 816
Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 78/114 (68%)
Frame = +1
Query: 19 FVRFESEDFAKLDSSWRRPRGIDNXXXXXXXXXXXMAKIGFASDAATKHLLPNGFKKFLI 78
F+R +S+ + ++ SWR+P+GIDN M IG+ S T+HL P+GF+KF++
Sbjct: 433 FIRHQSDRYLRVKQSWRKPKGIDNRVRRRFKGQYLMPNIGYGSCKNTRHLCPDGFRKFVV 612
Query: 79 RNPADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQE 132
RN +LE+LLM NR + EIAH +S++ + A+V+RA +L +++TN NA+++ +E
Sbjct: 613 RNVKELEVLLMQNRRFSAEIAHCVSSRKRKAIVERAQQLSIKVTNPNARLRSEE 774
>09165
Length = 860
Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 74/110 (67%)
Frame = -2
Query: 23 ESEDFAKLDSSWRRPRGIDNXXXXXXXXXXXMAKIGFASDAATKHLLPNGFKKFLIRNPA 82
++ + ++ SWR+P+GIDN M IG+ S T+HL P+GF+KF++RN
Sbjct: 379 QTXRYLRVKQSWRKPKGIDNRVRRRFKGQYLMPNIGYGSCKNTRHLCPDGFRKFVVRNVK 200
Query: 83 DLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQE 132
+LE+LLM NR + EIAH +S++ + A+V+RA +L +++TN NA+++ +E
Sbjct: 199 ELEVLLMQNRRFSAEIAHCVSSRKRKAIVERAQQLSIKVTNPNARLRSEE 50
>13483
Length = 1059
Score = 27.7 bits (60), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 67 HLLPNGFKKFLIRNPADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANA 126
HL + K+ L++ +EI+ N + IS QVK L K EL +
Sbjct: 183 HLTDDFTKQVLVKESVTIEIITENRNFTIFTLFWCISNQVKHFLAKSTTELHSPTVTKTS 362
Query: 127 KVKV 130
VKV
Sbjct: 363 HVKV 374
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00075670__3828.m01274hypothetical_protein
(103 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04017 108 5e-25
12962 28 1.3
38408 26 3.5
06293 26 4.8
08380 25 6.7
09819 25 7.6
>04017
Length = 690
Score = 108 bits (270), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 62/83 (74%)
Frame = +3
Query: 3 KRTQKVGITRKYGTRYGASLRKVVKKFEITQHAKYGCPFCGKVAVKRAAVGIWKCKPCKK 62
KRT+KVGI KYGTRYGASLRK VKK EITQH+KY C FCGK ++KR A GIW C CKK
Sbjct: 387 KRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCGFCGKDSMKRIATGIWGCTKCKK 566
Query: 63 IIAGGAWELTTPPAVTAKTTMNR 85
++AGGAW T A + ++ + R
Sbjct: 567 VVAGGAWVYVTTAATSVRSAVRR 635
>12962
Length = 1318
Score = 27.7 bits (60), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 34 HAKYGC-PFCGKVAVKRAAVGIWKCKP 59
HA+ C P C K KR+ G W C+P
Sbjct: 365 HAQSACIPLCQKADGKRSEGGKWHCRP 285
>38408
Length = 537
Score = 26.2 bits (56), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -2
Query: 33 QHAKYGCPFCGKVAVKRAAVGIWK 56
H Y CP C K+ V + + +W
Sbjct: 419 SHFPYPCPVCNKIVVHLSIMFLWP 348
>06293
Length = 2053
Score = 25.8 bits (55), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 39 CPFCGKVAVKRAAVGIWKC 57
CP GK V AA IW C
Sbjct: 152 CPLAGKCRVYEAASTIWDC 208
>08380
Length = 1236
Score = 25.4 bits (54), Expect = 6.7, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 39 CPFCGKVAVKRAAVGIWKCKPCKKIIAGGAWELTTPPAV 77
CP A+ R+A +++C PC++ ++ AW T PP +
Sbjct: 798 CP*PRLPALPRSASHLYRCPPCRQYLS--AW--TQPPHI 902
>09819
Length = 1877
Score = 25.0 bits (53), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 55 WKCKPCKKIIAGGAWELTTPPAV 77
W C+ + GG + LT+PP+V
Sbjct: 876 WACRGRRTTAGGGTFSLTSPPSV 944
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00138260__3698.m00219ABC_transporter_family_protein
(1776 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26534 110 5e-24
27295 90 2e-20
05764 57 6e-08
02301 55 2e-07
01623 52 2e-06
03538 42 0.003
22801 41 0.005
38795 40 0.006
30281 40 0.010
20290 39 0.017
20400 39 0.026
01142 38 0.037
19255 35 0.35
18248 31 4.9
31289 30 6.4
29815 30 7.4
>26534
Length = 931
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 81/126 (64%)
Frame = +1
Query: 717 VILTTHFMDEADYLGDRIAIMGKGKLICCGSSEFLKDRFGVGYNLTIVKEDNTVDSAPII 776
++L+THFMDEAD LGDRIAIM +G + CCG+S FLK +G GY++ +VK D A +
Sbjct: 13 LLLSTHFMDEADLLGDRIAIMAEGVVKCCGTSMFLKKLYGAGYHMVMVKGPQ-CDVATVT 189
Query: 777 NFVKSINPSINVLSDVSAEITIQMKSETVNVFPTIFKGLDSQKSQFKIESYGISITTLEE 836
V++ P + S++ AE++ + E F +F+ ++SQ + I S+G + TT+EE
Sbjct: 190 AAVQAQLPGAQLESEIGAELSFLLPEEEAPKFADLFRVMESQSDELGITSFGATATTMEE 369
Query: 837 VFLRVA 842
VFL+V
Sbjct: 370 VFLKVG 387
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 1521 KQSSIILTTHSMEEAEALCTRLTIMVNGAFKCLGTLTQIKNKFGQGYEVVV 1571
+ + ++L+TH M+EA+ L R+ IM G KC GT +K +G GY +V+
Sbjct: 1 RAAQLLLSTHFMDEADLLGDRIAIMAEGVVKCCGTSMFLKKLYGAGYHMVM 153
>27295
Length = 384
Score = 89.7 bits (221), Expect(2) = 2e-20, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 61/101 (60%)
Frame = +1
Query: 1376 AGKTTTFKILAGEIQQSSGQAHIKGYDLRTQMSEAQKHIGYCPQFDALLENLTAREHLEL 1435
GKTTT +L G I +SG A + GYD+RT ++ + ++G CPQ + L + LT EHL+
Sbjct: 1 GGKTTTMSMLTGFIPPTSGTAFVNGYDIRTDINNVRSNLGLCPQHNILFDTLTVDEHLQF 180
Query: 1436 YAAIKGIPYELREGLVAKKIKEMGLSEFEHKLAGTYSGGNK 1476
+A +KG P + G VA+ KE+ L LAGT SGG +
Sbjct: 181 FARLKGCPRDEIPGAVAEMAKEVDLESKRSALAGTLSGGTE 303
Score = 29.6 bits (65), Expect(2) = 2e-20, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 1473 GGNKRKLSVAIAMLGNPPIV 1492
GG KRKLSV IA++G IV
Sbjct: 293 GGQKRKLSVGIALIGGSKIV 352
Score = 74.7 bits (182), Expect(2) = 4e-15, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Frame = +1
Query: 590 AEVNGMDIETQMEEIRTFMGVCPQHDILFDNLTVREHLYLYASFKGMTDSKLIKEEVEKF 649
A VNG DI T + +R+ +G+CPQH+ILFD LTV EHL +A KG + I V +
Sbjct: 61 AFVNGYDIRTDINNVRSNLGLCPQHNILFDTLTVDEHLQFFARLKGCPRDE-IPGAVAEM 237
Query: 650 VDDVDLREKADVLSKNLSGG-----QRRRLS 675
+VDL K L+ LSGG QRR S
Sbjct: 238 AKEVDLESKRSALAGTLSGGTET*TQRRHRS 330
Score = 26.6 bits (57), Expect(2) = 4e-15, Method: Composition-based stats.
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 688 YLDEPTSGMD 697
YLDEPTSGMD
Sbjct: 354 YLDEPTSGMD 383
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 668 GGQRRRLSVAIAFIGGSQIV 687
GGQ+R+LSV IA IGGS+IV
Sbjct: 293 GGQKRKLSVGIALIGGSKIV 352
>05764
Length = 1395
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 12/205 (5%)
Frame = -2
Query: 1340 IRKVYYTDENDPKVAVDR-VSFGIKEGDCFGLLGINGAGKTTTFKILAGEIQQSSGQAHI 1398
+ KV + P++ V + +S I G L+GI+G GK+T +L S G+ +
Sbjct: 1127 VEKVEFCYPTRPEIQVLKGISLEISAGQTAALVGISGCGKSTIISLLQRYYDPSKGRLLV 948
Query: 1399 KGYDLRTQMSEAQKHIGYCPQFDALLENLTAREHLELYAAIKGIPYELREGLVAKKIKEM 1458
G D+R A + + + +L + + R++++ G+ ++ + K
Sbjct: 947 DGTDVRDYNITALRSLLSVVSQEPILFDCSIRDNIQY-----GLESDVPMPDIIAACKTA 783
Query: 1459 GLSEFEHKLAGTY-----------SGGNKRKLSVAIAMLGNPPIVFLDEPSTGMDPEARR 1507
+ EF L Y SGG K+++++A A++ NP I+ LDE ++ +D E+ +
Sbjct: 782 NIHEFIASLPQGYDTQVGGKGTQLSGGQKQRVAIARALVRNPIILLLDEATSALDTESEK 603
Query: 1508 FMWNVISRISTKRKQSSIILTTHSM 1532
V + + R+ + I+ H +
Sbjct: 602 L---VQAALDNAREGRTCIVIAHRL 537
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Frame = -2
Query: 592 VNGMDI-ETQMEEIRTFMGVCPQHDILFDNLTVREHL-YLYASFKGMTD--SKLIKEEVE 647
V+G D+ + + +R+ + V Q ILFD ++R+++ Y S M D + +
Sbjct: 950 VDGTDVRDYNITALRSLLSVVSQEPILFD-CSIRDNIQYGLESDVPMPDIIAACKTANIH 774
Query: 648 KFVDDVDLREKADVLSKN--LSGGQRRRLSVAIAFIGGSQIVYLDEPTSGMDTSARRYIW 705
+F+ + V K LSGGQ++R+++A A + I+ LDE TS +DT + + +
Sbjct: 773 EFIASLPQGYDTQVGGKGTQLSGGQKQRVAIARALVRNPIILLLDEATSALDTESEKLVQ 594
Query: 706 DMLKQYRNDRIVILTTHFMDEADYLGDRIAIMGKGKLI 743
L R R I+ H + D I +M G+++
Sbjct: 593 AALDNAREGRTCIVIAHRLSTIQN-ADVIFVMENGQIL 483
>02301
Length = 1098
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%)
Frame = -2
Query: 666 LSGGQRRRLSVAIAFIGGSQIVYLDEPTSGMDTSARRYIWDMLKQYRNDRIVILTTHFMD 725
LSGGQ++RL++A A + I+ LDE TS +DT + + + + R V++ H +
Sbjct: 686 LSGGQKQRLAIARALVRQPAILLLDEATSALDTQSESLVQSAINECTRGRTVVIIAHRLT 507
Query: 726 EADYLGDRIAIMGKGKLICCGSSEFL 751
+ DR+ ++ KG+++ GS L
Sbjct: 506 TVEK-ADRVLVINKGRVVEEGSPSHL 432
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = -2
Query: 1472 SGGNKRKLSVAIAMLGNPPIVFLDEPSTGMDPEARRFMWNVISRISTKRKQSSIILTTHS 1531
SGG K++L++A A++ P I+ LDE ++ +D ++ + + I+ + R ++++ H
Sbjct: 683 SGGQKQRLAIARALVRQPAILLLDEATSALDTQSESLVQSAINECTRGR---TVVIIAHR 513
Query: 1532 MEEAE 1536
+ E
Sbjct: 512 LTTVE 498
>01623
Length = 1414
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 106/228 (46%), Gaps = 13/228 (5%)
Frame = +3
Query: 1341 RKVYYTDENDPKVAVDR-VSFGIKEGDCFGLLGINGAGKTTTFKILAGEIQQSSGQAHIK 1399
R +++ P VA+ + + + G ++G +G+GK+T +L ++GQ +
Sbjct: 36 RDIHFAYPGRPDVAIFKGFNLQARAGQVTAVVGPSGSGKSTVCGLLLRYYDPNAGQVMLD 215
Query: 1400 GYDL-RTQMSEAQKHIGYCPQFDALLENLTAREHLELYAAIKGIPYELREGLVAKKIKE- 1457
G ++ + + HIG Q + +L + + E++ Y A+ P + G + ++
Sbjct: 216 GQNIAELDPTWLRSHIGTVSQ-EPILFSCSVAENIA-YGAVN--PDAVTLGQIEDAARKA 383
Query: 1458 ----------MGLSEFEHKLAGTYSGGNKRKLSVAIAMLGNPPIVFLDEPSTGMDPEARR 1507
+GL + SGG ++++++A A+L NP I+ LDE ++ +D E+
Sbjct: 384 NAFNFVSTFPLGLDTMVGERGMMLSGGQRQRIAIARAILKNPEILLLDEATSALDAESEY 563
Query: 1508 FMWNVISRISTKRKQSSIILTTHSMEEAEALCTRLTIMVNGAFKCLGT 1555
+ + + ++ R ++I H + + ++ ++ +G +G+
Sbjct: 564 LVQDALEKLMGGR---TVITIAHRLSTIKT-ANQIAVLTDGVVAEMGS 695
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 10/232 (4%)
Frame = +3
Query: 530 LKIRNLQKTFHGRGEPFKAVDK-LNLTMYKDQIFVLLGHNGAXXXXXXXXXXXXXXXXXX 588
++ R++ + GR P A+ K NL Q+ ++G +G+
Sbjct: 27 IEFRDIHFAYPGR--PDVAIFKGFNLQARAGQVTAVVGPSGSGKSTVCGLLLRYYDPNAG 200
Query: 589 WAEVNGMDI-ETQMEEIRTFMGVCPQHDILFDNLTVREHLYLYASFK------GMTDSKL 641
++G +I E +R+ +G Q ILF + +V E++ Y + G +
Sbjct: 201 QVMLDGQNIAELDPTWLRSHIGTVSQEPILF-SCSVAENIA-YGAVNPDAVTLGQIEDAA 374
Query: 642 IKEEVEKFVDDVDLREKADVLSKN--LSGGQRRRLSVAIAFIGGSQIVYLDEPTSGMDTS 699
K FV L V + LSGGQR+R+++A A + +I+ LDE TS +D
Sbjct: 375 RKANAFNFVSTFPLGLDTMVGERGMMLSGGQRQRIAIARAILKNPEILLLDEATSALDAE 554
Query: 700 ARRYIWDMLKQYRNDRIVILTTHFMDEADYLGDRIAIMGKGKLICCGSSEFL 751
+ + D L++ R VI H + ++IA++ G + GS + L
Sbjct: 555 SEYLVQDALEKLMGGRTVITIAHRLSTIKT-ANQIAVLTDGVVAEMGSYQDL 707
>03538
Length = 1974
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Frame = -1
Query: 1375 GAGKTTTFKILAGEIQQSSGQAHIKGYDLRTQMSEAQKHIGYCPQFDALLENLTAREHLE 1434
G GK+T K+L G++Q S G+ K + R ++ + +H D L + + E+L+
Sbjct: 1971 GVGKSTLLKLLMGDLQPSQGE---KRMNHRLRVGKYDQHSA-----DQLNLDESPVEYLK 1816
Query: 1435 LYAAIKGIPYELREGLVAKKIKEMGLSEFEHK-LAGTYSGGNKRKLSVAIAMLGNPPIVF 1493
++L+ K + +GL+ H L SGG + ++++A P ++
Sbjct: 1815 RL-------FDLQYQDARKMLGRVGLASHAHTILNRDLSGGQRARVALAELSCRAPDVLV 1657
Query: 1494 LDEPSTGMDPEA 1505
LDEP+ +D E+
Sbjct: 1656 LDEPTNNLDIES 1621
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = -1
Query: 644 EEVEKFVDDVDLREKA-DVLSKNLSGGQRRRLSVAIAFIGGSQIVYLDEPTSGMDTSARR 702
++ K + V L A +L+++LSGGQR R+++A ++ LDEPT+ +D +
Sbjct: 1794 QDARKMLGRVGLASHAHTILNRDLSGGQRARVALAELSCRAPDVLVLDEPTNNLDIESID 1615
Query: 703 YIWDMLKQYRNDRIVI 718
+ D +K + I++
Sbjct: 1614 ALADAIKNFTGGVIIV 1567
>22801
Length = 753
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = -1
Query: 661 VLSKNLSGGQRRRLSVAIAFIGGSQIVYLDEPTSGMDTSARRYIWDMLKQYRNDRIVI 718
+L+++LSGGQR R+++A ++ LDEPT+ +D + + D +K + I++
Sbjct: 747 ILNRDLSGGQRARVALAELSCRAPDVLVLDEPTNNLDIESIDALADAIKNFTGGVIIV 574
>38795
Length = 792
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Frame = +1
Query: 664 KNLSGGQRRRLSVAIAFIGGSQIVYLDEPTSGMDTSARRYIWDMLKQYRNDRIVILTTHF 723
KN SGG R R+ +A A ++ LDEPT+ +D +A ++ + LK Y RI+++ +H
Sbjct: 127 KNFSGGWRMRIGLARALYLRPSLLLLDEPTNHLDLNACVWLEEELKNY--PRILVIISHS 300
Query: 724 MDEADYLGDRIAIMGKGKL 742
D + + + I M + KL
Sbjct: 301 QDFLNGVCNSIIHMNQKKL 357
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 1358 VSFGIKEGDCFGLLGINGAGKTTTFKILAGEI 1389
+ FGI L+G NGAGK+T K+++GE+
Sbjct: 694 LDFGIDLDTRVALVGPNGAGKSTLLKLISGEL 789
>30281
Length = 821
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Frame = -2
Query: 620 NLTVREHLYLYASFKGMTDSKLIKEEVEKFVDDVDLREKADVL-----SKNLSGGQRRRL 674
N TVR+++ L+ S + K I E+ E DV + D+ NLSGGQ++R+
Sbjct: 781 NATVRDNI-LFGSPYIRSKYKAILEQCE-LERDVAMLPGGDLTQIGEKGINLSGGQKQRV 608
Query: 675 SVAIAFIGGSQIVYLDEPTSGMDTSARRYIWDML---KQYRNDRIVILTTHFMDEADYLG 731
SVA A S + LD+P S +D+ + I+ + +L TH + +
Sbjct: 607 SVARAVYSDSDVYLLDDPLSAVDSHVGKAIFSKVIGPNGLLRGTTRVLVTHGVHWLPMV- 431
Query: 732 DRIAIMGKGKLICCGSSEFLKDRFG 756
D I ++ GK+ GS E L G
Sbjct: 430 DEILVLMDGKISERGSYEELVSHDG 356
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 48/93 (51%)
Frame = -2
Query: 1472 SGGNKRKLSVAIAMLGNPPIVFLDEPSTGMDPEARRFMWNVISRISTKRKQSSIILTTHS 1531
SGG K+++SVA A+ + + LD+P + +D + +++ + + + ++ +L TH
Sbjct: 631 SGGQKQRVSVARAVYSDSDVYLLDDPLSAVDSHVGKAIFSKVIGPNGLLRGTTRVLVTHG 452
Query: 1532 MEEAEALCTRLTIMVNGAFKCLGTLTQIKNKFG 1564
+ + + ++++G G+ ++ + G
Sbjct: 451 VHWL-PMVDEILVLMDGKISERGSYEELVSHDG 356
>20290
Length = 1550
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Frame = +3
Query: 648 KFVDDV----DLREKADVLSKNLSGGQRRRLSVAIAFIGGSQIVYLDEPTSGMDTSARRY 703
+F+ DV + E D +NLSGG+ +R+++ + + + +DEP++ +D+ R
Sbjct: 981 QFMADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLV 1160
Query: 704 IWDMLKQY--RNDRIVILTTHFMDEADYLGDRIAIM 737
++K+Y + + H A YL DR+ ++
Sbjct: 1161 AAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVI 1268
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +3
Query: 1451 VAKKIKEMGLSEFEHKLAGTYSGGNKRKLSVAIAMLGNPPIVFL-DEPSTGMDPEARRFM 1509
+A +K M + E + SGG +++++ + LG P V+L DEPS +D E R
Sbjct: 987 MADVMKPMKIEEIMDQEVQNLSGGELQRVALVLC-LGKPADVYLIDEPSAYLDSEQRLVA 1163
Query: 1510 WNVISRISTKRKQSSIILTTHSMEEAEALCTRLTIM 1545
VI R K++ ++ H A L R+ ++
Sbjct: 1164 AKVIKRYILHAKKTGFVV-EHDFIMATYLADRVIVI 1268
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 1370 LLGINGAGKTTTFKILAGEIQ 1390
LLG NG GKTT ++LAG +Q
Sbjct: 793 LLGENGTGKTTFIRMLAGNLQ 855
>20400
Length = 409
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -3
Query: 775 IINFVKSINPSINVLSDVSAEITIQMKSETVNV--FPTIFKGLDSQKSQFKIESYGISIT 832
+ F++ PS + +D E+ + E F +F+GLD+ I SYG+ T
Sbjct: 245 VSKFIQKHVPSAYLAADGQRELQYILPFEEAKKGNFRKLFQGLDASLPDLHINSYGVMDT 66
Query: 833 TLEEVFLRVAD 843
LEE+FL++ +
Sbjct: 65 NLEEIFLKITE 33
>01142
Length = 729
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Frame = -1
Query: 592 VNGMDI-ETQMEEIRTFMGVCPQHDILFDNLTVREHLYLYASFKGMTDSKLI----KEEV 646
++G++I + + ++R+ + + PQ +LF ++R +L F +DS+L + +
Sbjct: 717 IDGVNIADMGLHDLRSHLTILPQDPVLFSG-SLRMNL---DPFDEYSDSQLWTALDRAHL 550
Query: 647 EKFVDDV--DLREKADVLSKNLSGGQRRRLSVAIAFIGGSQIVYLDEPTSGMDTSARRYI 704
+FV + L + +LS GQR+ + +A + S+++ LDE T+ +D I
Sbjct: 549 RRFVSSLPAQLHFQCGEEGDSLSVGQRQLVCLARTLLRRSRVLILDEATAAVDMETDALI 370
Query: 705 WDMLKQYRNDRIVILTTHFMDEA-DYLGDRIAIMGKG 740
+ L+ + V+ H + DY D+I ++ +G
Sbjct: 369 QNTLRSAFSVCTVLTIAHRLHTILDY--DKIMVLEEG 265
>19255
Length = 570
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +1
Query: 755 FGVGYNLTIVKEDNTVDSAPIINFVKSINPSINVLSDVSAEITIQMKSETVNVFPTIFKG 814
FG N + N+ +P V S I VLS +++ + K ++V + +
Sbjct: 148 FGALNNQHLSASSNSSGFSPARTVVSSAESDIAVLSKRDSDVAVLNKRDSVASVEVLSRQ 327
Query: 815 LDSQKSQFKIESYGISITTLEEV 837
L S SQ ++SYG TT E V
Sbjct: 328 LTSDASQSDVQSYGSLTTTAEHV 396
>18248
Length = 466
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 1370 LLGINGAGKTTTFKILAGEIQQSSG 1394
+LG NG GKTT K+LAG+++ G
Sbjct: 114 MLGENGTGKTTFIKMLAGKLEPDEG 188
>31289
Length = 354
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 1129 IKHLFPSCICICMVLAYDIDTFASGENLGAISILFILYGWGIIPFTYSF 1177
I L+ SC+CIC+ L++ +D F LF+L W FT SF
Sbjct: 199 ICSLYDSCLCICLCLSFWLDCFRVW--------LFLLLLWSARLFTLSF 321
>29815
Length = 337
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 478 CFLKKNKVAISHEEIRQQRRQKDEEIQLEFNNQNNIEDVTQLLKDQENRNE 528
C+ ++ + I+ Q D+ Q E + + I D+TQ LKD ENR +
Sbjct: 47 CYELDEQLHVVGNNIKTLSIQNDQASQREDSYEETIRDLTQRLKDCENRAQ 199
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00695650__3818.m00647AMP-binding_enzyme_family_protein
(652 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13819 108 5e-24
20450 93 3e-19
13327 78 1e-14
25970 75 1e-13
26510 57 2e-08
14024 36 0.045
14264 36 0.052
37217 35 0.069
02291 35 0.070
11276 31 1.7
03756 30 4.0
34113 28 9.1
>13819
Length = 1080
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 87/163 (53%)
Frame = +2
Query: 464 TLYNNDEAFIQKYLSDSPGYYLAGDSGYFDETGYLNVMARIDDIINTAGHRLSTAAMEEA 523
T+Y + + +I Y PG Y GD + G+ + R+DD++N GHRL TA +E+
Sbjct: 11 TIYGDHQRYIDTYFKPCPGVYYTGDGAHRHPGGFYQITGRMDDVVNVTGHRLGTAEVEDV 190
Query: 524 LLKHPNIVEAAVVAQVDDFKGEIPIGFVVAKQGGNINLKEFEKECVAIVRKEIGPVASFN 583
L H ++ E+AVV D KGE FVV K+ KE E + A +++ I A +
Sbjct: 191 LDDHVDVAESAVVGFPHDIKGEGIFAFVVLKERAMETNKEIEADLKAAIKQRIASYAQPD 370
Query: 584 NCILVDKLPKTRSGKILRQTLKKIVDGEKIEKIPPTIDDASVI 626
+ + LPKTRSGKI+R+ L+K+ G+ P + D S +
Sbjct: 371 FILFTESLPKTRSGKIMRRVLRKVAAGK-----PDDLGDVSTL 484
>20450
Length = 775
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 3/217 (1%)
Frame = -3
Query: 392 LINDNYWQTETGWIISCNYKNLYTHPVK--PGSAIKPAPGFDVRILDQDNKEITEPNKLG 449
L+ Y + ++ + ++ P K GS P P + +++D + + N+ G
Sbjct: 728 LV*PKYLKNPVSLKMTAHTA*TFSTPAKYELGSCGFPTPNAEFKVIDSETGKCLGVNQAG 549
Query: 450 RICIKLPMPPSFMLTLYNNDEAFIQKYLSDSPGYYLAGDSGYFDETGYLNVMARIDDIIN 509
+ + P+ M + N +A D+ G+ GD G FD G+L ++ R ++I
Sbjct: 548 DLYKRGPL---IMRGYHKNPQATADTI--DAQGWLKTGDVGQFDSNGFLYIVDRKKELIK 384
Query: 510 TAGHRLSTAAMEEALLKHPNIVEAAVVAQVDDFKGEIPIGFVVAKQGGNINLKEFEKECV 569
G +++ A +E+ LL HP I +AAV+ + DD GE+P+ FVV GGN EKE
Sbjct: 383 YKGEQVAPAMLEDVLLSHPGISDAAVIGRPDDMAGELPMAFVVKATGGN---DLTEKEVK 213
Query: 570 AIVRKEIGPVASFNNCILVDK-LPKTRSGKILRQTLK 605
V K + + K +PK+ SGKILR+ L+
Sbjct: 212 DFVAKNVASYMQLRGGVQFRKEIPKSPSGKILRRLLR 102
>13327
Length = 549
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Frame = +3
Query: 486 AGDSGYFDETGYLNVMARIDDIINTAGHRLSTAAMEEALLKHPNIVEAAVVAQVDDFKGE 545
+GD GYFD G+L ++ R ++I ++ A +E+ LL HP I +AAV+ + DD GE
Sbjct: 12 SGDVGYFDSDGFLYIVDRKKELIKFKAEQVPPAMLEDVLLTHPGISDAAVIGRPDDMAGE 191
Query: 546 IPIGFVVAKQGGNINLKEFEKECVAIVRKEIGPVASFNNCILVDK-LPKTRSGKILRQTL 604
+P+ FVV K + +L EKE V K + + K +PK+ SGKILR+ L
Sbjct: 192 LPMAFVV-KATSHADLT--EKEVKDFVAKNVPSYMQLRGGVQFKKEIPKSPSGKILRRLL 362
Query: 605 K 605
+
Sbjct: 363 R 365
>25970
Length = 418
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Frame = -3
Query: 505 DDIINTAGHRLSTAAMEEALLKHPNIVEAAVVAQVDDFKGEIPIGFVVAKQGGNINLKEF 564
DD++N +GH +STA +E L HP + E+AVV++ KGE F+ + + +
Sbjct: 416 DDMLNVSGHLMSTAEVESVLTAHPRVAESAVVSRPHPVKGECLYCFITPNENEPFD-QAM 240
Query: 565 EKECVAIVRKEIGPVASFNNCILVDKLPKTRSGKILRQTLKKIVDGEKIEKIPPTIDDAS 624
E +VR+ IGP A + LPKTRSGKI+R+ L+KI ++ T+ D
Sbjct: 239 VSELKKMVRERIGPFAMPDVIQNAPGLPKTRSGKIMRRVLRKIAVNDRNVGDTSTLADEQ 60
Query: 625 VIPKI-------QSDVENY 636
++ ++ Q D++ Y
Sbjct: 59 IVEQLC*STRRGQVDIQCY 3
>26510
Length = 1692
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Frame = +2
Query: 446 NKLGRICIKLPMPPSFMLTLYNNDEAFIQKYLSDSPGYYLAGDSGYFDETGYLNVMARID 505
+LG C+ P ML +N +A + D G+ GD GY E G + + R+
Sbjct: 1268 GELGEYCMD---GPQKMLGYLHNQQA--TDDMIDRDGWLHTGDLGYMREDGMIIIEDRLK 1432
Query: 506 DIINTAGHRLSTAAMEEALLKHPNIVEAAVVAQVDDFKGEIPIGFVVAKQGGNINLKEFE 565
++I G ++ A +E LL HP + +A V+ D GE+P +VV K +
Sbjct: 1433 ELIKYKGFQVPPAELESLLLSHPAVQDAGVIGIPDQEAGELPRAYVVLKP----TVTASA 1600
Query: 566 KECVAIVRKEIGPVASFNNC-ILVDKLPKT 594
K+ +A V ++ P L + PKT
Sbjct: 1601 KDIMAFVEDKVNPSKRLRGGWSLXRRSPKT 1690
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 104/268 (38%)
Frame = +1
Query: 101 NVSRLAGVYRKLGVKKGDRVVIYMPMVPEAVFGMLACARIGAIHSVVFGGFAAKELSGRI 160
+ R+A K G KKGD +V +PE +LA A +G I S + ELS +
Sbjct: 316 TLRRVASGLHKRGYKKGDVIVTCTVNLPEFSILILAAAYLGVIVSPANPTYTPAELSHML 495
Query: 161 QDSKPTLILGASYGFEPGKVINYKQILDEAIDLSQVQGIKVLLLQRGDKMTAPVKVGRDF 220
+ GA F +++ Q DL +V ++ T +
Sbjct: 496 THN------GACAMFTIPQLVPLVQAAIADPDLPHSVK-EVYTFGHAEEGTEFFQALMSD 654
Query: 221 DYHSSMLFAERVDCVPVEGDHPLYILYTSGTTGQPKGIVRDTAGTCVATSWTMQHIMDIH 280
D S F + +D P L++ Y+SGTTG PKG++ + VA + + +
Sbjct: 655 DGKS---FPDNIDINP--STDVLFLPYSSGTTGLPKGVML-SHRNIVANILQFRELANTQ 816
Query: 281 KGDVYFSGSDIGWVVGHHFIVYGPLIRGATTILYEGKPTGTPDPGQFWRIIEKYRVKGLY 340
D + G + +G L GA + +P F + + ++ L
Sbjct: 817 PEDRTLGLLPFFHIYGLTCVQFGTLYDGAELVTVPRF-----EPELFLKSLHDRKITLLQ 981
Query: 341 TAPTALRAIRKDDLNGDWIKKFDISSLQ 368
P + + + + + +FD+S+++
Sbjct: 982 AVPPVVLFLARHPM----VSQFDLSNIK 1053
>14024
Length = 655
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Frame = +3
Query: 425 KPAPGFDVRILDQDNKEITEPNKLGRICIKLPMPPSFMLTLYNNDEAFIQKYLSDSPGYY 484
K PG + +I++QD N G +CI+ FM + N ++ ++ L D +
Sbjct: 195 KSLPGCESKIINQD------ANGHGELCIR--GRHVFMGYISNKEKT--EESLDDDC-WL 341
Query: 485 LAGDSGYFDETGYLNVMARIDDIINTAG 512
+GD Y D+ GY+ + R+ ++I TAG
Sbjct: 342 HSGDLAYIDDKGYVCLTGRLKELIITAG 425
>14264
Length = 1790
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 88/439 (20%), Positives = 167/439 (38%), Gaps = 38/439 (8%)
Frame = -3
Query: 117 GDRVVIYMPMVPEAVFGMLACARIGAIHSVVFGGFAAKELSGRIQDSKP-TLILGASYGF 175
D V + M P ++ +L ++G +++ AK L+ I ++P LI+G+
Sbjct: 1386 ADAVALMMQNEPAFMWTVLGLQKLGVAVALINHNLRAKPLAHAILAAEPKALIVGSG--- 1216
Query: 176 EPGKVINYKQILDEAIDLSQ-VQGIKVLLLQR-GDKMTAPVKVGRDFDYHSSMLFAERVD 233
+ + A D+ + + G+ VL+ G+ + A + D D ML D
Sbjct: 1215 --------RDVQQAAFDIQEHMHGMPVLVQGLCGEAVPAGMX---DLD----MLMT---D 1090
Query: 234 CVPVEGDHPL----------YILYTSGTTGQPKGIVRDTAGTCVATSWTMQHIMDIHKGD 283
+PV D L +YTSGTTG PK + + + T T ++D+ D
Sbjct: 1089 ALPVRPDPSLRSQMTDDTIGVYIYTSGTTGLPKPVYYNQKKLKMFT--TTAQLLDVTTQD 916
Query: 284 VYFSGSDIGWVVGHHFIVYGPLIRGATTILYEGKPTGTPDPGQFWRIIEKYRVKGLYTAP 343
+ ++ + + G L +G T++L QFW Y V +
Sbjct: 915 IVYTVLPLYHISAFGVGFMGLLHQGGTSVLKR-----KFSASQFWSDCRTYNVTIVQYIG 751
Query: 344 TALR---AIRKDDLNGDWIKKFDISSLQSISMAGERCDVPTYEWIQKHVPVLINDNYWQT 400
R A K +L+G + ++ G R D+ +E + ++ ++
Sbjct: 750 ELFRYLLAQPKSELDG-------VHKVRGAIGNGLRKDI--FEEVLTRFKIIQVCEFYAA 598
Query: 401 ETGWIISCNYKNLYTHPVKPGSA------IKPAPGFDVR--------ILDQDNKEI-TEP 445
G N++ P G + P P V+ + D++ + + +P
Sbjct: 597 TEG---VSGLFNMFNKPGAIGRVSPFLNFLAPYPSVVVKFDYSTAMPVRDKNGRCVKVKP 427
Query: 446 NKLGRICIKLP--MPPSFMLTLYN-----NDEAFIQKYLSDSPGYYLAGDSGYFDETGYL 498
++G ++P + LT+Y N++ ++ + Y+ GD Y D+ ++
Sbjct: 426 GEIGLFMSQVPDDIQTQGNLTVYKASKEANEKKLVRNAFKEGDLYFNYGDVFYLDKDYFV 247
Query: 499 NVMARIDDIINTAGHRLST 517
RI D G +ST
Sbjct: 246 YFHDRIGDTFRWKGENVST 190
>37217
Length = 548
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Frame = -2
Query: 327 FWRIIEKYRVKGLYTAPTALRAIRKDDLNGDWIKKFDISSLQSISMAGERCDVPTYEWIQ 386
F IEKYRV P + + K + + K+D+SSL + T + I+
Sbjct: 445 FLSAIEKYRVMVALMVPPLMVFLAKHPI----VDKYDLSSLLVLLCGAAPLSRETEDQIK 278
Query: 387 KHVPV-LINDNYWQTETGWIISCNYKNLYTHPVKPGSAIKPAPGFDVRILDQDNKEITEP 445
+ + + I Y +E+ +S +N KPGS G +++D D +
Sbjct: 277 ERLGIPFIRQGYGLSES--TLSVLVQN--DEHCKPGSVXVLNVGVYAKVIDPDTGKHLGA 110
Query: 446 NKLGRICIKLP 456
N+ G +C K P
Sbjct: 109 NERGELCFKGP 77
>02291
Length = 3161
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = -1
Query: 466 YNNDEAFIQKYLSDSPGYYLAGDSGYFDETGYLNVMARIDDIINTAG 512
Y NDE ++ L D+ G + +GD G D+ G+L + RI ++I TAG
Sbjct: 2096 YLNDEEKTKEALDDAGGLH-SGDVGKKDKDGFLFITGRIKELIITAG 1959
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -1
Query: 245 ILYTSGTTGQPKGIVRD----TAGTCVATSWTMQHI 276
++YTSGTTG PKG++ T V S TMQ +
Sbjct: 2849 LIYTSGTTGTPKGVMLSHDNITYTVAVNMSSTMQQL 2742
>11276
Length = 1229
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = -1
Query: 449 GRICIKLPMPPSFMLTLYNNDEAFIQKYLSDSPGYYLAGDSGYFDETGYLNVMARIDDII 508
GR+ + P P F+ T +NDE++I G+ F+E +++ A + +
Sbjct: 230 GRVTLVTPRLPQFIQTCSSNDESWINFXAIRPXGWVFK----IFNELLHVSFPAHVGQVR 63
Query: 509 NTAGHRLSTAAM 520
+ GH L +
Sbjct: 62 HHVGHHLEAXIL 27
>03756
Length = 992
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 233 DCVPVEGDHPLYILYTSGTTGQPKGIV 259
D +P + D + YTSGTTG PKG++
Sbjct: 701 DPIPPKPDDLATLCYTSGTTGDPKGVM 781
>34113
Length = 694
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 245 ILYTSGTTGQPKGIV 259
I +TSGTTG PKG+V
Sbjct: 146 ICFTSGTTGNPKGVV 102
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00277190__3694.m00013Ubiquitin_family_protein
(191 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03107 106 5e-24
00758 30 0.47
14135 30 0.48
04017 30 0.64
13455 28 3.2
04649 27 4.1
25295 27 5.7
15640 27 6.5
34270 27 6.8
>03107
Length = 1271
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Frame = +1
Query: 119 MIEVIINDRLGKKERIKCLPSDTIGILKKLIQAKTGTRAEKIKLQKWHQVFKDHITLEDY 178
MIE+ NDRLGKK R+KC P DTIG LKKLI A+TGTRA+KI L+KW+ ++KD++T+ DY
Sbjct: 103 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRADKIVLKKWYNIYKDNVTVGDY 282
Query: 179 EIHDGMSLEMYY 190
EI DGM+LE+YY
Sbjct: 283 EIKDGMNLELYY 318
>00758
Length = 1050
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 118 VMIEVIINDRLGKKERIKCLPSDTIGILKKLIQAKTGTRAEKIKLQKWHQVFKDHITLED 177
V +++ + GK ++ PSDTI +K IQ K G ++ +L + +D TL D
Sbjct: 517 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 696
Query: 178 YEIHDGMSLEM 188
Y I +L +
Sbjct: 697 YNIQKESTLHL 729
>14135
Length = 567
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Frame = +2
Query: 116 NPVMIEVII---NDR----LGKKERIKCLP-SDTIGILKKLIQAKTGTRAEKIKLQKWHQ 167
+PVM++V++ ND+ L + LP +DTI +LK + G A K KLQ
Sbjct: 128 SPVMVKVMVPNVNDKPEWKLNGQTLEFSLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGI 307
Query: 168 VFKDHITLEDYEIHDGMSLEM 188
KD TL Y G ++++
Sbjct: 308 FVKDSNTLAFYNFMMGATVQL 370
>04017
Length = 690
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = -1
Query: 118 VMIEVIINDRLGKKERIKCLPSDTIGILKKLIQAKTGTRAEKIKLQKWHQVFKDHITLED 177
V +++ + GK ++ PSDTI +K IQ K G ++ +L + +D TL D
Sbjct: 348 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 169
Query: 178 YEIHDGMSLEM 188
Y I +L +
Sbjct: 168 YNIQKESTLHL 136
>13455
Length = 809
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 120 IEVIINDRLGKKERIKCLPSDTIGILKKLIQAKTGTRAEKIKLQKWHQVFKDHITLEDYE 179
+++ + GK ++ PSDTI +K IQ K G ++ +L + +D TL DY
Sbjct: 357 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 536
Query: 180 IHDGMSLEM 188
I +L +
Sbjct: 537 IQKESTLHL 563
>04649
Length = 1590
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -2
Query: 120 IEVIINDRLGKKERIKCLPSDTIGILKKLIQAKTGTRAEKIKLQKWHQVFKDHITLEDYE 179
+++ + GK ++ PSDTI +K IQ K G ++ +L + +D TL DY
Sbjct: 449 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
Query: 180 IHDGMSLEM 188
I +L +
Sbjct: 269 IQKESTLHL 243
>25295
Length = 998
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 136 CLP-SDTIGILKKLIQAKTGTRAEKIKLQKWHQVFKDHITLEDYEIHDGMSLEM 188
LP +DTI +LK + G A K KLQ KD TL Y G ++++
Sbjct: 940 SLPLTDTISVLKAKLNEVLGMPAGKQKLQYEGIFVKDSNTLAFYNFMMGATVQL 779
>15640
Length = 559
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 107 EKLEGVSSYNPVMIE-VIINDRLGKKERIKCLPSDTIGILKKLIQAKTGT 155
++ E + N VM +++ +E LP+D+I I+ K AKTG+
Sbjct: 161 QRAEALKQANAVMRSFIVLKKHNAAREVFNKLPNDSINIVYKTWHAKTGS 310
>34270
Length = 274
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 114 SYNPVMIEV---IINDRLGKKERIKCLPSDTIGILKKLIQAKTGTRAEKIKLQKWHQVFK 170
+++ V +E + + GK ++ PSDTI +K IQ K G ++ +L + +
Sbjct: 7 TWSCVFVEACRSLSSTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 186
Query: 171 DHITLEDYEIH 181
D TL DY I
Sbjct: 187 DGRTLSDYNIQ 219
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00189460__3697.m00119Protein_kinase_domain_containing_protei
n
(605 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
18921 106 2e-23
00300 99 6e-21
13592 98 1e-20
14126 96 4e-20
09606 94 1e-19
12721 93 3e-19
03240 92 6e-19
01392 92 7e-19
01707 90 2e-18
01060 90 2e-18
15910 86 6e-17
14420 84 2e-16
06405 83 2e-16
18484 83 3e-16
13066 77 2e-14
21079 74 1e-13
31885 74 2e-13
12786 74 2e-13
19301 73 4e-13
17975 72 8e-13
01966 61 9e-13
09007 72 9e-13
01756 71 1e-12
01718 70 2e-12
13212 69 5e-12
30755 69 8e-12
04591 68 1e-11
27405 67 2e-11
19094 67 2e-11
17253 66 4e-11
19761 65 6e-11
26711 65 8e-11
29581 65 9e-11
11185 64 2e-10
04852 64 2e-10
14477 63 3e-10
14116 61 2e-09
11780 60 2e-09
07291 60 3e-09
26560 59 7e-09
02638 58 1e-08
04138 57 2e-08
28638 57 2e-08
00392 55 8e-08
21433 53 3e-07
17300 52 5e-07
29590 46 5e-07
18663 50 4e-06
18996 49 4e-06
32000 49 7e-06
20152 48 9e-06
08294 47 3e-05
37602 46 4e-05
00486 46 4e-05
00715 44 1e-04
03508 44 2e-04
20640 42 5e-04
37063 42 9e-04
17932 32 0.001
12672 41 0.002
22005 40 0.002
28157 40 0.003
17722 40 0.004
07940 39 0.006
26156 38 0.013
16708 38 0.015
18401 36 0.041
31120 36 0.047
17516 36 0.054
00394 34 0.16
31789 33 0.27
23319 33 0.46
11404 32 0.56
13078 31 1.1
31489 31 1.2
32957 31 1.9
29360 30 2.1
01106 30 2.2
21800 30 2.2
03294 30 2.6
26009 29 5.7
>18921
Length = 697
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 109/196 (55%), Gaps = 1/196 (0%)
Frame = +2
Query: 24 LGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVSL 83
LG+G++G V++ E +++A K +P+ + + E+IK EI+I+Q+ S +IV
Sbjct: 53 LGEGSYGSVFKSLHKE-TGQVLAIKQVPVDT-----DLQEIIK-EISIMQQCDSKYIVKY 211
Query: 84 YDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKHKIIH 143
Y + +L++ +EYC G + + ++ + K L E E + ++G L + IH
Sbjct: 212 YGSYFKNTDLWIVMEYCGAGSVSDIMRLRN-KTLVEREIATILYYTLKGLXYLHSRRKIH 388
Query: 144 RDIKPANIMLSN-GIAKISDFGFSRVVEKDDPALLSRLGSPLYMTPQILDGVPFNFKCDV 202
RDIK NI+L+N G AK++DFG + + + +G+P +M P+++ + ++ D+
Sbjct: 389 RDIKAGNILLNNEGHAKLADFGVAGQLTDTMAKRNTVIGTPYWMAPEVIQEIGYDCVADI 568
Query: 203 WSVGVVFFEMLYGTTP 218
WS+G+ EM G P
Sbjct: 569 WSLGITALEMAEGKPP 616
>00300
Length = 2318
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 103/208 (49%), Gaps = 9/208 (4%)
Frame = -1
Query: 21 NNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFI 80
N +G+G FGKVY + +L+A K + + +D ++ E+ EI I + + +
Sbjct: 1643 GNKIGEGQFGKVYTAVNM-STGELMALKEMKFQP-NDLQQLREMCD-EIKIFEGIQHENL 1473
Query: 81 VSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALI--FFRHIVEGFKELQK 138
V Y V + + MF+EYC G ++E K + PE LI + R IV L +
Sbjct: 1472 VKYYGVEVHKDEMLMFMEYCDTGTIEEAAK------MGLPEYLIRRYTREIVLAVNHLHE 1311
Query: 139 HKIIHRDIKPANIML-SNGIAKISDFGFSRVVEKDD--PALLSRL-GSPLYMTPQIL--- 191
+ I+HRDIK ANI L SNG K+ DFG S ++ P L G+ YM P++
Sbjct: 1310 NSIVHRDIKGANIFLTSNGHVKLGDFGCSVKLKSHTTMPGEFHNLVGTTAYMAPEVFTQN 1131
Query: 192 DGVPFNFKCDVWSVGVVFFEMLYGTTPW 219
D + D+WS+G V EM G PW
Sbjct: 1130 DQGGYGRAADIWSLGCVVIEMATGKRPW 1047
>13592
Length = 980
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 126/267 (47%), Gaps = 14/267 (5%)
Frame = +2
Query: 24 LGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVSL 83
+G+G FGKVY + +L+A K I I+ + L+ + E+ IL+ + +V
Sbjct: 8 IGQGRFGKVYTAV-NNNTGELMAMKEIAIQP--GETRALKNVAEELKILEGIKHKNLVRY 178
Query: 84 YDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALI--FFRHIVEGFKELQKHKI 141
Y + L +F+E C +G L+ ++ G PEAL F ++ G EL KH I
Sbjct: 179 YGIEVHREELLIFMELCSEGTLESLVELTGGL----PEALSRRFTAQLLSGVAELHKHGI 346
Query: 142 IHRDIKPANIMLSNG--IAKISDFGFSRVVEKDDPA---LLSRLGSPLYMTPQIL----- 191
+HRDIK ANI L +G K+ DFG + ++ L +G+ YM P++
Sbjct: 347 VHRDIKTANIFLVDGSNSLKLGDFGSAVKIQAHTTVPGELQGYVGTQAYMAPEVFTKTNS 526
Query: 192 DGVPFNFKCDVWSVGVVFFEMLYGTTPWIG-DSQVKLLQNIKSIPLKFPENPIR-SKEVK 249
DG D+WSVG V EM G PW DS +++ K + P+ P S+E
Sbjct: 527 DG--HGRLADIWSVGCVVVEMASGKRPWAQFDSNFQIM--FKVGMGEKPQAPESLSQEGH 694
Query: 250 DLLRGMLKVKEEERMSWEEIFNHPLIK 276
D + L+ ++R+S E+ K
Sbjct: 695 DFIDHCLQHDPKQRLSAIELLEQNFCK 775
>14126
Length = 1265
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 34/289 (11%)
Frame = +3
Query: 23 VLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSS---PF 79
V+G GA+G VY+ + ++ + VA K I + + + M+ + REI++L+++ P
Sbjct: 210 VIGNGAYGTVYKARDLRNQGEFVAMKRIRLNNTEEGMPMMAI--REISMLKQLEQYEHPN 383
Query: 80 IVSLYDVARTSNN-----LYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFK 134
+V L DV+ + L + EY + DL YL K L ++ G
Sbjct: 384 VVRLLDVSHNTITDREIRLNLVFEYI-EHDLATYLAKCPSPGLGPDRIKDLMLQLLNGVD 560
Query: 135 ELQKHKIIHRDIKPANIMLS-NGIAKISDFGFSRVVEKDDPALLSRLGSPLYMTPQILDG 193
L ++I+HRD+KP N+++S +G K++DFG +R+ AL + + + Y +P++L
Sbjct: 561 FLHSNRIVHRDLKPQNLLISKDGRLKLADFGLARIYSFHM-ALTTVVVTLWYRSPEVLMQ 737
Query: 194 VPFNFKCDVWSVGVVFFEMLYGTTPWIGDS---QVKLLQNIKSIPLK--FPEN------- 241
+ D+WS G +F E+ + G S Q+K + + +P +PE
Sbjct: 738 AEYGTSVDIWSCGCIFAELFTRRALFKGSSEFDQLKKIFEVIGLPPAGDWPEGVSVHRNS 917
Query: 242 -------------PIRSKEVKDLLRGMLKVKEEERMSWEEIFNHPLIKD 277
P + KDL+ ML K R+S E HP ++D
Sbjct: 918 FRPTPPVPLQTLVPEMDPQAKDLMEKMLVFKSGRRISSRESLLHPYLRD 1064
>09606
Length = 1300
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 136/308 (44%), Gaps = 41/308 (13%)
Frame = -3
Query: 13 KVDHFVVVNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAIL 72
++++FV+ LGKG +Y+G + + I I + + + +
Sbjct: 1121 RMENFVLYEE-LGKGEHSIIYKG------RRKGTINFVAIHCIEKCKR--PEVTNTVRMT 969
Query: 73 QKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEG 132
+S P +V ++ TSN+L++ +E C G L + L + L E F H+V G
Sbjct: 968 HDISHPNVVQFHEWYETSNHLWLVVELCTGGSLADILAQDH--HLPETSIRDFGIHLVTG 795
Query: 133 FKELQKHKIIHRDIKPANIML-SNGIAKISDFGFSRVVEKDDPALLSRL----------- 180
+ I+ D++P+ ++L ++G+ K +DFG S+V ++ L +
Sbjct: 794 LHYIHSLGILFHDLRPSKVLLDTSGVLKFADFGLSKVEGENLEELFFKFAEAGDQWNIQS 615
Query: 181 -----------GSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGD----SQV 225
GSP YM P++ G + D+W++G VF+EM G P++G+ ++
Sbjct: 614 AEEMMKQVPTSGSPTYMAPEVFQGAEPSIMSDLWALGCVFYEMFSGHPPFLGETYDITKD 435
Query: 226 KLLQNIKSIPL------KFPENPIRSKEVKDLLRGMLKVKEEERMSWEEIFNHP------ 273
K+L K PL + P S E +LL +L+ R+SW + H
Sbjct: 434 KVLN--KEFPLPKVKGSRLSAKP--SPEFLNLLESLLQKDSTRRLSWASLVKHAFWQGGL 267
Query: 274 --LIKDYT 279
L+K++T
Sbjct: 266 SSLVKEFT 243
>12721
Length = 821
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 63 ELIKREIAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEA 122
EL+ E+ +++ P IV +Y+ ++ L++ +E+ G L + + R+ E +
Sbjct: 211 ELLFNEVVVMRDYHHPNIVEMYNSYLVNDELWVVMEFMEGGALTDIVTNN---RMDEVQI 381
Query: 123 LIFFRHIVEGFKELQKHKIIHRDIKPANIMLS-NGIAKISDFGFSRVVEKDDPALLSRLG 181
R ++ L + +IHRDIK +I+LS +G K+ DFGF V +D S +G
Sbjct: 382 ATVCRACLKALAFLHANGVIHRDIKSDSILLSHDGKVKLXDFGFCAQVTQDLQKRKSLVG 561
Query: 182 SPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKSIP 235
+P +M P+++ +P+ + D+WS+G++ EM+ P+ + ++ ++ I+ +P
Sbjct: 562 TPYWMAPEVISRLPYGPEVDIWSLGIMVMEMIDAEPPFFNEPPLQAMRRIRDMP 723
>03240
Length = 1683
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 124/280 (44%), Gaps = 50/280 (17%)
Frame = -3
Query: 23 VLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVS 82
LG GAFG+V C +++ ++ A KS + +K E IL + + ++V
Sbjct: 1270 TLGVGAFGEV--SLCRKNDTGMLYAMKTLRKSDVLKRNQVAHVKAERDILAEADNEWVVK 1097
Query: 83 LYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKHKII 142
LY + N LY ++Y GDL L + E L EP A + +V+ + + + I
Sbjct: 1096 LYYSFQDHNYLYFVMDYVPGGDLMGLLIRME--ILDEPLARFYVAELVQAIESVHRMGFI 923
Query: 143 HRDIKPANIMLS-NGIAKISDFGF---------SRVVEKDDPALL--------------- 177
HRDIKP NI++ NG K++DFG S+ ++D
Sbjct: 922 HRDIKPDNILIDRNGHIKLTDFGLCTGFRWTHNSKYYQRDGTHARQDSMEVKCQLDEQCQ 743
Query: 178 --------------------SRLGSPLYMTPQILDGV-PFNFKCDVWSVGVVFFEMLYGT 216
S +G+P Y+ P++L + + CD WSVGV+ FEML G
Sbjct: 742 CEILKPLERRRKREQRCLAHSLVGTPNYIAPEVLSRLGGYTSVCDWWSVGVILFEMLVGH 563
Query: 217 TPWI----GDSQVKLLQNIKSIPLKFPENPIRSKEVKDLL 252
P+ ++Q K++ N K + LK P S+ KDL+
Sbjct: 562 PPFYANTPAETQYKVI-NWKDM-LKIPRESNLSQPAKDLI 449
>01392
Length = 1806
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 94/206 (45%), Gaps = 31/206 (15%)
Frame = -1
Query: 116 RLSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIMLSN----GIAKISDFGFSRVVEK 171
L E EA + RHI L I HRD+KP NI+ + KI DF + +
Sbjct: 1803 HLCEREASLVVRHIARALDFLHSKGIAHRDLKPENILCEHLDDVVPVKICDFDLASGISC 1624
Query: 172 DD-----PALLSRLGSPLYMTPQILD---GVPFNF--KCDVWSVGVVFFEMLYGTTPWIG 221
D P LL+ +GS YM P+++D G F++ +CD+WS+G++ + ML G P+ G
Sbjct: 1623 DGDGTKTPELLTPVGSAEYMAPEVVDAWVGDSFSYDKRCDLWSLGIILYIMLCGYPPFYG 1444
Query: 222 ---------------DSQVKLLQNIKSIPLKFPENPIR--SKEVKDLLRGMLKVKEEERM 264
D Q L +I+ KFP S KDL+R +L + +R
Sbjct: 1443 QCGEDCGWNRGEACHDCQDMLFNSIQDGHYKFPSQEWTSISSSAKDLIRHLLVREPRKRY 1264
Query: 265 SWEEIFNHPLIKDYTTPALAKEPAPN 290
S ++ HP I T PA + P+
Sbjct: 1263 SAADVLKHPWI--CTPPAATQLATPH 1192
>01707
Length = 757
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 3/212 (1%)
Frame = +1
Query: 24 LGKGAFGKVYRGFCVEDE-NKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVS 82
+G+G++G V++ C E ++LVA K ++S D + ++ REI +L+++ P +V
Sbjct: 88 IGEGSYGVVFK--CRNKETSQLVAIKKF-VES-EDDPLIKKIAMREIRMLKQLKHPNLVR 255
Query: 83 LYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKHKII 142
L +V R L++ +Y L E + G L EP + ++ I
Sbjct: 256 LIEVFRRKKRLHLVFDYVDHTLLNELDRYPRG--LPEPMVKRIIYQTLLAVNFCHQYNTI 429
Query: 143 HRDIKPANIMLSN-GIAKISDFGFSRVVEKDDPALLSRLGSPLYMTPQILDG-VPFNFKC 200
HRD+KP NI+++ G K+ DFGF+R++ + + Y P++L G +
Sbjct: 430 HRDVKPENILITRQGQVKLCDFGFARILTGPGDEYTDYVATRWYRAPELLVGDTQYGPPV 609
Query: 201 DVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIK 232
DVW++G VF E+L G W G S V L I+
Sbjct: 610 DVWAIGCVFAELLTGQALWPGRSDVDQLHLIR 705
>01060
Length = 1800
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 3/214 (1%)
Frame = +1
Query: 24 LGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVSL 83
+G+G +G VY+ KL A K I ++ S+ G I REIA+L+++ IV L
Sbjct: 97 IGEGTYGVVYKCRHRATGRKL-AMKKIRLRG-SEDGVPSSAI-REIAMLRELRHTNIVCL 267
Query: 84 YDVARTSNNLYMFLEYCHDGDLKEYLKK-KEGKRLSEPEALIFFRHIVEGFKELQKHKII 142
DV L++ E+ DLK Y+ K EG L + IV G + +I+
Sbjct: 268 EDVIMEDERLFLVFEFL-SMDLKMYIDKFPEGVVLDRRLVKSYVFQIVTGIXFCHQRRIV 444
Query: 143 HRDIKPANIMLSN-GIAKISDFGFSRVVEKDDPALLSRLGSPLYMTPQILDGVP-FNFKC 200
HRD+KP N+++++ G KI+DFG +R A + + Y P+IL G ++
Sbjct: 445 HRDLKPQNLLINHTGAIKIADFGMARTFALPVRAYTHEVVTLWYRAPEILMGASKYSTPV 624
Query: 201 DVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKSI 234
DVWS+G +F +ML T + GDS++ L I I
Sbjct: 625 DVWSIGTIFADMLIRTPIFKGDSEIDQLFKIFRI 726
>15910
Length = 1361
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 93/180 (51%), Gaps = 6/180 (3%)
Frame = +2
Query: 118 SEPEALIFFRHIVEGFKELQKHKIIHRDIKPANI----MLSNGIAKISDFGFSRVVEKDD 173
+E +A I+ G + + + ++HRD+KP N+ M + K++DFG SR++E +
Sbjct: 458 TEKDAARAISDILHGVQYIHANGVVHRDLKPENLLYECMTDDSKLKLADFGLSRIIEPE- 634
Query: 174 PALLSRLGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKS 233
+ + G+P Y P++L G + D+WSVGV+ + +L G P+ +++ ++ + I
Sbjct: 635 VQMSTVCGTPGYCAPEVLKGDKYTPSVDMWSVGVIAYILLCGYEPFFAENEFEMYRKIIK 814
Query: 234 IPLKFPENPIR--SKEVKDLLRGMLKVKEEERMSWEEIFNHPLIKDYTTPALAKEPAPNK 291
KF E S+ KD++R +L + ++R++ E P +K T E NK
Sbjct: 815 GEYKFDEEYWSEISENAKDVVRKLLVIDPKKRLTATEALRLPWVKGVATKTTNMEITMNK 994
>14420
Length = 528
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 91/167 (54%), Gaps = 1/167 (0%)
Frame = +2
Query: 63 ELIKREIAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEA 122
ELI EI ++++ +P IV+ D L++ +E+ G L + + + + E +
Sbjct: 35 ELIINEILVMRENQNPNIVNYLDSYLVGEELWVVMEFLAGGSLTDVVTET---CMDEGQI 205
Query: 123 LIFFRHIVEGFKELQKHKIIHRDIKPANIMLS-NGIAKISDFGFSRVVEKDDPALLSRLG 181
R ++ + L ++++IHRDIK NI+L +G K++DFGF + + + +G
Sbjct: 206 AAVCRECLQALEFLHENQVIHRDIKSDNILLGMDGSVKLTDFGFCAQLSPEQSKRSTMVG 385
Query: 182 SPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVKLL 228
+P +M P+++ + D+WS+GV+ EM+ G P++ ++ ++ L
Sbjct: 386 TPYWMAPEVVTRKQYGPTVDIWSLGVMCIEMIEGEPPYLNENPLRAL 526
>06405
Length = 1965
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 109/210 (51%), Gaps = 6/210 (2%)
Frame = +1
Query: 18 VVVNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSS 77
+ + + LG G +G VY + NK+VA +K++ + L E AI++++
Sbjct: 265 IAMKHRLGGGQYGDVYEAMW-KRYNKIVA-----VKTLKEDTMALNDFLEEAAIMKEMKH 426
Query: 78 PFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFF-RHIVEGFKEL 136
P +V L V Y+ E+ G+L +YL+ + + P AL++ I G L
Sbjct: 427 PNLVQLLGVCTREPPFYIVTEFMPHGNLLDYLRSST-REENGPTALMYMATQIASGMAYL 603
Query: 137 QKHKIIHRDIKPANIMLSNG-IAKISDFGFSRVVEKDDPALLSRLGS--PL-YMTPQILD 192
+ IHRD+ N ++++ + K++DFG +R++ KDD + +G+ P+ + P+ L
Sbjct: 604 ETKNFIHRDLAARNCLVADSNMVKVADFGLARLM-KDD-TYTAHIGAKFPIKWTAPEGLA 777
Query: 193 GVPFNFKCDVWSVGVVFFEM-LYGTTPWIG 221
F+ + D+W+ GV+ +E+ YG +P+ G
Sbjct: 778 FNRFSTRSDIWAFGVLLWELATYGMSPYPG 867
>18484
Length = 635
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Frame = +1
Query: 108 YLKKKEGKRLSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIML-SNGIAKISDFGFS 166
Y ++EGK EP A + I G L II+RD+K N+ML S G KI+DFG
Sbjct: 10 YRIQQEGK-FKEPVAAFYAAEIAVGLFFLHDQGIIYRDLKLDNVMLDSEGHIKIADFGMC 186
Query: 167 RVVEKDDPALLSRLGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVK 226
+ D + G+P Y+ P+I+ P++ D W+ GV+ FEML G P+ G+ + +
Sbjct: 187 KEGMTGDATTRTFCGTPDYIAPEIVLYQPYSKSVDWWAYGVLLFEMLAGQPPFDGEDEDE 366
Query: 227 LLQNIKSIPLKFPENPIRSKEVKDLLRGMLKVKEEERMS 265
L +I + +P+ S+E L +G+L +R+
Sbjct: 367 LFSSITDHNVSYPKA--MSREAVSLCKGLLMKNPTKRLG 477
>13066
Length = 551
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 5/196 (2%)
Frame = +3
Query: 16 HFVVVNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKV 75
H VVV+ G +G+ + C K++ + P+ + + RE+ +L K+
Sbjct: 6 HAVVVHGTFNDG-YGRNIKLAC-----KIIDKEKAPVDFVE------KFFPRELDLLTKL 149
Query: 76 SSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKE 135
P+I+ ++ + + ++F+ + GDL Y+ +E + E +A I+F +
Sbjct: 150 DHPYIIQIHSILQRXPKNFIFMRFAERGDLLTYI--QEVGFVKEKQAKIWFYQMTTALNY 323
Query: 136 LQKHKIIHRDIKPANIMLSNGI-AKISDFGFS-RVVEKDDPALLSR--LGSPLYMTPQIL 191
L + + HRD+K NI+LS+ K++DFGF+ + + +SR GS Y P+I+
Sbjct: 324 LHSYDVAHRDLKCENILLSSHFNVKLADFGFACACITESGEKYMSRTYCGSAAYAAPEIV 503
Query: 192 DGVPFNFK-CDVWSVG 206
G P+ K D WS+G
Sbjct: 504 YGAPYAPKVADAWSLG 551
>21079
Length = 878
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
Frame = +1
Query: 78 PFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQ 137
P ++ L+D + + +E+ G+L E + + + L+E + + F R I G +
Sbjct: 4 PKLLMLWDAFEAPRTMVLVMEFVGAGELFERVIRDD-FVLTERDCVHFVRQICSGVGYMH 180
Query: 138 KHKIIHRDIKPANIML----SNGIAKISDFGFSRVVEKDDPALLSRLGSPLYMTPQILDG 193
I+H D+KP N++ SN I KI DFG +R + D +L G+P ++ P++++
Sbjct: 181 TQSILHLDLKPENVLCVSDNSNQI-KIIDFGLARFYKPGD-SLQVLFGTPEFIAPEVVNY 354
Query: 194 VPFNFKCDVWSVGVVFFEMLYGTTP 218
NF D+WS+GV+ + +L G +P
Sbjct: 355 DEINFTTDMWSIGVICYILLSGLSP 429
>31885
Length = 529
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)
Frame = -2
Query: 69 IAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRH 128
+ +L ++ PF+V+L+ + +L+M ++ GDL+ +++++ R E +
Sbjct: 519 VDMLTRLDHPFLVNLWYAFQDEEDLFMVVDLFLGGDLRYHMQQEVSFR--EDCVKFYLCQ 346
Query: 129 IVEGFKELQKHKIIHRDIKPANIML-SNGIAKISDFGFSRVVEKDDPALLSRLGSPLYMT 187
+ L+ KI+HRDIKP NI+L G ++DF + +E D+ A S G+ YM
Sbjct: 345 LALVLDYLRSQKIVHRDIKPDNILLDEQGHCHVTDFNIATQLEDDELA-TSTSGTRPYMA 169
Query: 188 PQILDGVPFN------FKCDVWSVGVVFFEMLYGTTPWIGDSQVKL 227
P++ GV N F D WS+GV FE+L P+ S L
Sbjct: 168 PEVY-GVAINERRGYGFPVDWWSLGVSLFELLKKRRPFSVHSNTSL 34
>12786
Length = 460
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 22/117 (18%)
Frame = -3
Query: 125 FFRHIVEGFKELQKHKIIHRDIKPANIMLSNGIAKISDFGFSRVVEKDDPALL--SRLGS 182
++R ++ K L +IH D+KPAN ML G K+ DFG + +++D ++L SR+G+
Sbjct: 395 YWREMLRAVKALHNEGVIHSDLKPANFMLVAGNLKLIDFGIANTLQQDKTSVLKDSRVGT 216
Query: 183 PLYMTPQIL--------------DG------VPFNFKCDVWSVGVVFFEMLYGTTPW 219
P YM+P+ + DG + DVWS+G + + M+YG TP+
Sbjct: 215 PSYMSPEAIMAACDDSADDSMEEDGHRTKPKYKVGVRSDVWSLGCILYNMVYGRTPF 45
>19301
Length = 712
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
Frame = +2
Query: 24 LGKGAFGKVYRG-FCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVS 82
LG GA G V+ G C E+ VA K K+ ++ + +I L+K++ P I+S
Sbjct: 329 LGSGAQGAVFLGKLCAEE----VAVK-----------KVRDIKETDIRNLRKLNHPNIIS 463
Query: 83 LYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKHKII 142
V + + +EYC G L E L+ +GK + L + + I G L HKII
Sbjct: 464 FKGVCTQAPCYCIIMEYCPYGQLYEVLR--DGKEIPPALVLDWSKQIASGMNYLHSHKII 637
Query: 143 HRDIKPANIMLS-NGIAKISDFGFS 166
HRD+K N++++ N + KISDFG S
Sbjct: 638 HRDLKSPNVLVAKNDVVKISDFGTS 712
>17975
Length = 449
Score = 71.6 bits (174), Expect = 8e-13, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +3
Query: 67 REIAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFF 126
+E+ ++ V P +V LY+V T LY+ LE GD+ +Y+ + G L E A +F
Sbjct: 111 QEVRCMKLVQHPNVVRLYEVIDTQTKLYLILELGDGGDMYDYIMRHSGG-LEEKLAKRYF 287
Query: 127 RHIVEGFKELQKHKIIHRDIKPANIML--SNGIAKISDFGFS 166
R IVE K ++HRD+KP N++ G+ K++DFGFS
Sbjct: 288 RQIVEAISYCHKLHVVHRDLKPENVVFFEKPGLVKLTDFGFS 413
>01966
Length = 1735
Score = 61.2 bits (147), Expect(2) = 9e-13, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Frame = -1
Query: 67 REIAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKK-KEGKRLSEPEALIF 125
REIA+L+++ IV L DV L++ E+ DLK Y+ K EG L +
Sbjct: 1567 REIAMLRELRHTNIVCLEDVIMEDERLFLVFEFL-SMDLKMYIDKFPEGVVLDRRLVKSY 1391
Query: 126 FRHIVEGFKELQKHKIIHRDIKPANIMLSN-GIAKISDFGFSRVVEKDDPALLSRLGSPL 184
IV G + +I+HRD+KP N+++++ G KI+DFG +R A + +
Sbjct: 1390 VFQIVTGINFCHQRRIVHRDLKPQNLLINHTGAIKIADFGMARTFALPVRAYTHEVVTLW 1211
Query: 185 YMTPQILDG---VPFNFKC 200
Y P+IL G P + C
Sbjct: 1210 YRAPEILMGPQSTPPXWTC 1154
Score = 30.0 bits (66), Expect(2) = 9e-13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 201 DVWSVGVVFFEMLYGTTPWIGDSQVKLLQNI 231
DVWS+G +F +ML T + GDS++ L I
Sbjct: 1160 DVWSIGTIFADMLIRTPIFKGDSEIDQLFKI 1068
>09007
Length = 1440
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 134/294 (45%), Gaps = 17/294 (5%)
Frame = -1
Query: 18 VVVNNVLGKGAFGKVYRG-FCVEDENKL-VAAKAIPIKSISDSGKMLELIKREIAILQKV 75
V ++ LG+G FG V + + E K+ VA K + I G+ E +K E AI+Q +
Sbjct: 873 VALSKSLGQGHFGTVRQAIWTAESGEKVQVAVKCLSKDKIHKDGQ--EFLK-ETAIMQML 703
Query: 76 SSPFIVSLYDVARTSN-NLYMFLEYCHDGDLKEYLKKKEGK-RLSEPEALIFFRHIVEGF 133
IV +Y V + ++ + E L E +K+ + S P F + + +G
Sbjct: 702 DHENIVRVYGVVMDNGADIMLVTELAPMRSLLECVKEVSARVDFSVPRLCDFSQQVCDGM 523
Query: 134 KELQKHKIIHRDIKPANIML-SNGIAKISDFGFSRVVEKDDPALLSRLGSPL-----YMT 187
L+ +++HRD+ NI+L S KISD G S + S+ L +
Sbjct: 522 SYLESKRLVHRDLAARNILLFSKSKVKISDVGVSGALGAGKEYYQSQQTIHLQNAVAWCA 343
Query: 188 PQILDGVPFNFKCDVWSVGVVFFEML-YGTTPWIGDSQVKLLQNIKSIPLKFPENPIRSK 246
P+ + F+ DVW+ GV+ +E +G PW G + ++++ + + + E P
Sbjct: 342 PESFRNLCFSSASDVWAFGVLLWEFFTHGFQPWAGLNGQQIMEAVDAPQSQRLEQPDLCP 163
Query: 247 EVKDLLRGMLKVKEEE---RMSWEEIF-NHPLIKDYTTPALAKEPA--PNKDDL 294
K+ MLK E+E R ++ ++F P I+ A+ P+ P+KD L
Sbjct: 162 --KEYYAVMLKCWEQEPQRRPTFSQLFLTLPQIRPIQVKAVKDAPSSTPDKDHL 7
>01756
Length = 1858
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 19/213 (8%)
Frame = -3
Query: 24 LGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVSL 83
+G+G FG+V++ C + ++VA K + + + + + L REI ILQ ++ +V L
Sbjct: 1718 IGQGTFGEVFKARC-KKTKQVVAMKKVLMDNEKEGFPITAL--REIKILQLLNHENVVDL 1548
Query: 84 YDVARTSNN--------LYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKE 135
++ T Y+ E+C + DL L + PE + ++ G
Sbjct: 1547 IEICSTKATSANRYKSMFYLVFEFC-EHDLAGLLSNM-SVVFNLPEIKEVMKQLMNGLYY 1374
Query: 136 LQKHKIIHRDIKPANIMLS-NGIAKISDFGFSRVVE---KDDPALLSRLGSPLYMTPQIL 191
+ ++KI+HRD+K ANI+++ G+ K++DFG +R + +R+ + Y P++L
Sbjct: 1373 IHRNKILHRDMKAANILITKQGVLKLADFGLARAFSVNLRQPNRYTNRVVTLWYRPPELL 1194
Query: 192 DG-VPFNFKCDVWSVGVVFFEM------LYGTT 217
G ++ D W G + EM + GTT
Sbjct: 1193 LGDRNYSTAIDQWGAGCIMAEMWTRNPIMQGTT 1095
>01718
Length = 959
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Frame = +3
Query: 67 REIAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFF 126
RE+ +L ++ I+ V L+ EY G+L++ L+KK+ + L + +
Sbjct: 279 REVQLLNRLQHANILRFMGVCVHEGQLHALTEYIPSGNLEQLLEKKD-EELPWTQRIQLT 455
Query: 127 RHIVEGFKELQKHKIIHRDIKPANIML----SNGI-AKISDFGFS-RVVEKDDPALLSRL 180
+ G L + IHRD+ NI++ ++G A I+DFG + ++ + D L +
Sbjct: 456 LGLARGLDYLHSTRFIHRDLTSKNILIRREDNHGYHAVIADFGLATKIPDPLDKEKLPTV 635
Query: 181 GSPLYMTPQILDGVPFNFKCDVWSVGVVFFEM 212
GSP +M P++L+G +N + D++SVG++ E+
Sbjct: 636 GSPYWMAPEVLNGHFYNERADLFSVGIIMCEI 731
>13212
Length = 1067
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 8/173 (4%)
Frame = -1
Query: 115 KRLSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIMLS-NGIAKISDFGFSRVVEKDD 173
K ++E + + L +H +IHRDIK N++L+ +G K++DFG S +
Sbjct: 995 KPMTEAQICYVCHEMCMALDFLHRHHVIHRDIKAGNVLLTIDGEVKLADFGVSAKNTQTQ 816
Query: 174 PALLSRLGSPLYMTPQI-----LDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVKLL 228
+ +G+P +M P++ L P++FK D+WS+GV E P +++L
Sbjct: 815 QKRDTFIGTPYWMAPEVVLCETLKDTPYDFKADIWSLGVTLIEFAQIEPPNKEMHPMRVL 636
Query: 229 QNI-KSIPLKFPENPIR-SKEVKDLLRGMLKVKEEERMSWEEIFNHPLIKDYT 279
I KS P E P + +K KD + L R + E+ HP +K T
Sbjct: 635 IKIHKSDPPTL-EKPKKWTKLFKDFIAKCLVKDPNLRPTAAELLEHPFMKRAT 480
>30755
Length = 1137
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Frame = +2
Query: 117 LSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIMLS-NGIAKISDFGFSRVVEKDDPA 175
+E + I+ L II+RD+K N++L +G K++DFG +
Sbjct: 23 FTEERTRFYGAEIISALGYLHSQGIIYRDLKLENLLLDKDGHIKVADFGLCKEDITYGRT 202
Query: 176 LLSRLGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKSIP 235
+ G+P Y+ P++LD + D W GVV +EM+ G P+ L I
Sbjct: 203 TKTFCGTPEYLAPEVLDDNDYGRAVDWWGTGVVMYEMICGRLPFYNRDHDVLFTLILVED 382
Query: 236 LKFPENPIRSKEVKDLLRGMLKVKEEERMSW-----EEIFNHPL 274
+KFP N + E K LL G+L R+ +EI HP
Sbjct: 383 VKFPRN--ITDEAKSLLSGLLAKDPRNRLGGGQDDVKEIQAHPF 508
>04591
Length = 1117
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 10/156 (6%)
Frame = -2
Query: 67 REIAILQKVSSPFIVSLYDVARTS--------NNLYMFLEYCHDGDLKEYLKKKEGKRLS 118
REI ILQ++ +V L ++ T + Y+ EYC D DL L K S
Sbjct: 1074 REIKILQQLEHENVVQLQEICHTQAGPYNRYKSTFYLIFEYC-DYDLAGLLNNLRVK-FS 901
Query: 119 EPEALIFFRHIVEGFKELQKHKIIHRDIKPANIMLS-NGIAKISDFGFSRVVEKDDPALL 177
+ ++ G + +I+HRDIK ANI+L+ +G+ K++DFG SR K L
Sbjct: 900 LADKKNLMSQLLNGLFYIHTKQILHRDIKAANILLTRDGVLKLADFGLSRPWVKSK-RLT 724
Query: 178 SRLGSPLYMTPQILDG-VPFNFKCDVWSVGVVFFEM 212
+R+ + Y P++L G + + D+W VG + EM
Sbjct: 723 NRVVTLWYRPPELLLGEREYGPEIDMWGVGCIMAEM 616
>27405
Length = 532
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 4/168 (2%)
Frame = -3
Query: 28 AFGKVYRGFCVEDENKLVAAKAIPIKSIS-DSGKMLELIKREIAILQKVS--SPFIVSLY 84
FG+VY G D K+ A K + K I G+ L L +R + L SPFIV +
Sbjct: 530 GFGEVY-GCRKADTGKMYAMKCLDKKRIKMKGGETLALNERIMLSLVSTGEGSPFIVCMT 354
Query: 85 DVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKHKIIHR 144
+T L L+ + GDL +L + +E E + ++ G + + +++R
Sbjct: 353 YAFQTPEKLCFILDLMNGGDLHYHLSQH--GVFTEKEVRFYAAEVMLGLEHMHSRFVVYR 180
Query: 145 DIKPANIML-SNGIAKISDFGFSRVVEKDDPALLSRLGSPLYMTPQIL 191
D+KPANI+L NG +ISD G + K P + +G+ YM P++L
Sbjct: 179 DLKPANILLDENGHVRISDLGLACDFSKKKPH--ASVGTHGYMAPEVL 42
>19094
Length = 898
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +1
Query: 115 KRLSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIMLSN-GIAKISDFGFSRVVEKDD 173
K L E E + ++G L + IHRDIK NI+L+N G AK++DFG + +
Sbjct: 43 KTLVEREIATILYYTLKGL*YLHSRRKIHRDIKAGNILLNNEGHAKLADFGVAGQLTDTM 222
Query: 174 PALLSRLGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYG 215
+ +G+P +M P+++ + ++ D+WS+G+ EM G
Sbjct: 223 AKRNTVIGTPYWMAPEVIQEIGYDCVADIWSLGITALEMAEG 348
>17253
Length = 483
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Frame = -1
Query: 67 REIAILQKVSS-PFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKR--------- 116
RE++I++K+ P +VS S+ + +E+C GDL +L+K+ R
Sbjct: 402 RELSIMRKLPRHPNVVSFMGCCTMSDPALILMEFCCHGDLLSFLRKRRPDRTVFLTSTAN 223
Query: 117 -LSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIMLSN-GIAKISDFGFSRVV--EKD 172
L+ + F H+ G + +KI+HRD+ N+++S + K+SDFG SR V + D
Sbjct: 222 DLTARDFFSFALHVARGMAHVANNKIVHRDVAARNVLISERNVCKVSDFGLSRRVGDQND 43
Query: 173 DPALLSRLGSPL 184
++SR PL
Sbjct: 42 VYEIVSRRPLPL 7
>19761
Length = 473
Score = 65.5 bits (158), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Frame = -3
Query: 120 PEALI--FFRHIVEGFKELQKHK--IIHRDIKPANIMLS-NGIAKISDFGFSRVVEKDDP 174
PE LI + + H I+HRD+KP NI ++ G ++ D G +R +
Sbjct: 429 PERLIVCWLMQTASALNYMHTHTPVILHRDLKPQNIYVTEKGDVRLGDLGLARKLTGPAD 250
Query: 175 ALLSRLGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVK----LLQN 230
S++G+ +Y++P+IL P+N K D+WS+G VF+++ T G ++ L+Q
Sbjct: 249 FATSQVGTIMYLSPEILSQQPYNSKSDIWSLGCVFYDI----TGKKGSDEMGVMFLLVQV 82
Query: 231 IKSIPLKFPENPIRSKEVKDLLRGML 256
+ L P++ S+E +D + ML
Sbjct: 81 MGGRKLPLPDH--YSQEFRDTISRML 10
>26711
Length = 405
Score = 65.1 bits (157), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Frame = -2
Query: 127 RHIVEGFKELQKHKIIHRDIKPANIMLSNG---IAKISDFGFSRVVEKDDPALLSRLGSP 183
+ +++ + + ++H D+KP+N++LS ++ DFG +R + L+ G+P
Sbjct: 395 KQVLDILQHVHAQGVVHMDLKPSNLLLSGDKLDSVQLIDFGLARKLYPPQETFLNH-GTP 219
Query: 184 LYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKSIPLKF---PE 240
+ +P+ LD P + DVW VGV+ + +L G +P+ DS + L+ ++ F P
Sbjct: 218 GFTSPEALDVKPISTASDVWGVGVLAYILLSGQSPFQADSATESLKKTQTCDWSFDVCPS 39
Query: 241 NPIRSKEVKDLL 252
S++ KD +
Sbjct: 38 FSNMSQDAKDFI 3
>29581
Length = 1278
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 117/274 (42%), Gaps = 32/274 (11%)
Frame = -2
Query: 41 ENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVSLYDVARTSNNLYMFLEYC 100
E +V+ + ++S +L L + I LQ+V V ++ ++L++ +EYC
Sbjct: 1241 ERDMVSPSVVCVRSTF----LLNLRHQNIVQLQEVV---------VGKSLDSLFLVMEYC 1101
Query: 101 HDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIMLSN-GIAK 159
+ DL L SE + +++G + L + IIHRD+K +N+++++ G K
Sbjct: 1100 -EQDLASLLDNMPAP-FSESQVKCIVLQLLKGLRYLHEAFIIHRDLKVSNLLMTDKGCVK 927
Query: 160 ISDFGFSRVVEKDDPALLSRLGSPLYMTPQILDGV-PFNFKCDVWSVGVVFFEM------ 212
I+DFG +R K + ++ + Y P++L G + D+WS G + E+
Sbjct: 926 IADFGLARNYGKPQKPMTPKVVTLWYRAPELLFGSKTHSTAIDMWSAGCILGELLGHKPL 747
Query: 213 ---------------LYGT---TPWIGDSQVKLLQNIKSIPLKFPENPIR------SKEV 248
L GT T W G SQ+ + K P N +R S+
Sbjct: 746 MPGRSDLQQIELIMELLGTPNDTIWPGFSQLPAFEQFTLK--KQPYNNLRHTFPWLSESG 573
Query: 249 KDLLRGMLKVKEEERMSWEEIFNHPLIKDYTTPA 282
LL G+ ++R + E+ H K+ P
Sbjct: 572 IRLLNGLFMYHPQKRATAEDCLEHSYFKEQPYPC 471
>11185
Length = 473
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 23/168 (13%)
Frame = +1
Query: 128 HIVEGFKELQKHKIIHRDIKPANIML-SNGIAKISDFGFSRVVEKDDPALLSRL------ 180
H+V G + I+ D++P+ ++L ++G+ K +DFG S+V ++ L +
Sbjct: 25 HLVTGLHYIHSLGILFHDLRPSKVLLDTSGVLKFADFGLSKVEGENLEELFFKFAEAGDQ 204
Query: 181 ----------------GSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQ 224
GSP YM P++ G + D+W++G VF+EM G+
Sbjct: 205 WNIQSAEEMMKQVPTSGSPTYMAPEVFQGAEPSIMSDLWALGCVFYEMFSGS-------- 360
Query: 225 VKLLQNIKSIPLKFPENPIRSKEVKDLLRGMLKVKEEERMSWEEIFNH 272
+ P S E +LL +L+ R+SW + H
Sbjct: 361 ------------RLSAKP--SPEFLNLLESLLQKDSTRRLSWASLVKH 462
>04852
Length = 1462
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 14/196 (7%)
Frame = +1
Query: 91 NNLYMFLEYCHDG-----------DLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKH 139
NL FLE C DG D Y K G + L + I G + L
Sbjct: 205 GNLRDFLESCRDGINGYGKFVSPQDPGWYTKTPGGHVIRRKNLLSYAFQIARGMEFLASR 384
Query: 140 KIIHRDIKPANIMLSN-GIAKISDFGFSRVVEKDDPALLSRLGSPL-YMTPQILDGVPFN 197
K IHRD+ N++++ + KI+DFG SR + RL P+ +M P+ L + +
Sbjct: 385 KCIHRDLAARNVLVTEEHVLKIADFGLSRTGDYYKKRSGGRL--PVKWMAPEALFDMRYT 558
Query: 198 FKCDVWSVGVVFFEML-YGTTPWIGDSQVKLLQNIKSIPLKFPENPIRSKEVKDLLRGML 256
K DVWS GVV +E+ G P+ +L + + P + S + ++
Sbjct: 559 TKSDVWSFGVVLWEIFSLGGMPYASIPNEELYSKLLDDAYRMPRPELASGNLYAIMERCW 738
Query: 257 KVKEEERMSWEEIFNH 272
+ +R + ++ H
Sbjct: 739 LNRPSDRPEFSQLVGH 786
>14477
Length = 493
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
Frame = -1
Query: 24 LGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPFIVSL 83
LG G FG V +G C D+ ++ A + + D ELIK E +++K+ IV L
Sbjct: 466 LGAGNFGSVMKGVCRLDDREIPVAIKVLKNADLDPSVQSELIK-EAEVMKKMDHMHIVRL 290
Query: 84 YDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKHKIIH 143
+ + + LE G L ++L K K L L + +G + L+ +K +H
Sbjct: 289 IGLCE-GETMMLVLELAKLGPLNKFLPKN--KHLPLWNILELMWQVSQGMEYLEANKFVH 119
Query: 144 RDIKPANIMLSN-GIAKISDFGFSRVVEKDD 173
RD+ NI+L + AKISDFG S+ + +++
Sbjct: 118 RDLAARNILLCDEHFAKISDFGMSKTLSREN 26
>14116
Length = 1017
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 10/207 (4%)
Frame = -1
Query: 17 FVVVNNVLGKGAFGKVYRGFCVEDENK---LVAAKAIPIKSISDSGKMLEL--IKREIAI 71
F+ + +GKG FG V RGF E K LVA K + +++ + +EL +E I
Sbjct: 633 FLTMGEEIGKGNFGCVKRGFLTLPEQKGDILVAVKTLH----NNNPREIELQSFLQEALI 466
Query: 72 LQKVSSPFIVSLYDVARTSNNL-YMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIV 130
++ +++L + +++ + L + GDL Y++ + + + + +++ I
Sbjct: 465 MKDFHHSNVLTLIGICLNLDDMPLVVLPFMKHGDLLTYIRDDQ-HQPTIKDLIMYGVDIA 289
Query: 131 EGFKELQKHKIIHRDIKPANIMLSNGI-AKISDFGFSR-VVEKDDPALLSRLGS-PL-YM 186
G L K +HRD+ N ML K++DFG +R + EK+ + ++ P+ +M
Sbjct: 288 RGMDYLAGLKFVHRDLAARNCMLDEDFHVKVADFGLARDIYEKEYYSSENKKAKLPVKWM 109
Query: 187 TPQILDGVPFNFKCDVWSVGVVFFEML 213
+ L+ ++ K DVWS GVV +E+L
Sbjct: 108 ALESLEKGNYDSKTDVWSYGVVLWELL 28
>11780
Length = 1713
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Frame = +3
Query: 20 VNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPF 79
+ +GKG FG VY+G + + + IK + D + + +E +++ +
Sbjct: 609 IGEAIGKGDFGDVYKG--------MYRGQPVAIKQLKDKDRGEQSFLQEASVMTSLRHDN 764
Query: 80 IVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKH 139
+V L V +++ E+ G+L EYL+ + +++ + + F + L+
Sbjct: 765 LVRLIGVV-LGETIFLVTEFMGKGNLVEYLRSRGRSVITKKDQINFATDTCAAMEYLESK 941
Query: 140 KIIHRDIKPANIML-SNGIAKISDFGFSR 167
+++HRD+ N+++ +G AK+SDFG ++
Sbjct: 942 RLVHRDLAARNVLVHDDGKAKVSDFGLAK 1028
>07291
Length = 833
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Frame = +1
Query: 112 KEGKRLSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIMLS-NGIAKISDFGF----- 165
K K L+ + L F R I +G LQ+ K++HR++ N +++ +G ++SD+G
Sbjct: 25 KPSKMLTVVQLLDFGRQIADGMAYLQEVKVVHRNLAARNCIVTEDGRLQLSDYGVTGSLF 204
Query: 166 --SRVVEKDDPA--LLSRLGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLY-GTTPWI 220
S D PA L+ +M P+ +D F+ K DVW+ GVV +E+L G TP+
Sbjct: 205 PQSYYTADDSPARDLVK------WMAPETIDNFHFSSKSDVWAFGVVLWELLTRGITPYP 366
Query: 221 GDSQVKLLQNIK 232
LL +K
Sbjct: 367 DVENSSLLPYLK 402
>26560
Length = 398
Score = 58.5 bits (140), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Frame = -1
Query: 117 LSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIML-SNGIAKISDFGFSRVVEKDDPA 175
+E E + ++ G + + +++RD+KPANI+L NG +ISD G + K P
Sbjct: 365 FTEKEVRFYAAEVMLGLEHMHSRFVVYRDLKPANILLDENGHVRISDLGLACDFSKKRPH 186
Query: 176 LLSRLGSPLYMTPQIL-DGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQ 224
+ +G+ YM P++L G ++ D +S G + +++L G +P+ +Q
Sbjct: 185 --ASVGTHGYMAPEVLMKGQSYDSSADWFSFGCMLYKLLKGHSPFRQHNQ 42
>02638
Length = 1490
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Frame = +1
Query: 180 LGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPW----IGDSQVKLLQNIKSI- 234
LG+ +M P++L G + CDVWSVG V EM PW I + + + S+
Sbjct: 19 LGTIAFMAPEVLRGESYGRACDVWSVGCVMIEMCTCRPPWNSHDISNHLALIFKIASSVD 198
Query: 235 PLKFPENPIRSKEVKDLLRGMLKVKEEERMSWEEIFNHPLIKDYT 279
P PEN S V+DL+ L+ + R S +++ HPL Y+
Sbjct: 199 PPPIPEN--MSPPVRDLMLRCLEQDSDFRPSAKDLLMHPLFTKYS 327
>04138
Length = 800
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 37/174 (21%)
Frame = +1
Query: 136 LQKHKIIHRDIKPANIMLS-NGIAKISDFGFSRVVE---KDDPALLSRLGSPLYMTPQIL 191
+ ++KI+HRD+K ANI+++ G+ K++DFG +R + +R+ + Y P++L
Sbjct: 61 IHRNKILHRDMKAANILITKQGVLKLADFGLARAFSVNLRQPNRYTNRVVTLWYRPPELL 240
Query: 192 DG-VPFNFKCDVWSVGVVFFEM------LYGTTP------------------WIGDSQVK 226
G ++ D W G + EM + GTT W G +Q+
Sbjct: 241 LGDRNYSTAIDQWGAGCIMAEMWTRNPIMQGTTEQNQLTLITQLCGSITPEVWPGVTQLS 420
Query: 227 LLQNIKSIPLKFPENPIRSKEVK--------DLLRGMLKVKEEERMSWEEIFNH 272
+ IK +N IR + + DL +LK+ +R+S +E NH
Sbjct: 421 MYHQIKGALAAGRKNIIRDRFARILKDPYGLDLFERLLKMDPSQRISADEALNH 582
>28638
Length = 1458
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = -1
Query: 133 FKELQKHKIIHRDIKPANIMLSN---GIAKISDFGFSRVVEKDDPALLSRLGSPLYMTPQ 189
F + IIH D+KP NI+L N KI DFG S + + + + S Y +P+
Sbjct: 792 FLATPEMNIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQR---IYQYIQSRFYRSPE 622
Query: 190 ILDGVPFNFKCDVWSVGVVFFEMLYGTTP 218
+L GVP++ D+WS+G + EM G P
Sbjct: 621 VLLGVPYDLAIDMWSLGCILVEMHTGEPP 535
>00392
Length = 668
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Frame = +3
Query: 66 KREIAILQKVSSPFIVSLYDVARTSNN-----LYMFLEYCHDGDLKEYLKKKEGKRLSEP 120
K E +L+++ P IV +D N+ + + E G LK YLK R +P
Sbjct: 75 KEEAEMLKELQHPNIVRFFDYWEEHNHRNRKVIILVTELMTSGTLKTYLK-----RFKKP 239
Query: 121 EALI---FFRHIVEG--FKELQKHKIIHRDIKPANIMLSN--GIAKISDFGFSRVVEKDD 173
I + R +++G F + +IHRD+K NI ++ G KI D G + + K+
Sbjct: 240 NVKILKNWCRQVLKGLYFLHTRTPPVIHRDLKCDNIFITGPTGSVKIGDLGLATL--KNQ 413
Query: 174 PALLSRLGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDS-QVKLLQNIK 232
S +G+P +M P++ + ++ DV++ G+ EM P+ S ++ + +
Sbjct: 414 SFAKSVIGTPEFMAPEMYEE-HYDEAVDVYAFGMCMLEMASSEYPYSECSNAAQIYKRVT 590
Query: 233 SIPLKFPENPIRSKEVKDLLRGML 256
S L + + E++D++ +
Sbjct: 591 SGVLPEALDKVAITEIRDIIHHCI 662
>21433
Length = 590
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 140 KIIHRDIKPAN-IMLSNGIAKISDFGFSRVVEKDDPALLSRLGSPLYMTPQILDGVPFNF 198
K+IHRDIKP N ++ G KI+DFG+S V + G+ Y+ P++++G +
Sbjct: 227 KVIHRDIKPENLLLGLKGDLKIADFGWS--VHAPSSRRTTMCGTLDYLPPEMVEGKTHDE 400
Query: 199 KCDVWSVGVVFFEMLYGTTP 218
D+WS+GV+ +E L GT P
Sbjct: 401 NVDLWSLGVLCYEFLVGTPP 460
>17300
Length = 480
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Frame = +1
Query: 129 IVEGFKELQKHKIIHRDIKPANIMLSN-GIAKISDFGFSRVVEKD--DPALLSRLGS-PL 184
I G L +HRD+ NI+++ + K++DFG SR +E D + A ++ G P+
Sbjct: 1 ISSGMGXLADMGYVHRDLAARNILVNEILVCKVADFGLSREIESDTTEGAYTTKGGKIPV 180
Query: 185 YMT-PQILDGVPFNFKCDVWSVGVVFFE-MLYGTTP---WIGDSQVKLLQNIKSIPLKFP 239
T P+ + F DVWS GVV +E M YG P W +K ++ +PL
Sbjct: 181 RWTAPEAIAYRKFTSASDVWSFGVVMWEVMSYGERPYWNWSNQDVIKAVEKGYRLPLHGL 360
Query: 240 ENPIRSKEVKDLLRG 254
S + + L G
Sbjct: 361 SGSPSSTDARRLAEG 405
>29590
Length = 320
Score = 46.2 bits (108), Expect(2) = 5e-07, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +3
Query: 180 LGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVK 226
+G+P Y+ P++LD P + + D+WS+GV+ + ML +P++G + K
Sbjct: 57 IGTPDYVAPEVLDYEPLSIQTDMWSLGVLSYVMLTACSPFVGITSKK 197
Score = 25.8 bits (55), Expect(2) = 5e-07, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 221 GDSQVKLLQNIKSIPLKFPENPIR--SKEVKDLLRGMLKVKEEERMS 265
GD+Q + NI + L FP++ S KD ++ +L RM+
Sbjct: 179 GDNQQETFCNISQVKLDFPDDLFSHISPHAKDFIKKLLVKDPRHRMT 319
>18663
Length = 600
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 17/113 (15%)
Frame = +2
Query: 181 GSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPW--IGDSQVK-------LLQNI 231
G+P Y+ P+IL G + F D W++GV+ +EML G +P+ G S+ L Q I
Sbjct: 14 GTPNYIAPEILRGEDYGFSVDWWALGVLLYEMLAGRSPFDIAGASENPDQNTEDYLFQVI 193
Query: 232 KSIPLKFPENPIRSKEVK--DLLRGMLKVKEEERM------SWEEIFNHPLIK 276
++ P RS VK +L+G L +R+ ++ +I NHP K
Sbjct: 194 LEKTIRIP----RSLSVKAASVLKGFLNKNPADRLGCHRESAFMDIVNHPFFK 340
>18996
Length = 491
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 142 IHRDIKPANIMLSNGIAKISDFGFSRVVEKDDPAL-LSRLGSPL-YMTPQILDGVPFNFK 199
IHRD+ NI++ KISDFG ++ D +S+ P+ + +P+ ++ F+
Sbjct: 2 IHRDLAARNILVDRSCVKISDFGLAQFANADGYYYGISQRDIPIKWYSPEAIETCKFSSY 181
Query: 200 CDVWSVGVVFFEML 213
DVWS GV FEM
Sbjct: 182 SDVWSYGVTLFEMF 223
>32000
Length = 644
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 27/146 (18%)
Frame = -1
Query: 159 KISDFGFSRVVEKDDPALLSRLGSPLYMTPQILDGVPF-NFKCDVWSVGVVFFEMLYGTT 217
KI+DFG +RV + + Y P+IL G F + D+WS+G +F EM+
Sbjct: 569 KIADFGLARVFGLPVRTYTHEVITLWYRAPEILLGCRFYSVPVDIWSLGCIFVEMMTRRA 390
Query: 218 PWIGDSQV---------------KLLQNIKSIP---LKFPENPIR--------SKEVKDL 251
+ GDS++ K+ + +P FP+ P++ SK DL
Sbjct: 389 LFPGDSEIDQLYRIFRTLGTPDEKVWPGVSKLPDYKPTFPKWPLKNLETVVSLSKVGLDL 210
Query: 252 LRGMLKVKEEERMSWEEIFNHPLIKD 277
L+ ML R+S HP D
Sbjct: 209 LKRMLTYNPNRRISARSAMRHPYFND 132
>20152
Length = 445
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Frame = +1
Query: 188 PQILDGVPFNFKC-DVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKSIPLKFPENPIRSK 246
P+IL G ++ DVWS+GV+ + ++ G P+ + + L I + P P S
Sbjct: 1 PEILLGDSYDAPAVDVWSLGVILYMLVVGEAPFQEANDSETLTMIMDCRYQIP--PHISH 174
Query: 247 EVKDLLRGMLKVKEEERMSWEEIFNHPLIKDYT-TPALAKEPAPNKDDLEQSVSLNDNYI 305
+ +DL+ ML+ + +R S I HP + D TP A P K+ + + + Y+
Sbjct: 175 KCQDLIEKMLQREPVDRASLPHILAHPWLNDGDLTPTTAYLPLITKEMISEE---DQTYV 345
Query: 306 KKNLVAGYLTNPDTV 320
+ +V G + + + +
Sbjct: 346 VQKMVEGKIASREEI 390
>08294
Length = 1849
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Frame = +2
Query: 76 SSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYL-------KKKEGKR---LSEPEALIF 125
+P IV V R + ++ EYC GDLK++L + G R L+ + L
Sbjct: 881 GAPNIVHFMGVCREAEPHFLITEYCDWGDLKQFLLATRNDNGRGRGTRVPALALSQKLGM 1060
Query: 126 FRHIVEGFKELQKHKIIHRDIKPANIMLSNGIA-KISDFGFSRVVEKDDPALLSRLGSPL 184
+ + G + L ++H D+ N++L++ + K++ S V + L + PL
Sbjct: 1061 GQQVAAGMEALSNQGLVHGDLAARNVLLTSRMQLKVARPALSGDVYASEYYPLHQRLVPL 1240
Query: 185 -YMTPQILDGVPFNFKCDVWSVGVVFFEML 213
++ P+ + DVW+ GV +E+L
Sbjct: 1241 RWLPPEGVLEDSATTCGDVWAFGVFLWEVL 1330
>37602
Length = 804
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = -1
Query: 81 VSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVEGFKELQKHK 140
V +D L++ +EYC G +++ + G L+EP+ R ++G L +
Sbjct: 330 VGYFDSYLRREKLWIAMEYCGGGSMQD-IYHVTGP-LTEPQIAFVCRETLKGLHYLHRRG 157
Query: 141 IIHRDIKPANIMLS-NGIAKISDF 163
+HRDIK ANI+L+ G K++DF
Sbjct: 156 KMHRDIKGANILLTEEGDVKLADF 85
>00486
Length = 797
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%)
Frame = -2
Query: 181 GSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKSIPLKFPE 240
G+ YM P+IL D WS+G + ++ML G+ P+ +++ K + I L P
Sbjct: 772 GTIEYMAPEILTRTGHGKAVDWWSLGALMYDMLTGSPPFTAENRKKTIDKILKGKLNLP- 596
Query: 241 NPIRSKEVKDLLRGMLKVKEEERMSWEEIFNHPLIKDY 278
P + E + L++ +L+ ER+ + P IKD+
Sbjct: 595 -PYLTNEARGLIKKLLRKNPAERLGGGHDDSGP-IKDH 488
>00715
Length = 1788
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Frame = +1
Query: 72 LQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEALIFFRHIVE 131
L+ V+ I+ + R + ++ +EY +L+ L + + + L +
Sbjct: 97 LRHVNVVSILGATSLHRFEDGAWLAMEYVGPLNLQTILNDHQ-QDIDSSMRLSLALQMAR 273
Query: 132 GFKELQKHKIIHRDIKPANIMLSNGI-AKISDFGFSRVVEKDDPALLSR----------- 179
G L I+H D+KPAN +L+ + +I+DFG + + R
Sbjct: 274 GLHYLHSINIVHLDLKPANCLLTRDLKLRIADFGCCHQLTPTGLDMGEREGGMAGNELEL 453
Query: 180 -----------LGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWIG 221
G+ Y P++L G+ + + DV+S+G+ ++M P+ G
Sbjct: 454 TPVQGAWKNELAGTLAYRAPELLKGLQPSVRSDVYSLGITLWQMCTRQGPYEG 612
>03508
Length = 1463
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 10/220 (4%)
Frame = +1
Query: 9 WTNKKVDHFVVVNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKRE 68
W N+ D + +V LG+G + +V+ V + K V P+K ++ L
Sbjct: 577 WGNQ--DDYQIVRK-LGRGKYSEVFEAINVTNNEKCVIKILKPVKKKKIKREIKILENLR 747
Query: 69 -----IAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEAL 123
I +L V P V+RT + E+ ++ D K+ + ++ +
Sbjct: 748 GGTNVITLLAIVKDP-------VSRTPA---LIFEHVNNTDFKQLYQT-----FTDYDIR 882
Query: 124 IFFRHIVEGFKELQKHKIIHRDIKPANIMLS--NGIAKISDFGFSRVVEKDDPALLS--R 179
+ +++ I+HRD+KP N+M+ N ++ D+G + P + R
Sbjct: 883 FYLYELMKALDFCHSMGIMHRDVKPHNVMIDHENKKLRLIDWGLAEFYH---PGMEYNVR 1053
Query: 180 LGSPLYMTPQ-ILDGVPFNFKCDVWSVGVVFFEMLYGTTP 218
+ S + P+ +LD +++ D+WS+G +F M++ P
Sbjct: 1054VASRYFKGPELLLDYQMYDYSLDMWSLGCMFASMIFRKEP 1173
>20640
Length = 1492
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Frame = +1
Query: 142 IHRDIKPANIMLSNG-IAKISDFGFSRVVEKDDPALLSRLGS-PLYMTPQILDGVPFN-- 197
+HRD+ N ++ + + KISDFG +R V D S + P+ P L+ + +N
Sbjct: 10 VHRDLATRNCLVGHDLVVKISDFGLARSVHSVDYYRGSEHDAIPIRWMP--LEAILYNKF 183
Query: 198 -FKCDVWSVGVVFFEML-YGTTPWIGDSQVKLLQNIK 232
+ DVWS GVV +E+ + P+ G + ++++ +K
Sbjct: 184 STQSDVWSFGVVLWEIFAFALQPYYGLTHEEVVRFVK 294
>37063
Length = 455
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 14/78 (17%)
Frame = -2
Query: 146 IKPANIM---LSNGIA-KISDFGFSRVVEKD-----DPALLSRLGSPLYMTPQILD---G 193
+KP NI+ L + KI DF + + D P LL+ +GS YM P+++D G
Sbjct: 454 LKPENILCEHLDEVVPLKICDFDLASGINCDGDGTKTPELLTPVGSAEYMAPEVVDAWVG 275
Query: 194 VPFNF--KCDVWSVGVVF 209
F++ +CD+WS+G++
Sbjct: 274 ESFSYDKRCDMWSLGIIL 221
>17932
Length = 597
Score = 32.0 bits (71), Expect(2) = 0.001, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 203 WSVGVVFFEMLYGTTPWIGD--SQVKLLQNI 231
WS+GV +EML+G TP+ D S V NI
Sbjct: 593 WSLGVCAYEMLFGCTPFTDDDGSMVATYNNI 501
Score = 28.5 bits (62), Expect(2) = 0.001, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 237 KFPENPIRSKEVKDLLRGMLKVKEEERMSWEEIFNHPLIK 276
+ P + SKE +DL+ +L + R+ W E+ HP K
Sbjct: 481 QVPPHSSVSKEARDLISQLLS-DGKSRLGWPELQQHPFFK 365
>12672
Length = 773
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +3
Query: 132 GFKELQKHKIIHRDIKPANIML-SNGIAKISDFGFSRVVEKDDPALLSR----LGSPLYM 186
G + L + +HRDIK ANI+L S AK+ DF + + +G+ Y+
Sbjct: 27 GIQYLNDNGHVHRDIKTANILLDSEYTAKVGDFATVVSAPSGEGKTVQNASVVIGTAAYL 206
Query: 187 TPQILDGVPFNFKCDVWSVGVVFFEMLYG 215
P+ + + K D +S GVV E++ G
Sbjct: 207 APEAIH-FDVSTKLDSYSFGVVLLEVITG 290
>22005
Length = 873
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 46/194 (23%)
Frame = +1
Query: 66 KREIAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKK-------------- 111
+RE +++ P IV L V + + E+ GDL ++L+
Sbjct: 154 EREASLMADFDHPNIVKLLGVCAIGKPMCLLFEFMSKGDLNDFLRLCSPENYNLPVSRSQ 333
Query: 112 ------KEGKR----------------------LSEPEALIFFRHIVEGFKELQKHKIIH 143
++G R L + L + I G L + +H
Sbjct: 334 NLVVDLEDGLRVEVEAEECEKDTQSEDRDCSGMLXTKDQLYISQQISAGMAYLAQKDYVH 513
Query: 144 RDIKPANIMLSNGIAKISDFGFSRVVEKDDPALLSRLGS-PLYMTPQILDGV---PFNFK 199
RD+ + + ISDFG +R V D S + P+ P L+ + F+ +
Sbjct: 514 RDLATRTVXSRTT*S*ISDFGLARSVHSVDYYRGSEQDAIPIRWMP--LEAILYSKFSTQ 687
Query: 200 CDVWSVGVVFFEML 213
DVWS GVV +E+L
Sbjct: 688 SDVWSFGVVLWEIL 729
>28157
Length = 400
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Frame = +3
Query: 48 KAIPIKSISDSGKMLELIKREIAILQKVSSPFIVSLYDVARTSNNLYMFLEYCHDGDLKE 107
K + +K I +S + + +E+ L +VS P IV LY R + + + +EY G L
Sbjct: 3 KDVAVKRI-ESEQEKKSFMQELKQLSRVSHPNIVCLYGACR-DHPVCLVMEYAEGGSLYN 176
Query: 108 YLKKKEGK-RLSEPEALIFFRHIVEGFKELQKHK---IIHRDIKPANIML--SNGIAKIS 161
L + + + A+ + G + L K +IHRD+KP N++L KI
Sbjct: 177 VLHGSGPQPQYTAAHAMNWLLQCALGVEYLHGMKPKALIHRDLKPPNLLLIQCGTKLKIC 356
Query: 162 DFG 164
DFG
Sbjct: 357 DFG 365
>17722
Length = 680
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Frame = -3
Query: 201 DVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKSIPLKFPENPIRSKEVKDLLRGMLKVKE 260
D W GVV +EM+ G P+ L + I +KFP N S+E K LL G+L
Sbjct: 675 DWWGTGVVMYEMMCGRLPFYNRDHDVLFELILLQNVKFPRN--LSEEAKTLLSGLLAKNP 502
Query: 261 EERMSWE-----EIFNHPLIK--DYTTPALAKEPAPNKDDLEQS 297
+ R+ EI HP + ++ A K P K D++ S
Sbjct: 501 KRRLGGSEADVTEIKTHPFFQCINWDDLAAKKITPPWKPDVKSS 370
>07940
Length = 1336
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Frame = -3
Query: 18 VVVNNVLGKGAFGKVYRGFCV---EDENKLVAAKAIPIKSISDSGKMLELIKREIAILQK 74
+V+ + LG+GAFG V +G + +D N + A + +K + +M++LI RE+ +++
Sbjct: 836 LVLGDRLGEGAFGLVMKGEAMGIFKDNNSVTVAVKM-LKEDATDREMMDLI-REMEMMKV 663
Query: 75 VS-SPFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLK 110
+ I++L LY+ +E+ G+L+++LK
Sbjct: 662 IGKHKNIINLLGCCTQRGALYVIVEFAPHGNLRDFLK 552
>26156
Length = 479
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = -1
Query: 23 VLGKGAFGKVYRGFCVEDE-NKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSS-PFI 80
V+G+G++ KV + VE + K + A + K + + + ++ ++ E + + ++ PF+
Sbjct: 368 VIGRGSYAKVLQ---VEHKRTKRIYAMKVIKKELVNDDEDIDWVQTEKHVFETATNYPFL 198
Query: 81 VSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEA 122
V L+ ++ + L+ +E+ + GDL +++++ +RL E A
Sbjct: 197 VGLHSCFQSESRLFFVIEFVNGGDLMFHMQRQ--RRLPEEHA 78
>16708
Length = 1397
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Frame = -1
Query: 18 VVVNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSS 77
V + VLGKG FGKVY + K +I D + L I+ + Q +
Sbjct: 1397 VAILQVLGKGVFGKVYEARLLSTHEKAALKTSILCHHSLDEVEALGRIEGGFYLAQMFGA 1218
Query: 78 PFIVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGK-RLSEPEALIFFR-HIVEGFKE 135
V+ + N L F E ++ + K KE R S P + V +
Sbjct: 1217 --WVTCLPFPKM-NILLHFYEMGPLCNVYAHYKNKEMPIRWSNPAMVCCIAGQXVCALEH 1047
Query: 136 LQKHKIIHRDIKPANIML-SNGIAKISDFGFSRV 168
+ + ++H D+K N+++ ++G K++D+G +++
Sbjct: 1046 IHELGVVHMDVKADNVLVDAHGNCKLTDYGIAQL 945
>18401
Length = 463
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = -3
Query: 185 YMTPQILDGVPFNFKCDVWSVGVVFFEMLYGTTPWI---GDSQVKLLQNI-KSIPLKFPE 240
Y P+++ + ++ CDVWSVG + FE+ G T + + +++ I S+P + +
Sbjct: 434 YRAPEVILELGWSHPCDVWSVGCIMFELYTGYTLFQTHDNKEHLAMMERILGSLPYRMAK 255
Query: 241 NPIRSKEVKDLLRGMLKVKEEERMS 265
++K+ K G L V E M+
Sbjct: 254 ---KTKKQKYFHHGRLDVPERSSMA 189
>31120
Length = 439
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 189 QILDGVPFNFK-CDVWSVGVVFFEMLYGTTPWIGDSQVKLLQNIKSIPLKF 238
+++ GVP++ K D WS+GV+ F ML G P+ + KLL++ +S F
Sbjct: 1 EVVCGVPYDPKMADAWSLGVILFIMLNGKMPFDDSNLNKLLEDQRSKKYSF 153
>17516
Length = 453
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -3
Query: 181 GSPLYMTPQI-LDGVPFNFKCDVWSVGVVFFEMLYG 215
G+P+YM P++ L ++ K DV+S+ ++ +E+ YG
Sbjct: 433 GTPVYMAPEVLLQKGQYDMKADVYSLAIILWELWYG 326
>00394
Length = 548
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Frame = -2
Query: 6 EKSWTNKKVDHFVVVNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELI 65
EK+ + + F+ + +G+G+F VY+G D VA ++ + +
Sbjct: 328 EKAIAHSPDNRFLKFDKEIGRGSFKTVYKGL---DTELGVAVAWCELQDKKWNKAERQRF 158
Query: 66 KREIAILQKVSSPFIVSLYDVARTSNN-----LYMFLEYCHDGDLKEYLKK 111
K E +L+++ P IV +D N+ + + E G LK YLK+
Sbjct: 157 KEEAEMLKELQHPNIVRFFDYWEEHNHRNRKVIILVTELMTSGTLKTYLKR 5
>31789
Length = 676
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Frame = +2
Query: 5 EEKSWTNKKVDHFVVVNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLEL 64
EEK+ + + F+ + +G+G+F VY+G D VA ++ + +
Sbjct: 287 EEKAVASSPDNRFLKFDVEIGRGSFKTVYKGL---DTELGVAVAWCELQDKKWNKTERQR 457
Query: 65 IKREIAILQKVSSPFIVSLYDVARTSNN-----LYMFLEYCHDGDLKEYLKK 111
K E +L+++ P IV +D N+ + + E G LK YLK+
Sbjct: 458 FKEEAEMLKELQHPNIVRFFDYWEEHNHRNRKVIILVTELMTSGTLKTYLKR 613
>23319
Length = 2235
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 31/118 (26%)
Frame = +3
Query: 201 DVWSVGVVFFEMLYGTTP-------------------------WIGDSQVKLLQNIKSIP 235
D+WS G +F E+ P W G +Q L N + P
Sbjct: 42 DMWSAGCIFAELANAGRPLFPGNDDDDQLKRIFKLLGTPTEDQWPGMTQ---LPNYRMFP 212
Query: 236 LKFPEN------PIRSKEVKDLLRGMLKVKEEERMSWEEIFNHPLIKDYTTPALAKEP 287
+ P + + +DLL+ +L +RMS +E HP D P L ++P
Sbjct: 213 MYHVTTTWQQVVPKLNSKGRDLLQCLLVCCPSDRMSADEALQHPYFADL--PPLVRQP 380
>11404
Length = 563
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Frame = +1
Query: 20 VNNVLGKGAFGKVYRGFCVEDENKLVAAKAIPIKSISDSGKMLELIKREIAILQKVSSPF 79
+++++GKG+FG+V + + D + + IK I + L + E+ +L+ ++
Sbjct: 151 IDSLIGKGSFGQVVKAYDHTDNEQ------VAIKIIKNKKPFLNQAQIEVKLLEMMNRHD 312
Query: 80 IVSLYDVARTSNNLYMFLEYCHDGDLKEY-----LKKKEGKRLSEPEALIFFRHIVEG-- 132
+ Y + R + C +L Y L+ + +S F + +
Sbjct: 313 TDNKYYIVRLKRHFMFRSHLCLVFELLSYNLYDLLRNTNFRGVSLNLTRKFAQQLCTALL 492
Query: 133 FKELQKHKIIHRDIKPANIMLSN 155
F + IIH D+KP NI+L N
Sbjct: 493 FLATPEMSIIHCDLKPENILLCN 561
>13078
Length = 773
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 200 CDVWSVGVVFFEMLYGTT 217
CDVWS+G + FE+ G T
Sbjct: 734 CDVWSIGCIMFELYTGYT 681
>31489
Length = 329
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 117 LSEPEALIFFRHIVEGFKELQKHKIIHRDIKPANIM 152
L+E F I+ G K + ++HRD+KP+N++
Sbjct: 156 LTEEHIRYFLYQILRGLKYIHSANVVHRDLKPSNLL 263
>32957
Length = 645
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 165 FSRVVEKDDPALLSRLGSPLYMTPQILDGVPFNFKCDVWSVGVVFFEML 213
F+ VEK + G+ YM P++ + + + D W +G++ E+L
Sbjct: 3 FALCVEKSGGRTRTFCGTREYMAPEVHERKEYGKEVDWWGLGILLHELL 149
>29360
Length = 363
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Frame = +3
Query: 68 EIAILQKVSSPF-----IVSLYDVARTSNNLYMFLEYCHDGDLKEYLKKKEGKRLSEPEA 122
E++ILQ++S V ++ + N+ + E + +L ++LK+ + + L
Sbjct: 90 EVSILQRLSQESADDYNFVRAFECFQHKNHTCLVFEML-EQNLYDFLKQNKFQPLPLKYI 266
Query: 123 LIFFRHIVEGFKELQKHKIIHRDIKPANIML 153
+ ++ ++L++ +IH D+KP NIML
Sbjct: 267 RPITQQVLTALRKLKQLGLIHADLKPENIML 359
>01106
Length = 878
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 124 IFFRHIVEGFKELQ-KHKIIHRDIKPANIMLS 154
+ R ++EG + K +IIH DIKP NI++
Sbjct: 657 LIIRQVLEGLSYMHAKCRIIHTDIKPENILIC 752
>21800
Length = 855
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 124 IFFRHIVEGFKELQ-KHKIIHRDIKPANIMLS 154
+ R ++EG L K IIH DIKP NI++
Sbjct: 644 LIIRQVLEGLNYLHAKCNIIHTDIKPENILIC 739
>03294
Length = 1684
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 201 DVWSVGVVFFEMLYGTTPWIGDSQVKLLQNI 231
DVWS+G +F +ML T + GDS++ L I
Sbjct: 1669 DVWSIGTIFADMLIRTPIFKGDSEIDQLFKI 1577
>26009
Length = 886
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 121 EALIFFRHIVEGFKELQKHKIIHRDIKPANIML 153
EA + +V + +++HRDIKP N+++
Sbjct: 714 EAKSVMKQLVSALDFMHSKQLVHRDIKPENVLI 812
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00686100__3732.m00069HMGL-like_family_protein
(322 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03725 105 2e-23
>03725
Length = 1655
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 71/102 (69%)
Frame = +1
Query: 214 PEKTDKMLTAVKKQVPVEKLAAHFHDTFDKAISNILVALEHGVSVVDSSIAGLGGCPYAK 273
P +++ V + VP++ LA H HDT+ +A++NIL AL+ G+SVVDSS AGLGGCPYAK
Sbjct: 10 PGGMRTLISVVSQSVPIDCLAVHCHDTYGQALANILAALQLGISVVDSSAAGLGGCPYAK 189
Query: 274 KQAGNVCTENVVYSLQQLGIETGIDLLKLKQIGSDITTKLKR 315
+GNV TE+VV L L I+TG+++ KL + G I+ + R
Sbjct: 190 GASGNVSTEDVVXMLNGLNIQTGVNIHKLIEAGQYISNAIGR 315
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00194370__16.m00377cation_channel_family_protein
(2872 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
18861 108 3e-23
20043 36 0.28
06167 32 4.9
02626 31 6.8
>18861
Length = 443
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 76/148 (51%)
Frame = -2
Query: 2665 EKGDQNTCTTLFQCYLYTLNQGLLHAAGIGEAIAKPSYEDPSTFIFRYFFDLSXXXXXXX 2724
E+ Q C +L C + TLNQGL + GIG+ + KPS +P F R +DL
Sbjct: 442 EEDKQRACDSLIMCIVTTLNQGLRNGGGIGDVLRKPSSREP-LFFARVIYDLLFFFIVII 266
Query: 2725 XXXXXXXXXXXDTFAQLRXXXXXXXXXXNNVCFICGLSRNEFDKVPGGFTIHIEKQHQLW 2784
DTFA LR N CFICGL R++FD F HI+ +H +W
Sbjct: 265 IVLNLIFGVIIDTFADLRSEKQQKDEILRNSCFICGLERDKFDNRSVSFEEHIKSEHNMW 86
Query: 2785 YYVYYIYHLKCKDSTEYNGVESYIQDLL 2812
+Y+++I + KDSTE+ G ESY+ ++
Sbjct: 85 HYLFFIVLVNVKDSTEFTGPESYVHSMI 2
>20043
Length = 447
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +1
Query: 2296 DIYLLISTLSDKDENVKQLLENPPDEYVS--ALKFFKYNTASIEVV-FKNNLIRVYFPIQ 2352
+I++L LS ++ + +LL+ + AL+F+ +TA IE+V + R+ FPI
Sbjct: 235 NIFILAHQLSQHNKILAELLKPSGTDLYGDQALEFYTRHTAQIEIVRLDRTMERIVFPIP 414
Query: 2353 PICRLLSKNSR 2363
IC L++ ++
Sbjct: 415 EICEFLTQETK 447
>06167
Length = 1470
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 807 VQSP-FKENYGKFMLLSKFQEMSTESQENLDKFEYFSEMI 845
V P FKE Y +L+SK + + T+S +N+D+FE E++
Sbjct: 1099 VSEPTFKEGYLCMLLISKNKSLCTDSTKNMDQFERKVELV 980
>02626
Length = 2319
Score = 31.2 bits (69), Expect = 6.8, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +2
Query: 2636 AVLIYIYSIFAFYFSDQTYKTTEVYGLDGEKGDQNTCTTLFQCYLYTL 2683
+LI +Y FA Y QTY VYG GE GD C L C++ L
Sbjct: 1991 GILINLY--FAVYTYSQTYFNFPVYGGMGE-GDVLQCFALCSCFMQAL 2125
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00624710__3814.m00939EF_hand_family_protein
(964 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07678 103 5e-22
00167 95 1e-19
26849 55 1e-16
12671 61 2e-09
17977 44 4e-04
02929 36 0.058
14945 33 0.73
22063 32 0.89
28023 32 0.95
05230 32 1.7
18171 31 2.1
17484 30 3.2
01637 30 4.4
11270 30 4.8
>07678
Length = 958
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 105/188 (55%), Gaps = 1/188 (0%)
Frame = +1
Query: 144 EKVRQTLSLKGASGLLSFALMLKVLDNTGRKTININQLESALSDFKI-QEDPAVIEKVFY 202
EK+R +GA+G+ A K++D+ G ++++ + + +++F + Q + VI+++F
Sbjct: 274 EKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEMFT 453
Query: 203 YLDKHNYGSINYEDFLNKLKVPLNPFRKSLITQAYTFLDRSNFGVINTAVVKSSYNPSNH 262
DK G+I++++FL KL+ P++ RK LI +A+ LD++ GV+ +K YN + H
Sbjct: 454 CFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYNVTKH 633
Query: 263 PDAVNGFRGEEDIKLEFRSSFESYLDLRDIHDDKMTFEDFVDYYTFLNHLWEGDESFKQY 322
P +NG EE I F SF+S D D K+T E+F +YY ++ + D F
Sbjct: 634 PKYLNGEWTEERILRIFLDSFDSPND----KDGKITKEEFFNYYVGVSASVDNDAYFSLM 801
Query: 323 ITNIWKPD 330
+ W+ D
Sbjct: 802 MKQAWRLD 825
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 3/189 (1%)
Frame = +1
Query: 493 KNRLA--SKGPRGFLTLERQLKTTDVDNDGRLNLVEFKKSISNFKIEVTETEVTI-IFNL 549
K RLA ++G G L R+ K D D + L+ EFKK I+ F + E +V +F
Sbjct: 277 KLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEMFTC 456
Query: 550 FDPQETGQISLFEFLNSLKGQMNQFRFNLVNEVFNKIDQYGENVITFADIQREFYPRAHP 609
FD Z+G I EFL L+ M+Q R +L+ F K+D+ G+ V+T D++ + HP
Sbjct: 457 FDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYNVTKHP 636
Query: 610 DVKTAKRHEDDIAQELFSTLELHNKLYSDVPSNEISREQFIDYYNNMSASIQDDQLFESI 669
+ E+ I + + + N +I++E+F +YY +SAS+ +D F +
Sbjct: 637 KYLNGEWTEERILRIFLDSFDSPND-----KDGKITKEEFFNYYVGVSASVDNDAYFSLM 801
Query: 670 LVNTYRLSQ 678
+ +RL Q
Sbjct: 802 MKQAWRLDQ 828
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 5/193 (2%)
Frame = +1
Query: 774 NPLNEFRSKVAQRGVRGFIKLYQKFRNVMRDNQSVISYQSFVQALNELRL-QIENP--QD 830
+P+ + R RG G L +KF+ + D + ++ F + + E L Q E Q+
Sbjct: 265 DPVEKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQE 444
Query: 831 IFNQFER--QGSLDLEDLFKALKGKIAEHRQQLIVHSFTGMDRTRCGEVPLELIKQTYDS 888
+F F++ G++D ++ L+ +++ R+ LI +F +D+T G V +E +K Y+
Sbjct: 445 MFTCFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYNV 624
Query: 889 RGHPNVKLGKVSDEEALQDFIDSFELHMQTFNPNNLNQGIVHFNEFFEFYHITSQCIEDD 948
HP G+ ++E L+ F+DSF+ +PN+ G + EFF +Y S +++D
Sbjct: 625 TKHPKYLNGEWTEERILRIFLDSFD------SPND-KDGKITKEEFFNYYVGVSASVDND 783
Query: 949 QYFEIMMRNCWHL 961
YF +MM+ W L
Sbjct: 784 AYFSLMMKQAWRL 822
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 15 KLDQRSSSKSGVEATLIKSFKFFDLQNNGLLSKNEFFRGLAKVGVVP-EIDETDKLFNYF 73
+L + +G++ L + FK D N L EF +G+ + G+ E D ++F F
Sbjct: 283 RLACLARGAAGIKG-LARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEMFTCF 459
Query: 74 DENKTGKIDYKEF 86
D++++G ID+ EF
Sbjct: 460 DKDZSGTIDFDEF 498
>00167
Length = 2176
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 105/196 (53%), Gaps = 6/196 (3%)
Frame = +3
Query: 774 NPLNEFRSKVAQRGVRGFIKLYQKFRNVMRDNQS-VISYQSFVQALNELR---LQIENPQ 829
P+ F+ Q+G + +KFR +M DN+ +S F+ E R + E
Sbjct: 675 GPVERFKCYALQQGCGAIKTIGRKFR-IMDDNRDRKLSVDEFIVGCRECRIAKMTSEELN 851
Query: 830 DIFNQFERQGS--LDLEDLFKALKGKIAEHRQQLIVHSFTGMDRTRCGEVPLELIKQTYD 887
++F +F++ G+ LD E+ AL+ K+ E R++L+ +F MD+T G + + + TYD
Sbjct: 852 EVFRRFDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYD 1031
Query: 888 SRGHPNVKLGKVSDEEALQDFIDSFELHMQTFNPNNLNQGIVHFNEFFEFYHITSQCIED 947
R HP + G+++ ++ Q+F+D+F + + + G++ E+ ++Y S I++
Sbjct: 1032VRSHPRYQNGELTKKQVYQEFLDNFVV-------GDNDDGVITMAEWIDYYSGVSASIDE 1190
Query: 948 DQYFEIMMRNCWHLKT 963
D YF ++M N W +K+
Sbjct: 1191DVYFGLVMYNSWGVKS 1238
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Frame = +3
Query: 491 RIKNRLASKGPRGFLTLERQLKTTDVDNDGRLNLVEFKKSISNFKI-EVTETEVTIIFNL 549
R K +G T+ R+ + D + D +L++ EF +I ++T E+ +F
Sbjct: 687 RFKCYALQQGCGAIKTIGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVFRR 866
Query: 550 FDPQETGQISLFEFLNSLKGQMNQFRFNLVNEVFNKIDQYGENVITFADIQREFYPRAHP 609
FD TG + EFL +L+ +MN+FR LV + F K+D+ G+ +IT D+ + R+HP
Sbjct: 867 FDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYDVRSHP 1046
Query: 610 DVKTAKRHEDDIAQELFSTLELHNKLYSDVPSNEISREQFIDYYNNMSASIQDDQLFESI 669
+ + + + QE L N + D I+ ++IDYY+ +SASI +D F +
Sbjct: 1047RYQNGELTKKQVYQEF-----LDNFVVGDNDDGVITMAEWIDYYSGVSASIDEDVYFGLV 1211
Query: 670 LVNTY 674
+ N++
Sbjct: 1212MYNSW 1226
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Frame = +3
Query: 153 KGASGLLSFALMLKVLDNTGRKTININQLESALSDFKIQEDPAV-IEKVFYYLDKHNYGS 211
+G + + +++D+ + +++++ + +I + + + +VF DK G+
Sbjct: 711 QGCGAIKTIGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVFRRFDKDGTGT 890
Query: 212 INYEDFLNKLKVPLNPFRKSLITQAYTFLDRSNFGVINTAVVKSSYNPSNHPDAVNGFRG 271
+++E+FL L+ +N FR+ L+ +A+ +D++ G+I + +Y+ +HP NG
Sbjct: 891 LDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYDVRSHPRYQNGELT 1070
Query: 272 EEDIKLEFRSSFESYLDLRDIHDDKMTFEDFVDYYTFLNHLWEGDESFKQYITNIW 327
++ + EF +F + D D +T +++DYY+ ++ + D F + N W
Sbjct: 1071KKQVYQEFLDNFV----VGDNDDGVITMAEWIDYYSGVSASIDEDVYFGLVMYNSW 1226
>26849
Length = 649
Score = 54.7 bits (130), Expect(2) = 1e-16, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%)
Frame = +3
Query: 567 LKGQMNQFRFNLVNEVFNKIDQYGENVITFADIQREFYPRAHPDVKTAKRHEDDIAQELF 626
L+ M++ R N+++ F+K+D G+ IT D +R + R HP K+ + +D+I E
Sbjct: 354 LRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEFL 533
Query: 627 STLELHNKLYSDVPSNEISREQFIDYYNNMSASIQDDQLFE 667
+ SD P +++E+F + Y ++SASI +D F+
Sbjct: 534 KNFQAG---VSD-PDGVVNKEEFENXYASISASIDNDTYFD 644
Score = 50.8 bits (120), Expect(2) = 1e-16, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Frame = +2
Query: 465 MCSQATSTRFMQENNVSQRQI-----ELILIRIKNRLASKGPRGFLTLERQLKTTDVDND 519
M Q ++ + N+S+R++ + + +++ + S+GP G L L R + D D
Sbjct: 32 MHRQDAYSKGAELENLSRRELANGLEKDSIYKLRLQCLSRGPTGILGLARAFRVMDKDGS 211
Query: 520 GRLNLVEFKKSISNFKIEVTETEVTIIFNLFDPQETGQISLFEFL 564
L+L EFKK I + I++ E ++ +F FD G I++ EFL
Sbjct: 212 KVLSLEEFKKGILDMHIDINEADIEDMFYRFDNDGNGTINMTEFL 346
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%)
Frame = +3
Query: 850 LKGKIAEHRQQLIVHSFTGMDRTRCGEVPLELIKQTYDSRGHPNVKLGKVSDEEALQDFI 909
L+ ++E R +I +F +D G++ + K+ Y R HP K G++SD+E + +F+
Sbjct: 354 LRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEFL 533
Query: 910 DSFELHMQTFNPNNLNQGIVHFNEFFEFYHITSQCIEDDQYFEI 953
+F+ + +P+ G+V+ EF Y S I++D YF++
Sbjct: 534 KNFQAGVS--DPD----GVVNKEEFENXYASISASIDNDTYFDL 647
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +3
Query: 220 KLKVPLNPFRKSLITQAYTFLDRSNFGVINTAVVKSSYNPSNHPDAVNGFRGEEDIKLEF 279
KL+ P++ R ++I +A+ LD + G I K Y+ +HP +G +++I LEF
Sbjct: 351 KLRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEF 530
Query: 280 RSSFES 285
+F++
Sbjct: 531 LKNFQA 548
>12671
Length = 807
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%)
Frame = -2
Query: 509 RQLKTTDVDNDGRLNLVEFKKSISNFKIEVTETEVTIIFNLFDPQETGQISLFEFLNSLK 568
R + D D G L + ++ + F +++ + +F + DP ++ F+ ++
Sbjct: 803 RHYRQLDKDGTGILLQHDLERGLLRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTVL 624
Query: 569 GQMNQFRFNLVNEVFNKIDQYGENVITFADIQREFYPRAHPDVKTAKRHEDDIAQELFST 628
GQMN+ R LV + F+K+D + + I +DI++ F+ P ++ A + F
Sbjct: 623 GQMNENRKGLVRKAFSKVDTHRQGSIHLSDIKK-FFNANCPYRPSSDADSTKSALQCFL- 450
Query: 629 LELHNKLYSDVPSNEISREQFIDYYNNMSASIQDDQLFESILVNTYRL 676
+ + E+S +F +YY +S +Q+DQ F +IL NT+ +
Sbjct: 449 ----DAVRCSAKQEEVSFIEFEEYYEGLSVGLQEDQDFANILRNTWNI 318
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Frame = -2
Query: 168 LDNTGRKTININQLESALSDFKIQEDPAVIEKVFYYLDKHNYGSINYEDFLNKLKVPLNP 227
LD G + + LE L F + P V+E+VF +D ++Y F+ + +N
Sbjct: 788 LDKDGTGILLQHDLERGLLRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTVLGQMNE 609
Query: 228 FRKSLITQAYTFLDRSNFGVINTAVVKSSYNPSNHPDAVNGFRGEEDIKLEFRSSFESYL 287
RK L+ +A++ +D G I+ + +K +N +N P +R D +S+ + +L
Sbjct: 608 NRKGLVRKAFSKVDTHRQGSIHLSDIKKFFN-ANCP-----YRPSSDAD-STKSALQCFL 450
Query: 288 DL--RDIHDDKMTFEDFVDYYTFLNHLWEGDESFKQYITNIW 327
D ++++F +F +YY L+ + D+ F + N W
Sbjct: 449 DAVRCSAKQEEVSFIEFEEYYEGLSVGLQEDQDFANILRNTW 324
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
Frame = -2
Query: 796 QKFRNVMRDNQSVISYQSFVQALNELRLQIENPQDIFNQF------ERQGSLDLEDLFKA 849
+ +R + +D ++ + L LR ++ P ++ Q + + LD +
Sbjct: 803 RHYRQLDKDGTGILLQHDLERGL--LRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRT 630
Query: 850 LKGKIAEHRQQLIVHSFTGMDRTRCGEVPLELIKQTYDSRGHPNVKLGKVSDEEALQDFI 909
+ G++ E+R+ L+ +F+ +D R G + L IK+ +++ S + ALQ F+
Sbjct: 629 VLGQMNENRKGLVRKAFSKVDTHRQGSIHLSDIKKFFNANCPYRPSSDADSTKSALQCFL 450
Query: 910 DSFELHMQTFNPNNLNQGIVHFNEFFEFYHITSQCIEDDQYFEIMMRNCWHL 961
D+ + Q V F EF E+Y S +++DQ F ++RN W++
Sbjct: 449 DAVRCSAK--------QEEVSFIEFEEYYEGLSVGLQEDQDFANILRNTWNI 318
>17977
Length = 445
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +3
Query: 30 LIKSFKFFDLQNNGLLSKNEFFRGLAKVGVVPEIDETDKLFNYFDENKTGKIDYKEFTAF 89
LI++F+F+D G + ++ K V ++ +++F+Y DEN+ G+IDY EF F
Sbjct: 225 LIRAFRFYDKDGKGKIDIDDLREACRKFDVPIDVWLLEQVFDYCDENRDGQIDYLEFANF 404
Query: 90 I 90
+
Sbjct: 405 L 407
>02929
Length = 1353
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 34 FKFFDLQNNGLLSKNEFFRGLAKVGVVPEIDETDKLFNYFDENKTGKIDYKEFT-AFILQ 92
F+ D +G L++ EF G+ + E + +F+ FD K G I+YK+F A
Sbjct: 194 FRRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIFDREKRGLIEYKDFVDALKPD 373
Query: 93 KSESAKSQQSNSQFGQDSQIDNASSVSSKQN-IGY 126
K ++ S+ + QDS A+ S ++ GY
Sbjct: 374 KFRTSSRAMSDDEVIQDSIDQEANGCSCREQFTGY 478
>14945
Length = 1337
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 167 VLDNTGRKTININQLESALSDFKIQEDPAVIEKVFYYLDKHNYGSINYEDFLN 219
+ D G TI+ +L+ A+ + I+K+ +DK G+I++ DFL
Sbjct: 136 LFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLT 294
>22063
Length = 688
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 167 VLDNTGRKTININQLESALSDFKIQEDPAVIEKVFYYLDKHNYGSINYEDFLNKLKVPLN 226
+ D G TI+ +L+ A+ + I+K+ +DK G+I++ DFL + ++
Sbjct: 195 LFDADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTGTIDFNDFLTIMTQKMS 374
Query: 227 PF-RKSLITQAYTFLDRSNFG 246
K I +A+ D G
Sbjct: 375 EKDAKEEILKAFRLFDDDETG 437
>28023
Length = 475
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 65 ETDKLFNYFDENKTGKIDYKEFTAFILQ 92
E D++ +Y D+NK GK+D+ EF F+++
Sbjct: 466 EVDEVIDYIDKNKDGKVDFSEFYKFMVK 383
>05230
Length = 843
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 40/85 (47%)
Frame = -2
Query: 515 DVDNDGRLNLVEFKKSISNFKIEVTETEVTIIFNLFDPQETGQISLFEFLNSLKGQMNQF 574
DV DGRLNL EF + ++ + + ++F+ E ++ + E+++ +
Sbjct: 827 DVLQDGRLNLFEFTRLMTLLGLPNAQEAAKVLFDKQTKVERDRLRMEEYISIMSDASVDM 648
Query: 575 RFNLVNEVFNKIDQYGENVITFADI 599
+ N+ ++F + D G + D+
Sbjct: 647 KTNMWRKLFAQFDTDGSGWASREDV 573
>18171
Length = 1131
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 30 LIKSFKFFDLQNNGLLSKNEFFRGLAKVGVVPEIDETDKLFNYFDENKTGKIDYKEFTAF 89
++++ D G++S L +G +E ++L D+ +TG++DYKEF
Sbjct: 171 MLEALTLLDKDQTGVISTALLRHVLTTLGDQLTSEEVEELIKEADKEETGQVDYKEFIKM 350
Query: 90 IL 91
++
Sbjct: 351 MM 356
>17484
Length = 471
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 165 LKVLDNTGRKTININQLESALSDFKIQEDPAVIEKVFYYLDKHNYGSINYEDF 217
+ D G I+I++L A++ + A +E + +DK G +NYE+F
Sbjct: 253 FRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRDVDKDGDGFVNYEEF 95
>01637
Length = 1204
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 642 NEISREQFIDYYNNMSASIQDDQLFESILVN 672
NE+SR F YN ++ ++ DQ+ ESI+ N
Sbjct: 762 NEVSRHDFASRYNIVACDLEYDQVLESIVGN 670
>11270
Length = 532
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 63 IDETDKLFNYFDENKTGKIDYKEFTAFILQKSESAKSQ 100
+DE K+F+ D NK G ++ KE+ AF + S A ++
Sbjct: 413 VDEDRKVFDAADANKDGSLNSKEYFAFFMPNSSPAGAR 526
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00151810__3700.m00233Elongation_factor_Tu,
_mitochondrial_precursor,_putative
(375 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00709 100 7e-22
15991 89 2e-18
22349 81 6e-16
15617 45 7e-05
14064 32 0.42
18744 29 2.9
>00709
Length = 1076
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 120/264 (45%), Gaps = 45/264 (17%)
Frame = -2
Query: 26 KFQRNKPHLNVGTIGHIDHGKTTLTAAITKICA--DKKLAE-------------FMAYDS 70
K + K H+N+ IGH+D GK+T T + C DK+ E F
Sbjct: 910 KMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 731
Query: 71 IDKAPEEKARGITINTATVEYETETRHYGHVDCPGHIDYVKNMITGAAKMDAGILVCSAT 130
+DK E+ RGITI+ A ++ET + +D PGH D++KNMITG ++ D +L+ ++
Sbjct: 730 LDKLKAERERGITIDIALWKFETTKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVASG 551
Query: 131 DGVMP-------QTREHILLCRQVGVKTIIVFVNKCDMAKDPEIQELVEMEVRELLSKY- 182
G QTREH LL +GVK +I+ VNK D + P E E+++ +S Y
Sbjct: 550 TGEFEAGISKEGQTREHALLAYTLGVKQLIIGVNKMD-STSPAYSETRFNEIQKEVSGYI 374
Query: 183 ----------------EYNGDEAPVIFGSALCALNGTDPEI--GINKI----NTLLDTMD 220
++GD + + G + E G ++ TL D +D
Sbjct: 373 KKIGFNPKAVAFVPISGFHGDNM-IXESEKMGWYKGWEIERKEGTKEVKASGKTLFDALD 197
Query: 221 KQIALPERTVDKPFMMSVEGTYQI 244
I P R KP + ++ Y+I
Sbjct: 196 -SILPPTRPTGKPLRLPLQDVYKI 128
>15991
Length = 1629
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 22/196 (11%)
Frame = -3
Query: 71 IDKAPEEKARGITINTATVEYETETRHYGHVDCPGHIDYVKNMITGAAKMDAGILVCSAT 130
+DK E+ RGITI+ A ++ET+ + +D PGH D++KNMITG ++ D +LV +A
Sbjct: 1498 LDKLKAERERGITIDIALWKFETDKYYVTIIDAPGHRDFIKNMITGTSQADCAVLVVAAG 1319
Query: 131 DGVMP-------QTREHILLCRQVGVKTIIVFVNKCDMAKDP---EIQELVEMEVRELLS 180
G QTREH LL +GVK +IV VNK D + P + E ++ EV +
Sbjct: 1318 KGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDSTEPPYSMDRFEEIKKEVSTYIK 1139
Query: 181 KYEYNGDEAPVIFGSALCALNGTDPEIGI---NKI---------NTLLDTMDKQIALPER 228
K YN + + S N + I KI TL + +D I P R
Sbjct: 1138 KIGYNPNTVAFVPISGWVGDNMMEASTKIVHKWKIERKEGKAEGETLKEALD-AILPPTR 962
Query: 229 TVDKPFMMSVEGTYQI 244
DK + ++ Y+I
Sbjct: 961 PTDKALRLPLQDVYKI 914
>22349
Length = 662
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 24/162 (14%)
Frame = -2
Query: 31 KPHLNVGTIGHIDHGKTT-------LTAAITKICADKKLAE---------FMAYDSIDKA 74
K H+NV IGH+D GK+T LT + K +K E ++++ ++D
Sbjct: 499 KDHINVVFIGHVDAGKSTIGGHLLYLTGMVDKRTLEKYEREAKEKNRETWYLSW-ALDTN 323
Query: 75 PEEKARGITINTATVEYETETRHYGHVDCPGHIDYVKNMITGAAKMDAGILVCSAT---- 130
EE+ +G T+ +ETE +H+ +D PGH +V NMI GA++ D ILV SA
Sbjct: 322 NEEREKGKTVEVGRAFFETELKHFTVLDAPGHKSFVPNMICGASQADLAILVISARRGEF 143
Query: 131 -DGVMPQTREHILL-C--RQVGVKTIIVFVNKCDMAKDPEIQ 168
D + + H+ + C R+ GV+ +IV +NK D DP +
Sbjct: 142 *DWFLSEEARHVSMPCW*RRQGVRHLIVLINKMD---DPTVN 26
>15617
Length = 595
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Frame = -3
Query: 35 NVGTIGHIDHGKTTLTAAITK---ICADKKLAEFMAYDSIDKAPEEKARGITINTATV-- 89
N+ I H+DHGK+TLT ++ I A K E D+ +E+ R ITI + +
Sbjct: 428 NMSVIAHVDHGKSTLTDSLVSKAGIIASAKAGETRFTDT---RKDEQERCITIKSTAISL 258
Query: 90 --------------EYETETRHY--GHVDCPGHIDYVKNMITGAAKMDAGILVCSATDGV 133
+Y+ + + +D PGH+D+ + D ++V GV
Sbjct: 257 YYELKKDDMKYIKQDYDQDNNAFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV 78
Query: 134 MPQT 137
QT
Sbjct: 77 CVQT 66
>14064
Length = 1723
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 101 VDCPGHIDYVKNMITGAAKM--DAGILVCSATDGVMPQTREHI 141
+D GH Y++ I G D +LV SAT G++ T+EH+
Sbjct: 149 IDLAGHHRYLRTTIVGLTGNCPDFAMLVVSATSGIVGMTKEHL 277
>18744
Length = 446
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 266 LSKPGTQESHKKIEANLYILTEQEGG 291
L +PG + + EA +Y+LT+ EGG
Sbjct: 111 LGQPGMLKQYDTFEAQIYVLTKAEGG 188
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00239260__3706.m00094Zinc_finger,_C2H2_type_family_protein
(367 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03990 98 5e-21
15244 98 6e-21
00550 97 1e-20
21065 92 3e-19
31447 91 5e-19
09238 88 4e-18
20954 87 1e-17
11224 86 2e-17
19488 83 2e-16
16657 83 2e-16
00384 83 2e-16
03546 82 2e-16
05406 82 3e-16
07350 81 7e-16
14953 81 8e-16
00075 80 1e-15
01127 80 1e-15
13577 80 2e-15
21725 79 4e-15
34573 78 5e-15
21993 78 6e-15
19781 77 9e-15
04119 77 1e-14
04291 75 5e-14
04346 75 5e-14
16861 73 2e-13
05734 72 3e-13
35102 70 9e-13
26077 70 1e-12
07214 69 3e-12
32689 69 4e-12
18947 67 9e-12
11951 67 1e-11
13883 65 4e-11
10559 65 5e-11
06644 64 7e-11
22587 64 8e-11
04425 64 1e-10
24734 64 1e-10
33756 63 2e-10
33238 62 2e-10
18567 62 3e-10
37309 61 8e-10
33506 60 9e-10
07617 60 1e-09
10938 60 2e-09
07656 59 3e-09
17968 58 6e-09
37460 57 8e-09
31863 57 9e-09
12529 48 1e-08
25672 57 1e-08
22280 57 1e-08
08848 57 2e-08
33739 56 2e-08
04451 56 3e-08
26440 55 3e-08
22834 55 4e-08
20589 55 5e-08
33882 54 8e-08
25021 53 2e-07
13093 52 3e-07
13351 52 5e-07
14345 51 6e-07
01370 51 7e-07
17441 51 7e-07
19355 51 9e-07
03522 50 1e-06
25452 50 1e-06
28650 50 2e-06
13400 50 2e-06
15315 40 2e-06
19822 49 3e-06
08416 49 4e-06
12007 49 4e-06
35283 48 5e-06
12340 47 9e-06
12876 47 1e-05
22797 46 3e-05
02362 45 3e-05
31194 45 7e-05
29119 44 9e-05
11370 44 1e-04
25009 44 1e-04
11340 44 1e-04
27568 44 1e-04
09269 43 2e-04
36716 43 2e-04
38596 42 3e-04
36976 42 4e-04
22953 42 4e-04
26368 41 8e-04
10058 41 8e-04
28878 40 0.001
19915 40 0.001
39790 40 0.001
00667 39 0.002
00084 39 0.002
31942 39 0.003
04747 39 0.003
22374 39 0.004
26669 38 0.006
09754 38 0.006
14267 38 0.007
09962 38 0.008
08448 37 0.009
23439 33 0.011
01482 37 0.014
37973 30 0.017
13232 36 0.020
27161 36 0.031
09647 35 0.033
36072 35 0.039
26444 35 0.040
38480 35 0.040
04586 33 0.048
18722 35 0.053
24817 35 0.064
13523 35 0.065
25277 35 0.071
31657 34 0.078
39690 30 0.17
33137 33 0.18
11258 33 0.20
28755 33 0.24
00541 33 0.24
17208 32 0.30
13298 32 0.35
02081 32 0.35
21822 32 0.49
18615 32 0.50
08977 32 0.52
25980 32 0.54
26976 32 0.55
19993 32 0.57
37570 31 0.71
13308 31 0.75
29906 31 0.91
13815 30 1.1
34997 30 1.1
02245 30 1.5
20246 30 1.7
16393 30 1.8
37392 30 2.2
37933 30 2.2
10565 30 2.2
16004 29 2.5
20037 29 2.6
02333 29 2.7
29530 29 2.7
05883 28 4.3
07228 28 5.1
17354 28 5.5
14097 28 6.4
18303 25 6.4
19857 28 6.5
13520 28 6.7
26048 28 8.2
30743 28 8.5
16200 27 9.6
>03990
Length = 1235
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Frame = -3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
QK +KC + C + FL +S LK H LTH G ++YVC V C K F ++ L+RH+L+HTG
Sbjct: 621 QKSFKC--DVCNQTFLRASNLKAHKLTHTGLRLYVCDV--CAKHFTRSTDLKRHKLIHTG 454
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
E+ F C++C KSF +LK H H GEK + C C K+F ++++L HE SH
Sbjct: 453 EKMFVCDVCNKSFIHSADLKRHKLVHFGEKTFAC--DKCHKKFIRAADLRTHELSH 292
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 29/159 (18%)
Frame = -3
Query: 232 PRTTPKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRF 290
R+T + K T +K + C + C K F+ S+ LK+H L H G K + C + C K+F
Sbjct: 498 TRSTDLKRHKLIHTGEKMFVC--DVCNKSFIHSADLKRHKLVHFGEKTFAC--DKCHKKF 331
Query: 291 VDNSKLRRHQLVHTGERP----------------------------FRCEICGKSFSLDF 322
+ + LR H+L HT RP F C+IC KSF+
Sbjct: 330 IRAADLRTHELSHTDYRPHSCELCNKRFKFKNSLKSHLVLHSGLKLFSCDICSKSFAKAG 151
Query: 323 NLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
LK+H THTGEKP+ C C+K +T+ S L H +H
Sbjct: 150 TLKSHKLTHTGEKPFEC--DVCNKSYTRVSALKRHMLTH 40
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 58/98 (59%)
Frame = -3
Query: 264 SSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFN 323
SS LK+ K ++C V C K F SKL+ HQ +H+G++ F+C++C ++F N
Sbjct: 741 SSTLKEQEKIQTGKRFLCNV--CNKGFTKPSKLKFHQSIHSGQKSFKCDVCNQTFLRASN 568
Query: 324 LKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
LK H THTG + YVC C K FT+S++L H+ H
Sbjct: 567 LKAHKLTHTGLRLYVC--DVCAKHFTRSTDLKRHKLIH 460
Score = 47.4 bits (111), Expect(2) = 3e-09, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = -2
Query: 266 ALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFS 319
L+ H H + Y C V C K F S L+RH+L+HT ++PF C++C K S
Sbjct: 1234 GLRVHKRAHSGQKYACDV--CCKAFTQPSNLKRHKLMHTRDKPFVCDVCSKGLS 1079
Score = 31.6 bits (70), Expect(2) = 3e-09, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 326 THLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+H H+G+KP+VC C+ RF Q S+L H+ H
Sbjct: 1059 SHKLMHSGDKPFVCDV--CNMRFKQISSLKKHQLIH 958
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = -3
Query: 270 HMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHL 328
H L H G K +VC V C RF S L++HQL+H+ + F C++C ++F+ +L+ H
Sbjct: 1056 HKLMHSGDKPFVCDV--CNMRFKQISSLKKHQLIHSDQESFVCKLCNENFTEADSLEVHK 883
Query: 329 RTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
H+ +VC C+ + L H+ SH
Sbjct: 882 LIHSTHGSFVCDV--CNNIXADADALKTHKLSH 790
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = -3
Query: 257 CGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C F S+LKKH L H + +VC++ C + F + L H+L+H+ F C++C
Sbjct: 1011 CNMRFKQISSLKKHQLIHSDQESFVCKL--CNENFTEADSLEVHKLIHSTHGSFVCDVCN 838
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
+ LKTH +H E +V F ++ T SS L EK
Sbjct: 837 NIXADADALKTHKLSHNQE-SFV--FDNSNESLTHSSTLKEQEK 715
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = -2
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
LR H+ H+G++ + C++C K+F+ NLK H HT +KP+VC
Sbjct: 1231 LRVHKRAHSGQK-YACDVCCKAFTQPSNLKRHKLMHTRDKPFVC 1103
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -2
Query: 323 NLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
L+ H R H+G+K Y C C K FTQ SNL H+ H
Sbjct: 1234 GLRVHKRAHSGQK-YACDV--CCKAFTQPSNLKRHKLMH 1127
>15244
Length = 660
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Frame = +3
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F L+KH LTH G K YVC V C K F N L RH+++HTGE+PF C++C
Sbjct: 114 CNKSFAHKDYLRKHKLTHTGQKCYVCDV--CNKGFAQNGHLTRHRMLHTGEKPFVCDVCN 287
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
K F+ + LK H+ THTG+KP+VC C K F Q NL+ H H
Sbjct: 288 KGFAENKTLKNHMFTHTGQKPFVCDM--CSKSFAQKGNLNTHMLIH 419
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +3
Query: 239 KEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLR 297
K K T QK Y C + C K F + L +H + H G K +VC V C K F +N L+
Sbjct: 150 KHKLTHTGQKCYVC--DVCNKGFAQNGHLTRHRMLHTGEKPFVCDV--CNKGFAENKTLK 317
Query: 298 RHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
H HTG++PF C++C KSF+ NL TH+ HT +K YVC
Sbjct: 318 NHMFTHTGQKPFVCDMCSKSFAQKGNLNTHMLIHTSQKSYVC 443
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 286 CGKRFVDNSKLRRHQLVHTG---ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFP 342
C K F L+ H L HTG E P+ C++C KSF+ L+ H THTG+K YVC
Sbjct: 21 CDKSFAWKCNLKNHMLSHTGHIAESPYICDVCNKSFAHKDYLRKHKLTHTGQKCYVCDV- 197
Query: 343 GCDKRFTQSSNLSAHEKSH 361
C+K F Q+ +L+ H H
Sbjct: 198 -CNKGFAQNGHLTRHRMLH 251
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 238 SKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKL 296
++ + T +K + C + C K F ++ LK HM TH G K +VC + C K F L
Sbjct: 231 TRHRMLHTGEKPFVC--DVCNKGFAENKTLKNHMFTHTGQKPFVCDM--CSKSFAQKGNL 398
Query: 297 RRHQLVHTGERPFRCEICGKSF 318
H L+HT ++ + C++C +S
Sbjct: 399 NTHMLIHTSQKSYVCDVCHESL 464
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTG---EKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
F C++C KSF+ NLK H+ +HTG E PY+C C+K F L H+ +H
Sbjct: 6 FTCDMCDKSFAWKCNLKNHMLSHTGHIAESPYICDV--CNKSFAHKDYLRKHKLTH 167
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 290 FVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
F L H+ +H GE+ F C++C KSF++ L+ H +H GE
Sbjct: 461 FTLKRDLNTHKKIHIGEKRFECDVCYKSFAVKNTLRIHKLSHAGE 595
Score = 29.3 bits (64), Expect(2) = 0.023, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 307 RPFRCEICGKSFSLDFNLKTH 327
+P+ C++C K F+L LKTH
Sbjct: 595 KPYVCDVCNKRFTLKCTLKTH 657
Score = 25.8 bits (55), Expect(2) = 0.023, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +2
Query: 266 ALKKHMLTH-----GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE 306
LK+ + TH G K + C V C K F + LR H+L H GE
Sbjct: 464 TLKRDLNTHKKIHIGEKRFECDV--CYKSFAVKNTLRIHKLSHAGE 595
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 313 ICGKSFSLDFNLK----THLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
IC + S +F LK TH + H GEK + C C K F + L H+ SH
Sbjct: 434 ICLRCMS*EFTLKRDLNTHKKIHIGEKRFEC--DVCYKSFAVKNTLRIHKLSH 586
>00550
Length = 1438
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Frame = +3
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F + L+KH LTH G K YVC V C K FV N L RH+++HTGE+PF C++C
Sbjct: 117 CDKSFANKDYLRKHKLTHAGQKCYVCDV--CNKGFVQNGHLTRHRMLHTGEKPFVCDVCN 290
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
K F+ + LK H+ THTG+KP+VC C K F ++L+ H H
Sbjct: 291 KGFAENKTLKNHMFTHTGQKPFVCDV--CSKSFVHKTSLNTHMLIH 422
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = +3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
QK Y C + C K F+ + L +H + H G K +VC V C K F +N L+ H HTG
Sbjct: 177 QKCYVC--DVCNKGFVQNGHLTRHRMLHTGEKPFVCDV--CNKGFAENKTLKNHMFTHTG 344
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKE 365
++PF C++C KSF +L TH+ HT +K YVC C++ FT ++L+ H+K H + E
Sbjct: 345 QKPFVCDVCSKSFVHKTSLNTHMLIHTSQKEYVCDV--CNESFTLKNDLNTHKKIH-IGE 515
Query: 366 KR 367
KR
Sbjct: 516 KR 521
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 27/144 (18%)
Frame = +3
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHGA-KMYVCQV-------------------- 283
T QK + C + C K F+ ++L HML H + K YVC V
Sbjct: 339 TGQKPFVC--DVCSKSFVHKTSLNTHMLIHTSQKEYVCDVCNESFTLKNDLNTHKKIHIG 512
Query: 284 ------EGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPY 337
+ C K F + LR H++ H+GE+P C++CGK FSL LKTH HTG+K +
Sbjct: 513 EKRFECDVCYKSFAVKNTLRIHRVSHSGEKPCVCDVCGKRFSLKCTLKTHTLIHTGQKSF 692
Query: 338 VCKFPGCDKRFTQSSNLSAHEKSH 361
VC CD+ FTQ ++L+AH +H
Sbjct: 693 VCHV--CDRSFTQRNHLNAHILTH 758
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T +K + C + C K F ++ LK HM TH G K +VC V C K FV + L H L+H
Sbjct: 255 TGEKPFVC--DVCNKGFAENKTLKNHMFTHTGQKPFVCDV--CSKSFVHKTSLNTHMLIH 422
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
T ++ + C++C +SF+L +L TH + H GEK + C C K F + L H SH
Sbjct: 423 TSQKEYVCDVCNESFTLKNDLNTHKKIHIGEKRFECDV--CYKSFAVKNTLRIHRVSH 590
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Frame = +3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
+K ++C + C K F + L+ H ++H G K VC V CGKRF L+ H L+HTG
Sbjct: 513 EKRFEC--DVCYKSFAVKNTLRIHRVSHSGEKPCVCDV--CGKRFSLKCTLKTHTLIHTG 680
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
++ F C +C +SF+ +L H+ THT + P+ C C+K F Q L H+ H
Sbjct: 681 QKSFVCHVCDRSFTQRNHLNAHILTHTDQNPFECDV--CNKCFRQKYTLDKHKLIH 842
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Frame = +3
Query: 243 QVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQL 301
+V+ E C + CGK F LK H L H G K +VC V C + F + L H L
Sbjct: 579 RVSHSGEKPCVCDVCGKRFSLKCTLKTHTLIHTGQKSFVCHV--CDRSFTQRNHLNAHIL 752
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
HT + PF C++C K F + L H HT +K VC C+K F H++ H
Sbjct: 753 THTDQNPFECDVCNKCFRQKYTLDKHKLIHTSQKSSVCDV--CNKSFKTRGRFEIHKRIH 926
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +3
Query: 286 CGKRFVDNSKLRRHQLVHTG----ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKF 341
C K F L+ H L HTG E P C++C KSF+ L+ H TH G+K YVC
Sbjct: 21 CDKSFAWKWNLKNHLLGHTGYVVEESPSSCDVCDKSFANKDYLRKHKLTHAGQKCYVCDV 200
Query: 342 PGCDKRFTQSSNLSAHEKSH 361
C+K F Q+ +L+ H H
Sbjct: 201 --CNKGFVQNGHLTRHRMLH 254
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTG----EKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
F C++C KSF+ +NLK HL HTG E P C CDK F L H+ +H
Sbjct: 6 FACDMCDKSFAWKWNLKNHLLGHTGYVVEESPSSCDV--CDKSFANKDYLRKHKLTH 170
>21065
Length = 476
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +2
Query: 255 EDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
+ CGKVF+ LK+HM +H G K Y C EGC F SKL+RH H R F+C
Sbjct: 152 DGCGKVFVRLCRLKQHMRSHTGEKPYKCNFEGCTWAFTTASKLKRHSAKHLNLRKFKCPQ 331
Query: 314 CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAH 357
C KSF +LK HL HTG KP+VC GCD FT S+L H
Sbjct: 332 CDKSFMRPEHLKGHLVIHTGVKPFVCTHEGCDASFTAKSSLYVH 463
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 28/48 (58%)
Frame = +2
Query: 314 CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
CGK F LK H+R+HTGEKPY C F GC FT +S L H H
Sbjct: 158 CGKVFVRLCRLKQHMRSHTGEKPYKCNFEGCTWAFTTASKLKRHSAKH 301
>31447
Length = 624
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = +1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
CGK F S LK H+ TH G + C +E CG F +S L RHQ H+GE+PF+C +C
Sbjct: 4 CGKAFTRSQELKSHLRTHSGHNRFTC-LE-CGASFASSSNLVRHQRSHSGEKPFKCSLCE 177
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
SFS L +H R HTGE+PYVC+ CD F + LS H K+H
Sbjct: 178 SSFSHKGALISHERIHTGERPYVCQL--CDAAFARVDALSRHRKTH 309
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = +1
Query: 313 ICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
ICGK+F+ LK+HLRTH+G + C C F SSNL H++SH
Sbjct: 1 ICGKAFTRSQELKSHLRTHSGHNRFTC--LECGASFASSSNLVRHQRSH 141
>09238
Length = 674
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
QK + C + C K F + +K+HML H A K +VC V C KRF S L+ H L+HTG
Sbjct: 165 QKPFVC--DVCDKTFRRKNDVKRHMLIHTAQKPFVCDV--CDKRFTLESHLKAHALLHTG 332
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
+RPF C++C KSF+ LKTH+ THTGEKP+ C
Sbjct: 333 QRPFGCDVCSKSFARKSYLKTHMLTHTGEKPFEC 434
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 EDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
E C K F+ SA H L H K VC V C K F S L H+L+H ++PF C++
Sbjct: 15 EVCNKSFVRESAFNNHKLIHADPKSLVCDV--CDKTFTTLSNLNNHKLIHADQKPFVCDV 188
Query: 314 CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
C K+F ++K H+ HT +KP+VC CDKRFT S+L AH H
Sbjct: 189 CDKTFRRKNDVKRHMLIHTAQKPFVCDV--CDKRFTLESHLKAHALLH 326
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = +1
Query: 288 KRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTH-------TGEKPYVCK 340
K F H+L+HTGE+PF C+IC K F+ L TH+ TH TG KP VC
Sbjct: 448 KTFCYQKSFTTHKLLHTGEKPFECDICDKRFAQKGTLNTHMLTHAGHDLTQTGRKPVVCD 627
Query: 341 FPGCDKRFTQSSNLSAH 357
C+K F L H
Sbjct: 628 V--CNKSFRHKGYLKTH 672
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T QK + C + C K F S LK H L H G + + C V C K F S L+ H L H
Sbjct: 243 TAQKPFVC--DVCDKRFTLESHLKAHALLHTGQRPFGCDV--CSKSFARKSYLKTHMLTH 410
Query: 304 TGERPFRCEICGKSFSL 320
TGE+PF C++C + L
Sbjct: 411 TGEKPFECDMCRQDVLL 461
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 27/54 (50%)
Frame = +3
Query: 308 PFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
PF CE+C KSF + H H K VC CDK FT SNL+ H+ H
Sbjct: 3 PFHCEVCNKSFVRESAFNNHKLIHADPKSLVCDV--CDKTFTTLSNLNNHKLIH 158
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Frame = +1
Query: 259 KVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH-------TGERPFR 310
K F + H L H G K + C + C KRF L H L H TG +P
Sbjct: 448 KTFCYQKSFTTHKLLHTGEKPFECDI--CDKRFAQKGTLNTHMLTHAGHDLTQTGRKPVV 621
Query: 311 CEICGKSFSLDFNLKTH 327
C++C KSF LKTH
Sbjct: 622 CDVCNKSFRHKGYLKTH 672
>20954
Length = 475
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Frame = +1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F+ + LKKH L H G K ++C V C K F + L+ H+ VHTG++PF C++C
Sbjct: 13 CDKRFVQAGDLKKHKLFHSGEKPFICDV--CEKSFTLSGDLKLHKFVHTGQKPFNCDVCE 186
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
KSF NLK H HTG+KP+VC C K FT ++NL H+ H
Sbjct: 187 KSFRNRSNLKKHKMIHTGQKPFVCDV--CSKSFTHTNNLKRHKLIH 318
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Frame = +1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
+K + C + C K F S LK H H G K + C V C K F + S L++H+++HTG
Sbjct: 73 EKPFIC--DVCEKSFTLSGDLKLHKFVHTGQKPFNCDV--CEKSFRNRSNLKKHKMIHTG 240
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHY 362
++PF C++C KSF+ NLK H HTG K +VC CDKRF Q+ +L+ H+ Y
Sbjct: 241 QKPFVCDVCSKSFTHTNNLKRHKLIHTGHKWFVCDV--CDKRFNQAGHLTRHKTITY 405
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Frame = +1
Query: 280 VCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
VC V C KRFV L++H+L H+GE+PF C++C KSF+L +LK H HTG+KP+ C
Sbjct: 1 VCDV--CDKRFVQAGDLKKHKLFHSGEKPFICDVCEKSFTLSGDLKLHKFVHTGQKPFNC 174
Query: 340 KFPGCDKRFTQSSNLSAHEKSH 361
C+K F SNL H+ H
Sbjct: 175 DV--CEKSFRNRSNLKKHKMIH 234
>11224
Length = 1520
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Frame = +1
Query: 257 CGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
CGK F SS L H +TH K + C C K F LR H+ VH+G PF+C +C
Sbjct: 25 CGKRFTASSNLYYHRMTHSKEKPHKCNQ--CSKSFPTPGDLRSHKYVHSGTWPFKCPVCS 198
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
K FS N+K HL H+GEKPY C C+KRF NL H K+H
Sbjct: 199 KGFSKQTNMKNHLILHSGEKPYECS--KCNKRFALQCNLRTHLKTH 330
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
+K +KC Q C K F L+ H H G + C V C K F + ++ H ++H+G
Sbjct: 85 EKPHKCNQ--CSKSFPTPGDLRSHKYVHSGTWPFKCPV--CSKGFSKQTNMKNHLILHSG 252
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
E+P+ C C K F+L NL+THL+TH E
Sbjct: 253 EKPYECSKCNKRFALQCNLRTHLKTHEAE 339
>19488
Length = 885
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Frame = +1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T QK + C DCGK F S L +H + H K + C+V CG+ F+ S L++H+L+H
Sbjct: 349 TGQKPFSC--NDCGKRFTCDSNLMRHKVIHNRPKAFACEV--CGQSFMLPSILKQHKLIH 516
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYV 363
+G + F C+ C K F+ LK H THTGEKPY C C+KRFTQ++++ H+ H
Sbjct: 517 SGFKLFSCDQCDKLFTKTSLLKQHKLTHTGEKPYECDV--CNKRFTQAAHVKRHKLIHAG 690
Query: 364 KEKR 367
++R
Sbjct: 691 IKRR 702
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Frame = +1
Query: 231 KPRTTPKSKEKTQV--TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCG 287
K P S ++ +V T K Y C + C K F S LK+H L H G K + C CG
Sbjct: 217 KTFALPSSLKQHKVIHTGLKSYLC--DVCSKSFAHSGNLKQHKLIHTGQKPFSC--NDCG 384
Query: 288 KRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKR 347
KRF +S L RH+++H + F CE+CG+SF L LK H H+G K + C CDK
Sbjct: 385 KRFTCDSNLMRHKVIHNRPKAFACEVCGQSFMLPSILKQHKLIHSGFKLFSCD--QCDKL 558
Query: 348 FTQSSNLSAHEKSH 361
FT++S L H+ +H
Sbjct: 559 FTKTSLLKQHKLTH 600
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Frame = +3
Query: 275 GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
G K + C V C K F+ L+ H+L+HTG++ + C+ICGK F+ +LK H HTG
Sbjct: 15 GEKTFKCDV--CQKCFLRACNLKEHKLIHTGQKSYVCDICGKCFTHASHLKRHTLVHTGL 188
Query: 335 KPYVC 339
K Y C
Sbjct: 189 KKYSC 203
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
+K +KC + C K FL + LK+H L H G K YVC + CGK F S L+RH LVHTG
Sbjct: 18 EKTFKC--DVCQKCFLRACNLKEHKLIHTGQKSYVCDI--CGKCFTHASHLKRHTLVHTG 185
Query: 306 ERPFRCEICGKSFSL 320
+ + C+ C + L
Sbjct: 186 LKKYSCDQCDEDVCL 230
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Frame = +3
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
GE+ F+C++C K F NLK H HTG+K YVC C K FT +S+L H H
Sbjct: 15 GEKTFKCDVCQKCFLRACNLKEHKLIHTGQKSYVCDI--CGKCFTHASHLKRHTLVH 179
>16657
Length = 1619
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T QK ++C + C + + + LK+H L H G + ++C++ C K F + +L+ HQLVH
Sbjct: 1116 TGQKLFEC--DICFQSYTQAGTLKRHKLIHSGLRSFICEI--CNKAFATSGRLKEHQLVH 1283
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
TG++ F C++C KSF NLK H H G K Y C C+ F +SN AH H
Sbjct: 1284 TGKKCFTCDVCFKSFKKKSNLKQHKILHIGLKAYKCDI--CNSSFASASNFKAHRLIH 1451
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 EDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
E C K F S LK+H L H G K + C V C K F S L++H+++H G + ++C+I
Sbjct: 1224 EICNKAFATSGRLKEHQLVHTGKKCFTCDV--CFKSFKKKSNLKQHKILHIGLKAYKCDI 1397
Query: 314 CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
C SF+ N K H HTG+K Y C C+ FTQS L H H
Sbjct: 1398 CNSSFASASNFKAHRLIHTGQKAYECTV--CNMAFTQSGTLKRHIVVH 1535
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%)
Frame = +3
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
K +VC V C K F+ + LRRHQL+H+ ++PF C++C K F+L NLK H HTG+K
Sbjct: 957 KPFVCDV--CNKSFIKSFYLRRHQLIHSDQKPFPCDLCDKKFTLACNLKQHKLIHTGQKL 1130
Query: 337 YVCKFPGCDKRFTQSSNLSAHEKSH 361
+ C C + +TQ+ L H+ H
Sbjct: 1131 FECDI--CFQSYTQAGTLKRHKLIH 1199
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Frame = +3
Query: 257 CGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F+ S L++H L H K + C + C K+F L++H+L+HTG++ F C+IC
Sbjct: 978 CNKSFIKSFYLRRHQLIHSDQKPFPCDL--CDKKFTLACNLKQHKLIHTGQKLFECDICF 1151
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+S++ LK H H+G + ++C+ C+K F S L H+ H
Sbjct: 1152 QSYTQAGTLKRHKLIHSGLRSFICEI--CNKAFATSGRLKEHQLVH 1283
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Frame = +3
Query: 234 TTPKSKEKTQV-TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFV 291
T+ + KE V T +K + C + C K F S LK+H + H G K Y C + C F
Sbjct: 1248 TSGRLKEHQLVHTGKKCFTC--DVCFKSFKKKSNLKQHKILHIGLKAYKCDI--CNSSFA 1415
Query: 292 DNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQS 351
S + H+L+HTG++ + C +C +F+ LK H+ HTGE+ + C C K F ++
Sbjct: 1416 SASNFKAHRLIHTGQKAYECTVCNMAFTQSGTLKRHIVVHTGERSFSCDV--CHKTFKRA 1589
Query: 352 SNLSA 356
L+
Sbjct: 1590 DELNG 1604
>00384
Length = 1441
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = +2
Query: 232 PRTTPKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRF 290
PR + K T QK + C + C K F L H H G K Y C V C K F
Sbjct: 203 PRKSGLKKHSVIHTDQKPFVC--DVCNKGFNRQGLLNTHKWIHTGQKSYFCDV--CSKTF 370
Query: 291 VDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQ 350
NS L++H+L+HTG + F C++C KSF+ NLK H+ H +KP+VC C+K F +
Sbjct: 371 TLNSTLKKHKLIHTGPKSFVCDVCQKSFTHQQNLKRHMLIHADKKPFVCDV--CNKGFNR 544
Query: 351 SSNLSAHEKSH 361
S+L+ H+ +H
Sbjct: 545 KSSLNXHKXNH 577
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +2
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T QK Y C + C K F +S LKKH L H G K +VC V C K F L+RH L+H
Sbjct: 326 TGQKSYFC--DVCSKTFTLNSTLKKHKLIHTGPKSFVCDV--CQKSFTHQQNLKRHMLIH 493
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
++PF C++C K F+ +L H HTG+K VC C+ FT++S L H+ H
Sbjct: 494 ADKKPFVCDVCNKGFNRKSSLNXHKXNHTGQKRCVCDV--CNASFTRNSXLKKHKLIH 661
Score = 57.4 bits (137), Expect(2) = 2e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +2
Query: 290 FVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFT 349
F S L++H ++HT ++PF C++C K F+ L TH HTG+K Y C C K FT
Sbjct: 200 FPRKSGLKKHSVIHTDQKPFVCDVCNKGFNRQGLLNTHKWIHTGQKSYFCDV--CSKTFT 373
Query: 350 QSSNLSAHEKSH 361
+S L H+ H
Sbjct: 374 LNSTLKKHKLIH 409
Score = 28.9 bits (63), Expect(2) = 2e-11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +3
Query: 231 KPRTTPKSKEKTQVTV---QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGC 286
K R T KS K + QK + C + C K F ++ LK+H L H K +VC V C
Sbjct: 24 KRRFTWKSNLKRHKMIHADQKSFMC--DVCSKSFTNTRNLKRHKLIHTNQKRFVCDV--C 191
Query: 287 GKRFVDNS 294
K F++ +
Sbjct: 192 NKSFLEKA 215
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = +3
Query: 279 YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYV 338
+VC V C +RF S L+RH+++H ++ F C++C KSF+ NLK H HT +K +V
Sbjct: 6 FVCGV--CKRRFTWKSNLKRHKMIHADQKSFMCDVCSKSFTNTRNLKRHKLIHTNQKRFV 179
Query: 339 CKFPGCDKRFTQSS 352
C C+K F + +
Sbjct: 180 C--DVCNKSFLEKA 215
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 308 PFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
PF C +C + F+ NLK H H +K ++C C K FT + NL H+ H
Sbjct: 3 PFVCGVCKRRFTWKSNLKRHKMIHADQKSFMCDV--CSKSFTNTRNLKRHKLIH 158
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
C K F S+L H H G K VC V C F NS L++H+L+HTG+ F +C
Sbjct: 524 CNKGFNRKSSLNXHKXNHTGQKRCVCDV--CNASFTRNSXLKKHKLIHTGQ*YFLGGVC 694
>03546
Length = 1654
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Frame = -3
Query: 248 KEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE 306
K ++C ++C F +S+LK H + H G ++VC++ C K+F L++H+++HTGE
Sbjct: 1487 KPFEC--DECATSFTRASSLKTHKMIHSGQNIHVCEI--CNKQFAWAKGLKQHKIIHTGE 1320
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+PF C IC KSF+ LK H+ H+G K + C C KRF +SS+L H+ +H
Sbjct: 1319 KPFACHICFKSFTHGNMLKQHILIHSGNKSFECDV--CSKRFLRSSHLKDHKLTH 1161
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Frame = -3
Query: 233 RTTPKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKM-YVCQVEGCGKRFV 291
R++ K T +K + C E+CG F +S+LK H H K + C + C K F
Sbjct: 1196 RSSHLKDHKLTHTGEKLFIC--EECGTAFTRASSLKSHKQLHAEKKPFECDI--CFKHFA 1029
Query: 292 DNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQS 351
L++H+ +HTG +PF CE+C K+F+ L+ H+ H+G+KP+ C C ++FT
Sbjct: 1028 WEKGLKQHKFIHTGRKPFVCEVCSKTFTESKTLRRHMAIHSGKKPFECDM--CGRKFTWQ 855
Query: 352 SNLSAHEKSH 361
SN+ H +H
Sbjct: 854 SNMIQHRFTH 825
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 69/146 (47%), Gaps = 29/146 (19%)
Frame = -3
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T +K + C C K F + LK+H+L H G K + C V C KRF+ +S L+ H+L H
Sbjct: 1328 TGEKPFAC--HICFKSFTHGNMLKQHILIHSGNKSFECDV--CSKRFLRSSHLKDHKLTH 1161
Query: 304 TGE----------------------------RPFRCEICGKSFSLDFNLKTHLRTHTGEK 335
TGE +PF C+IC K F+ + LK H HTG K
Sbjct: 1160 TGEKLFICEECGTAFTRASSLKSHKQLHAEKKPFECDICFKHFAWEKGLKQHKFIHTGRK 981
Query: 336 PYVCKFPGCDKRFTQSSNLSAHEKSH 361
P+VC+ C K FT+S L H H
Sbjct: 980 PFVCEV--CSKTFTESKTLRRHMAIH 909
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Frame = -3
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F + LK H ++H G K YVC + C K F +S L H+L H+G +PF C+ C
Sbjct: 1634 CDKTFAQACQLKTHTMSHAGLKTYVCDI--CNKSFGRSSHLNEHKLTHSGLKPFECDECA 1461
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
SF+ +LKTH H+G+ +VC+ C+K+F + L H+ H
Sbjct: 1460 TSFTRASSLKTHKMIHSGQNIHVCEI--CNKQFAWAKGLKQHKIIH 1329
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Frame = -3
Query: 308 PFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
PF C++C K+F+ LKTH +H G K YVC C+K F +SS+L+ H+ +H
Sbjct: 1652 PFDCKLCDKTFAQACQLKTHTMSHAGLKTYVCDI--CNKSFGRSSHLNEHKLTH 1497
>05406
Length = 1103
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Frame = +2
Query: 245 TVQKEYKCKQEDCGKVF---LDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQL 301
TV ++ CK+ C + F D + ++ + H Y C++ C K F ++ L RH
Sbjct: 23 TVVNQFSCKR--CDRTFKSKRDQTLHRQEVHNHNKTTYECKL--CSKSFCNSGNLDRHMK 190
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
VH RPF C IC K+F+ NL+ H H+GE+PY C F C+K FTQ SN+ H+ +H
Sbjct: 191 VHNDVRPFVCNICSKAFAQAVNLQRHYAVHSGERPYQCNF--CNKSFTQQSNMKRHKMTH 364
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +2
Query: 250 YKCKQEDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERP 308
Y+CK C K F +S L +HM H + +VC + C K F L+RH VH+GERP
Sbjct: 128 YECKL--CSKSFCNSGNLDRHMKVHNDVRPFVCNI--CSKAFAQAVNLQRHYAVHSGERP 295
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPG 343
++C C KSF+ N+K H THTGEKP+ C+ G
Sbjct: 296 YQCNFCNKSFTQQSNMKRHKMTHTGEKPFRCQRCG 400
Score = 55.8 bits (133), Expect(2) = 5e-14, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F + L++H H G + Y C C K F S ++RH++ HTGE+PFRC+ CG
Sbjct: 227 CSKAFAQAVNLQRHYAVHSGERPYQCNF--CNKSFTQQSNMKRHKMTHTGEKPFRCQRCG 400
Query: 316 K 316
+
Sbjct: 401 R 403
Score = 39.3 bits (90), Expect(2) = 5e-14, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = +1
Query: 318 FSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKE 365
FS NLK H H KPY C + C+K FTQ SN H +SH +KE
Sbjct: 406 FSQLVNLKKHKLGHLNAKPYQCNY--CEKGFTQLSNFKRHLQSH-IKE 540
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
L++H+L H +P++C C K F+ N K HL++H E
Sbjct: 424 LKKHKLGHLNAKPYQCNYCEKGFTQLSNFKRHLQSHIKE 540
>07350
Length = 1658
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Frame = -2
Query: 236 PKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNS 294
P++ + +T Q++ +CG FL+S LK+HM TH G ++Y+C + CG F S
Sbjct: 880 PRNLRRHMITHQRDRPHTCPECGATFLESCNLKRHMKTHNGKRLYIC--DECGAAFSRQS 707
Query: 295 KLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNL 354
++ H L H GE F+CE C +F+ +L+ H++ HTG +PY C+ C K F S
Sbjct: 706 YMKDHVLTHRGENIFQCEECNLTFNNAHHLRKHMKVHTGGRPYKCE--NCSKVFGWWSAY 533
Query: 355 SAHEKSH 361
H H
Sbjct: 532 KRHRAKH 512
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = -2
Query: 256 DCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
+CG FL LK H+ H G K YVC E C FV+ LRRH + H +RP C C
Sbjct: 988 ECGATFLREHNLKLHLQRHKGNKPYVC--EKCNASFVEPRNLRRHMITHQRDRPHTCPEC 815
Query: 315 GKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
G +F NLK H++TH G++ Y+C C F++ S + H +H
Sbjct: 814 GATFLESCNLKRHMKTHNGKRLYICD--ECGAAFSRQSYMKDHVLTH 680
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Frame = -2
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQV---------EGCGKRFVDNSK 295
T + YKC E+C KVF SA K+H H A+ +V + CG F K
Sbjct: 595 TGGRPYKC--ENCSKVFGWWSAYKRHRAKHIAEANGEEVIDEDRRNKCDECGATFNRPCK 422
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLS 355
L RH+L+H+GERPF C C +F+ ++L+ H + H G+KP+ C+ C F ++ L
Sbjct: 421 LTRHKLLHSGERPFSCSFCKATFTQLYHLRAHEQRHAGDKPHKCE--ECGASFLEADKLR 248
Query: 356 AHEKSH 361
H + H
Sbjct: 247 RHARIH 230
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = -2
Query: 253 KQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRC 311
K ++CG F L +H L H G + + C C F LR H+ H G++P +C
Sbjct: 463 KCDECGATFNRPCKLTRHKLLHSGERPFSCSF--CKATFTQLYHLRAHEQRHAGDKPHKC 290
Query: 312 EICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
E CG SF L+ H R H+ + C RF+ +L+ H K H
Sbjct: 289 EECGASFLEADKLRRHARIHSEKISSTVVCEECGARFSLPRHLTNHMKLH 140
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -2
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE--RPFRCEI 313
C F L+ H H G K + C E CG F++ KLRRH +H+ + CE
Sbjct: 367 CKATFTQLYHLRAHEQRHAGDKPHKC--EECGASFLEADKLRRHARIHSEKISSTVVCEE 194
Query: 314 CGKSFSLDFNLKTHLRTHTGEK 335
CG FSL +L H++ H E+
Sbjct: 193 CGARFSLPRHLTNHMKLHRRER 128
>14953
Length = 1722
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = +3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
+K Y C C + F ++L H H G + + C E C + F D + L RH H+
Sbjct: 630 EKNYSCAV--CNETFPTFTSLNLHKRNHVGYRPFKCTAEDCNRAFPDVASLNRHSRTHSE 803
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKE 365
+RP C+ CGK F + +L+ H R HTGEKP+VC+ C F QS+ L +H + H + +
Sbjct: 804 DRPHICQHCGKGFKMQNHLREHTRLHTGEKPFVCEI--CGAGFAQSNGLRSHSRQHLLDQ 977
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = +3
Query: 232 PRTTPKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRF 290
P T + K + +KC EDC + F D ++L +H TH + ++CQ CGK F
Sbjct: 669 PTFTSLNLHKRNHVGYRPFKCTAEDCNRAFPDVASLNRHSRTHSEDRPHICQ--HCGKGF 842
Query: 291 VDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQ 350
+ LR H +HTGE+PF CEICG F+ L++H R H ++ C C+K F+
Sbjct: 843 KMQNHLREHTRLHTGEKPFVCEICGAGFAQSNGLRSHSRQHLLDQGNQCNI--CNKVFSH 1016
Query: 351 SSNLSAHEKSH 361
L H+++H
Sbjct: 1017PQFLELHKRNH 1049
Score = 40.8 bits (94), Expect(2) = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = +3
Query: 257 CGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQ-LVH-----TGERPF 309
C F ++S L H HG K + C + C + F + L H+ L H GE+ F
Sbjct: 1182 CASTFAEASELSAHKKIHGGEKPFTCDL--CDQTFRTPANLGAHRKLKHEMGNKKGEKHF 1355
Query: 310 RCEICGKSFSLDFNLKTHLRTHT 332
C+ICG SFS NL H R +T
Sbjct: 1356 TCDICGASFSQACNLGIHKRKNT 1424
Score = 40.0 bits (92), Expect(2) = 6e-10, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 325 KTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKEKR 367
K H+ +H+ E+ YVC CD RF++ NL AH+K + +K +R
Sbjct: 1415 KKHIDSHSSERKYVCDI--CDARFSEPCNLGAHKKLNILKSQR 1537
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Frame = +3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKH-MLTH------GAKMYVCQVEGCGKRFVDNSKLRRH 299
+K + C + CG+ F ++ L H L H G +Y C V C F + S+L H
Sbjct: 1056 EKPFPC--DVCGQNFRTTTNLGAHKRLKHDIVNRKGTNVYTCDV--CASTFAEASELSAH 1223
Query: 300 QLVHTGERPFRCEICGKSFSLDFNLKTH------LRTHTGEKPYVCKFPGCDKRFTQSSN 353
+ +H GE+PF C++C ++F NL H + GEK + C C F+Q+ N
Sbjct: 1224 KKIHGGEKPFTCDLCDQTFRTPANLGAHRKLKHEMGNKKGEKHFTCDI--CGASFSQACN 1397
Query: 354 LSAHEK 359
L H++
Sbjct: 1398 LGIHKR 1415
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Frame = +1
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRTHTG--------EKPYVCKFPGCDKRFTQSSNLSA 356
G F C+IC F NL H R G +KP+ C+ C R++ +L
Sbjct: 1540 GRTIFECDICAAKFYRACNLSGHKRRKHGDSGGMKEIDKPFACEI--CHARYSSEGHLXE 1713
Query: 357 HE 358
H+
Sbjct: 1714 HQ 1719
>00075
Length = 1106
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = -3
Query: 243 QVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQL 301
++T K+Y C Q C K F + +K HML H G K Y C + C K F L+ H
Sbjct: 1017 KLTRAKQYGCSQ--CDKKFTKKTNIKMHMLIHSGEKPYTCTL--CQKSFTKQGNLKVHLR 850
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
H+G +P+ C C F +L H+R HTGE+PY C P C FT SS+L H K H
Sbjct: 849 SHSGNKPYSCSECLAVFYTSSSLTVHMRIHTGERPYRC--PHCPAGFTTSSSLKLHIKKH 676
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Frame = -3
Query: 230 LKPRTTPKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKM-YVCQVEGCGK 288
LK K KEKT + CKQ C F D ALK HM TH + C + C
Sbjct: 390 LKLHLLRKHKEKTPGS------CKQ--CDLQFPDQDALKLHMRTHRQTTPFSCTL--CDA 241
Query: 289 RFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRF 348
F L H HTGE+P+ C C +FS L+ H+R HTGEKP+ C CD +
Sbjct: 240 TFRCMGGLNVHMRSHTGEKPYLCTHCNAAFSTSSYLRIHVRQHTGEKPFKCSL--CDAAY 67
Query: 349 TQSSNLSAHEKSHYVKEKR 367
+SS+L H +H KEK+
Sbjct: 66 ARSSSLKVH-MAHARKEKQ 13
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%)
Frame = -3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE 306
QK + C C VF + ++LK H+L + + C +F D L+ H H
Sbjct: 444 QKLHYC--TSCEAVFAEFNSLKLHLLRKHKEKTPGSCKQCDLQFPDQDALKLHMRTHRQT 271
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
PF C +C +F L H+R+HTGEKPY+C C+ F+ SS L H + H
Sbjct: 270 TPFSCTLCDATFRCMGGLNVHMRSHTGEKPYLCTH--CNAAFSTSSYLRIHVRQH 112
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = -3
Query: 296 LRRHQL-VHTGERPFR-----CEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFT 349
LR H + +H G + R C C K F+ N+K H+ H+GEKPY C C K FT
Sbjct: 1053 LRLHHMQIHRGMKLTRAKQYGCSQCDKKFTKKTNIKMHMLIHSGEKPYTCTL--CQKSFT 880
Query: 350 QSSNLSAHEKSH 361
+ NL H +SH
Sbjct: 879 KQGNLKVHLRSH 844
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 59/158 (37%), Gaps = 48/158 (30%)
Frame = -3
Query: 248 KEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE 306
K Y C +C VF SS+L HM H G + Y C C F +S L+ H HTGE
Sbjct: 834 KPYSC--SECLAVFYTSSSLTVHMRIHTGERPYRC--PHCPAGFTTSSSLKLHIKKHTGE 667
Query: 307 RPFRCEICGK-----------------------------------------------SFS 319
RP RC CG +F
Sbjct: 666 RPHRCSHCGAGFLTRRRLKAHEKKRDXSNKCRNDWTKSYQENGCVNLRVYPCTECDATFM 487
Query: 320 LDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAH 357
D +LK HL+ H+G+K + C C+ F + ++L H
Sbjct: 486 TDGHLKIHLKEHSGQKLHYCT--SCEAVFAEFNSLKLH 379
>01127
Length = 1534
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Frame = +1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C F LKKH ++H G K +VC V C K F + L++H L+HTGE+PF CE+C
Sbjct: 187 CHTSFKRKHFLKKHKMSHTGEKPFVCDV--CNKCFALKNHLKKHTLIHTGEKPFHCEVCS 360
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
KSF+ L H+ H+ EKP C CDKRF S L +H H
Sbjct: 361 KSFARKCTLNVHMSVHSDEKPCECNM--CDKRFGTKSLLLSHMLVH 492
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Frame = +1
Query: 249 EYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE- 306
E C+ C K F S L HML H G K + C + C KRF S L H L H G
Sbjct: 415 EKPCECNMCDKRFGTKSLLLSHMLVHSGEKPFECDM--CDKRFAKKSNLNTHMLTHPGHD 588
Query: 307 ------RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
+P C++C KSF +LKTH+ H+G+K +VC CDKRFT ++L H+
Sbjct: 589 LNQTDRKPVVCDVCHKSFRHKGHLKTHMLIHSGQKSFVCDV--CDKRFTTGTHLKLHKVV 762
Query: 361 H 361
H
Sbjct: 763 H 765
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Frame = +1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHT 304
T +K + C E C K F L HM H + C+ C KRF S L H LVH+
Sbjct: 325 TGEKPFHC--EVCSKSFARKCTLNVHMSVHSDE-KPCECNMCDKRFGTKSLLLSHMLVHS 495
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRTHTGE-------KPYVCKFPGCDKRFTQSSNLSAH 357
GE+PF C++C K F+ NL TH+ TH G KP VC C K F +L H
Sbjct: 496 GEKPFECDMCDKRFAKKSNLNTHMLTHPGHDLNQTDRKPVVCDV--CHKSFRHKGHLKTH 669
Query: 358 EKSH 361
H
Sbjct: 670 MLIH 681
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTHGA--------KMYVCQVEGCGKRFVDNSKLRR 298
+K ++C C K F S L HMLTH K VC V C K F L+
Sbjct: 499 EKPFECDM--CDKRFAKKSNLNTHMLTHPGHDLNQTDRKPVVCDV--CHKSFRHKGHLKT 666
Query: 299 HQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRF 348
H L+H+G++ F C++C K F+ +LK H H+ EKP+VC C KRF
Sbjct: 667 HMLIHSGQKSFVCDVCDKRFTTGTHLKLHKVVHSDEKPFVCDI--CYKRF 810
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 270 HMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHL 328
HML H VC V C K F S L H+LVH+ +PF C++C SF LK H
Sbjct: 58 HMLLHADPNALVCNV--CDKTFTRPSDLTLHKLVHSDLKPFECDVCHTSFKRKHFLKKHK 231
Query: 329 RTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+HTGEKP+VC C+K F ++L H H
Sbjct: 232 MSHTGEKPFVCDV--CNKCFALKNHLKKHTLIH 324
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +3
Query: 324 LKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
L TH HTG KP+VC CDKRF + + LS H+ +H
Sbjct: 825 LNTHKFLHTGLKPFVCDV--CDKRFARKAKLSEHKLTH 932
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
L H+ +HTG +PF C++C K F+ L H TH G+
Sbjct: 825 LNTHKFLHTGLKPFVCDVCDKRFARKAKLSEHKLTHRGQ 941
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 267 LKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE 306
L H H G K +VC V C KRF +KL H+L H G+
Sbjct: 825 LNTHKFLHTGLKPFVCDV--CDKRFARKAKLSEHKLTHRGQ 941
>13577
Length = 488
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = -1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C F + LK HM H G + YVC E CG F L+ H +HTGE+P+ C C
Sbjct: 431 CNFRFSRACGLKVHMRRHTGERPYVC--EECGASFAQAGGLKLHMRIHTGEKPYLCSECP 258
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+F L H+RTHTG +PYVC P C F NL H K H
Sbjct: 257 SAFREKCKLNIHMRTHTGVRPYVC--PECSTGFITLGNLKKHRKKH 126
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 48/89 (53%)
Frame = -1
Query: 273 THGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHT 332
TH + C V C RF L+ H HTGERP+ CE CG SF+ LK H+R HT
Sbjct: 464 THWGTPFPCPV--CNFRFSRACGLKVHMRRHTGERPYVCEECGASFAQAGGLKLHMRIHT 291
Query: 333 GEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
GEKPY+C C F + L+ H ++H
Sbjct: 290 GEKPYLCS--ECPSAFREKCKLNIHMRTH 210
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T ++ Y C E+CG F + LK HM H G K Y+C C F + KL H H
Sbjct: 377 TGERPYVC--EECGASFAQAGGLKLHMRIHTGEKPYLCS--ECPSAFREKCKLNIHMRTH 210
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTH 331
TG RP+ C C F NLK H + H
Sbjct: 209 TGVRPYVCPECSTGFITLGNLKKHRKKH 126
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 5/26 (19%)
Frame = -2
Query: 323 NLKTHLRTHTGEKPYVCK-----FPG 343
LK+H+RTHTGE+P + FPG
Sbjct: 487 GLKSHMRTHTGERPSPAQYATSGFPG 410
>21725
Length = 736
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Frame = +3
Query: 255 EDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
+ CGK F D S+LK H + H G + +VC + C K FV +S + H L H+ ++ F C++
Sbjct: 180 DTCGKTFKDKSSLKTHNMYHVGQRPFVCNI--CNKAFVQSSDFKAHTLTHSDQKSFICDV 353
Query: 314 CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
CG +F LK+H TH +KP+ C CD+ F + L+AH H
Sbjct: 354 CGIAFXTAGYLKSHKITHLDKKPFACDL--CDRTFXRKYALTAHVLKH 491
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%)
Frame = +3
Query: 269 KHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHL 328
KH TH +++ + + CGK F D S L+ H + H G+RPF C IC K+F + K H
Sbjct: 138 KHTATHSSRIPI-SCDTCGKTFKDKSSLKTHNMYHVGQRPFVCNICNKAFVQSSDFKAHT 314
Query: 329 RTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
TH+ +K ++C C F + L +H+ +H
Sbjct: 315 LTHSDQKSFICDV--CGIAFXTAGYLKSHKITH 407
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
Q+ + C C K F+ SS K H LTH K ++C V CG F L+ H++ H
Sbjct: 246 QRPFVC--NICNKAFVQSSDFKAHTLTHSDQKSFICDV--CGIAFXTAGYLKSHKITHLD 413
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPG 343
++PF C++C ++F + L H+ H+G+K ++C G
Sbjct: 414 KKPFACDLCDRTFXRKYALTAHVLKHSGQKQFMCDVCG 527
Score = 47.8 bits (112), Expect(2) = 4e-10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
QK + C + CG F + LK H +TH K + C + C + F L H L H+G
Sbjct: 330 QKSFIC--DVCGIAFXTAGYLKSHKITHLDKKPFACDL--CDRTFXRKYALTAHVLKHSG 497
Query: 306 ERPFRCEICGKSFSL 320
++ F C++CG +F+L
Sbjct: 498 QKQFMCDVCGMTFTL 542
Score = 33.9 bits (76), Expect(2) = 4e-10, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 323 NLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHE 358
NL+ H HTG+KP+VC C FT+ NL+ H+
Sbjct: 550 NLRRHXYKHTGQKPFVCDV--CGMTFTRMRNLTRHK 651
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTH 327
LRRH HTG++PF C++CG +F+ NL H
Sbjct: 553 LRRHXYKHTGQKPFVCDVCGMTFTRMRNLTRH 648
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 267 LKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHT 304
L++H H G K +VC V CG F L RH+L++T
Sbjct: 553 LRRHXYKHTGQKPFVCDV--CGMTFTRMRNLTRHKLINT 663
>34573
Length = 1514
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +3
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQL-V 302
T +K ++C + C K F LK+H +TH G + +VCQ+ C K F LR H + +
Sbjct: 1233 TGEKPFQC--DLCEKAFSQPGDLKRHKITHSGTRPFVCQI--CNKSFTWARSLRTHMMTI 1400
Query: 303 HTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
H E+ F CE+C K+F L NLK H+ HTG KPYVC
Sbjct: 1401 HNEEKAFMCEVCSKTFKLSHNLKVHMMIHTGVKPYVC 1511
Score = 64.3 bits (155), Expect(2) = 4e-12, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%)
Frame = +3
Query: 295 KLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNL 354
+ + H L+HTGE+PF+C++C K+FS +LK H TH+G +P+VC+ C+K FT + +L
Sbjct: 1206 QFKTHLLIHTGEKPFQCDLCEKAFSQPGDLKRHKITHSGTRPFVCQI--CNKSFTWARSL 1379
Query: 355 SAHEKSHYVKEK 366
H + + +EK
Sbjct: 1380 RTHMMTIHNEEK 1415
Score = 24.3 bits (51), Expect(2) = 4e-12, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH--GAKMYVCQVEGCGKRFVDNSKLR 297
T Q + C + C K F S LK H TH K VC E C K F S L+
Sbjct: 1063 TGQNPFMC--DICSKNFTQESELKAHKATHVRVKKSLVC--ETCNKVFTKASNLK 1215
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHT-GEK 335
K +VC+V C K F L+ H L+HTG+ PF C+IC K+F+ + LK H TH +K
Sbjct: 988 KPFVCEV--CNKTFAKACNLKSHILIHTGQNPFMCDICSKNFTQESELKAHKATHVRVKK 1161
Query: 336 PYVCKFPGCDKRFTQSSNL 354
VC+ C+K FT++SNL
Sbjct: 1162 SLVCE--TCNKVFTKASNL 1212
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +1
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
++PF CE+C K+F+ NLK+H+ HTG+ P++C C K FTQ S L AH+ +H
Sbjct: 985 QKPFVCEVCNKTFAKACNLKSHILIHTGQNPFMCDI--CSKNFTQESELKAHKATH 1146
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHT- 304
QK + C E C K F + LK H+L H G ++C + C K F S+L+ H+ H
Sbjct: 985 QKPFVC--EVCNKTFAKACNLKSHILIHTGQNPFMCDI--CSKNFTQESELKAHKATHVR 1152
Query: 305 GERPFRCEICGKSFSLDFNLK 325
++ CE C K F+ NLK
Sbjct: 1153 VKKSLVCETCNKVFTKASNLK 1215
>21993
Length = 395
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = -1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
++ + C + C K F + +LK H+ H G K YVC V C + F +S L+ H+L+HTG
Sbjct: 392 ERSFTC--DICFKSFTLARSLKDHLALHSGEKSYVCNV--CLRSFTQSSALKTHKLIHTG 225
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAH 357
+ + C++C KSF+ L++H H+G KP+ C C K F+++ NLSAH
Sbjct: 224 LKLYECDVCLKSFAQPSTLRSHKVVHSGNKPFECDM--CKKSFSRNYNLSAH 75
>19781
Length = 1678
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +2
Query: 279 YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLR-THTGEKPY 337
Y C+ CGK F ++ L RH HTGE+P++C+ C +SFS+ NL+ H+R H EKP+
Sbjct: 200 YSCKF--CGKIFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPF 373
Query: 338 VCKFPGCDKRFTQSSNLSAHEKSH 361
C P CD+ F Q +NL H K H
Sbjct: 374 RC--PLCDRSFGQQTNLDRHLKKH 439
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Frame = +2
Query: 246 VQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRH-QLVH 303
+++ Y CK CGK+F S+ L +H+ TH G + Y C+ C + F +S L+RH + +H
Sbjct: 188 LKERYSCKF--CGKIFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIH 355
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFP 342
E+PFRC +C +SF NL HL+ H E P V P
Sbjct: 356 NKEKPFRCPLCDRSFGQQTNLDRHLKKHEQEGPNVADSP 472
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +2
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKEK 366
+ C+ CGK F NL HLRTHTGE+PY CK+ C++ F+ SSNL H ++ + KEK
Sbjct: 200 YSCKFCGKIFPRSANLTRHLRTHTGEQPYKCKY--CERSFSISSNLQRHVRNIHNKEK 367
>04119
Length = 898
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = -1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
CGK F ++ LK H+ H G K + CQ+ C K F +S L+ H H+G RP+ CE CG
Sbjct: 298 CGKSFTEARCLKDHLRIHSGEKPHKCQL--CAKSFTQSSTLKAHMRSHSGARPYPCEYCG 125
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVC 339
KSFS + H R HTGEKPY+C
Sbjct: 124 KSFSDVSSRNRHHRIHTGEKPYIC 53
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Frame = -1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHM--LTHGAKMYVCQVEGCGKRFVDNSKLRRHQLV 302
T ++ ++C E C F + +H+ + G + ++C V CGK F + L+ H +
Sbjct: 415 TGERPFEC--EHCEATFHRKANYLQHINSVHLGIRPHICHV--CGKSFTEARCLKDHLRI 248
Query: 303 HTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
H+GE+P +C++C KSF+ LK H+R+H+G +PY C++ C K F+ S+ + H + H
Sbjct: 247 HSGEKPHKCQLCAKSFTQSSTLKAHMRSHSGARPYPCEY--CGKSFSDVSSRNRHHRIH 77
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 29/92 (31%)
Frame = -1
Query: 299 HQLVHTGERPFRCE-----------------------------ICGKSFSLDFNLKTHLR 329
H+ HTGERPF CE +CGKSF+ LK HLR
Sbjct: 430 HRRTHTGERPFECEHCEATFHRKANYLQHINSVHLGIRPHICHVCGKSFTEARCLKDHLR 251
Query: 330 THTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
H+GEKP+ C+ C K FTQSS L AH +SH
Sbjct: 250 IHSGEKPHKCQL--CAKSFTQSSTLKAHMRSH 161
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = -1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
+K +KC+ C K F SS LK HM +H GA+ Y C E CGK F D S RH +HTG
Sbjct: 238 EKPHKCQL--CAKSFTQSSTLKAHMRSHSGARPYPC--EYCGKSFSDVSSRNRHHRIHTG 71
Query: 306 ERPFRCEICGKSFSLDFNLKTHL 328
E+P+ C C FS K H+
Sbjct: 70 EKPYICSECPAMFSRLELCKNHI 2
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 308 PFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
PFR F + + H RTHTGE+P+ C+ C+ F + +N H S
Sbjct: 472 PFR-----YIFKILAEWEVHRRTHTGERPFECEH--CEATFHRKANYLQHINS 335
>04291
Length = 1741
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +1
Query: 246 VQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHT 304
+K ++C+ +DC KV+ SS LK H+ TH G + + C GC KRF + +L RH HT
Sbjct: 226 AKKLHRCQYKDCDKVYGKSSHLKAHLRTHTGERPFPCTWSGCEKRFARSDELARHIRTHT 405
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCK 340
GE+ F C IC K F +L H R H +P + K
Sbjct: 406 GEKKFACPICQKRFMRSDHLNKHARRHPDFQPSMIK 513
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +1
Query: 310 RCEI--CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
RC+ C K + +LK HLRTHTGE+P+ C + GC+KRF +S L+ H ++H
Sbjct: 241 RCQYKDCDKVYGKSSHLKAHLRTHTGERPFPCTWSGCEKRFARSDELARHIRTH 402
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 330 THTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
T+ +K + C++ CDK + +SS+L AH ++H
Sbjct: 217 TNDAKKLHRCQYKDCDKVYGKSSHLKAHLRTH 312
>04346
Length = 1683
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Frame = -1
Query: 273 THGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRC--EICGKSFSLDFNLKTHLRT 330
T G K++ CQ +GC K + +S L+ H HTGERPF C C K F+ L H RT
Sbjct: 984 TDGKKLHKCQYKGCDKVYGKSSHLKAHLRTHTGERPFPCLWTGCEKRFARSDELARHTRT 805
Query: 331 HTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
HTGEK + C P C KRF +S +L+ H H
Sbjct: 804 HTGEKRFPC--PVCQKRFMRSDHLTKHALRH 718
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = -1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
+K +KC+ + C KV+ SS LK H+ TH G + + C GC KRF + +L RH HTG
Sbjct: 975 KKLHKCQYKGCDKVYGKSSHLKAHLRTHTGERPFPCLWTGCEKRFARSDELARHTRTHTG 796
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCK 340
E+ F C +C K F +L H H P + K
Sbjct: 795 EKRFPCPVCQKRFMRSDHLTKHALRHPNFDPSMLK 691
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Frame = -1
Query: 305 GERPFRCEI--CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHY 362
G++ +C+ C K + +LK HLRTHTGE+P+ C + GC+KRF +S L+ H ++H
Sbjct: 978 GKKLHKCQYKGCDKVYGKSSHLKAHLRTHTGERPFPCLWTGCEKRFARSDELARHTRTH- 802
Query: 363 VKEKR 367
EKR
Sbjct: 801 TGEKR 787
>16861
Length = 1179
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%)
Frame = +1
Query: 260 VFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFS 319
+F ++S + +H K ++C V C K F L +H+L+HTG+ F C++C K F+
Sbjct: 265 LFTETSFEGTQVGSHWTKSFMCDV--CEKGFTLKHNLNKHKLIHTGQNQFVCDVCEKCFA 438
Query: 320 LDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+LKTH HTGEKP+VC C+KRF SN + H+ H
Sbjct: 439 HKQHLKTHKMIHTGEKPFVCGV--CNKRFRHISNFNTHKLLH 558
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +1
Query: 235 TPKSKEKTQVTVQ--KEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFV 291
T S E TQV K + C + C K F L KH L H G +VC V C K F
Sbjct: 271 TETSFEGTQVGSHWTKSFMC--DVCEKGFTLKHNLNKHKLIHTGQNQFVCDV--CEKCFA 438
Query: 292 DNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
L+ H+++HTGE+PF C +C K F N TH HTG+
Sbjct: 439 HKQHLKTHKMIHTGEKPFVCGVCNKRFRHISNFNTHKLLHTGQ 567
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 296 LRRHQLVHTGERPFRCEICGKSF 318
L+ H+L+HTG+R + C++C KSF
Sbjct: 1028 LKGHKLIHTGQRTYVCDVCNKSF 1096
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
V T RPF C++C +S +LK H HTG+ ++C
Sbjct: 218 VTTXLRPFVCDVCNXXYSRKHHLKEHKLVHTGQN-HLC 328
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 266 ALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNL 324
A K H L H K +VC V C F ++ L HT F F + L
Sbjct: 857 AFKNHNLIHSDNKXFVCXV--CNAXFSLXTEXHSXXLTHTDH*IFXMWFV*XEF*IKKYL 1030
Query: 325 KTHLRTHTGEKPYVCKFPGCDKRF 348
K H HTG++ YVC C+K F
Sbjct: 1031KGHKLIHTGQRTYVC--DVCNKSF 1096
>05734
Length = 1204
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = -1
Query: 255 EDCGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
+ CGK F+ L+ H+ H + Y CQ CG F L H HT ++PF+C+
Sbjct: 967 DKCGKSFVSVYYLRDHIKIHSEERRYQCQ--QCGAAFKQKPALYAHAKKHTNQKPFQCQY 794
Query: 314 CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAH 357
CG F +K H+RTHTGEKPY C C+ F +SN+ H
Sbjct: 793 CGLKFRDSQKVKIHVRTHTGEKPYQCTM--CEASFVSNSNMWQH 668
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 58/112 (51%)
Frame = -1
Query: 250 YKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPF 309
Y CKQ C K F + SA+++H H + + C CG F S+L +H H ERP
Sbjct: 1141 YVCKQ--CNKTFKNKSAIQQHTRVHSRQDHQCPT--CGLSFKFPSRLTKHLKTHGTERPH 974
Query: 310 RCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
C+ CGKSF + L+ H++ H+ E+ Y C+ C F Q L AH K H
Sbjct: 973 VCDKCGKSFVSVYYLRDHIKIHSEERRYQCQ--QCGAAFKQKPALYAHAKKH 824
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = -1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
++ Y+C+Q CG F AL H H K + CQ CG +F D+ K++ H HTG
Sbjct: 901 ERRYQCQQ--CGAAFKQKPALYAHAKKHTNQKPFQCQY--CGLKFRDSQKVKIHVRTHTG 734
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKE 365
E+P++C +C SF + N+ H G+ P C F L AH K+ + E
Sbjct: 733 EKPYQCTMCEASFVSNSNMWQHCAYVHGKSTKTHPCPNCPLTFAAKGKLKAHIKNTHSAE 554
>35102
Length = 687
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 49/89 (55%)
Frame = +2
Query: 273 THGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHT 332
T G Y C E CG+RF +L H+ HTG PF C +CGK F + +L H R HT
Sbjct: 188 TRGKMAYSC--EDCGERFFRKDQLHVHRRNHTGIHPFTCSVCGKHFQKNKHLTIHTRLHT 361
Query: 333 GEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
GEKP+VC C +F +S L H+K H
Sbjct: 362 GEKPFVCDI--CGDKFHRSDALFIHKKKH 442
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
+H+GE PF+CE CG+ F+ L H R HTGE+P+ F ++ F L+ H +
Sbjct: 15 LHSGEMPFKCEFCGQGFAKGSALTVHRRNHTGERPFCAIF--VERGFAAGGKLTYHRR 182
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +3
Query: 282 QVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLR-THTGEKPYVCK 340
+ E CG+ F S L H+ HTGERPF + F+ L H R H G+ P +
Sbjct: 39 KCEFCGQGFAKGSALTVHRRNHTGERPFCAIFVERGFAAGGKLTYHRRKAHGGKWPTAVR 218
Query: 341 FPGCDKRFTQSSNLSAHEKSHYVKEKR 367
+ F ++S S E + R
Sbjct: 219 IVA-NASFARTSCTSIAETTRVSTPSR 296
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 328 LRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
LR H+GE P+ C+F C + F + S L+ H ++H
Sbjct: 9 LRLHSGEMPFKCEF--CGQGFAKGSALTVHRRNH 104
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 29/83 (34%)
Frame = +2
Query: 308 PFRCEICGKSFSLDF-----------------------------NLKTHLRTHTGEKPYV 338
PF C+ICG+ F L H R HTG P+
Sbjct: 116 PFLCDICGEGFCCGGETHVSPAQSTRGKMAYSCEDCGERFFRKDQLHVHRRNHTGIHPFT 295
Query: 339 CKFPGCDKRFTQSSNLSAHEKSH 361
C C K F ++ +L+ H + H
Sbjct: 296 CSV--CGKHFQKNKHLTIHTRLH 358
>26077
Length = 421
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Frame = -1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T +K + C + C + F S+ L +H L H G K +VC+V C K F +L++HQ H
Sbjct: 406 TGKKPFTC--DICQESFTQSAHLSRHKLLHIGEKCFVCEV--CDKAFTQPDQLKQHQQSH 239
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
T +P C++C K+FS ++L+ H+ THTG + + C C+K + Q+ +L H+ H
Sbjct: 238 TDIKPCVCQLCYKTFSRPYHLRRHMVTHTGHRGFQCDV--CNKSYKQACHLKQHKARH 71
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = -1
Query: 270 HMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHL 328
H L H G K + C + C + F ++ L RH+L+H GE+ F CE+C K+F+ LK H
Sbjct: 421 HKLLHTGKKPFTCDI--CQESFTQSAHLSRHKLLHIGEKCFVCEVCDKAFTQPDQLKQHQ 248
Query: 329 RTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
++HT KP VC+ C K F++ +L H +H
Sbjct: 247 QSHTDIKPCVCQL--CYKTFSRPYHLRRHMVTH 155
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = -1
Query: 255 EDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
E C K F LK+H +H K VCQ+ C K F LRRH + HTG R F+C++
Sbjct: 298 EVCDKAFTQPDQLKQHQQSHTDIKPCVCQL--CYKTFSRPYHLRRHMVTHTGHRGFQCDV 125
Query: 314 CGKSFSLDFNLKTHLRTHTGEKP 336
C KS+ +LK H HT P
Sbjct: 124 CNKSYKQACHLKQHKARHTHPAP 56
>07214
Length = 503
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Frame = -1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHM--LTHGAKMYVCQVEGCGKRFVDNSKLRRHQLV 302
T +K Y C C F SS L KH+ + G K + C + CG RF L H
Sbjct: 425 TGEKPYVC--PTCKMRFAASSRLSKHVRGVHQGIKPHQCPL--CGSRFATAGHLSAHVKT 258
Query: 303 HTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
HT ++PFRC+ C + F L+ HLR+H G+KPY C+ C F + S L H H
Sbjct: 257 HTADKPFRCDYCSRCFIDSTKLRRHLRSHKGDKPYQCQ--TCQAEFPRRSLLKNHMAVH 87
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -1
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
ERP++CE C F+ +L H+R HTGEKPYVC P C RF SS LS H +
Sbjct: 503 ERPYQCEQCPAKFTQKGDLTVHIRKHTGEKPYVC--PTCKMRFAASSRLSKHVR 348
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = -1
Query: 282 QVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLR-THTGEKPYVCK 340
Q E C +F L H HTGE+P+ C C F+ L H+R H G KP+ C
Sbjct: 491 QCEQCPAKFTQKGDLTVHIRKHTGEKPYVCPTCKMRFAASSRLSKHVRGVHQGIKPHQC- 315
Query: 341 FPGCDKRFTQSSNLSAHEKSH 361
P C RF + +LSAH K+H
Sbjct: 314 -PLCGSRFATAGHLSAHVKTH 255
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = -1
Query: 257 CGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
CG F + L H+ TH A K + C + C + F+D++KLRRH H G++P++C+ C
Sbjct: 308 CGSRFATAGHLSAHVKTHTADKPFRC--DYCSRCFIDSTKLRRHLRSHKGDKPYQCQTCQ 135
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
F LK H+ H K Y C C S H + H
Sbjct: 134 AEFPRRSLLKNHMAVHADIKRYKCDH--CPATLVSQSAWLVHTRRH 3
>32689
Length = 503
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%)
Frame = -1
Query: 257 CGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGK 316
C K F D S + H L H + + E C F L H+ HTGERP+ CE CGK
Sbjct: 365 CNKTFKDRSNCRAHELRHFGEGKHLKCEHCPASFRSKRHLADHRRKHTGERPYSCETCGK 186
Query: 317 SFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKEK 366
SF+ L H R H+ +PY C+ CD RF L H + + E+
Sbjct: 185 SFARSTTLDQHRRVHSDVRPYACE--ECDARFKHRCLLIVHRRKAHTFER 42
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQL-V 302
T ++ Y C E CGK F S+ L +H H + Y C E C RF L H+
Sbjct: 224 TGERPYSC--ETCGKSFARSTTLDQHRRVHSDVRPYAC--EECDARFKHRCLLIVHRRKA 57
Query: 303 HTGERPFRCEICGK 316
HT ERPF C IC K
Sbjct: 56 HTFERPFSCNICRK 15
>18947
Length = 566
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Frame = +1
Query: 230 LKPRTTPKSKEKTQVTV----QKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEG 285
L +T ++ E TQ + Q + C + C KVF D+ LK H + H A +VC V
Sbjct: 70 LCSQTFAQAGELTQHLLDHQHQTSFVC--DVCCKVFTDAYDLKTHRMGHSA--FVCGV-- 231
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCD 345
C F D + L++H L H+ R F C +C ++F+ +LK H+ H+G +VC C
Sbjct: 232 CEASFNDEADLKKHMLSHSAFRIFVCAVCERTFNDKGDLKKHMSIHSGLSTFVCAV--CQ 405
Query: 346 KRFTQSSNLSAH 357
+ FT+ +L+ H
Sbjct: 406 RSFTEEKDLNKH 441
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +1
Query: 279 YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYV 338
+ CQ+ C + F +L +H L H + F C++C K F+ ++LKTH G +V
Sbjct: 58 HACQL--CSQTFAQAGELTQHLLDHQHQTSFVCDVCCKVFTDAYDLKTH---RMGHSAFV 222
Query: 339 CKFPGCDKRFTQSSNLSAHEKSH 361
C C+ F ++L H SH
Sbjct: 223 CGV--CEASFNDEADLKKHMLSH 285
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQL-VHTGERPFRCEIC 314
C + F D LKKHM H G +VC V C + F + L +H +H+G F C +C
Sbjct: 316 CERTFNDKGDLKKHMSIHSGLSTFVCAV--CQRSFTEEKDLNKHMSEIHSGLSMFACGMC 489
Query: 315 GKSFSLDFNLKTHLRTHTGEKPYVC 339
F+ + KT H+ + C
Sbjct: 490 DMRFNEEKI*KT**SIHSSRTTFAC 564
>11951
Length = 508
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Frame = -2
Query: 250 YKCKQEDCGKVFLDSSALKKH-MLTHGAKM-YVCQVEGCGKRFVDNSKLRRHQLVHTGER 307
Y C+Q CG F S +H + HGA YVCQ CG+RF +L+RH + HTG
Sbjct: 321 YTCQQ--CGLGFKHLSTYARHKRVEHGADTPYVCQ--DCGERFPVKKELQRHMISHTGFN 154
Query: 308 PFRCEICGKSFSLDFNLKTHL-RTHTGEKPYVCKFPGCDKRFTQSSNLSAH 357
PF+C C KSF L+ +K H H G + +VC P C +F + +L H
Sbjct: 153 PFQCPACSKSFGLERTMKEHYDFVHQGIQKFVC--PNCGNKFPRKRSLKRH 7
>13883
Length = 1055
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Frame = +3
Query: 248 KEYKCKQEDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE 306
K + C + CGK F + L+ H TH AK C+ CGK FV S +R H+L HT E
Sbjct: 36 KRFGC--DICGKHFTQKAHLQSHHATHTKAKAGACKY--CGKHFVRLSDMREHELTHTHE 203
Query: 307 RPFRCEICGKSFSLDFNLKTHLRT-HTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
+ CE C K+F L+ H+RT H E+ Y+C+ C K F L+ H +S
Sbjct: 204 KALSCEQCSKTFQKPKLLRRHMRTVHENERNYMCE--RCSKTFHNKYKLTRHGQS 362
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLS 355
L H +H+G + F C+ICGK F+ +L++H THT K CK+ C K F + S++
Sbjct: 3 LASHLNIHSGIKRFGCDICGKHFTQKAHLQSHHATHTKAKAGACKY--CGKHFVRLSDMR 176
Query: 356 AHEKSH 361
HE +H
Sbjct: 177 EHELTH 194
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLT--HGAKMYVCQVEGCGKRFVDNSKLRRH 299
T +K C+Q C K F L++HM T + Y+C E C K F + KL RH
Sbjct: 195 THEKALSCEQ--CSKTFQKPKLLRRHMRTVHENERNYMC--ERCSKTFHNKYKLTRH 353
>10559
Length = 267
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -1
Query: 267 LKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLK 325
LK+H+L H G K + C V C KRF+ +S L+ H+L HTGE+ F CE CG +F+ +LK
Sbjct: 252 LKQHILIHSGNKSFECDV--CSKRFLRSSHLKDHKLTHTGEKLFICEECGTAFTRASSLK 79
Query: 326 THLRTHTGEKPYVC 339
+H + H +KP+ C
Sbjct: 78 SHKQLHAEKKPFEC 37
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = -1
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLS 355
L++H L+H+G + F C++C K F +LK H THTGEK ++C+ C FT++S+L
Sbjct: 252 LKQHILIHSGNKSFECDVCSKRFLRSSHLKDHKLTHTGEKLFICE--ECGTAFTRASSLK 79
Query: 356 AHEKSH 361
+H++ H
Sbjct: 78 SHKQLH 61
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = -1
Query: 248 KEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE 306
K ++C + C K FL SS LK H LTH G K+++C E CG F S L+ H+ +H +
Sbjct: 219 KSFEC--DVCSKRFLRSSHLKDHKLTHTGEKLFIC--EECGTAFTRASSLKSHKQLHAEK 52
Query: 307 RPFRCEIC 314
+PF C+IC
Sbjct: 51 KPFECDIC 28
>06644
Length = 909
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Frame = +2
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
+ + CQV C K + + L +H V RP++C+IC K+F +LK H R HTGE+P
Sbjct: 461 RQHTCQV--CKKSYRLKASLDKHLKVPCELRPYKCDICQKAFKRPDHLKAHCRMHTGERP 634
Query: 337 YVCKFPGCDKRFTQSSNLSAHEKSHYV 363
Y+C C K F Q ++L H + +V
Sbjct: 635 YLCSL--CGKTFRQKNHLQRHSERKHV 709
>22587
Length = 373
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%)
Frame = +1
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
K +VC V CGK F+ L+ H++ H ++PF C++C +SF+ +++LK H HTG K
Sbjct: 43 KSFVCDV--CGKAFLTAGHLKSHKVTHLEKKPFACDLCDRSFAREYSLKGHRAAHTGNKQ 216
Query: 337 YVCKFPGCDKRFTQSSNLSAHEKSH 361
++C C ++ S++L H + H
Sbjct: 217 FICDL--CGNTYSFSASLMRHRRIH 285
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +1
Query: 244 VTVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKM-YVCQVEGCGKRFVDNSKLRRHQLV 302
+ V+K + C + CGK FL + LK H +TH K + C + C + F L+ H+
Sbjct: 31 ILVKKSFVC--DVCGKAFLTAGHLKSHKVTHLEKKPFACDL--CDRSFAREYSLKGHRAA 198
Query: 303 HTGERPFRCEICGKSFSLDFNLKTHLRTH 331
HTG + F C++CG ++S +L H R H
Sbjct: 199 HTGNKQFICDLCGNTYSFSASLMRHRRIH 285
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
++ F C++CGK+F +LK+H TH +KP+ C CD+ F + +L H +H
Sbjct: 40 KKSFVCDVCGKAFLTAGHLKSHKVTHLEKKPFACDL--CDRSFAREYSLKGHRAAH 201
>04425
Length = 703
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCD 345
C F L++H +HTG +PF CE+C K+F+ L+ H+ H+G+KP+ C C
Sbjct: 16 CFXHFAWEKGLKQHXFIHTGRKPFVCEVCSKTFTESKTLRRHMAIHSGKKPFECDM--CG 189
Query: 346 KRFTQSSNLSAHEKSH 361
++FT SN+ H +H
Sbjct: 190 RKFTWQSNMIQHRFTH 237
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C F LK+H H G K +VC+V C K F ++ LRRH +H+G++PF C++CG
Sbjct: 16 CFXHFAWEKGLKQHXFIHTGRKPFVCEV--CSKTFTESKTLRRHMAIHSGKKPFECDMCG 189
Query: 316 KSFSLDFNLKTHLRTHT 332
+ F+ N+ H TH
Sbjct: 190 RKFTWQSNMIQHRFTHI 240
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = +1
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
F C+IC F+ + LK H HTG KP+VC+ C K FT+S L H H
Sbjct: 1 FECDICFXHFAWEKGLKQHXFIHTGRKPFVCEV--CSKTFTESKTLRRHMAIH 153
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T +K + C E C K F +S L++HM H G K + C + CG++F S + +H+ H
Sbjct: 70 TGRKPFVC--EVCSKTFTESKTLRRHMAIHSGKKPFECDM--CGRKFTWQSNMIQHRFTH 237
>24734
Length = 863
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 28/144 (19%)
Frame = -2
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHG-AKMY------------------------ 279
T QK + C + C K F LKKHML H K Y
Sbjct: 784 TGQKSFVC--DVCEKXFTLKHHLKKHMLVHTEQKSYTS*CV**RFCTEATFEETQVGPF* 611
Query: 280 ---VCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
VC V C K F + LR H+ +HTG++PF C++C KSF+ +L TH HTGEKP
Sbjct: 610 HQTVCHV--CNKSFKQKNCLRAHK*IHTGKKPFVCDVCDKSFTQKHSLMTHKLNHTGEKP 437
Query: 337 YVCKFPGCDKRFTQSSNLSAHEKS 360
+ + C+ F+ S + H ++
Sbjct: 436 F--GWDVCEASFSLKSTFNXHXQT 371
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 28/133 (21%)
Frame = -2
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGER-------- 307
C K F+ L++H L H G K +VC V C K F L++H LVHT ++
Sbjct: 838 CEKGFIQKLKLEEHKLIHTGQKSFVCDV--CEKXFTLKHHLKKHMLVHTEQKSYTS*CV* 665
Query: 308 ---------------PF----RCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRF 348
PF C +C KSF L+ H HTG+KP+VC CDK F
Sbjct: 664 *RFCTEATFEETQVGPF*HQTVCHVCNKSFKQKNCLRAHK*IHTGKKPFVCDV--CDKSF 491
Query: 349 TQSSNLSAHEKSH 361
TQ +L H+ +H
Sbjct: 490 TQKHSLMTHKLNH 452
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = -2
Query: 280 VCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPY 337
+C C K F+ KL H+L+HTG++ F C++C K F+L +LK H+ HT +K Y
Sbjct: 856 ICVCM*CEKGFIQKLKLEEHKLIHTGQKSFVCDVCEKXFTLKHHLKKHMLVHTEQKSY 683
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEK 335
L + +L HT PF C+ C K F L NLK H HT ++
Sbjct: 153 LIQXKLTHTDIXPFXCDXCXKRFRLKGNLKAHYVIHTSQQ 34
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -2
Query: 311 CEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
C C K F L+ H HTG+K +VC C+K FT +L H H
Sbjct: 847 CM*CEKGFIQKLKLEEHKLIHTGQKSFVCDV--CEKXFTLKHHLKKHMLVH 701
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 275 GAKMYVCQVEGCGKRFVDNSKLRRHQLVHT-GERPFRCEICGKSFSLDFNLKTHLRTH 331
G K +VC V F+ S L H+ H+ ++ F C++C K F +L +H +TH
Sbjct: 368 GEKPFVCDVG-----FIRKSNLTEHKSSHSDXQKLFVCDVCNKRFKHKCSLTSHKQTH 210
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 332 TGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+GEKP+VC D F + SNL+ H+ SH
Sbjct: 371 SGEKPFVC-----DVGFIRKSNLTEHKSSH 297
>33756
Length = 780
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Frame = +3
Query: 255 EDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE--RPFRC 311
+ CGK F +HM+ H G + C +E CGK+F N++L+ H + H + F C
Sbjct: 12 DXCGKAFAKKIHFHRHMMVHAGGRPNTC-LE-CGKQFEHNTQLQSHMVXHRNDDRSRFAC 185
Query: 312 EICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVK 364
+ C SFS L+ H TH PYVC C K F + H K H +
Sbjct: 186 QACSDSFSSQLELEAHAHTHGKSPPYVCGL--CGKLFAEQRYFRQHMKRHTAR 338
>33238
Length = 306
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +2
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCD 345
C K F L H+L+H+ ++PF C++C K F+ +L +H H+G+KP+VC C+
Sbjct: 11 CDKGFDYVESLNSHKLIHSSDKPFVCDVCSKGFACVESLNSHKLMHSGDKPFVCDV--CN 184
Query: 346 KRFTQSSNLSAHEKSH 361
RF Q S+L H+ H
Sbjct: 185 MRFKQISSLKKHQLIH 232
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 CGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F +L H L H + K +VC V C K F L H+L+H+G++PF C++C
Sbjct: 11 CDKGFDYVESLNSHKLIHSSDKPFVCDV--CSKGFACVESLNSHKLMHSGDKPFVCDVCN 184
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKF 341
F +LK H H+ ++ +VCK
Sbjct: 185 MRFKQISSLKKHQLIHSDQESFVCKL 262
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
C K F +L H L H G K +VC V C RF S L++HQL+H+ + F C++C
Sbjct: 95 CSKGFACVESLNSHKLMHSGDKPFVCDV--CNMRFKQISSLKKHQLIHSDQESFVCKLC 265
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 311 CEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
C++C K F +L +H H+ +KP+VC C K F +L++H+ H
Sbjct: 2 CDMCDKGFDYVESLNSHKLIHSSDKPFVCDV--CSKGFACVESLNSHKLMH 148
>18567
Length = 437
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = -3
Query: 255 EDCGKVFLDSSALKKHM-LTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
E C V D + K +T + +VC V C K F L +H+ +HTG++PF C++
Sbjct: 273 EPCPTVHQDPGSNKPATSVTATPRPFVCDV--CEKGFTLRENLIKHKFIHTGQKPFVCDV 100
Query: 314 CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRF 348
C KSF+ +NL H H+ +K YVC C+K F
Sbjct: 99 CHKSFTQKYNLDQHKLIHSDQKCYVCDV--CNKSF 1
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Frame = -3
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
V RPF C++C K F+L NL H HTG+KP+VC C K FTQ NL H+ H
Sbjct: 219 VTATPRPFVCDVCEKGFTLRENLIKHKFIHTGQKPFVCDV--CHKSFTQKYNLDQHKLIH 46
>37309
Length = 657
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = +2
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAH 357
R +RCE CGK F + +NLKTHLR HTGEKP+ C+ C F Q ++L H
Sbjct: 209 REYRCEYCGKQFGMSWNLKTHLRVHTGEKPFACRL--CVAMFKQKAHLLKH 355
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +2
Query: 282 QVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHL 328
+ E CGK+F + L+ H VHTGE+PF C +C F +L HL
Sbjct: 218 RCEYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHL 358
>33506
Length = 257
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +2
Query: 287 GKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDK 346
K F +S L++H+ VHT E+PF+C++C +SF +LK H+ +HT + VC CDK
Sbjct: 14 NKEFTQSSTLKQHKKVHTDEKPFKCDLCSQSFKWPKSLKQHILSHTRKNSQVCDV--CDK 187
Query: 347 RFTQSSNLSAHEKSH 361
RF + L H +H
Sbjct: 188 RFRKKERLLEHRLTH 232
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAK-MYVCQVEGCGKRFVDNSKLRRHQLVH 303
T +K +KC + C + F +LK+H+L+H K VC V C KRF +L H+L H
Sbjct: 65 TDEKPFKC--DLCSQSFKWPKSLKQHILSHTRKNSQVCDV--CDKRFRKKERLLEHRLTH 232
Query: 304 TGER 307
E+
Sbjct: 233 GSEQ 244
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 258 GKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGK 316
K F SS LK+H H K + C + C + F L++H L HT + C++C K
Sbjct: 14 NKEFTQSSTLKQHKKVHTDEKPFKCDL--CSQSFKWPKSLKQHILSHTRKNSQVCDVCDK 187
Query: 317 SFSLDFNLKTHLRTHTGEK 335
F L H TH E+
Sbjct: 188 RFRKKERLLEHRLTHGSEQ 244
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 311 CEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
C++ K F+ LK H + HT EKP+ C C + F +L H SH
Sbjct: 2 CDVYNKEFTQSSTLKQHKKVHTDEKPFKCDL--CSQSFKWPKSLKQHILSH 148
>07617
Length = 677
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Frame = +2
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C F S LK+HM TH G K + C + CG F S L+RH H G+RP +C CG
Sbjct: 275 CDATFNRPSHLKRHMQTHTGEKPHECNL--CGHTFNQLSHLKRHMQSHAGDRPNKCGECG 448
Query: 316 KSFSLDFNLKTHLRTHTGE-------KPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+F LK H+R H + + YVC+ C +FT S +L H + H
Sbjct: 449 AAFIELDKLKRHMRVHLSQLSGQGQDQAYVCE--ECGAKFTMSRHLKNHMRVH 601
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Frame = +2
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKH--MLTHGAKMYV---CQVEGCGKRFVDNSKLRRH 299
T + Y C DC VF SA +H + T G + V C V C F S L+RH
Sbjct: 149 TGGRXYVC--PDCKAVFGWYSAFTRHRKLHTEGPESIVRNKCSV--CDATFNRPSHLKRH 316
Query: 300 QLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
HTGE+P C +CG +F+ +LK H+++H G++P C C F + L H +
Sbjct: 317 MQTHTGEKPHECNLCGHTFNQLSHLKRHMQSHAGDRPNKC--GECGAAFIELDKLKRHMR 490
Query: 360 SH 361
H
Sbjct: 491 VH 496
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = +2
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T +K ++C CG F S LK+HM +H G + C CG F++ KL+RH VH
Sbjct: 329 TGEKPHECNL--CGHTFNQLSHLKRHMQSHAGDRPNKCGE--CGAAFIELDKLKRHMRVH 496
Query: 304 TGE-------RPFRCEICGKSFSLDFNLKTHLRTH 331
+ + + CE CG F++ +LK H+R H
Sbjct: 497 LSQLSGQGQDQAYVCEECGAKFTMSRHLKNHMRVH 601
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%)
Frame = +2
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCD 345
CG F LR H H +C+ C F+ L+ H++ HTG + YVC P C
Sbjct: 11 CGAAFTKAHHLRDHVTSHKVGGLHKCDQCDAVFNNANQLRLHIKGHTGGRXYVC--PDCK 184
Query: 346 KRFTQSSNLSAHEKSH 361
F S + H K H
Sbjct: 185 AVFGWYSAFTRHRKLH 232
>10938
Length = 1051
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%)
Frame = -1
Query: 262 LDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLD 321
L ++ L + ++VC+ C K F L+RH L+H ++PF C++C K F+
Sbjct: 1018 LGTNQLPTDCVCMCVPVFVCEC*-CQKSFTQQQNLKRHMLIHADKKPFVCDVCNKGFNRK 842
Query: 322 FNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+L H HTG+K VC C+ FT++S L H+ H
Sbjct: 841 SSLNAHKSNHTGQKRCVCDV--CNASFTRNSGLKKHKLIH 728
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = -1
Query: 257 CGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F LK+HML H K +VC V C K F S L H+ HTG++ C++C
Sbjct: 949 CQKSFTQQQNLKRHMLIHADKKPFVCDV--CNKGFNRKSSLNAHKSNHTGQKRCVCDVCN 776
Query: 316 KSFSLDFNLKTHLRTHTGEKPY---VCK 340
SF+ + LK H HTG+ + VCK
Sbjct: 775 ASFTRNSGLKKHKLIHTGQ*YFLGGVCK 692
>07656
Length = 1039
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 267 LKKHMLTHGAKM-YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLK 325
LKKH LTH K YVC V C K F NS L +H+L H ++ F C++ KSF +LK
Sbjct: 635 LKKHKLTHTDKKPYVCDV--CSKSFRLNSNLTQHKLTHADQKSFVCDVYKKSFKRSDSLK 808
Query: 326 THLRTHTGEKPYVC 339
H THT K +VC
Sbjct: 809 RHKLTHTDAKQFVC 850
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +2
Query: 290 FVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFT 349
F N +L++H+L HT ++P+ C++C KSF L+ NL H TH +K +VC K F
Sbjct: 617 FNQNCQLKKHKLTHTDKKPYVCDVCSKSFRLNSNLTQHKLTHADQKSFVCDVYK--KSFK 790
Query: 350 QSSNLSAHEKSH 361
+S +L H+ +H
Sbjct: 791 RSDSLKRHKLTH 826
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 239 KEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLR 297
K K T +K Y C + C K F +S L +H LTH K +VC V K F + L+
Sbjct: 641 KHKLTHTDKKPYVC--DVCSKSFRLNSNLTQHKLTHADQKSFVCDVYK--KSFKRSDSLK 808
Query: 298 RHQLVHTGERPFRCE 312
RH+L HT + F C+
Sbjct: 809 RHKLTHTDAKQFVCD 853
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 296 LRRHQLVHTGERPFRCEICGKSF 318
L++H L+HTG +PF C +C + F
Sbjct: 378 LKQHILIHTGYKPFVCYVCHQGF 446
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 31/83 (37%)
Frame = +3
Query: 288 KRFVDNSKLRRHQLVHTGERPFRCEICGKSFS--------------LDFNLKT------- 326
K F S L +H+L HT ++ F C +C KS + + + L T
Sbjct: 177 KSFRQLSSLTQHKLTHTDQKSFVCAVCIKSSTRKT*FEKTQADSQVVSYCLATCV*SV** 356
Query: 327 ----------HLRTHTGEKPYVC 339
H+ HTG KP+VC
Sbjct: 357 EI*SKPLLKQHILIHTGYKPFVC 425
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 29/79 (36%)
Frame = +3
Query: 267 LKKHMLTH-GAKMYVCQVEGCG----------------------------KRFVDNSKLR 297
LK+H+L H G K +VC V G K F S+L
Sbjct: 378 LKQHILIHTGYKPFVCYVCHQGFINTCSIXLKKAQVD*Y*H*TVCVPCVYKSFKQTSRLT 557
Query: 298 RHQLVHTGERPFRCEICGK 316
H+L HT + F C++C +
Sbjct: 558 EHKLTHTDVKQFVCDVCXR 614
>17968
Length = 765
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = +1
Query: 303 HTGERPFRCEI--CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
HTGE+PF CE CG++F+ H+RTHTGEK + C C+++F +S +L+ H +
Sbjct: 208 HTGEKPFSCEWENCGRTFARSDERSRHMRTHTGEKRFPCH--SCERKFMRSDHLAKHMRR 381
Query: 361 HYVKEK 366
H +K+K
Sbjct: 382 HTLKDK 399
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 275 GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHT 332
G K + C+ E CG+ F + + RH HTGE+ F C C + F +L H+R HT
Sbjct: 214 GEKPFSCEWENCGRTFARSDERSRHMRTHTGEKRFPCHSCERKFMRSDHLAKHMRRHT 387
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T +K + C+ E+CG+ F S +HM TH G K + C C ++F+ + L +H H
Sbjct: 211 TGEKPFSCEWENCGRTFARSDERSRHMRTHTGEKRFPCH--SCERKFMRSDHLAKHMRRH 384
Query: 304 T 304
T
Sbjct: 385 T 387
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 331 HTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKEKR 367
HTGEKP+ C++ C + F +S S H ++H EKR
Sbjct: 208 HTGEKPFSCEWENCGRTFARSDERSRHMRTH-TGEKR 315
>37460
Length = 243
Score = 57.4 bits (137), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = +1
Query: 301 LVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
L+HTG + F C +C KSF+ +L +H+ TH+G+KP+ C C+K FT L H+
Sbjct: 31 LIHTGHKSFMCHVCDKSFTQRTHLNSHILTHSGQKPFACDI--CNKSFTLKCTLDKHKLI 204
Query: 361 H 361
H
Sbjct: 205 H 207
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Frame = +1
Query: 269 KHMLTH----GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNL 324
K++LT+ G K ++C V C K F + L H L H+G++PF C+IC KSF+L L
Sbjct: 13 KYLLTNLIHTGHKSFMCHV--CDKSFTQRTHLNSHILTHSGQKPFACDICNKSFTLKCTL 186
Query: 325 KTHLRTHT--GEKPYVC 339
H HT G+ +VC
Sbjct: 187 DKHKLIHTSPGKTLFVC 237
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T K + C C K F + L H+LTH G K + C + C K F L +H+L+H
Sbjct: 40 TGHKSFMCHV--CDKSFTQRTHLNSHILTHSGQKPFACDI--CNKSFTLKCTLDKHKLIH 207
Query: 304 T--GERPFRCEI 313
T G+ F C++
Sbjct: 208 TSPGKTLFVCDV 243
>31863
Length = 880
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Frame = +3
Query: 258 GKVFLDSSALKKHMLTH--GAKMYVCQ---------------------------VEGCGK 288
G V DS L+ H+ H G + YVC+ C
Sbjct: 459 GPVSFDSVQLRDHIAYHHRGVQNYVCKYCQKGFNCRPTMVRHERKVHTKYFPHKCNYCSL 638
Query: 289 RFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRF 348
F + SKL H++ HTG P++C++CGK F+ ++ H H G KP+ C C K +
Sbjct: 639 GFPEKSKLVAHEMTHTGTSPYKCDVCGKYFTTGTAMRDHKNLHLGIKPFECGV--CGKSY 812
Query: 349 TQSSNLSAHEK 359
++ N+ H K
Sbjct: 813 LKNWNMQRHMK 845
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Frame = +1
Query: 257 CGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRH-QLVHTGER--PFRCEI 313
CGKV+ S L+ H H + CGK ++ L+RH +VH G + F+C+
Sbjct: 274 CGKVYASKSGLRSHAKAHANPIPKKPCPHCGKIYISKVHLKRHISVVHLGVKDYKFKCDQ 453
Query: 314 CGKSFSL-------DFNLKTH----LRTHTGEKPYVCKFP--GCDKRFTQSSNLSAHEKS 360
C F L + T + + ++ + P G + ++TQ+++L+ +
Sbjct: 454 CTAQFLLTASSCVTTLPITTEGCKIMSANIAKRALIAGPPWFGMNAKYTQNTSLTNATTA 633
Query: 361 HYVKEK 366
H+V +K
Sbjct: 634 HWVFQK 651
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 311 CEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAH 357
C++CGK ++ L++H + H P P C K + +L H
Sbjct: 265 CDVCGKVYASKSGLRSHAKAHANPIPKK-PCPHCGKIYISKVHLKRH 402
>12529
Length = 702
Score = 39.7 bits (91), Expect(2) = 1e-08, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = -1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQ 300
T +K ++C + CGK F+ ++LK HMLTH + C + CG F +L+ HQ
Sbjct: 378 TGEKPHRCDK--CGKTFIQKNSLKLHMLTHHCTDHTCDL--CGSHFSSYYQLKDHQ 223
Score = 37.0 bits (84), Expect(2) = 1e-08, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = -2
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
F+C+ CGK F K H TH G KP+ C C K F +L+ H H
Sbjct: 167 FKCQQCGKVFPTVHGRKKHEATHLGLKPFKCDL--CPKTFATKRHLALHTDRH 15
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = -1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTH 331
CGKRFV +H HTGE+P RC+ CGK+F +LK H+ TH
Sbjct: 432 CGKRFVVAKHCLQHIQGHTGEKPHRCDKCGKTFIQKNSLKLHMLTH 295
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = -1
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHY 362
R F C CGK F + + H++ HTGEKP+ C C K F Q ++L H +H+
Sbjct: 453 RRFACTFCGKRFVVAKHCLQHIQGHTGEKPHRCD--KCGKTFIQKNSLKLHMLTHH 292
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%)
Frame = -2
Query: 230 LKPRTTPKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKR 289
++P TP T + + +KC+Q CGKVF HG K
Sbjct: 227 IRPPCTPFLPRLTLILRRTAFKCQQ--CGKVFPT---------VHGRK------------ 117
Query: 290 FVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTG 333
+H+ H G +PF+C++C K+F+ +L H H G
Sbjct: 116 --------KHEATHLGLKPFKCDLCPKTFATKRHLALHTDRHKG 9
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
CGK F+ + +H+ H G K + C + CGK F+ + L+ H L H C++CG
Sbjct: 432 CGKRFVVAKHCLQHIQGHTGEKPHRC--DKCGKTFIQKNSLKLHMLTHHCT-DHTCDLCG 262
Query: 316 KSFSLDFNLKTHLRT 330
FS + LK H T
Sbjct: 261 SHFSSYYQLKDHQTT 217
>25672
Length = 437
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Frame = -3
Query: 249 EYKCKQEDCGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGER 307
+Y+CK CGK F S+ L+KH+ +H + Y C C KRF L+ H H +
Sbjct: 435 KYECK--ICGKKFFTSTVLRKHIESHSDQRNYEC--GQCLKRFKTFRTLQSHVGTHQSVK 268
Query: 308 PFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYV 363
F C++C K++S NL H R H G +PY C P C + +L AH S ++
Sbjct: 267 RFLCDVCFKTYSTQCNLDLHKRVHEGGRPYQC--PICLHGSKELDHLMAHVGSEHL 106
>22280
Length = 676
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCD 345
C +FVD L+ H HTGE+P+RC C F+ NL H +TH +P P C
Sbjct: 17 CDAKFVDPHSLKLHVRTHTGEKPYRCSECEAQFTCASNLTKHTKTHHKPRPGC---PHCH 187
Query: 346 KRFTQSSNLSAHEKSH 361
+ F+ +++L H +SH
Sbjct: 188 RHFSSTASLHVHMRSH 235
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +2
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHT 304
T +K Y+C +C F +S L KH TH C C + F + L H H
Sbjct: 71 TGEKPYRC--SECEAQFTCASNLTKHTKTHHKPRPGC--PHCHRHFSSTASLHVHMRSHL 238
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAH-EKSHYV 363
G +P RC C +SF+ LKTH+ TH EK + C + C RF L H ++SH
Sbjct: 239 GFKPHRCNQCQRSFTALRYLKTHMHTHGQEKAHACSW--CKGRFISHFQLRRHIKRSHPD 412
Query: 364 KEKR 367
K KR
Sbjct: 413 KFKR 424
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +2
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHY 362
F C C F +LK H+RTHTGEKPY C C+ +FT +SNL+ H K+H+
Sbjct: 2 FACPHCDAKFVDPHSLKLHVRTHTGEKPYRCS--ECEAQFTCASNLTKHTKTHH 157
>08848
Length = 587
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%)
Frame = -3
Query: 271 MLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRT 330
+LT G ++C V C K F ++ R+H HTG RP++C CG SFS + H
Sbjct: 495 ILTKGGNKFLCSV--CHKSFSLSAACRQHIFCHTGTRPYKCSDCGASFSRKACARRHTHI 322
Query: 331 HTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
H +K + C+ C RF L+ H H
Sbjct: 321 HQRQKRHTCR--ECGSRFQTKPRLALHVDEH 235
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -3
Query: 300 QLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
+++ G F C +C KSFSL + H+ HTG +PY C C F++ + H
Sbjct: 498 KILTKGGNKFLCSVCHKSFSLSAACRQHIFCHTGTRPYKCS--DCGASFSRKACARRHTH 325
Query: 360 SH 361
H
Sbjct: 324 IH 319
>33739
Length = 246
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Frame = -2
Query: 288 KRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKR 347
K F L++H+L+HTG + F C++C K F+ +L TH HTG+K +VC C+K
Sbjct: 188 KGFTQKCDLKKHKLIHTGNKSFECDVCEKGFTKKGSLMTHKLIHTGQKAFVCDV--CEKG 15
Query: 348 FT 349
FT
Sbjct: 14 FT 9
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -2
Query: 259 KVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKS 317
K F LKKH L H G K + C V C K F L H+L+HTG++ F C++C K
Sbjct: 188 KGFTQKCDLKKHKLIHTGNKSFECDV--CEKGFTKKGSLMTHKLIHTGQKAFVCDVCEKG 15
Query: 318 FSL 320
F+L
Sbjct: 14 FTL 6
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
K F+ +LK H HTG K + C C+K FT+ +L H+ H
Sbjct: 188 KGFTQKCDLKKHKLIHTGNKSFECDV--CEKGFTKKGSLMTHKLIH 57
>04451
Length = 2163
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Frame = -3
Query: 237 KSKEKTQVTV-------QKEYKCKQEDCGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGK 288
+ K +TQ+T +K + C + CG F ALK HM+TH A K ++C + CG
Sbjct: 391 RFKTRTQLTTHLPKHRTEKPFVC--QICGNGFKWKHALKSHMVTHSATKDHLCDI--CGF 224
Query: 289 RFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDF--NLKTHLRTHTGEKPYVCKFPGCDK 346
S+L+ H+L+HTG+ F+C G +F NLK H+ THT EK + C+ C +
Sbjct: 223 ATAHKSQLKAHRLIHTGD-TFKCPEPGCTFEATKRQNLKYHMVTHTQEKAHQCEV--CGQ 53
Query: 347 RFTQSSNLSAHEKSH 361
F+ N+ H H
Sbjct: 52 AFSLIKNMRRHMLLH 8
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Frame = -3
Query: 279 YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYV 338
Y C C RF ++L H H E+PF C+ICG F LK+H+ TH+ K ++
Sbjct: 415 YFCH--ACDMRFKTRTQLTTHLPKHRTEKPFVCQICGNGFKWKHALKSHMVTHSATKDHL 242
Query: 339 CKFPGCDKRFTQSSNLSAHEKSH 361
C C S L AH H
Sbjct: 241 CDI--CGFATAHKSQLKAHRLIH 179
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = -3
Query: 257 CGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C F + L H+ H K +VCQ+ CG F L+ H + H+ + C+ICG
Sbjct: 400 CDMRFKTRTQLTTHLPKHRTEKPFVCQI--CGNGFKWKHALKSHMVTHSATKDHLCDICG 227
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+ + LK H HTG+ + C PGC T+ NL H +H
Sbjct: 226 FATAHKSQLKAHRLIHTGDT-FKCPEPGCTFEATKRQNLKYHMVTH 92
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 323 NLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
N + HL+ H PY C CD RF + L+ H H
Sbjct: 457 NFENHLQRHAHLLPYFCH--ACDMRFKTRTQLTTHLPKH 347
>26440
Length = 434
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +2
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRH-QLVHTGERPFRCEIC 314
C K + S L+ H+ TH G K Y C++ CG + L +H + VH RP +C+ C
Sbjct: 2 CQKGWTCESELEAHLRTHTGEKPYKCKL--CGVALKRKANLEQHIRAVHMQHRPHKCDTC 175
Query: 315 GKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNL 354
G++F+ +LK H H G KP+ C C K FTQ L
Sbjct: 176 GRTFTEARSLKDHKLIHLGAKPHRCGV--CGKAFTQLGTL 289
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +1
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKF 341
+HTG +P C +C K F+ LK H R HTGEKPYVC++
Sbjct: 304 IHTGLKPHECGVCSKGFNDPVALKRHARLHTGEKPYVCQY 423
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +2
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLR-THTGEKPYVCKFPGC 344
C K + S+L H HTGE+P++C++CG + NL+ H+R H +P+ C C
Sbjct: 2 CQKGWTCESELEAHLRTHTGEKPYKCKLCGVALKRKANLEQHIRAVHMQHRPHKCDT--C 175
Query: 345 DKRFTQSSNLSAHEKSH 361
+ FT++ +L H+ H
Sbjct: 176 GRTFTEARSLKDHKLIH 226
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Frame = +2
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHT 304
T +K YKCK CG + L++H+ + + + CG+ F + L+ H+L+H
Sbjct: 56 TGEKPYKCKL--CGVALKRKANLEQHIRAVHMQHRPHKCDTCGRTFTEARSLKDHKLIHL 229
Query: 305 GERPFRCEICGKSFSLDFNLK 325
G +P RC +CGK+F+ LK
Sbjct: 230 GAKPHRCGVCGKAFTQLGTLK 292
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 275 GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
G K + C V C K F D L+RH +HTGE+P+ C+ C
Sbjct: 313 GLKPHECGV--CSKGFNDPVALKRHARLHTGEKPYVCQYC 426
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQ 282
C K F D ALK+H H G K YVCQ
Sbjct: 340 CSKGFNDPVALKRHARLHTGEKPYVCQ 420
>22834
Length = 1866
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = +3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLS 355
LRRH+L HT ++PF C++C F+L L+ H H+ K +VC C+K F +L
Sbjct: 285 LRRHELTHTDQKPFVCDVCNARFALKITLEDHKVIHSDIKQFVCDV--CNKSFKLKRSLR 458
Query: 356 AHEKSHYV 363
H K+H +
Sbjct: 459 RHRKTHVL 482
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%)
Frame = +2
Query: 255 EDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
E C K F D+ LKKHML H K F++ + +L T R F C++C
Sbjct: 509 EVCNKSFCDNCYLKKHMLNHSGH----------KSFINLVMI*NDKLTRTDIRQFGCDVC 658
Query: 315 GKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHE 358
+ F NL +H TH+ KP+ C+ F S+L+ H+
Sbjct: 659 NRGFKYRSNLNSHKLTHSD*KPFF--L*LCNMSFA*RSHLTVHK 784
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 17/68 (25%)
Frame = +2
Query: 311 CEICGKSFSLDFNLKTHLRTHTGEKPYV--------------CKFPGCD---KRFTQSSN 353
CE+C KSF + LK H+ H+G K ++ + GCD + F SN
Sbjct: 506 CEVCNKSFCDNCYLKKHMLNHSGHKSFINLVMI*NDKLTRTDIRQFGCDVCNRGFKYRSN 685
Query: 354 LSAHEKSH 361
L++H+ +H
Sbjct: 686 LNSHKLTH 709
>20589
Length = 843
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Frame = +1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYV 338
C K F +S L+ H HTGERPF+C ICG FS NLK H H + P++
Sbjct: 652 CHKVFGSDSALQIHVRSHTGERPFKCNICGNRFSTKGNLKVHFERHKAKYPHI 810
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 308 PF---RCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVK 364
PF +C C K F D L+ H+R+HTGE+P+ C C RF+ NL H + H K
Sbjct: 625 PFFKHKCRFCHKVFGSDSALQIHVRSHTGERPFKCNI--CGNRFSTKGNLKVHFERHKAK 798
>33882
Length = 668
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +1
Query: 298 RHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYV 338
RH LVH+GERPFRC+IC SF+ + N+ H R H E P V
Sbjct: 298 RHMLVHSGERPFRCKICDMSFTTNGNMHRHSRIHKKEDPRV 420
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 311 CEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKEKR 367
C IC K S +L H+ H+GE+P+ CK CD FT + N+ H + H ++ R
Sbjct: 253 CTICSKQLSSQSSLDRHMLVHSGERPFRCKI--CDMSFTTNGNMHRHSRIHKKEDPR 417
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 269 KHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERP 308
+HML H G + + C++ C F N + RH +H E P
Sbjct: 298 RHMLVHSGERPFRCKI--CDMSFTTNGNMHRHSRIHKKEDP 414
>25021
Length = 817
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = -2
Query: 304 TGERPFRCEI--CGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
GE+PF CE CG++F+ H+RTHTGEK + C C+++F +S +L+ H + H
Sbjct: 639 AGEKPFSCEWENCGRTFARSDERSRHMRTHTGEKRFPCH--SCERKFMRSDHLAKHMRRH 466
Query: 362 YVKEK 366
+K+K
Sbjct: 465 TLKDK 451
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = -2
Query: 272 LTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTH 331
L G K + C+ E CG+ F + + RH HTGE+ F C C + F +L H+R H
Sbjct: 645 LVAGEKPFSCEWENCGRTFARSDERSRHMRTHTGEKRFPCHSCERKFMRSDHLAKHMRRH 466
Query: 332 T 332
T
Sbjct: 465 T 463
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -2
Query: 240 EKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRR 298
+ T V +K + C+ E+CG+ F S +HM TH G K + C C ++F+ + L +
Sbjct: 654 DSTLVAGEKPFSCEWENCGRTFARSDERSRHMRTHTGEKRFPCH--SCERKFMRSDHLAK 481
Query: 299 HQLVHT 304
H HT
Sbjct: 480 HMRRHT 463
>13093
Length = 941
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Frame = +1
Query: 279 YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEK 335
+VC+ E C KRF + +L RH+ HTGE+ F+C +C K F +L H++ H +K
Sbjct: 7 FVCKWENCDKRFSRSDELSRHKRTHTGEKKFQCGVCSKKFMRSDHLSKHVKRHNKDK 177
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 307 RPFRC--EICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
RPF C E C K FS L H RTHTGEK + C C K+F +S +LS H K H
Sbjct: 1 RPFVCKWENCDKRFSRSDELSRHKRTHTGEKKFQCGV--CSKKFMRSDHLSKHVKRH 165
>13351
Length = 869
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = -3
Query: 242 TQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQL 301
+ +T + Y C E C + F S L KH + H + V + + + F + S+L +H++
Sbjct: 747 SDMTAARPYVC--EVCCQTFTRLSELTKHKVLHNEEKPV-ERDMYSEAFGNCSQLTKHKV 577
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRT-HTGEKPYVC 339
+H GE+PF+C IC +F+ L H H+ EKP+ C
Sbjct: 576 IHKGEKPFKCGICSDAFNKPSELTKHKGIHHSSEKPFKC 460
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -2
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQL-VHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEK 335
K + C + C + F S+L+ H + VHT ++ C++C K F L L H THT +K
Sbjct: 289 KSFTCYI--CSQMFTSASQLKTHMMSVHTDDKSVFCDVCAKGFKLKSALNRHKLTHTDQK 116
Query: 336 PYVC 339
+ C
Sbjct: 115 DHAC 104
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 301 LVHTGERPFRCEICGKSFSLDFNLKTHLRT-HTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
L+ T ++ F C IC + F+ LKTH+ + HT +K C C K F S L+ H+
Sbjct: 307 LIPTDQKSFTCYICSQMFTSASQLKTHMMSVHTDDKSVFCDV--CAKGFKLKSALNRHKL 134
Query: 360 SH 361
+H
Sbjct: 133 TH 128
>14345
Length = 1180
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +1
Query: 300 QLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
QL HT ++PF C++C K F+ +L TH HTG+K VC C+ FT++S L H+
Sbjct: 424 QLTHTDKKPFVCDVCNKGFNRKSSLNTHKLNHTGQKRCVCDV--CNASFTRNSALKKHKL 597
Query: 360 SH 361
H
Sbjct: 598 IH 603
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +1
Query: 272 LTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRT 330
LTH K +VC V C K F S L H+L HTG++ C++C SF+ + LK H
Sbjct: 427 LTHTDKKPFVCDV--CNKGFNRKSSLNTHKLNHTGQKRCVCDVCNASFTRNSALKKHKLI 600
Query: 331 HTGEKPY---VCK 340
HTG+ + VCK
Sbjct: 601 HTGQ*YFLGGVCK 639
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
T +K + C + C K F S+L H L H G K VC V C F NS L++H+L+H
Sbjct: 436 TDKKPFVC--DVCNKGFNRKSSLNTHKLNHTGQKRCVCDV--CNASFTRNSALKKHKLIH 603
Query: 304 TGERPFRCEIC 314
TG+ F +C
Sbjct: 604 TGQ*YFLGGVC 636
>01370
Length = 1076
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 288 KRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
K F + ++ H ++H+GE+P+ C C K F+L NL+THL+TH E
Sbjct: 1 KGFSKQTNMKNHLILHSGEKPYECSKCNKRFALQCNLRTHLKTHEAE 141
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = +1
Query: 316 KSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
K FS N+K HL H+GEKPY C C+KRF NL H K+H
Sbjct: 1 KGFSKQTNMKNHLILHSGEKPYECS--KCNKRFALQCNLRTHLKTH 132
>17441
Length = 491
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = +3
Query: 318 FSLDFNLKTHLRTHTGEKPYVCKFPGCDK 346
FSLDFNL+TH+R HTG++P+VC F C+K
Sbjct: 6 FSLDFNLRTHVRIHTGDRPFVCPFDACNK 92
Score = 29.6 bits (65), Expect(2) = 0.87, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 289 RFVDNSKLRRHQLVHTGERPFRCEI 313
RF + LR H +HTG+RPF C
Sbjct: 3 RFSLDFNLRTHVRIHTGDRPFVCPF 77
Score = 20.0 bits (40), Expect(2) = 0.87, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 318 FSLDFNLKTHLRTHTGEK 335
F+ NLK+H+ TH K
Sbjct: 95 FAQSTNLKSHILTHAKAK 148
>19355
Length = 477
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%)
Frame = -1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTH 331
C KRF LRRH HTGERPF C+ C K F+L ++ H R H
Sbjct: 423 CSKRFWSLQDLRRHMRSHTGERPFECDKCHKRFTLKHSMMRHRRKH 286
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = -1
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYV 363
+R C +C K F +L+ H+R+HTGE+P+ C C KRFT ++ H + H +
Sbjct: 447 QRKVYCSLCSKRFWSLQDLRRHMRSHTGERPFECD--KCHKRFTLKHSMMRHRRKHNI 280
>03522
Length = 1403
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -1
Query: 257 CGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICG 315
C K F + L + L H + +VC V C F S L+ H+L+HTGE+PF C +C
Sbjct: 1373 CEKGFAEKQHLNINKLVHFNIRQFVCNV--CDMSFKQKSCLKAHKLIHTGEKPFSCNVCN 1200
Query: 316 KSFSLDFNLKTH 327
K F ++ L TH
Sbjct: 1199 KHFRTEYLLNTH 1164
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%)
Frame = -1
Query: 279 YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYV 338
++C V C K F + L ++LVH R F C +C SF LK H HTGEKP+
Sbjct: 1388 HLCDV--CEKGFAEKQHLNINKLVHFNIRQFVCNVCDMSFKQKSCLKAHKLIHTGEKPFS 1215
Query: 339 CKFPGCDKRFTQSSNLSAHE 358
C C+K F L+ H+
Sbjct: 1214 CNV--CNKHFRTEYLLNTHK 1161
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
R C++C K F+ +L + H + +VC CD F Q S L AH+ H
Sbjct: 1394 RNHLCDVCEKGFAEKQHLNINKLVHFNIRQFVCNV--CDMSFKQKSCLKAHKLIH 1236
>25452
Length = 1551
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%)
Frame = -1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCD 345
C + FV + RH +H ERPF C+ CG SF+ L H+ H KPY C C
Sbjct: 558 CDRGFVRHDNFARHVTLHAQERPFGCQKCGASFAFLNVLVNHMYLHNKYKPYQC--GKCR 385
Query: 346 KRFTQSSNLSAH 357
K F + H
Sbjct: 384 KDFVSKYKFTKH 349
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = -1
Query: 246 VQKEYKCKQEDCGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQLVHT 304
V +++C Q C + F+ +H+ H + + CQ CG F + L H +H
Sbjct: 585 VDYKFRCTQ--CDRGFVRHDNFARHVTLHAQERPFGCQ--KCGASFAFLNVLVNHMYLHN 418
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRT--HTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
+P++C C K F + H+ T T P CK C K+F S L H +
Sbjct: 417 KYKPYQCGKCRKDFVSKYKFTKHVCTKDETVSAPQ-CK--NCGKKFISKSQLLFHSR 256
>28650
Length = 511
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTHGAKM-YVCQVEGCGKRFVDNSKLRRHQLVHTG 305
+K Y CK C F D S+LK+H + M Y C+V C K F D S L++H H
Sbjct: 1 RKSYCCKV--CLNSFTDCSSLKQHACVRNSHMSYCCKV--CPKSFPDCSSLKKHASSHKT 168
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQ 350
P C C + ++ +L+ HL+THT + + C C K F Q
Sbjct: 169 TMPHVCSHCHQGYADAESLRDHLQTHTTGRRHTCS--KCWKTFLQ 297
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Frame = +1
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
K Y C+V C F D S L++H V + C++C KSF +LK H +H P
Sbjct: 4 KSYCCKV--CLNSFTDCSSLKQHACVRNSHMSYCCKVCPKSFPDCSSLKKHASSHKTTMP 177
Query: 337 YVCKFPGCDKRFTQSSNLSAHEKSH 361
+VC C + + + +L H ++H
Sbjct: 178 HVCSH--CHQGYADAESLRDHLQTH 246
>13400
Length = 451
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -1
Query: 282 QVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLR-THTGEKPYVCK 340
+ E C K F S LR H HTGE P++C+ C ++F + K H++ THT + PY C+
Sbjct: 235 ECETCDKCFATRSDLRTHIRTHTGETPYKCDYCDRAFKQRGHRKLHIQVTHTKDMPYTCE 56
Query: 341 F 341
Sbjct: 55 L 53
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = -1
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKE 365
+ CE C K F+ +L+TH+RTHTGE PY C + CD+ F Q + H + + K+
Sbjct: 238 YECETCDKCFATRSDLRTHIRTHTGETPYKCDY--CDRAFKQRGHRKLHIQVTHTKD 74
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = -1
Query: 242 TQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRH- 299
+ +T+ K+Y+C E C K F S L+ H+ TH G Y C + C + F + H
Sbjct: 262 SHLTMVKKYEC--ETCDKCFATRSDLRTHIRTHTGETPYKC--DYCDRAFKQRGHRKLHI 95
Query: 300 QLVHTGERPFRCEICGKSFSLDFNLKTHLR 329
Q+ HT + P+ CE+C + + + HL+
Sbjct: 94 QVTHTKDMPYTCELCHQGYPTRYRYLIHLK 5
>15315
Length = 321
Score = 40.0 bits (92), Expect(2) = 2e-06, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFS 319
C + F L+RH+++HTG+RP+ C +C F+
Sbjct: 315 CVQTFARAHDLKRHKMIHTGQRPYVCNVCSMCFT 214
Score = 28.9 bits (63), Expect(2) = 2e-06, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 324 LKTHLRTHTGEKPYVCKFPGCDKRFTQSSN 353
LK H HTGEKP+ C CDK F Q +
Sbjct: 200 LKKHKLVHTGEKPFDCDV--CDKLFRQEYD 117
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = -2
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFN 323
L++H+LVHTGE+PF C++C K F +++
Sbjct: 200 LKKHKLVHTGEKPFDCDVCDKLFRQEYD 117
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 313 ICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQS 351
+C ++F+ +LK H HTG++PYVC C FT +
Sbjct: 318 MCVQTFARAHDLKRHKMIHTGQRPYVCNV--CSMCFTHT 208
>19822
Length = 431
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = -3
Query: 242 TQVTVQKEYKCKQEDCGKVFLDSSALKKHM--LTHGAKMYVCQVEGCGKRFVDNSKLRRH 299
+ V +KE+ C E+C VF ++ KKH+ + G K C F + RRH
Sbjct: 315 SHVDNKKEFVC--EECDDVFNNAFQFKKHIRSVHSGGKGQRYSCPHCDAEFGWWNIFRRH 142
Query: 300 QLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
L H GE+PF CE C FS L+ H R+H +K C
Sbjct: 141 LLTHKGEKPFVCEKCKVCFSDHVALREHKRSHARDKTNRC 22
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Frame = -3
Query: 257 CGKVFLDSSALKKHMLTH--GAKMYVCQVEGCGKRFVDNSKLRRH-QLVHTGERP--FRC 311
CG F S LK+H+ +H K +VC E C F + + ++H + VH+G + + C
Sbjct: 363 CGAAFSKSHNLKEHLSSHVDNKKEFVC--EECDDVFNNAFQFKKHIRSVHSGGKGQRYSC 190
Query: 312 EICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
C F + HL TH GEKP+VC+ C F+ L H++SH
Sbjct: 189 PHCDAEFGWWNIFRRHLLTHKGEKPFVCE--KCKVCFSDHVALREHKRSH 46
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 313 ICGKSFSLDFNLKTHLRTHT-GEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
+CG +FS NLK HL +H +K +VC+ CD F + H +S
Sbjct: 366 MCGAAFSKSHNLKEHLSSHVDNKKEFVCE--ECDDVFNNAFQFKKHIRS 226
>08416
Length = 1551
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 26/105 (24%)
Frame = -3
Query: 283 VEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFP 342
V C K F L+ H+L HT + F C++C KSF+ +L H HT KP+VC
Sbjct: 1036 VMMCNKSFKQR*HLKAHKLTHTDIKLFACDVCNKSFARRHHLTHHKLIHTDNKPFVCDVC 857
Query: 343 G--------------------------CDKRFTQSSNLSAHEKSH 361
G C+K F + L H+KSH
Sbjct: 856 GKIKIIFKSXLKXYYXIHTGQQPVCDVCNKSFRSKNGLKYHKKSH 722
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = -2
Query: 294 SKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
+ L++H LVHT +PF C++ K F NLK H THT KP
Sbjct: 1427 TYLKQHMLVHTTHKPFVCDVFHKGFIKLSNLKCHKLTHTNNKP 1299
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 32/121 (26%)
Frame = -3
Query: 257 CGKVFLDSSALKKHMLTHG-AKMYVCQVEGCGK-RFVDNSKLRRHQLVHTGERPFRCEIC 314
C K F L H L H K +VC V CGK + + S L+ + +HTG++P C++C
Sbjct: 943 CNKSFARRHHLTHHKLIHTDNKPFVCDV--CGKIKIIFKSXLKXYYXIHTGQQPV-CDVC 773
Query: 315 GKSFSLDFNLKTHLRTH------------------------------TGEKPYVCKFPGC 344
KSF LK H ++H T +K ++C C
Sbjct: 772 NKSFRSKNGLKYHKKSHNQTDQK*FVSDVCNVSVT*KSHLKKHTLIPTXQKCFICDVSFC 593
Query: 345 D 345
D
Sbjct: 592 D 590
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -2
Query: 311 CEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
C +C S+ LK H+ HT KP+VC K F + SNL H+ +H
Sbjct: 1460 CVMCVIXVSVTTYLKQHMLVHTTHKPFVCDVF--HKGFIKLSNLKCHKLTH 1314
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 274 HGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
H +YV CG F + L+ H+L+HTG + F C+ C
Sbjct: 1223 HQTVLYV----VCGNGFKPSPNLKHHKLIHTGVKQFVCDAC 1113
>12007
Length = 563
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = -2
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
+++ + C + F + ++RH HTGERPFRC CG+ F+ L HL+
Sbjct: 538 QLFPFECRTCHRHFREKGSMQRHLRTHTGERPFRCPRCGRGFAEHGTLNRHLKAKVQCDH 359
Query: 337 YVCKFPGCDK 346
Y +F G DK
Sbjct: 358 YQ-RFQGADK 332
>35283
Length = 523
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +1
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCK 340
L+RH+L+HT ++PF C++C SF+ +T TGEKP+VC+
Sbjct: 151 LKRHKLIHTXQKPFVCDVCNMSFTHKK*FETSQLVXTGEKPFVCR 285
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLK 325
C K F L+ H LVHTG++ F C++C SF+L LK
Sbjct: 291 CDKSFNRKRNLKTHTLVHTGQKSFVCDVCDASFALKCTLK 410
Score = 33.9 bits (76), Expect(2) = 0.001, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 296 LRRHQLVHTGERPFRCEICGKSF 318
L+RH+L+HTG+ F C++C K F
Sbjct: 65 LKRHKLIHTGQGXFVCDVCTKHF 133
Score = 25.4 bits (54), Expect(2) = 0.001, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 318 FSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQ 350
++ + LK H HT +KP+VC C+ FT
Sbjct: 133 YTRTYXLKRHKLIHTXQKPFVCD--VCNMSFTH 225
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 293 NSKLRRHQLVHTGERPFRCEICGKSF-SLDFNLKTHLRTHTG 333
N+ +RH+L+H+ R F C++C KSF ++ +L H +THTG
Sbjct: 397 NAL*KRHKLIHSDVRQFVCDVCNKSF*NIKQSLTHHQQTHTG 522
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +3
Query: 313 ICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNL 354
+C KSF+ NLKTH HTG+K +VC CD F L
Sbjct: 288 VCDKSFNRKRNLKTHTLVHTGQKSFVCDV--CDASFALKCTL 407
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 31/129 (24%)
Frame = +1
Query: 264 SSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI--------- 313
+ LK+H L H K +VC V C F QLV TGE+PF C +
Sbjct: 142 TYXLKRHKLIHTXQKPFVCDV--CNMSFTHKK*FETSQLVXTGEKPFVCRMFVIRVLIEN 315
Query: 314 ----CGKSFSLDFNL----------------KTHLRTHTGEKPYVCKFPGCDKRF-TQSS 352
+ F+LD NL K H H+ + +VC C+K F
Sbjct: 316 AI*RLIRWFTLDKNLLCVMCVMQVLH*NAL*KRHKLIHSDVRQFVC--DVCNKSF*NIKQ 489
Query: 353 NLSAHEKSH 361
+L+ H+++H
Sbjct: 490 SLTHHQQTH 516
>12340
Length = 2107
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -3
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHL 328
CG ++D +L RH+L+H RPF C+ C ++F NLK H+
Sbjct: 1508 CGTLWIDXYQLERHELIHNEARPFACDRCPRAFKNTSNLKAHI 1380
>12876
Length = 698
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Frame = -1
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
T E +RC+ CGK L N+ HLR H+GEK + C C K+F +LS H K+H
Sbjct: 308 TDEGRYRCKQCGKVAKLQTNILKHLRKHSGEKAFHCS--QCPKQFIYPQDLSRHRKTH 141
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHT 332
CGK + + +H H+GE+ F C C K F +L H +TH
Sbjct: 278 CGKVAKLQTNILKHLRKHSGEKAFHCSQCPKQFIYPQDLSRHRKTHA 138
>22797
Length = 419
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +2
Query: 276 AKMYVCQVEGCGKRFVDNSKLRRHQ----LVHTGERPFRCEICGKSFSLDFNLKTHLRTH 331
+ +VC V C K F H+ + HT +RP E+C KSFS + LK ++ +
Sbjct: 11 IRQFVCDV--CNKGFKQKRNWTSHKQTNDVSHTLQRPVF-EVCNKSFSNTYCLKDYMLIN 181
Query: 332 TGEKPYVCKFPGCDKRFTQSSNLSAH 357
TG+KP+VC C+K F S+L+ H
Sbjct: 182 TGQKPFVCDV--CNKIFL*RSHLTCH 253
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 284 EGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHL 328
E C K F + L+ + L++TG++PF C++C K F +L H+
Sbjct: 122 EVCNKSFSNTYCLKDYMLINTGQKPFVCDVCNKIFL*RSHLTCHI 256
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 300 QLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTG 333
+L H+ +PF C++C + LD +LK H HTG
Sbjct: 262 KLTHSDNKPFVCDVCNERLKLDCDLKEHYAIHTG 363
>02362
Length = 931
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +1
Query: 291 VDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRT 330
+ + ++ H ++H+GE+P+ C C K F+L NL+THL+T
Sbjct: 811 ISATNMKNHLILHSGEKPYECSKCNKRFALQCNLRTHLKT 930
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1
Query: 323 NLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
N+K HL H+GEKPY C C+KRF NL H K+
Sbjct: 823 NMKNHLILHSGEKPYECS--KCNKRFALQCNLRTHLKT 930
>31194
Length = 375
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = -3
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCD 345
C ++F+ S+L RH+ +H + C+ICGK F +LK H H + + C CD
Sbjct: 202 CDEKFMKVSQLNRHKKIHKVPILYPCDICGKKFKRLGSLKIHKLFHYKVRSFPCNL--CD 29
Query: 346 KRFTQSSNL 354
K F Q+ +L
Sbjct: 28 KAFMQAGDL 2
>29119
Length = 473
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHT 332
RH L+HTG + F C+IC +SF+ +LKTH HT
Sbjct: 3 FNRHMLIHTGLKAFVCDICDRSFTRADHLKTHKLIHT 113
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 267 LKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHT 304
+HML H G K +VC + C + F L+ H+L+HT
Sbjct: 3 FNRHMLIHTGLKAFVCDI--CDRSFTRADHLKTHKLIHT 113
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 327 HLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
H+ HTG K +VC CD+ FT++ +L H+ H
Sbjct: 12 HMLIHTGLKAFVCDI--CDRSFTRADHLKTHKLIH 110
>11370
Length = 783
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%)
Frame = +3
Query: 268 KKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTH 327
K +L G +Y C C K F+ S + RH H RP++C C + LK H
Sbjct: 198 KPTVLPDGRTVYRCIF--CHKDFLSYSDINRHMDFHEDIRPYKCNFCDYFARTNSQLKVH 371
Query: 328 LRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
+ H G + Y C C + S+L+ H KS
Sbjct: 372 MMRHQGIREYCCGL--CKYKGVTQSDLNRHMKS 464
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +3
Query: 291 VDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQ 350
VD +L + ++ G +RC C K F ++ H+ H +PY C F CD
Sbjct: 177 VDRERLCKPTVLPDGRTVYRCIFCHKDFLSYSDINRHMDFHEDIRPYKCNF--CDYFART 350
Query: 351 SSNLSAHEKSH 361
+S L H H
Sbjct: 351 NSQLKVHMMRH 383
>25009
Length = 437
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -3
Query: 288 KRFVDNSKLRRHQLVHTG-ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
K F L H LVHTG E F C++C K F+ +LK H HTG+K ++C
Sbjct: 204 KVFTHKGTLNVHMLVHTGQENYFVCDVCEKGFTTKGSLKRHKLIHTGQK*FLC 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 259 KVFLDSSALKKHMLTHGAK--MYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
KVF L HML H + +VC V C K F L+RH+L+HTG++ F C +
Sbjct: 204 KVFTHKGTLNVHMLVHTGQENYFVCDV--CEKGFTTKGSLKRHKLIHTGQK*FLCCV 40
>11340
Length = 481
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -1
Query: 276 AKMYVCQVEGCGKRFVDNS--KLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTG 333
+++ +C + K FV S L H+L H +PF C++C + F LD +LK H HTG
Sbjct: 310 SRLTMCLI----KSFVQKSHLSLTHHKLTHCDNKPFACDVCNERFKLDCDLKEHYVIHTG 143
Query: 334 EKPYVC 339
P C
Sbjct: 142 --PTTC 131
>27568
Length = 505
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -1
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCK 340
RP C++CGK+++ +LK H HTG+KP+ CK
Sbjct: 103 RPHVCDVCGKAYTRSSDLKRHRLNHTGQKPFDCK 2
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Frame = -1
Query: 261 FLDSSALK----KHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCE 312
LD + L + M+T + +VC V CGK + +S L+RH+L HTG++PF C+
Sbjct: 154 LLDKTGLSDKTGRKMIT---RPHVCDV--CGKAYTRSSDLKRHRLNHTGQKPFDCK 2
>09269
Length = 445
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
L H+L+HTG +PF C++C K F+ NL H THTG+
Sbjct: 9 LTAHKLLHTGLKPFVCDVCHKRFARKGNLTDHKLTHTGQ 125
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 323 NLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
L H HTG KP+VC C KRF + NL+ H+ +H
Sbjct: 6 TLTAHKLLHTGLKPFVCDV--CHKRFARKGNLTDHKLTH 116
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 267 LKKHMLTH-GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE 306
L H L H G K +VC V C KRF L H+L HTG+
Sbjct: 9 LTAHKLLHTGLKPFVCDV--CHKRFARKGNLTDHKLTHTGQ 125
>36716
Length = 453
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Frame = +2
Query: 259 KVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGER------PFRCE 312
+VF S LK H + H CG+ S L+RH VH + PF C
Sbjct: 110 RVFKRSDHLKDHKVVHSDDKPFFV*M*CGRGLKLASDLKRHLSVHAKHKSLYDQNPFICH 289
Query: 313 ICGKSFSLDFNLKTHLRTHTGE------KPYVC 339
+C K F LK HL TH+ + KP+VC
Sbjct: 290 VCHKGFKFAHRLKRHLSTHSKQ*SVYDHKPFVC 388
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 278 MYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSF 318
++ C V C K F NS L H+ +HTG +PF C++C KSF
Sbjct: 1 LFTCDV--CDKSFKKNSYLNIHKGIHTGHKPFACDLCEKSF 117
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRF 348
F C++C KSF + L H HTG KP+ C C+K F
Sbjct: 4 FTCDVCDKSFKKNSYLNIHKGIHTGHKPFACDL--CEKSF 117
>38596
Length = 550
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -2
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
T R C++C K+F NLK H HTG KPYVC
Sbjct: 126 TAVRAHVCDVCNKAFKWPSNLKCHKLIHTGLKPYVC 19
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -2
Query: 275 GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
+ +VC V C K F S L+ H+L+HTG +P+ C++C
Sbjct: 123 AVRAHVCDV--CNKAFKWPSNLKCHKLIHTGLKPYVCDVC 10
>36976
Length = 442
Score = 37.0 bits (84), Expect(2) = 4e-04, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSL 320
L+RH+L+HT +PF C++C K F+
Sbjct: 354 LKRHRLIHTDYKPFVCDVCNKGFTF 428
Score = 24.3 bits (51), Expect(2) = 4e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 247 QKEYKCKQEDCGKVFLDSSALKKHMLTHGA---KMYVCQV 283
QK + C + C K +SS LK+H L H K VC V
Sbjct: 208 QKPFVC--DVCSKTCTNSSELKRHKLIHTMTSRKNLVCDV 321
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 269 KHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTH- 327
K L+ A+ +VC V C K F S + L+H ++PF C++C K+ + LK H
Sbjct: 103 KTXLSTAARPHVCDV--CFKTFTTLSDHKDTWLIHINQKPFVCDVCSKTCTNSSELKRHK 276
Query: 328 -LRTHTGEKPYVC 339
+ T T K VC
Sbjct: 277 LIHTMTSRKNLVC 315
>22953
Length = 722
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 286 CGKRFVDNSKLRRHQLVHTGERP-FRCEICGKSFSLDFNLKTHLRTHTGEKPY 337
C F H L+H RP C +C KSF+ + LK H++TH G+ Y
Sbjct: 564 CNVSFKSRKTFNHHTLIHKENRPRHYCTVCPKSFTERYTLKMHMKTHDGDVVY 406
Score = 25.4 bits (54), Expect(2) = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = -3
Query: 313 ICGKSFSLDFNLKTHLRTHTGEKP-YVCKFPGCDKRFTQSSNLSAHEKSH 361
IC SF H H +P + C C K FT+ L H K+H
Sbjct: 567 ICNVSFKSRKTFNHHTLIHKENRPRHYCTV--CPKSFTERYTLKMHMKTH 424
Score = 23.1 bits (48), Expect(2) = 1.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 283 VEGCGKRFVDNSKLRRHQLVHTGE 306
V CG RF ++ L H+L H E
Sbjct: 659 VRKCGLRFSQDNLLYNHRLRHEAE 588
>26368
Length = 459
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%)
Frame = +3
Query: 244 VTVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVH 303
+ V Y+C+ C F D L H+ H K + + C V KL H+ +H
Sbjct: 15 MPVNGVYRCR--FCRLKFPDRLRLIAHIERHINKGTIRKCRFCEFYTVFTQKLFEHECIH 188
Query: 304 TGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
T E+P++C C L ++ H R H+ EK + C C + +NL H + H
Sbjct: 189 TKEKPYQCSKCTFRSRLKEDVYRHQRVHSSEKRFQCN--ECGHQTRTGANLRRHMEKH 356
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 298 RHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP--YVCKFPG 343
RHQ VH+ E+ F+C CG NL+ H+ H + P +VCK G
Sbjct: 255 RHQRVHSSEKRFQCNECGHQTRTGANLRRHMEKHQPDMPRKFVCKICG 398
>10058
Length = 449
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -1
Query: 256 DCGKVFLDSSALKKHM-LTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
+CGK F + L +HM + H + + C + CGK F L+RH ++H+ F C+ C
Sbjct: 431 ECGKTFRKAVLLNRHMKVVHSGQTFNC--DECGKXFTQAGLLKRHMMIHSSP-TFDCDQC 261
Query: 315 GKSFSLDFNLKTHLRTHTGE 334
K F L H H G+
Sbjct: 260 EKKFKKVGLLNRHKLAHCGK 201
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -1
Query: 255 EDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE--RP 308
++CGK F + LK+HM+ H + + C + C K+F L RH+L H G+ RP
Sbjct: 350 DECGKXFTQAGLLKRHMMIHSSPTFDC--DQCEKKFKKVGLLNRHKLAHCGK*LRP 189
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = -1
Query: 286 CGKRFVDNSKLRRH-QLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGC 344
CGK F L RH ++VH+G+ F C+ CGK F+ LK H+ H+ + C C
Sbjct: 428 CGKTFRKAVLLNRHMKVVHSGQ-TFNCDECGKXFTQAGLLKRHMMIHSSP-TFDC--DQC 261
Query: 345 DKRFTQSSNLSAHEKSH 361
+K+F + L+ H+ +H
Sbjct: 260 EKKFKKVGLLNRHKLAH 210
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
R F C CGK+F L H++ + + C C K FTQ+ L H H
Sbjct: 449 RTFDCNECGKTFRKAVLLNRHMKVVHSGQTFNCD--ECGKXFTQAGLLKRHMMIH 291
>28878
Length = 384
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = -3
Query: 325 KTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKEK 366
+ H R HTGE+PY CK C + FTQS++L HE++ +++ K
Sbjct: 130 QVHERVHTGERPYKCKI--CHRCFTQSNDLRRHERNVHMRGK 11
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = -3
Query: 299 HQLVHTGERPFRCEICGKSFSLDFNLKTHLR 329
H+ VHTGERP++C+IC + F+ +L+ H R
Sbjct: 124 HERVHTGERPYKCKICHRCFTQSNDLRRHER 32
>19915
Length = 458
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLS 355
F CE+CGK F + H+ TH KPY CK CD+ F + L+
Sbjct: 8 FVCELCGKGFHQRGEHRMHMLTHQAVKPYPCKL--CDRSFVSRAKLN 142
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 277 KMYVCQVEGCGKRFVDNSKLRRH-QLVHTGERPFRCEICGKSFSLDFNLKTHL 328
K +VCQ C F + L+ H HT ERPF C +C F+ + HL
Sbjct: 172 KPHVCQ--QCNAAFATLAHLKDHFTYAHTTERPFACHLCHSRFACKRFYRLHL 324
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 248 KEYKCKQEDCGKVFLDSSALKKHMLTHGA-KMYVCQVEGCGKRFVDNSKL 296
K++ C E CGK F + HMLTH A K Y C++ C + FV +KL
Sbjct: 2 KQFVC--ELCGKGFHQRGEHRMHMLTHQAVKPYPCKL--CDRSFVSRAKL 139
>39790
Length = 741
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +1
Query: 308 PFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNL------SAHEKSH 361
P C +CGK+F+ + + K H+ H K Y C P C K + ++L S H+KSH
Sbjct: 448 PHACNLCGKTFACNEHFKGHMNMHNNVKAYKC--PNCPKEYAYKTSLRLHMNRSCHKKSH 621
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 279 YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHL 328
+ C + CGK F N + H +H + ++C C K ++ +L+ H+
Sbjct: 451 HACNL--CGKTFACNEHFKGHMNMHNNVKAYKCPNCPKEYAYKTSLRLHM 594
>00667
Length = 538
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 281 CQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLR 329
C CG +F + S LRRH+ H RC ICG FS +LK H++
Sbjct: 443 CTCACCGLKFHNQSNLRRHENKHFNIYRHRCSICGSKFSRSDSLKLHVK 297
>00084
Length = 2147
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 281 CQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLR 329
C CG +F + S LRRH+ H RC ICG FS +LK H++
Sbjct: 2052 CTCACCGLKFHNQSNLRRHENKHFNIYRHRCSICGSKFSRSDSLKLHVK 1906
>31942
Length = 845
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTG 333
K+Y C + C + + L HQ VH+ RP+ CEIC + +LK HL+T G
Sbjct: 295 KVYSCXI--CNFKTAFKNSLVNHQAVHSDARPWICEICDYAAKRKQDLKKHLQTMHG 459
>04747
Length = 2948
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 250 YKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRH-QLVHTGERP 308
++CK C K F+ L +H+ H + + C C K + L H ++ H G+
Sbjct: 392 FECK--ICSKKFIYRFLLMRHISYHSFQ-FACGF--CQKAYKHKVDLFDHFEIKHDGQMK 556
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
FRC+ C + F + +TH++ H C C+KR+ S + H K
Sbjct: 557 FRCKYCERKFEDLVHFETHIKVHKDGTVVRCTV--CNKRYNNSKRMLMHLK 703
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 257 CGKVFLDSSALKKHMLT-HGAKMYVCQVEGCGKRFVDNSKLRRH-QLVHTGERPFRCEIC 314
C + FL K H HG K Q C K F N +L H ++ H G+ PF C C
Sbjct: 1776 CKECFLKRKPYKLHQFNRHGCKSGFFQCRLCRKMFSRNDRLFHHFKMHHIGKLPFLCRGC 1955
Query: 315 GKSFSLDFNLKTH 327
+ FS ++ +H
Sbjct: 1956 RQEFSTSEDILSH 1994
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +2
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCD 345
C ++F D H VH RC +C K ++ + HL+ G C+ C
Sbjct: 572 CERKFEDLVHFETHIKVHKDGTVVRCTVCNKRYNNSKRMLMHLKNSHGP----CEV--CG 733
Query: 346 KRFTQSSNLSAHEKS 360
K FT H+++
Sbjct: 734 KTFTMEKQFLEHQRT 778
>22374
Length = 843
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = +1
Query: 237 KSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLT-HGAKMYVCQVEGCGKRFVDNSK 295
KSK +E+ C C + F + ++H+ + H + + + + C ++F
Sbjct: 292 KSKRDVDFFKNREHAC--PFCDQTFTGADTFQEHVASVHEDQAFFDECDICRRKFYGKEY 465
Query: 296 LRRHQLVHTGER--PFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSN 353
L+RH+ H + + C+ C K F F+L+TH + H+ +K C G RF
Sbjct: 466 LQRHRNTHNKIQIESYPCDQCSKVFRRKFSLETHRKVHSFKKFLPCDICGEQFRFINEVE 645
Query: 354 LSAHEKSHY 362
H+ Y
Sbjct: 646 KHKHKVHRY 672
>26669
Length = 515
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = -1
Query: 257 CGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGE-----RPFRC 311
CG F AL H L + C V CG F L++H H+ E + C
Sbjct: 254 CGMYFPQPEALALH-LESCRQAPSCVV--CGDTFESGPLLQQHYYAHSAEERASAQFLPC 84
Query: 312 EICGKSFSLDFNLKTHLRTHTGEKPYV 338
CG+ F L+ H R+H KPYV
Sbjct: 83 SDCGEVFVSTIQLRQHQRSHGTLKPYV 3
>09754
Length = 688
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 290 FVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYV 338
F + L+ H+L HT R F C++C KSF L H THT K +V
Sbjct: 92 FTQSGNLKTHKLTHTDIRQFVCDVCHKSFKHSSTLSRHKLTHTDIK*FV 238
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 VFLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEI 313
VF S LK H LTH + +VC V C K F +S L RH+L HT + F ++
Sbjct: 89 VFTQSGNLKTHKLTHTDIRQFVCDV--CHKSFKHSSTLSRHKLTHTDIK*FVSDV 247
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 318 FSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
F+ NLKTH THT + +VC C K F SS LS H+ +H
Sbjct: 92 FTQSGNLKTHKLTHTDIRQFVCDV--CHKSFKHSSTLSRHKLTH 217
>14267
Length = 385
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 278 MYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFS 319
M +C V CGK + S+L H+L+H+ +PF+C IC K F+
Sbjct: 87 MSLCTV--CGKEML-TSRLSAHKLIHSDVKPFKCPICQKGFA 203
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 289 RFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPG 343
RF ++ H H GE+ +CE CG F + +L+ H+ K Y C F G
Sbjct: 194 RFRMQRNMQYHFRTH-GEKQLQCEECGDKFFIRKHLRNHVEYKHHGKTYDCNFCG 355
>09962
Length = 775
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYV 338
L +H+ HT ++P+ CE+C K F N H HTG K +V
Sbjct: 724 LTQHKSTHTDQKPYVCEVCSKRFKQSHNFTNHKLIHTGIK*FV 596
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = -1
Query: 323 NLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
+L H THT +KPYVC+ C KRF QS N + H+ H
Sbjct: 727 HLTQHKSTHTDQKPYVCEV--CSKRFKQSHNFTNHKLIH 617
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 267 LKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPF 309
L +H TH K YVC+V C KRF + H+L+HTG + F
Sbjct: 724 LTQHKSTHTDQKPYVCEV--CSKRFKQSHNFTNHKLIHTGIK*F 599
>08448
Length = 471
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 311 CEICGKSFSLDFNLKTHLRTHTG 333
CE CGK F+ F+LK H+R HTG
Sbjct: 343 CEECGKEFNYPFDLKRHMRVHTG 411
>23439
Length = 489
Score = 28.9 bits (63), Expect(2) = 0.011, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 324 LKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHE 358
LK H+ H G KP+VC C + F S L H+
Sbjct: 104 LKQHILIHXGYKPFVCYV--CHQGFINSICLKRHK 6
Score = 27.3 bits (59), Expect(2) = 0.011, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEI 313
C K F S L +H+L+HTG+ C +
Sbjct: 309 CNKSFRQXSNLTQHKLIHTGQNHLCCCV 226
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTH 327
L++H L+H G +PF C +C + F LK H
Sbjct: 104 LKQHILIHXGYKPFVCYVCHQGFINSICLKRH 9
>01482
Length = 1809
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -2
Query: 279 YVCQVEGCGKRFVDNSKLRRHQ-LVHTGERPFRCEICGKSFSLDFNLKTHLR-THTGEKP 336
Y C + CGK F RHQ + H C C ++F+ NLK HLR H +
Sbjct: 1085 YACNM--CGKVFNQAGNRTRHQNMCHQNCPLLSCHYCRQTFNRSDNLKIHLRERHGIGEQ 912
Query: 337 YVCKFPGCDKRFTQSSNLSAHE 358
VC C KRF +L AH
Sbjct: 911 LVCSV--CTKRFRSKVSLIAHS 852
>37973
Length = 139
Score = 29.6 bits (65), Expect(2) = 0.017, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTG 333
+ F C++C K F+ NLK H HTG
Sbjct: 84 KSFVCDVCEKGFTZKXNLKXHKLIHTG 4
Score = 26.2 bits (56), Expect(2) = 0.017, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 290 FVDNSKLRRHQLVHTGERPF 309
F N L+ H+L+HTG++ F
Sbjct: 136 FTQNGHLKTHKLIHTGQKIF 77
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTG 305
K +VC V C K F + L+ H+L+HTG
Sbjct: 84 KSFVCDV--CEKGFTZKXNLKXHKLIHTG 4
>13232
Length = 460
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +1
Query: 262 LDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLD 321
+S+ + + K++ C C ++F + RH+ G+ FRC+IC KSF
Sbjct: 157 FNSAGIFDYGKPRPPKIFEC--PKCHQKFGHRRSIYRHRKACEGQFDFRCDICDKSFYRL 330
Query: 322 FNLKTHLRTHT 332
+LK H++ H+
Sbjct: 331 DSLKIHIQKHS 363
>27161
Length = 1840
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 306 ERPFRCEICGKSFSLDFNLKTHLR-THTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
++ F CE CGK+F++ + H+ H KP+VC C+ F L H K
Sbjct: 1395 KKNFSCEFCGKTFAVRRDCYGHVNAVHLKHKPFVCNI--CNSSFANMKTLHGHRK 1553
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSF 318
K ++C E C K FV + H VH G++PF+C C + F
Sbjct: 436 KKFIC--EFCQKAFVAHRDYEGHVNVHLGKKPFQCSTCYRCF 555
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 306 ERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
E+ F CE C K+F + + H+ H G+KP+ C
Sbjct: 433 EKKFICEFCQKAFVAHRDYEGHVNVHLGKKPFQC 534
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 282 QVEGCGKRFVDNSKLRRH-QLVHTGERPFRCEICGKSFSLDFNLKT 326
E CGK F H VH +PF C IC SF+ N+KT
Sbjct: 1407 SCEFCGKTFAVRRDCYGHVNAVHLKHKPFVCNICNSSFA---NMKT 1535
>09647
Length = 1041
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
K++ CQ C + F + H H +PF+CE C K F+ NL H + G++
Sbjct: 41 KIFECQY--CLRIFTSKHQFTGHMNSHLSVKPFKCESCEKCFAYATNLSRHRHSCKGQQV 214
Query: 337 YV 338
Y+
Sbjct: 215 YI 220
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 307 RP--FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
RP F C+ C + F+ H+ +H KP+ C+ C+K F ++NLS H S
Sbjct: 35 RPKIFECQYCLRIFTSKHQFTGHMNSHLSVKPFKCE--SCEKCFAYATNLSRHRHS 196
>36072
Length = 230
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 286 CGKRFVDNSKL-RRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGE 334
C F ++ R H LVHTGE+PF C++ KS FN K H HTG
Sbjct: 223 CNMSFTQKRRI*RLHNLVHTGEKPFVCDVHYKS----FNRKCHF--HTGH 92
>26444
Length = 408
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 282 QVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKF 341
Q C FV + L +HQ P RCE CGK+F +L H+ T ++C+
Sbjct: 22 QCHLCHMPFVSWALLAQHQSQCPRRGPHRCEQCGKAFRSKTSLTDHINTIHRGVIFICR- 198
Query: 342 PGCDKRFTQSSNLSAHEK 359
GC + F +++ H++
Sbjct: 199 -GCRETFKWRTHIYQHKR 249
>38480
Length = 854
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRTH--TGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
GE +RC++C + ++ N H T K Y C F C K FT+ N++AH K
Sbjct: 493 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVK 657
>04586
Length = 1096
Score = 30.4 bits (67), Expect(2) = 0.048, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 278 MYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSF 318
+YVC C F H L+H+ + F C++C KSF
Sbjct: 523 IYVCM---CV*EFYTEIXXAXHXLIHSDTKQFVCDVCNKSF 636
Score = 23.5 bits (49), Expect(2) = 0.048, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 324 LKTHLRTHTGEKPYVCKFPGCDKRFTQ 350
L H THT +K +VC C+K F Q
Sbjct: 653 LTQHKLTHTXQKSFVCDV--CNKSFKQ 727
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 293 NSKLRRHQLVHTGERPFRCEICGKSF 318
+S L +H+L HT ++ F C++C KSF
Sbjct: 644 SSXLTQHKLTHTXQKSFVCDVCNKSF 721
>18722
Length = 1036
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Frame = +3
Query: 257 CGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQL-VH-------TGERP 308
C +VF HM TH + + C + C K F L HQ VH T R
Sbjct: 168 CSQVFATRHKFTDHMKTHSS--FPC--DRCQKDFTSRDALSTHQAKVHKVKTKMMTRSRK 335
Query: 309 FRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGC 344
+C+IC K FS L+ H +H G +VC F C
Sbjct: 336 HQCDICHKQFSKAKELQLHSHSHAGT-VFVCLFVFC 440
>24817
Length = 851
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 293 NSKLRRHQLVHTGERPFRCEIC 314
N L H+L+HTG++PF C++C
Sbjct: 68 NVILTEHKLIHTGQKPFVCDVC 3
>13523
Length = 1347
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Frame = +1
Query: 235 TPKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLT--HGAKMYVCQVEGCGKRFVD 292
TP S + + + K C Q CG F + L H H + C V C F
Sbjct: 694 TPXSTMERESVMTKPLICAQ--CGLNFALETCLAAHKTIEHHQKPPHSCSV--CKIAFFS 861
Query: 293 NSKLRRHQLVHTGERP-----FRCEICGKSFSLDFNLKTHLRTHTG 333
H + H+ +R + C CG F + ++ HL THTG
Sbjct: 862 AIAYNDHLVRHSLQRESPTSYYMCSECGLDFPSEHGMRVHLSTHTG 999
>25277
Length = 559
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Frame = +3
Query: 245 TVQKEYKCKQEDCGKVFLDSSALKKHMLT--HGAKMYVCQVEGCGKRFVDNSKLRRH-QL 301
TV KCK D + + S L HM T + +VC + C K F + H +
Sbjct: 18 TVSAIVKCKMCD---LQMSRSRLASHMRTVHKDGETHVCNI--CKKIFKSSEGFNTHNKT 182
Query: 302 VHTGERPFRCEICGKSFSLDFNLKTHLRTH---TGEKPYVCKFPGCDKRFTQSSNLSAH 357
+H R F C CGK + +L HL+ + EK ++C C + F+ S L H
Sbjct: 183 IHGSGRTFTCHHCGKGYYTRHSLNFHLKLNHQEKXEKQFLCNV--CGRGFSYKSYLKKH 353
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +3
Query: 257 CGKVFLDSSALKKHMLT-HGA-KMYVCQVEGCGKRFVDNSKLRRH-QLVHT--GERPFRC 311
C K+F S H T HG+ + + C CGK + L H +L H E+ F C
Sbjct: 132 CKKIFKSSEGFNTHNKTIHGSGRTFTCH--HCGKGYYTRHSLNFHLKLNHQEKXEKQFLC 305
Query: 312 EICGKSFSLDFNLKTHL 328
+CG+ FS LK H+
Sbjct: 306 NVCGRGFSYKSYLKKHI 356
>31657
Length = 412
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 283 VEGCGKRFVDNSKLRRH-QLVHTGERPFRCEICGKSFSLDFNLKTHL 328
V C F + ++L+ H HT ERPF C +C F++ K HL
Sbjct: 36 VPQCNAAFNNPTRLKDHISYAHTTERPFACHLCHSRFAVKRFYKLHL 176
>39690
Length = 348
Score = 28.5 bits (62), Expect(2) = 0.17, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +2
Query: 250 YKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQ--VEGCGKRFVDNSKLRRHQLVHTGER 307
+ CK CGK F S LK H TH CQ V R V+ KL T
Sbjct: 17 FVCKH--CGKTFSQVSDLKMHKKTHAG----CQSNVRHETSRVVNKKKLE------TSGN 160
Query: 308 PFRCEICGKSFSL 320
F CEIC F L
Sbjct: 161 SFTCEICNAFFGL 199
Score = 23.5 bits (49), Expect(2) = 0.17, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 313 ICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKE 365
+CG S+ +TH H+ +K Y+C C ++++ +L H+ + K+
Sbjct: 195 VCGLSW------ETHQSIHSDDKAYMCDV--CGGTYSEAIDLYNHKSALATKQ 329
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 299 HQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKP 336
HQ +H+ ++ + C++CG ++S +L H ++P
Sbjct: 219 HQSIHSDDKAYMCDVCGGTYSEAIDLYNHKSALATKQP 332
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 308 PFRCEICGKSFSLDFNLKTHLRTHTG 333
F C+ CGK+FS +LK H +TH G
Sbjct: 14 SFVCKHCGKTFSQVSDLKMHKKTHAG 91
>33137
Length = 580
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 275 GAKMYVCQVEGCGKRFVDNSKLRRHQLVHTG--ERPFRCEICGKSFSLDFNLKTHLRTHT 332
G +Y C+ CGK++ S LRRH+ V G E +C C NL H+R H
Sbjct: 318 GEPVYECRH--CGKKYRWKSTLRRHENVECGGKEPSHQCPYCPYKSKQRGNLGVHVRKHH 145
Query: 333 GEKP 336
E P
Sbjct: 144 TELP 133
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -2
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVK 364
GE + C CGK + L+ H G K + P C + Q NL H + H+ +
Sbjct: 318 GEPVYECRHCGKKYRWKSTLRRHENVECGGKEPSHQCPYCPYKSKQRGNLGVHVRKHHTE 139
>11258
Length = 1044
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 294 SKLRRHQLVHTGERPFRCEICGKSFSLDFNL 324
+ L H+L+H+ R F C++C KSF + L
Sbjct: 164 THLTSHKLIHSDTRQFVCDVCNKSFXXKYTL 72
>28755
Length = 601
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +1
Query: 267 LKKHMLTHGAK-----MYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLD 321
L++H+ T G + Y C C F D K + H + H + F C CG F+
Sbjct: 220 LRQHLATAGCQSLDIEAYFC--SHCSISFEDVHKFKSHHMTHLEKFDFSCHACGTRFTGK 393
Query: 322 FNLKTHL 328
L H+
Sbjct: 394 RALDRHM 414
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 YKCKQEDCGKVFLDSSALKKHMLTHGAKM-YVCQVEGCGKRFVDNSKLRRHQLV 302
Y C C F D K H +TH K + C CG RF L RH LV
Sbjct: 271 YFCSH--CSISFEDVHKFKSHHMTHLEKFDFSCHA--CGTRFTGKRALDRHMLV 420
>00541
Length = 1307
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -1
Query: 307 RPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
+P+ C C +SFS + NL H + G + C+F CD+ F + L H +S
Sbjct: 317 KPYVCLNCNQSFSYNRNLARHRKACEGNFDFSCQF--CDQVFYRPDVLKIHLQS 162
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 277 KMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTG 333
K YVC C + F N L RH+ G F C+ C + F LK HL++ G
Sbjct: 317 KPYVCL--NCNQSFSYNRNLARHRKACEGNFDFSCQFCDQVFYRPDVLKIHLQSKHG 153
>17208
Length = 532
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 309 FRCEICGKSFSLDFNLKTHLRTH 331
C ICGK+F+L L HLR H
Sbjct: 146 LECNICGKTFNLQIKLNRHLRQH 214
>13298
Length = 457
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 309 FRCEICGKSFSLDFNLKTHLRTH 331
C ICGK+F+L L HLR H
Sbjct: 132 LECNICGKTFNLQIKLNRHLRQH 200
>02081
Length = 1292
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 298 RHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTH 331
RH+L H E+P++C +C + + LK H+ +H
Sbjct: 409 RHRLHHGCEKPYKCSLCSYATDHEGALKRHVTSH 308
>21822
Length = 875
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Frame = -3
Query: 235 TPKSKEKTQVTVQKEYKCK--QEDCGKVFLDSSALKKHMLTHGAK--MYVCQVEGCGKRF 290
TP KE T + +Q K K + + L H+ AK Y+C C F
Sbjct: 822 TPWKKELTIIPLQAPVKISTNAHSVIKXWKTPTGLTFHLQAMHAKKHPYICL--KCNTTF 649
Query: 291 VDNSKLRRHQLVHT------GER-----PFRCEICGKSFSLDFNLKTHLRTHTGEKPYVC 339
+ H H GER P +C CG F L H+ H G C
Sbjct: 648 KSLRSISSHMKTHPVKSVRWGERDPVTHPHQCGQCGLRFMHAGVLSNHMEKHIGPSQVWC 469
Query: 340 KFPGCDKRFTQSSNLSAH 357
C + F + L+ H
Sbjct: 468 S--QCQRPFQSLTELTGH 421
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 324 LKTHLRT-HTGEKPYVCKFPGCDKRFTQSSNLSAHEKSHYVKEKR 367
L HL+ H + PY+C C+ F ++S+H K+H VK R
Sbjct: 720 LTFHLQAMHAKKHPYICL--KCNTTFKSLRSISSHMKTHPVKSVR 592
>18615
Length = 453
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 295 KLRRHQLVHTGERPFRCEICGKSF 318
KL+ H L HT R F CE CG+ F
Sbjct: 451 KLKLHMLRHTSHREFMCETCGRQF 380
>08977
Length = 912
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 306 ERPFRCEICGKSFSLDFNLKTHLR 329
E+P+ C++CG+ FS NL H R
Sbjct: 912 EKPYSCQVCGRCFSSSGNLAAHRR 841
>25980
Length = 485
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 273 THGAKMYVCQVEGCGKRFVDNSKLRRHQ-LVHTGERPFRCEICGK 316
T K + Q + C F S L H+ VH + P+RC +CGK
Sbjct: 349 TSKVKNTILQCDLCSATFTSTSGLLGHKNRVHFDKHPYRCNVCGK 483
>26976
Length = 479
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 270 HMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLR 329
H H + C+V R V S+L H V C+IC + FS +L H+R
Sbjct: 74 HKPVHDDSLVQCKV---CDREVRKSQLSEHMCVAHSLTDNTCDICNRKFSHRDSLLRHVR 244
Query: 330 -THTGEKPYVCKFPGCDKRFTQSSNLSAHEK 359
H + + C CDKR+ +L+ H K
Sbjct: 245 DIHERGQVFACS--DCDKRYFYKKSLALHRK 331
>19993
Length = 1602
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Frame = +3
Query: 293 NSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRT----------HTGE------KP 336
NSK L + R F+C+ C +FS L HLRT +T E +P
Sbjct: 288 NSKAMPMGLPNEAGRKFQCQQCKVAFSRQTYLILHLRTQQHQRGNMSSYTLERYLDPNRP 467
Query: 337 YVCKFPGCDKRFTQSSNLSAHEKS 360
Y C+ C + FTQ ++L H S
Sbjct: 468 YKCE--PCKESFTQKNSLLYHYNS 533
>37570
Length = 266
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTH 331
+ +H+L H+G++ C +C KSF+ +LK H +H
Sbjct: 249 IEQHKLSHSGQKLHACGVCDKSFTRAGHLKQHKSSH 142
>13308
Length = 739
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +2
Query: 290 FVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFT 349
F+ +KL L H C+ C +SFS +NLK HLR G + K C +F
Sbjct: 14 FIPTNKLT--NLAHKSGYVVMCDYCEESFSRAWNLKVHLRRKHGIGQEL-KCAKCGAKFR 184
Query: 350 QSSNLSAHEKS 360
L H ++
Sbjct: 185 SEVRLKIHSEA 217
>29906
Length = 457
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 286 CGKRFVDNSKLRRHQLVHTGERPFRCEIC 314
C + F S LRRH + H G + F+C +C
Sbjct: 349 CDQHFTSVSNLRRHAIRHLGWKRFKCRLC 263
>13815
Length = 832
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 308 PF---RCEICGKSFSLDFNLKTHLRTHTGEKPYVCK 340
PF +C C K F D L+ H+R+HTG + VCK
Sbjct: 62 PFFKHKCRFCHKVFGSDSALQIHVRSHTGSQ--VCK 163
>34997
Length = 450
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 257 CGKVFLDSSALKKHM-LTHGAKMYVCQVEGCGKRFVDNSKLRRHQ-LVHTGERPFRCEIC 314
C + D + KHM L H ++C + C K F + L H+ H + RC IC
Sbjct: 229 CNIMLPDVKSFCKHMRLEH--HQHLCVI--CWKCFNSHQALGFHRNATHGSKEHLRCHIC 62
Query: 315 GKSFSLDFNLKTHLR 329
GKSF+ N + H+R
Sbjct: 61 GKSFAHRQNKQQHMR 17
>02245
Length = 2710
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 291 VDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKT 326
+D+ RH+++H ++PF C +C ++F LK+
Sbjct: 1262 LDSY*FDRHKMIHECKKPFACHLCPRAFK*QEQLKS 1369
>20246
Length = 436
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 303 HTGERPFRCEICGKSFSLDFNLKTHL 328
HT ERPF C +C F++ K HL
Sbjct: 36 HTTERPFACHLCHSRFAVKRFYKLHL 113
>16393
Length = 2131
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 296 LRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTH 331
+RH +V+ + +C+IC K F NL H+ H
Sbjct: 1932 FKRHTVVNPAAKRHKCQICRKPFIFVNNLMKHVMVH 2039
>37392
Length = 500
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 305 GERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGCDKRFTQSSNL 354
G + C +C K F LK HL HT + Y+C C +RF + +L
Sbjct: 279 GTTEYACGVCSKRFQQLKYLKMHLPAHTDK--YLCN--DCGRRFAPAPSL 416
>37933
Length = 637
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 323 NLKTHLRT-HTGEKPYVCKFPGCDKRFTQSSNLSAHEKSH 361
NL H+R H GE+ ++C C K F+ + AH+K H
Sbjct: 623 NLNAHVRAFHQGER-FLCDAESCGKAFSSKQRMEAHKKVH 507
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 262 LDSSALKKHMLT-HGAKMYVCQVEGCGKRFVDNSKLRRHQLVHT 304
LD L H+ H + ++C E CGK F ++ H+ VH+
Sbjct: 635 LDKRNLNAHVRAFHQGERFLCDAESCGKAFSSKQRMEAHKKVHS 504
>10565
Length = 798
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 311 CEICGKSFSLDFNLKTHLRTHT 332
C CG++F L +HLRTH+
Sbjct: 533 CHTCGRAFMARIGLISHLRTHS 468
>16004
Length = 327
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 311 CEICGKSFSLDFNLKTHLRTHT 332
C CG++F L +HLRTH+
Sbjct: 14 CHTCGRAFMARIGLISHLRTHS 79
>20037
Length = 757
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 261 FLDSSALKKHMLTHG-AKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSF 318
F DSS+LK + LTH + +VC + C K F +R L T F C+ KSF
Sbjct: 140 FTDSSSLKHYKLTHSDVREFVC--DMCHKSF------KRSNLTXTDSIHFVCDX*DKSF 292
>02333
Length = 881
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 290 FVDNSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRTH 331
+ S +RH V+ + +C+IC K F NL H+ H
Sbjct: 662 YFSQSCFKRHTAVNPAAKRHKCQICRKPFIFVNNLMKHVMAH 787
>29530
Length = 1131
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 262 LDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSF 318
L SS + + G ++ C+ C K F+ L RH+ G+ C ICGK F
Sbjct: 355 LGSSTRGRVATSQGRPVFSCRT--CNKTFLHQCNLFRHRKKCEGDYHLACHICGKQF 191
>05883
Length = 389
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 300 QLVHTGERPFRCEICGKSFSLDFNLKTHLR----THTGEKPYVC 339
QL T F CE C S ++LK HLR H +K VC
Sbjct: 217 QLKETASVQFYCEFCNFCCSWRYDLKLHLRQKHGIHQLKKILVC 348
>07228
Length = 1259
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 311 CEICGKSFSLDFNLKTHLRTHT 332
C CG++F + +HLRTH+
Sbjct: 937 CHTCGRAFMAGIGVISHLRTHS 1002
>17354
Length = 562
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 279 YVCQVEGCGKRFVDNSKLRRHQLVHTGERPFRCEICGKSF 318
+VC+ C + +SK+R H H RP+ C CG +
Sbjct: 257 FVCR--SCHVKTRAHSKMRYHLNRHINYRPYTCTTCGSFY 144
>14097
Length = 761
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 311 CEICGKSFSLDFNLKTHLRTHT 332
C CG++F L +HLRTH+
Sbjct: 272 CHTCGRAFMARIGLISHLRTHS 207
>18303
Length = 1041
Score = 25.4 bits (54), Expect(2) = 6.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 308 PFRCEICGKSFSLDFNLKTHLRTHTGEK 335
P+ CEICGK + H+ H K
Sbjct: 208 PYHCEICGKGMFSAARYRDHMNMHNNIK 125
Score = 20.8 bits (42), Expect(2) = 6.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 340 KFPGCDKRFTQSSNLSAHEKSHYVKE 365
K P C KRFT S++ H ++ K+
Sbjct: 117 KCPFCLKRFTFKSDVRRHIRNGVCKK 40
>19857
Length = 1189
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 44/134 (32%), Gaps = 11/134 (8%)
Frame = -2
Query: 236 PKSKEKTQVTVQKEYKCKQEDCGKVFLDSSALKKHMLTHGAKMYVCQVEGCGKRFVDNSK 295
PK K + + KEY C Q C + L H+ + K C+ C F
Sbjct: 906 PKKKXRI---IAKEYTCYQ--CNISWKTPGGLSVHLQSSHFKTDACECLKCNTTFKSLRG 742
Query: 296 LRRHQLVHT-----------GERPFRCEICGKSFSLDFNLKTHLRTHTGEKPYVCKFPGC 344
+ H H P +C CG F TH++ H G C C
Sbjct: 741 VAFHMKTHPYNYMVRPERDPTTHPHQCGQCGLRFMHAGVFATHVQRHKGPSQVWCS--QC 568
Query: 345 DKRFTQSSNLSAHE 358
+ F L+ H+
Sbjct: 567 QRSFQSVVELTGHQ 526
>13520
Length = 1011
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 305 GERPFRCEICGK-SFSLDFNLKTHLRTHTGEKPYVCKF 341
G + C +C K + +L +LKTH THT Y+C
Sbjct: 935 GYYIYVC-VCHKHTHTLSLSLKTHTYTHTNMLTYICIL 825
>26048
Length = 816
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 278 MYVCQVEG-CGKRFVD--NSKLRRHQLVHTGERPFRCEICGKSFSLDFNLKTHLRT-HTG 333
+YV ++ G G +D NS + +H + + F C +CGK + + + H+ + H
Sbjct: 4 VYVARLYGSVGPGNIDLFNSGIEKHSTL--SKLLFYCTLCGKQYKNKIDCEGHVNSQHLH 177
Query: 334 EKPYVCKFPGCDKRFTQSSNLSAHE 358
KP++C C RF +L H+
Sbjct: 178 HKPFMCS--TCYTRFPYRRSLRRHK 246
>30743
Length = 569
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 298 RHQLVHTGERPFRCEICGK 316
R+ ++HT E+P C++CGK
Sbjct: 326 RNYIMHTFEKPKECDVCGK 382
>16200
Length = 456
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 311 CEICGKSFSLDFNLKTHLR-THTGEKPYVCKFPGCDKRFTQSSNLSAHEKS 360
C +C SF+ NLK H+R H + VC + C++RF LS H S
Sbjct: 110 CPLCHHSFNRLDNLKCHMRHKHGIGEQLVCFY--CNRRFRSKLKLSHHMYS 256
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00047490__3824.m02986hypothetical_protein
(495 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13543 95 8e-20
24275 75 7e-14
27967 64 2e-10
31725 59 4e-09
07985 46 4e-05
38029 38 0.007
32825 38 0.010
25159 29 3.9
>13543
Length = 821
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 2/172 (1%)
Frame = -1
Query: 273 YDGSWENGCKNGYGVLTYASGARYEGMWARDRANGRGIMYYA-NNDKYDGEWVDGAKQGK 331
Y+G W+NG K+G+G LT G YEG + NG G +++ +N KY G++++G G
Sbjct: 815 YEGEWKNGKKHGHGKLTMKDGTYYEGQFVNGEINGHGFKFFSVSNYKYTGQFLNGEMHGH 636
Query: 332 GVYYFHDGSRYEGDWVQDYKNGIGLFIHVNGDRYQXXXXXXXXXXXX-VYNYSNGDRYEG 390
GV + D S YEG WV+ K + +F +Y Y NGDRYEG
Sbjct: 635 GVMQYRDESIYEGQWVKKQKTRLLVFCGHRARQYMKGHFKHINKNGEGSQTYDNGDRYEG 456
Query: 391 EWQNDKRHGRLGTLYMQNGDRYSGEWKDGEKNGQGVYEFSNFDVYEGYWLNG 442
W D+RHG G L+ +G Y G++ +G+G + ++ +Y G WL+G
Sbjct: 455 YWVMDQRHGH-GELFCADGTYYVGQFAHDMYHGEGKMQHASGMLYVGQWLHG 303
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Frame = -1
Query: 166 KHGKGMYTYPNGDIYLGDWKDDFFNGNGVYIFSIGE-RYEGQLINGYKHGRGKYFYVNGN 224
KHG G T +G Y G + + NG+G FS+ +Y GQ +NG HG G Y + +
Sbjct: 788 KHGHGKLTMKDGTYYEGQFVNGEINGHGFKFFSVSNYKYTGQFLNGEMHGHGVMQYRDES 609
Query: 225 VYQGEWREDKKDGRGVYQYNTTGEKYEGEWRNGERHGKGTYYFAFGDVYDGSWENGCKNG 284
+Y+G+W + +K V+ + + +G +++ ++G+G+ + GD Y+G W ++G
Sbjct: 608 IYEGQWVKKQKTRLLVFCGHRARQYMKGHFKHINKNGEGSQTYDNGDRYEGYWVMDQRHG 429
Query: 285 YGVLTYASGARYEGMWARDRANGRGIMYYANNDKYDGEWVDG 326
+G L A G Y G +A D +G G M +A+ Y G+W+ G
Sbjct: 428 HGELFCADGTYYVGQFAHDMYHGEGKMQHASGMLYVGQWLHG 303
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 1/165 (0%)
Frame = -1
Query: 202 RYEGQLINGYKHGRGKYFYVNGNVYQGEWREDKKDGRGVYQYNTTGEKYEGEWRNGERHG 261
RYEG+ NG KHG GK +G Y+G++ + +G G ++ + KY G++ NGE HG
Sbjct: 818 RYEGEWKNGKKHGHGKLTMKDGTYYEGQFVNGEINGHGFKFFSVSNYKYTGQFLNGEMHG 639
Query: 262 KGTYYFAFGDVYDGSWENGCKNGYGVLTYASGARY-EGMWARDRANGRGIMYYANNDKYD 320
G + +Y+G W K V +Y +G + NG G Y N D+Y+
Sbjct: 638 HGVMQYRDESIYEGQWVKKQKTRLLVFCGHRARQYMKGHFKHINKNGEGSQTYDNGDRYE 459
Query: 321 GEWVDGAKQGKGVYYFHDGSRYEGDWVQDYKNGIGLFIHVNGDRY 365
G WV + G G + DG+ Y G + D +G G H +G Y
Sbjct: 458 GYWVMDQRHGHGELFCADGTYYVGQFAHDMYHGEGKMQHASGMLY 324
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Frame = -1
Query: 318 KYDGEWVDGAKQGKGVYYFHDGSRYEGDWVQDYKNGIGL-FIHVNGDRYQXXXXXXXXXX 376
+Y+GEW +G K G G DG+ YEG +V NG G F V+ +Y
Sbjct: 818 RYEGEWKNGKKHGHGKLTMKDGTYYEGQFVNGEINGHGFKFFSVSNYKYTGQFLNGEMHG 639
Query: 377 XXVYNYSNGDRYEGEWQNDKRHGRLGTLYMQNGDRY-SGEWKDGEKNGQGVYEFSNFDVY 435
V Y + YEG+W K+ RL +Y G +K KNG+G + N D Y
Sbjct: 638 HGVMQYRDESIYEGQWVK-KQKTRLLVFCGHRARQYMKGHFKHINKNGEGSQTYDNGDRY 462
Query: 436 EGYWLNGKRHGKGIYRWNNGEHYNGDWKNDRMNGYGVFTKVDGSVYEGE 484
EGYW+ +RHG G +G +Y G + +D +G G G +Y G+
Sbjct: 461 EGYWVMDQRHGHGELFCADGTYYVGQFAHDMYHGEGKMQHASGMLYVGQ 315
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 49/152 (32%)
Frame = -1
Query: 387 RYEGEWQNDKRHGRLGTLYMQNGDRYSGEWKDGEKNGQGV--YEFSNFDVYEGYWLNGKR 444
RYEGEW+N K+HG G L M++G Y G++ +GE NG G + SN+ Y G +LNG+
Sbjct: 818 RYEGEWKNGKKHGH-GKLTMKDGTYYEGQFVNGEINGHGFKFFSVSNYK-YTGQFLNGEM 645
Query: 445 HGKGI--YR---------------------------------------------WNNGEH 457
HG G+ YR ++NG+
Sbjct: 644 HGHGVMQYRDESIYEGQWVKKQKTRLLVFCGHRARQYMKGHFKHINKNGEGSQTYDNGDR 465
Query: 458 YNGDWKNDRMNGYGVFTKVDGSVYEGEFKDDV 489
Y G W D+ +G+G DG+ Y G+F D+
Sbjct: 464 YEGYWVMDQRHGHGELFCADGTYYVGQFAHDM 369
>24275
Length = 2220
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Frame = -3
Query: 235 KDGRGVYQYNTTGEKYEGEWRNGERHGKGTYYFAFGDVYDGSWENGCKNGYGVLTYASGA 294
DGRG ++ ++Y G W+ RHG GT ++ + Y+G W G ++G+G + Y G
Sbjct: 2215 PDGRGGFK-----KEYSGGWKGDLRHGYGTEFYTEDEYYEGEWYAGKRSGWGRMYYKDGN 2051
Query: 295 RYEGMWARDRANGRGIMYYANNDKYDGEWVDGAKQGKGVYYFHD-GSRYEGDWVQD 349
YEG W D+ NG+G++ N ++Y+G W D K G G +Y+ D G +EG WV D
Sbjct: 2050 IYEGEWYDDQRNGQGMLRLVNENRYEGSWKDDKKNGPGKFYYLDSGQVFEGVWVND 1883
Score = 65.5 bits (158), Expect(2) = 1e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Frame = -3
Query: 180 YLGDWKDDFFNGNGVYIFSIGERYEGQLINGYKHGRGKYFYVNGNVYQGEWREDKKDGRG 239
Y G WK D +G G ++ E YEG+ G + G G+ +Y +GN+Y+GEW +D+++G+G
Sbjct: 2185 YSGGWKGDLRHGYGTEFYTEDEYYEGEWYAGKRSGWGRMYYKDGNIYEGEWYDDQRNGQG 2006
Query: 240 VYQYNTTGEKYEGEWRNGERHGKGT-YYFAFGDVYDGSWEN 279
+ + +YEG W++ +++G G YY G V++G W N
Sbjct: 2005 MLRL-VNENRYEGSWKDDKKNGPGKFYYLDSGQVFEGVWVN 1886
Score = 21.6 bits (44), Expect(2) = 1e-11, Method: Compositional matrix adjust.
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -2
Query: 296 YEGMWARDRANGRGIMY 312
+EG WAR R+ I +
Sbjct: 1865 HEGFWARQRSRAHAISH 1815
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Frame = -3
Query: 388 YEGEWQNDKRHGRLGTLYMQNGDRYSGEWKDGEKNGQGVYEFSNFDVYEGYWLNGKRHGK 447
Y G W+ D RHG GT + + Y GEW G+++G G + + ++YEG W + +R+G+
Sbjct: 2185 YSGGWKGDLRHG-YGTEFYTEDEYYEGEWYAGKRSGWGRMYYKDGNIYEGEWYDDQRNGQ 2009
Query: 448 GIYRWNNGEHYNGDWKNDRMNGYGVFTKVD-GSVYEGEFKDDVA 490
G+ R N Y G WK+D+ NG G F +D G V+EG + +D
Sbjct: 2008 GMLRLVNENRYEGSWKDDKKNGPGKFYYLDSGQVFEGVWVNDTP 1877
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%)
Frame = -3
Query: 268 AFGDVYDGSWENGCKNGYGVLTYASGARYEGMWARDRANGRGIMYYANNDKYDGEWVDGA 327
F Y G W+ ++GYG Y YEG W + +G G MYY + + Y+GEW D
Sbjct: 2200 GFKKEYSGGWKGDLRHGYGTEFYTEDEYYEGEWYAGKRSGWGRMYYKDGNIYEGEWYDDQ 2021
Query: 328 KQGKGVYYFHDGSRYEGDWVQDYKNGIGLFIHVN 361
+ G+G+ + +RYEG W D KNG G F +++
Sbjct: 2020 RNGQGMLRLVNENRYEGSWKDDKKNGPGKFYYLD 1919
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%)
Frame = -3
Query: 296 YEGMWARDRANGRGIMYYANNDKYDGEWVDGAKQGKGVYYFHDGSRYEGDWVQDYKNGIG 355
Y G W D +G G +Y ++ Y+GEW G + G G Y+ DG+ YEG+W D +NG G
Sbjct: 2185 YSGGWKGDLRHGYGTEFYTEDEYYEGEWYAGKRSGWGRMYYKDGNIYEGEWYDDQRNGQG 2006
Query: 356 LFIHVNGDRYQXXXXXXXXXXXXVYNYSNGDRYEGEWQNDKRHGRLGTLYMQNGDRYSGE 415
+ VN +RY EG W++DK++G Y+ +G + G
Sbjct: 2005 MLRLVNENRY-----------------------EGSWKDDKKNGPGKFYYLDSGQVFEGV 1895
Query: 416 W 416
W
Sbjct: 1894 W 1892
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%)
Frame = -3
Query: 164 NVKHGKGMYTYPNGDIYLGDWKDDFFNGNGVYIFSIGERYEGQLINGYKHGRGKYFYVNG 223
+++HG G Y + Y G+W +G G + G YEG+ + ++G+G VN
Sbjct: 2164 DLRHGYGTEFYTEDEYYEGEWYAGKRSGWGRMYYKDGNIYEGEWYDDQRNGQGMLRLVNE 1985
Query: 224 NVYQGEWREDKKDGRGVYQYNTTGEKYEGEWRN 256
N Y+G W++DKK+G G + Y +G+ +EG W N
Sbjct: 1984 NRYEGSWKDDKKNGPGKFYYLDSGQVFEGVWVN 1886
>27967
Length = 370
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%)
Frame = -1
Query: 282 KNGYGVLTYASGARYEGMWARDRANGRGIMYYANNDKYDGEWVDGAKQGKGVYYFHDGSR 341
++G G T + YEGM+ + +G+GI + N +Y GE++ K G+G + + DGS+
Sbjct: 250 RHGEGKATLPNKDTYEGMYENGKRHGQGIYRFKNGARYIGEYMKNKKHGQGTFIYPDGSK 71
Query: 342 YEGDWVQDYKNGIGLFIHVNGD 363
YEG WV+D + G G + +VNGD
Sbjct: 70 YEGGWVEDQRCGFGKYYYVNGD 5
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Frame = -1
Query: 412 YSGEWKDG-----EKNGQGVYEFSNFDVYEGYWLNGKRHGKGIYRWNNGEHYNGDWKNDR 466
Y GE++ G E++G+G N D YEG + NGKRHG+GIYR+ NG Y G++ ++
Sbjct: 292 YLGEYEGGRNERDERHGEGKATLPNKDTYEGMYENGKRHGQGIYRFKNGARYIGEYMKNK 113
Query: 467 MNGYGVFTKVDGSVYEGEFKDD 488
+G G F DGS YEG + +D
Sbjct: 112 KHGQGTFIYPDGSKYEGGWVED 47
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Frame = -1
Query: 258 ERHGKGTYYFAFGDVYDGSWENGCKNGYGVLTYASGARYEGMWARDRANGRGIMYYANND 317
ERHG+G D Y+G +ENG ++G G+ + +GARY G + +++ +G+G Y +
Sbjct: 253 ERHGEGKATLPNKDTYEGMYENGKRHGQGIYRFKNGARYIGEYMKNKKHGQGTFIYPDGS 74
Query: 318 KYDGEWVDGAKQGKGVYYFHDG 339
KY+G WV+ + G G YY+ +G
Sbjct: 73 KYEGGWVEDQRCGFGKYYYVNG 8
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%)
Frame = -1
Query: 156 YIGQIRDKNVKHGKGMYTYPNGDIYLGDWKDDFFNGNGVYIFSIGERYEGQLINGYKHGR 215
Y G +++ +HG+G T PN D Y G +++ +G G+Y F G RY G+ + KHG+
Sbjct: 280 YEGGRNERDERHGEGKATLPNKDTYEGMYENGKRHGQGIYRFKNGARYIGEYMKNKKHGQ 101
Query: 216 GKYFYVNGNVYQGEWREDKKDGRGVYQY 243
G + Y +G+ Y+G W ED++ G G Y Y
Sbjct: 100 GTFIYPDGSKYEGGWVEDQRCGFGKYYY 17
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 53/89 (59%)
Frame = -1
Query: 390 GEWQNDKRHGRLGTLYMQNGDRYSGEWKDGEKNGQGVYEFSNFDVYEGYWLNGKRHGKGI 449
G + D+RHG G + N D Y G +++G+++GQG+Y F N Y G ++ K+HG+G
Sbjct: 271 GRNERDERHGE-GKATLPNKDTYEGMYENGKRHGQGIYRFKNGARYIGEYMKNKKHGQGT 95
Query: 450 YRWNNGEHYNGDWKNDRMNGYGVFTKVDG 478
+ + +G Y G W D+ G+G + V+G
Sbjct: 94 FIYPDGSKYEGGWVEDQRCGFGKYYYVNG 8
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%)
Frame = -1
Query: 248 EKYEGEWRNGERHGKGTYYFAFGDVYDGSWENGCKNGYGVLTYASGARYEGMWARDRANG 307
+ YEG + NG+RHG+G Y F G Y G + K+G G Y G++YEG W D+ G
Sbjct: 214 DTYEGMYENGKRHGQGIYRFKNGARYIGEYMKNKKHGQGTFIYPDGSKYEGGWVEDQRCG 35
Query: 308 RGIMYYANND 317
G YY N D
Sbjct: 34 FGKYYYVNGD 5
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%)
Frame = -1
Query: 302 RDRANGRGIMYYANNDKYDGEWVDGAKQGKGVYYFHDGSRYEGDWVQDYKNGIGLFIHVN 361
RD +G G N D Y+G + +G + G+G+Y F +G+RY G+++++ K+G G FI
Sbjct: 259 RDERHGEGKATLPNKDTYEGMYENGKRHGQGIYRFKNGARYIGEYMKNKKHGQGTFI--- 89
Query: 362 GDRYQXXXXXXXXXXXXVYNYSNGDRYEGEWQNDKRHGRLGTLYMQNGD 410
Y +G +YEG W D+R G G Y NGD
Sbjct: 88 --------------------YPDGSKYEGGWVEDQRCG-FGKYYYVNGD 5
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Frame = -1
Query: 383 SNGDRYEGEWQNDKRHGRLGTLYMQNGDRYSGEWKDGEKNGQGVYEFSNFDVYEGYWLNG 442
N D YEG ++N KRHG+ G +NG RY GE+ +K+GQG + + + YEG W+
Sbjct: 223 PNKDTYEGMYENGKRHGQ-GIYRFKNGARYIGEYMKNKKHGQGTFIYPDGSKYEGGWVED 47
Query: 443 KRHGKGIYRWNNGE 456
+R G G Y + NG+
Sbjct: 46 QRCGFGKYYYVNGD 5
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = -1
Query: 212 KHGRGKYFYVNGNVYQGEWREDKKDGRGVYQYNTTGEKYEGEWRNGERHGKGTYYFAFGD 271
+HG GK N + Y+G + K+ G+G+Y++ G +Y GE+ ++HG+GT+ + G
Sbjct: 250 RHGEGKATLPNKDTYEGMYENGKRHGQGIYRF-KNGARYIGEYMKNKKHGQGTFIYPDGS 74
Query: 272 VYDGSWENGCKNGYGVLTYASG 293
Y+G W + G+G Y +G
Sbjct: 73 KYEGGWVEDQRCGFGKYYYVNG 8
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = -1
Query: 147 QLTYADGATYIGQIRDKNVKHGKGMYTYPNGDIYLGDWKDDFFNGNGVYIFSIGERYEGQ 206
+ T + TY G + + +HG+G+Y + NG Y+G++ + +G G +I+ G +YEG
Sbjct: 235 KATLPNKDTYEG-MYENGKRHGQGIYRFKNGARYIGEYMKNKKHGQGTFIYPDGSKYEGG 59
Query: 207 LINGYKHGRGKYFYVNGN 224
+ + G GKY+YVNG+
Sbjct: 58 WVEDQRCGFGKYYYVNGD 5
>31725
Length = 1230
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 10/93 (10%)
Frame = -2
Query: 412 YSGEWKDGEKNGQGVY----------EFSNFDVYEGYWLNGKRHGKGIYRWNNGEHYNGD 461
Y+G+W++G ++G G + ++ ++Y+G ++NG RHG G + + NG Y+G
Sbjct: 1199 YNGQWENGIQHGMGQHIWLLSRVPGSQYPMRNMYDGEFVNGLRHGFGTFHYANGASYSGY 1020
Query: 462 WKNDRMNGYGVFTKVDGSVYEGEFKDDVAVQQP 494
WKN+ +G G F +G +YEG F+ D V+ P
Sbjct: 1019 WKNNMKHGKGKFMFKNGRIYEGMFEHDHIVEYP 921
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%)
Frame = -2
Query: 203 YEGQLINGYKHGRGKYFYVNGNVYQGEWREDKKDGRGVYQYNTTGEKYEGEWRNGERHGK 262
Y GQ NG +HG G++ ++ V ++ Y+GE+ NG RHG
Sbjct: 1199 YNGQWENGIQHGMGQHIWLLSRVPGSQY--------------PMRNMYDGEFVNGLRHGF 1062
Query: 263 GTYYFAFGDVYDGSWENGCKNGYGVLTYASGARYEGMWARD 303
GT+++A G Y G W+N K+G G + +G YEGM+ D
Sbjct: 1061 GTFHYANGASYSGYWKNNMKHGKGKFMFKNGRIYEGMFEHD 939
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%)
Frame = -2
Query: 272 VYDGSWENGCKNGYGVLTYASGARYEGMWARDRANGRGIMYYANNDKYDGEWVDGAKQGK 331
+Y+G WENG ++G G + +W R G Y + YDGE+V+G + G
Sbjct: 1202 IYNGQWENGIQHGMG----------QHIWLLSRVPGSQ---YPMRNMYDGEFVNGLRHGF 1062
Query: 332 GVYYFHDGSRYEGDWVQDYKNGIGLFIHVNGDRYQ 366
G +++ +G+ Y G W + K+G G F+ NG Y+
Sbjct: 1061 GTFHYANGASYSGYWKNNMKHGKGKFMFKNGRIYE 957
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Frame = -2
Query: 250 YEGEWRNGERHGKGTYYFAFGDV----------YDGSWENGCKNGYGVLTYASGARYEGM 299
Y G+W NG +HG G + + V YDG + NG ++G+G YA+GA Y G
Sbjct: 1199 YNGQWENGIQHGMGQHIWLLSRVPGSQYPMRNMYDGEFVNGLRHGFGTFHYANGASYSGY 1020
Query: 300 WARDRANGRGIMYYANNDKYDGEW 323
W + +G+G + N Y+G +
Sbjct: 1019 WKNNMKHGKGKFMFKNGRIYEGMF 948
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Frame = -2
Query: 388 YEGEWQNDKRHGRLGTLYMQNG---------DRYSGEWKDGEKNGQGVYEFSNFDVYEGY 438
Y G+W+N +HG +++ + + Y GE+ +G ++G G + ++N Y GY
Sbjct: 1199 YNGQWENGIQHGMGQHIWLLSRVPGSQYPMRNMYDGEFVNGLRHGFGTFHYANGASYSGY 1020
Query: 439 WLNGKRHGKGIYRWNNGEHYNGDWKNDRMNGYGVFTKVDGSV 480
W N +HGKG + + NG Y G +++D + Y F +DG+
Sbjct: 1019 WKNNMKHGKGKFMFKNGRIYEGMFEHDHIVEYPDF-HMDGAT 897
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Frame = -2
Query: 179 IYLGDWKDDFFNGNGVYI----------FSIGERYEGQLINGYKHGRGKYFYVNGNVYQG 228
IY G W++ +G G +I + + Y+G+ +NG +HG G + Y NG Y G
Sbjct: 1202 IYNGQWENGIQHGMGQHIWLLSRVPGSQYPMRNMYDGEFVNGLRHGFGTFHYANGASYSG 1023
Query: 229 EWREDKKDGRGVYQYNTTGEKYEGEW 254
W+ + K G+G + + G YEG +
Sbjct: 1022 YWKNNMKHGKGKFMFK-NGRIYEGMF 948
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Frame = -2
Query: 165 VKHGKGMYT----------YPNGDIYLGDWKDDFFNGNGVYIFSIGERYEGQLINGYKHG 214
++HG G + YP ++Y G++ + +G G + ++ G Y G N KHG
Sbjct: 1175 IQHGMGQHIWLLSRVPGSQYPMRNMYDGEFVNGLRHGFGTFHYANGASYSGYWKNNMKHG 996
Query: 215 RGKYFYVNGNVYQGEWRED 233
+GK+ + NG +Y+G + D
Sbjct: 995 KGKFMFKNGRIYEGMFEHD 939
>07985
Length = 1107
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +1
Query: 270 GDVYDGSWENGCKNGYGVLTYASGARYEGMWARDRANGRGIMYYANNDKYDGEWVDGAKQ 329
G YDG++ NG G G + + RYEG +G+G +++ N KY+ W DG
Sbjct: 31 GSSYDGNYTNGRMEGKGQYCFPTETRYEGELRDGMFHGKGTLFFPNGSKYEATWEDGIAL 210
Query: 330 GKGVYYFHDGSRYE 343
+G Y F DG +Y+
Sbjct: 211 -EGKYTFADGLQYD 249
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +1
Query: 292 SGARYEGMWARDRANGRGIMYYANNDKYDGEWVDGAKQGKGVYYFHDGSRYEGDWVQDYK 351
+G+ Y+G + R G+G + +Y+GE DG GKG +F +GS+YE W +
Sbjct: 28 TGSSYDGNYTNGRMEGKGQYCFPTETRYEGELRDGMFHGKGTLFFPNGSKYEATW----E 195
Query: 352 NGIGL 356
+GI L
Sbjct: 196 DGIAL 210
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 176 NGDIYLGDWKDDFFNGNGVYIFSIGERYEGQLINGYKHGRGKYFYVNGNVYQGEWRE 232
G Y G++ + G G Y F RYEG+L +G HG+G F+ NG+ Y+ W +
Sbjct: 28 TGSSYDGNYTNGRMEGKGQYCFPTETRYEGELRDGMFHGKGTLFFPNGSKYEATWED 198
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +1
Query: 246 TGEKYEGEWRNGERHGKGTYYFAFGDVYDGSWENGCKNGYGVLTYASGARYEGMWARDRA 305
TG Y+G + NG GKG Y F Y+G +G +G G L + +G++YE W D
Sbjct: 28 TGSSYDGNYTNGRMEGKGQYCFPTETRYEGELRDGMFHGKGTLFFPNGSKYEATW-EDGI 204
Query: 306 NGRGIMYYANNDKYDGE 322
G +A+ +YD E
Sbjct: 205 ALEGKYTFADGLQYDEE 255
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%)
Frame = +1
Query: 408 NGDRYSGEWKDGEKNGQGVYEFSNFDVYEGYWLNGKRHGKGIYRWNNGEHYNGDWKNDRM 467
G Y G + +G G+G Y F YEG +G HGKG + NG Y W+ D +
Sbjct: 28 TGSSYDGNYTNGRMEGKGQYCFPTETRYEGELRDGMFHGKGTLFFPNGSKYEATWE-DGI 204
Query: 468 NGYGVFTKVDGSVYEGE 484
G +T DG Y+ E
Sbjct: 205 ALEGKYTFADGLQYDEE 255
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 167 HGKGMYTYPNGDIYLGDWKDDFFNGNGVYIFSIGERYEGQLINGYKHGRGKYFYVNGNVY 226
GKG Y +P Y G+ +D F+G G F G +YE +G GKY + +G Y
Sbjct: 70 EGKGQYCFPTETRYEGELRDGMFHGKGTLFFPNGSKYEATWEDGIAL-EGKYTFADGLQY 246
Query: 227 QGE 229
E
Sbjct: 247 DEE 255
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +1
Query: 380 YNYSNGDRYEGEWQNDKRHGRLGTLYMQNGDRYSGEWKDGEKNGQGVYEFSN 431
Y + RYEGE ++ HG+ GTL+ NG +Y W+DG +G Y F++
Sbjct: 85 YCFPTETRYEGELRDGMFHGK-GTLFFPNGSKYEATWEDGIAL-EGKYTFAD 234
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 435 YEGYWLNGKRHGKGIYRWNNGEHYNGDWKNDRMNGYGVFTKVDGSVYEGEFKDDVAVQQP 494
Y+G + NG+ GKG Y + Y G+ ++ +G G +GS YE ++D +A++
Sbjct: 40 YDGNYTNGRMEGKGQYCFPTETRYEGELRDGMFHGKGTLFFPNGSKYEATWEDGIALEGK 219
Query: 495 Y 495
Y
Sbjct: 220 Y 222
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 319 YDGEWVDGAKQGKGVYYFHDGSRYEGDWVQDYKNGIGLFIHVNGDRYQ 366
YDG + +G +GKG Y F +RYEG+ +G G NG +Y+
Sbjct: 40 YDGNYTNGRMEGKGQYCFPTETRYEGELRDGMFHGKGTLFFPNGSKYE 183
>38029
Length = 429
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 308 RGIMYYANNDKYDGEWVDGAKQGKGVYYFHD-GSRYEGD 345
R +Y N D+Y GEW+D K GKG Y + D G Y+GD
Sbjct: 119 RNTVYSVNGDQYTGEWLDNKKAGKGTYVWKDTGCLYDGD 3
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2
Query: 215 RGKYFYVNGNVYQGEWREDKKDGRGVYQYNTTGEKYEGE 253
R + VNG+ Y GEW ++KK G+G Y + TG Y+G+
Sbjct: 119 RNTVYSVNGDQYTGEWLDNKKAGKGTYVWKDTGCLYDGD 3
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2
Query: 396 KRHGRLGTLYMQNGDRYSGEWKDGEKNGQGVYEFSN 431
++ G T+Y NGD+Y+GEW D +K G+G Y + +
Sbjct: 134 QKKGIRNTVYSVNGDQYTGEWLDNKKAGKGTYVWKD 27
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 243 YNTTGEKYEGEWRNGERHGKGTYYFA-FGDVYDG 275
Y+ G++Y GEW + ++ GKGTY + G +YDG
Sbjct: 107 YSVNGDQYTGEWLDNKKAGKGTYVWKDTGCLYDG 6
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 431 NFDVYEGYWLNGKRHGKGIYRW-NNGEHYNGD 461
N D Y G WL+ K+ GKG Y W + G Y+GD
Sbjct: 98 NGDQYTGEWLDNKKAGKGTYVWKDTGCLYDGD 3
>32825
Length = 379
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +1
Query: 291 ASGARYEGMWARDRANGRGIMYYANNDKYDGEWVDGAKQGKGVYYFHDGSRYEGDWV 347
A+G +Y GMW + +G G + +AN+ KY G + + +GKG Y F G GD+V
Sbjct: 16 ATGTKYVGMWNTGKWDGHGELIHANH-KYVGTFKENRMEGKGKYVFDIGCEQHGDYV 183
>25159
Length = 571
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 269 FGDVYDGSWENGCKNGYGVLTY---ASGARYEGMWARDRANGRGIMYYANNDKYD 320
+V+ S N K GV + +G + +W D NG G + + +NDK D
Sbjct: 37 LPNVWTRSGANIVKKMKGVFAFKVKGTGGKSRALWVVDAKNGNGAVKFGSNDKAD 201
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01308010__318.m00023hypothetical_protein
(634 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00561 94 2e-19
19949 80 2e-15
02147 70 3e-12
17598 69 7e-12
30256 68 9e-12
16199 51 5e-11
03387 61 1e-09
13335 59 4e-09
17266 59 4e-09
02090 59 5e-09
12806 57 2e-08
27465 57 3e-08
17602 56 5e-08
31474 55 9e-08
12960 54 2e-07
35607 52 6e-07
21105 51 2e-06
15337 51 2e-06
12574 51 2e-06
19498 50 3e-06
01768 49 4e-06
26939 49 5e-06
01327 48 2e-05
03156 47 2e-05
13278 47 3e-05
03395 47 3e-05
00825 47 3e-05
08679 47 3e-05
19140 46 4e-05
15780 44 2e-04
02960 44 2e-04
13509 44 3e-04
14500 44 3e-04
18981 41 0.001
37180 40 0.002
04358 40 0.004
21921 40 0.004
15972 39 0.009
14555 38 0.013
11493 38 0.014
19863 37 0.018
15745 37 0.020
26107 37 0.025
38362 37 0.026
30295 36 0.052
31054 36 0.057
01598 35 0.068
01249 35 0.087
27681 35 0.099
38177 35 0.11
13890 35 0.12
27806 35 0.12
16105 35 0.13
21960 34 0.17
27270 34 0.21
01462 34 0.22
10264 33 0.24
04395 33 0.29
12140 33 0.36
36111 33 0.42
17298 32 0.52
20662 32 0.53
29912 32 0.71
34005 32 0.90
04088 32 0.98
10162 31 1.9
30679 30 2.2
18320 30 2.8
27475 30 3.1
30176 30 3.5
37142 30 3.9
14972 29 4.5
20271 29 4.5
33180 29 5.3
01805 29 5.6
31864 29 6.0
12841 29 6.6
02948 29 6.8
30297 28 8.7
05642 28 9.0
03044 28 9.9
>00561
Length = 1003
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 8/223 (3%)
Frame = -3
Query: 100 DGETIASCGQDRQIRLWQNTVQSKCSI------IKAHCGAIRSMSFSADGGYXXXXXXXX 153
D +TI S +D+ + +W+ T + + H I + S+DG Y
Sbjct: 977 DPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLYGHSHFISDVVLSSDGNYALSGSWDQ 798
Query: 154 XXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYST 213
W L K F GH V S S D R + SGS DKT+ LW+ + K++
Sbjct: 797 TLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLAE---CKFTI 627
Query: 214 LDDNVKISQINSYSDHMDTVSQVLFHPDGT--CLISSSFDHKIKITDIRSNKLIQHYNAH 271
+D H D VS V F P+ + ++S +D +K+ ++ + KL +++ H
Sbjct: 626 QEDG-----------HTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGH 480
Query: 272 DAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSND 314
+ +N++++ P G S G DSK +WDL G+ +YTL ND
Sbjct: 479 NGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHND 351
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 4/241 (1%)
Frame = -3
Query: 27 KITEQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFV 86
K+T + T+ + GH I+ S S D + +W+ + +F
Sbjct: 926 KLTRDEDTNYGYPQKRLYGHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFE 747
Query: 87 GHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIK-AHCGAIRSMSFSAD--G 143
GH V V +S D I S +D+ I+LW + K +I + H + + FS +
Sbjct: 746 GHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSN 567
Query: 144 GYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLN 203
W L + K + GH ++ + +SPD L SG D +LWDLN
Sbjct: 566 PIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLN 387
Query: 204 FQKIVSKYSTLDDNVKISQINSYS-DHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSN 262
K N Y+ +H D ++ + F P+ L ++ IKI D+
Sbjct: 386 DGK-----------------NLYTLEHNDIINALCFSPNRYWLC-VAYGPSIKIWDLACK 261
Query: 263 K 263
K
Sbjct: 260 K 258
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 3/187 (1%)
Frame = -3
Query: 171 GHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHM 230
GH +++ V+S D SGS D+T+ LWDL K ++ H
Sbjct: 872 GHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFE---------------GHT 738
Query: 231 DTVSQVLFHPDGTCLISSSFDHKIKITD-IRSNKLIQHYNAHDAQVNSISIHP--TGYFL 287
V V F D ++S S D IK+ + + K + H V+ + P + +
Sbjct: 737 KDVLSVAFSADNRQIVSGSRDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPII 558
Query: 288 ASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQ 347
S G D +K+W+L + + ++ + TV + G +GG + ++W N +
Sbjct: 557 VSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGK 378
Query: 348 NIQNIEQ 354
N+ +E
Sbjct: 377 NLYTLEH 357
>19949
Length = 903
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 94/236 (39%)
Frame = +2
Query: 54 DFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQI 113
DF P AS S D V +W+ + + + + GH G V C+++SPDG IAS +D +
Sbjct: 14 DFHPYGAYTASGSMDCNVKLWDIRRKGCIYTYKGHTGCVCCLRFSPDGRWIASASEDGLV 193
Query: 114 RLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHK 173
+LW T + +K H A+ ++ F
Sbjct: 194 KLWDLTAGKLLTDLKLHRDAVNTIEF---------------------------------- 271
Query: 174 NWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTV 233
P L+ASGS D+TV WDL +++S + +++
Sbjct: 272 --------HPHEFLLASGSADRTVKFWDLETFQLIS---------------TTEPEANSI 382
Query: 234 SQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLAS 289
+LFHPDG CL S S D +K+ +L + QV +SI T AS
Sbjct: 383 RSILFHPDGVCLYSGSKD-TLKVYHWEPLELYDTVSVPWGQVCDMSISNTQLIGAS 547
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 100/244 (40%), Gaps = 2/244 (0%)
Frame = +2
Query: 176 VRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQ 235
V+S P ASGS D V LWD+ + I +Y H V
Sbjct: 2 VKSLDFHPYGAYTASGSMDCNVKLWDIRRKGC---------------IYTYKGHTGCVCC 136
Query: 236 VLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSK 295
+ F PDG + S+S D +K+ D+ + KL+ H VN+I HP + LAS +D
Sbjct: 137 LRFSPDGRWIASASEDGLVKLWDLTAGKLLTDLKLHRDAVNTIEFHPHEFLLASGSADRT 316
Query: 296 IKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIEQV 355
+K WDL + I T I ++ F+ G +G L K + ++ + V
Sbjct: 317 VKFWDLETFQLISTTEPEANSIRSILFHPDGVCLYSGSKDTL----KVYHWEPLELYDTV 484
Query: 356 QRSTVRQNDVEYSSGGLYAQTLFKTNKTASLSPSKKT--ISIIPPQQLQDTFNNRGDDEL 413
+ D+ S+ L + +KTN + + +K I P L+ N R L
Sbjct: 485 SVPWGQVCDMSISNTQLIGASFYKTNVASYVVDIEKVSHIGKPTPSSLE---NRRESTSL 655
Query: 414 NNGR 417
+N R
Sbjct: 656 SNNR 667
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%)
Frame = +2
Query: 42 SFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDG 101
+++GH + C F P R +AS S+D +V +W+ + H+ AV +++ P
Sbjct: 104 TYKGHTGCVCCLRFSPDGRWIASASEDGLVKLWDLTAGKLLTDLKLHRDAVNTIEFHPHE 283
Query: 102 ETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADG 143
+AS DR ++ W S + +IRS+ F DG
Sbjct: 284 FLLASGSADRTVKFWDLETFQLISTTEPEANSIRSILFHPDG 409
>02147
Length = 1547
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 4/264 (1%)
Frame = +2
Query: 85 FVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGG 144
F GHKGAV+ + + A+ D ++W + +H ++S+ FS DG
Sbjct: 161 FEGHKGAVWGATLNREATRAATGAADFSAKIWDAEKGEELQTF-SHKHIVKSVDFSHDGT 337
Query: 145 YXXXXXXXXXXXXWRLQDKKFMC-SFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLN 203
+ L + SFAGH + ++ + D + + S SDDKTV LW
Sbjct: 338 ALLTGSNEKLLKVFDLVNTDAEPKSFAGHTSNIKGALFLSDGKRIISASDDKTVRLW--- 508
Query: 204 FQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVL-FHPDGTCLISSSFDHKIKITDIRSN 262
+L+ ++ Q+ DT L PD +I + H I +++
Sbjct: 509 ---------SLETCQEVQQLT-----FDTPPTSLTLSPDKNTIIVT---HSQNIAFYQAD 637
Query: 263 KL--IQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTV 320
L ++ + A +A ++S S+H + F + G D K+ +D G++I + + + V
Sbjct: 638 TLREMKKFEA-EAPISSASLHQSERFFVAGGEDFKMYKFDYETGKEIESFKGHFGPVHCV 814
Query: 321 QFNQSGDYFATGGSQNLCMVWKTN 344
+F+ G+ +A+G +W+T
Sbjct: 815 RFSPDGELYASGSEDGTLRLWQTT 886
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Frame = +2
Query: 47 EDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIAS 106
E I+ A R + +D +Y ++++ + F GH G V+CV++SPDGE AS
Sbjct: 668 EAPISSASLHQSERFFVAGGEDFKMYKFDYETGKEIESFKGHFGPVHCVRFSPDGELYAS 847
Query: 107 CGQDRQIRLWQNTVQSKCSIIK 128
+D +RLWQ T+ + K
Sbjct: 848 GSEDGTLRLWQTTIGRTYGLWK 913
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 69/195 (35%), Gaps = 40/195 (20%)
Frame = +2
Query: 46 HEDIITCADFDPKMRQVASCSKDSIVYVWNF-KPQQRPFKFVGHKGAVYCVKYSPDGETI 104
H+ I+ DF + + S + ++ V++ P F GH + + DG+ I
Sbjct: 293 HKHIVKSVDFSHDGTALLTGSNEKLLKVFDLVNTDAEPKSFAGHTSNIKGALFLSDGKRI 472
Query: 105 ASCGQDRQIRLWQ-NTVQS------------------KCSIIKAH--------CGAIRSM 137
S D+ +RLW T Q K +II H +R M
Sbjct: 473 ISASDDKTVRLWSLETCQEVQQLTFDTPPTSLTLSPDKNTIIVTHSQNIAFYQADTLREM 652
Query: 138 -SFSADGG-----------YXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDM 185
F A+ + + + K + SF GH V SPD
Sbjct: 653 KKFEAEAPISSASLHQSERFFVAGGEDFKMYKFDYETGKEIESFKGHFGPVHCVRFSPDG 832
Query: 186 RLVASGSDDKTVMLW 200
L ASGS+D T+ LW
Sbjct: 833 ELYASGSEDGTLRLW 877
>17598
Length = 875
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 2/229 (0%)
Frame = +1
Query: 127 IKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMR 186
++ H + +S SAD Y W ++ F H + SPD R
Sbjct: 109 LQGHSHFVSDVSLSADSRYVLSSSWDATLRLWDIKKGNTTRRFISHTRDALAVAFSPDNR 288
Query: 187 LVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGT--C 244
+ASG DK + +W+ + K+ T+D N H D V+ V FH D
Sbjct: 289 QIASGGRDKALKIWNTVGE---CKF-TVDAN----------SHQDWVTCVKFHQDAKSPL 426
Query: 245 LISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQG 304
++S+S D IK+ D ++ L + H Q+N+I + Y+LAS D + W+++ G
Sbjct: 427 VVSASMDKTIKVWDNQTMTLKHTFVGHKTQINAIDLALKTYYLASGSKDGIVMTWNIQNG 606
Query: 305 RQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIE 353
+ + D ++ V+F+ + + G S+ + +W + I++I
Sbjct: 607 TFLGKI-DCDCEVNAVKFSPNKYWLFVGTSEGI-QIWDLPNQKKIKDIR 747
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 2/280 (0%)
Frame = +1
Query: 30 EQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHK 89
E +T P R+ +GH ++ R V S S D+ + +W+ K +F+ H
Sbjct: 76 EDETWGGP--RRTLQGHSHFVSDVSLSADSRYVLSSSWDATLRLWDIKKGNTTRRFISHT 249
Query: 90 GAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXX 149
V +SPD IAS G+D+ +++W NTV +C
Sbjct: 250 RDALAVAFSPDNRQIASGGRDKALKIW-NTV-GEC------------------------- 348
Query: 150 XXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMR--LVASGSDDKTVMLWDLNFQKI 207
KF H++WV D + LV S S DKT+ +W
Sbjct: 349 --------------KFTVDANSHQDWVTCVKFHQDAKSPLVVSASMDKTIKVW------- 465
Query: 208 VSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQH 267
DN ++ +++ H ++ + L S S D + +I++ +
Sbjct: 466 --------DNQTMTLKHTFVGHKTQINAIDLALKTYYLASGSKDGIVMTWNIQNGTFLGK 621
Query: 268 YNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQI 307
+ D +VN++ P Y+L G+ I+IWDL ++I
Sbjct: 622 IDC-DCEVNAVKFSPNKYWLF-VGTSEGIQIWDLPNQKKI 735
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = +1
Query: 27 KITEQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFV 86
K+ + QT L +F GH+ I D K +AS SKD IV WN + F+
Sbjct: 457 KVWDNQTM---TLKHTFVGHKTQINAIDLALKTYYLASGSKDGIVMTWNIQNGT----FL 615
Query: 87 GH---KGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKA 129
G V VK+SP+ + G I++W Q K I+A
Sbjct: 616 GKIDCDCEVNAVKFSPNKYWLF-VGTSEGIQIWDLPNQKKIKDIRA 750
>30256
Length = 961
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%)
Frame = +3
Query: 40 SRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSP 99
+ + GH + C K +V S S+D+ + VW+ + +GH AV CV+Y
Sbjct: 141 THTLYGHSSTVRCLSLSGK--KVVSGSRDATLRVWDIESGHCLNVLLGHMAAVRCVQY-- 308
Query: 100 DGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWR 159
DG+ + S D +R+W S ++ H + S+ F DG Y W
Sbjct: 309 DGKRVVSGAXDYTVRVWDPDTASCLHTLQGHTNRVYSLQF--DGVYVVSGSLDTSIRVWD 482
Query: 160 LQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIV 208
++ K + + GH++ + SG+ D L+ SG+ D TV +WD++ K +
Sbjct: 483 VRCGKLVHTLMGHQS-LTSGLELKD-NLLVSGNADSTVKVWDVHTGKCL 623
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 6/258 (2%)
Frame = +3
Query: 62 VASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQ 121
V S S D + VWN GH V C+ S G+ + S +D +R+W
Sbjct: 81 VISGSTDRSLKVWNADTGVCTHTLYGHSSTVRCLSLS--GKKVVSGSRDATLRVWDIESG 254
Query: 122 SKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVI 181
+++ H A+R + + DG W + + GH N V S +
Sbjct: 255 HCLNVLLGHMAAVRCVQY--DGKRVVSGAXDYTVRVWDPDTASCLHTLQGHTNRVYS--L 422
Query: 182 SPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPD 241
D V SGS D ++ +WD+ K+V TL + ++ D++
Sbjct: 423 QFDGVYVVSGSLDTSIRVWDVRCGKLV---HTLMGHQSLTSGLELKDNL----------- 560
Query: 242 GTCLISSSFDHKIKITDIRSNKLIQHY---NAHDAQVNSISIHPTGYFLASAGSDSKIKI 298
L+S + D +K+ D+ + K +Q N H + V + + F+ + D +K+
Sbjct: 561 ---LVSGNADSTVKVWDVHTGKCLQTLLGPNKHRSAVTCLQFNKK--FVVTCSDDGTVKL 725
Query: 299 WDLRQG---RQIYTLYSN 313
WDL G R + TL S
Sbjct: 726 WDLNTGDFIRNLITLPSG 779
>16199
Length = 694
Score = 50.8 bits (120), Expect(2) = 5e-11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = +1
Query: 284 GYFLASAGSDSKIKIWDLRQGRQIYTLYSNDK-DITTVQFNQSGDYFATGGSQ---NLCM 339
GY+LA++ DS +K+WDLR+ + TL DK ++ + F+QSG Y A GS LC
Sbjct: 232 GYYLATSAEDSVVKLWDLRKLKNFKTLQLGDKYEVKALCFDQSGTYLAVAGSDVRVYLCK 411
Query: 340 VW 341
W
Sbjct: 412 QW 417
Score = 35.0 bits (79), Expect(2) = 5e-11, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 238 FHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPT 283
FHPDG + + D IKI D++ + ++ H V SIS T
Sbjct: 95 FHPDGLIFATGTEDSVIKIWDLKERANVANFQGHQGPVTSISFSET 232
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 50 ITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQ 109
+TCA F P A+ ++DS++ +W+ K + F GH+G V + +S T
Sbjct: 80 LTCAQFHPDGLIFATGTEDSVIKIWDLKERANVANFQGHQGPVTSISFSETDTTWPR--- 250
Query: 110 DRQIRLWQN 118
+Q LW N
Sbjct: 251 -QQKTLWSN 274
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 280 IHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQS 325
HP G A+ DS IKIWDL++ + + +T++ F+++
Sbjct: 95 FHPDGLIFATGTEDSVIKIWDLKERANVANFQGHQGPVTSISFSET 232
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 91 AVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFS 140
A+ C ++ PDG A+ +D I++W ++ + + H G + S+SFS
Sbjct: 77 ALTCAQFHPDGLIFATGTEDSVIKIWDLKERANVANFQGHQGPVTSISFS 226
>03387
Length = 1891
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Frame = +1
Query: 188 VASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLIS 247
+ S SDD T+ LWD+N ST ++ + ++ H V V +H L
Sbjct: 409 LLSASDDHTICLWDIN--------STQRESRVVDAHTIFTGHTSVVEDVAWHLLHESLFG 564
Query: 248 S-SFDHKIKITDIRSN---KLIQHYNAHDAQVNSISIHPTGYFLASAGS-DSKIKIWDLR 302
S + D K+ I D RSN K +AH A+VN +S +P F+ + GS D + +WDLR
Sbjct: 565 SVADDQKLMIWDTRSNTTSKPSHVVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 744
Query: 303 QGR-QIYTLYSNDKDITTVQFNQSGD-YFATGGSQNLCMVW 341
+ ++++ S+ +I VQ++ + A+ G+ VW
Sbjct: 745 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 867
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 111/289 (38%), Gaps = 28/289 (9%)
Frame = +1
Query: 43 FRGHEDIITCADFDPKMR-QVASCSKDSIVYVWNFKPQQRPFK-------FVGHKGAVYC 94
+GH+ ++P + + S S D + +W+ QR + F GH V
Sbjct: 349 LKGHQKEGYGLSWNPNLNGHLLSASDDHTICLWDINSTQRESRVVDAHTIFTGHTSVVED 528
Query: 95 VKYSPDGETI-ASCGQDRQIRLWQ---NTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXX 150
V + E++ S D+++ +W NT ++ AH + +SF+ +
Sbjct: 529 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHVVDAHTAEVNCLSFNPYSEF----- 693
Query: 151 XXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSK 210
++A+GS DKTV LWDL
Sbjct: 694 ------------------------------------ILATGSADKTVALWDLR------- 744
Query: 211 YSTLDDNVKISQINSYSDHMDTVSQVLFHP-DGTCLISSSFDHKIKITDIR--------- 260
N+K+ +++S+ H D + QV + P + T L SS D ++ + D+
Sbjct: 745 ------NLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQLPE 903
Query: 261 -----SNKLIQHYNAHDAQVNSISIHPT-GYFLASAGSDSKIKIWDLRQ 303
+L+ + H A+++ S +P + + S D+ +++W + +
Sbjct: 904 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIVCSVSEDNIMQVWQMAE 1050
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +1
Query: 29 TEQQTTHDPALSRSFRGHEDIITCADFDPKMRQV-ASCSKDSIVYVWNFK-PQQRPFKFV 86
T TT P S H + C F+P + A+ S D V +W+ + + + F
Sbjct: 601 TRSNTTSKP--SHVVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE 774
Query: 87 GHKGAVYCVKYSPDGETI-ASCGQDRQIRLW 116
HK ++ V++SP ETI AS G DR++ +W
Sbjct: 775 SHKDEIFQVQWSPHNETILASSGTDRRLHVW 867
>13335
Length = 863
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 101/243 (41%), Gaps = 12/243 (4%)
Frame = +1
Query: 39 LSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFK---PQQRPFKFVGHKGAVYCV 95
L RS+ GHED + + P + S S + +YVW+ + + H V C
Sbjct: 163 LVRSYVGHEDSVMALAYSPNGHYLVSGSPNGDLYVWDASFGHCRHLTLRVDAHDLGVTCC 342
Query: 96 KYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCG---AIRSMSFSADGGYXXXXXXX 152
++SP T +C ++ S C+++ A G I+ +FSA G
Sbjct: 343 EFSPTFGT--ACAEN----------SSTCNLLLATGGKDNLIKLWTFSAQVGSPEVT--- 477
Query: 153 XXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYS 212
LQ + + +GH + V + SP L+ASGS DK+V LW
Sbjct: 478 -------LQCRDIL---SGHSDLVMACAFSPSSALLASGSFDKSVRLW------------ 591
Query: 213 TLDDNVK-ISQINSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKI---TDIRS--NKLIQ 266
D+VK ++ + + H V+ F DGT L S S D IKI TD S KL
Sbjct: 592 ---DSVKGVALFSIEACHSRFVTCCAFSIDGTLLASGSMDRIIKIWKLTDTSSIMGKLSL 762
Query: 267 HYN 269
YN
Sbjct: 763 FYN 771
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 89/254 (35%), Gaps = 2/254 (0%)
Frame = +1
Query: 50 ITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQ 109
I F P + S S D + +W Q+ +VGH+ +V + YSP+G + S
Sbjct: 70 IRVCKFSPSSSHLVSGSDDDTICMWEVATQKLVRSYVGHEDSVMALAYSPNGHYLVSGSP 249
Query: 110 DRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCS- 168
+ + +W + HC R ++ D D C
Sbjct: 250 NGDLYVWDASF--------GHC---RHLTLRVDA-----------------HDLGVTCCE 345
Query: 169 FAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSD 228
F+ + S L+A+G D + LW + Q V + + S
Sbjct: 346 FSPTFGTACAENSSTCNLLLATGGKDNLIKLWTFSAQ-------VGSPEVTLQCRDILSG 504
Query: 229 HMDTVSQVLFHPDGTCLISSSFDHKIKITD-IRSNKLIQHYNAHDAQVNSISIHPTGYFL 287
H D V F P L S SFD +++ D ++ L H V + G L
Sbjct: 505 HSDLVMACAFSPSSALLASGSFDKSVRLWDSVKGVALFSIEACHSRFVTCCAFSIDGTLL 684
Query: 288 ASAGSDSKIKIWDL 301
AS D IKIW L
Sbjct: 685 ASGSMDRIIKIWKL 726
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 25/209 (11%)
Frame = +1
Query: 173 KNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDT 232
K+ +R SP + SGSDD T+ +W++ QK+V SY H D+
Sbjct: 61 KSSIRVCKFSPSSSHLVSGSDDDTICMWEVATQKLV---------------RSYVGHEDS 195
Query: 233 VSQVLFHPDGTCLISSSFDHKIKITDI---RSNKLIQHYNAHDAQVNSISIHPT------ 283
V + + P+G L+S S + + + D L +AHD V PT
Sbjct: 196 VMALAYSPNGHYLVSGSPNGDLYVWDASFGHCRHLTLRVDAHDLGVTCCEFSPTFGTACA 375
Query: 284 ------GYFLASAGSDSKIKIWDLR----------QGRQIYTLYSNDKDITTVQFNQSGD 327
LA+ G D+ IK+W Q R I + +S+ + F+ S
Sbjct: 376 ENSSTCNLLLATGGKDNLIKLWTFSAQVGSPEVTLQCRDILSGHSD--LVMACAFSPSSA 549
Query: 328 YFATGGSQNLCMVWKTNFDQNIQNIEQVQ 356
A+G +W + + +IE
Sbjct: 550 LLASGSFDKSVRLWDSVKGVALFSIEACH 636
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 15/225 (6%)
Frame = +1
Query: 133 AIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGS 192
+IR FS + W + +K + S+ GH++ V + SP+ + SGS
Sbjct: 67 SIRVCKFSPSSSHLVSGSDDDTICMWEVATQKLVRSYVGHEDSVMALAYSPNGHYLVSGS 246
Query: 193 DDKTVMLWDLNF---QKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTC---LI 246
+ + +WD +F + + + D V + + T TC L
Sbjct: 247 PNGDLYVWDASFGHCRHLTLRVDAHDLGVTCCEFSP------TFGTACAENSSTCNLLLA 408
Query: 247 SSSFDHKIKI----TDIRSNKLIQH----YNAHDAQVNSISIHPTGYFLASAGSDSKIKI 298
+ D+ IK+ + S ++ + H V + + P+ LAS D +++
Sbjct: 409 TGGKDNLIKLWTFSAQVGSPEVTLQCRDILSGHSDLVMACAFSPSSALLASGSFDKSVRL 588
Query: 299 WDLRQGRQIYTLYS-NDKDITTVQFNQSGDYFATGGSQNLCMVWK 342
WD +G ++++ + + + +T F+ G A+G + +WK
Sbjct: 589 WDSVKGVALFSIEACHSRFVTCCAFSIDGTLLASGSMDRIIKIWK 723
>17266
Length = 480
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Frame = -1
Query: 240 PDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIW 299
PD +S + D K+ D+R Q ++ H++ +N+I+ P G+ A+ D+ +++
Sbjct: 429 PDMRTFVSGACDASAKLWDVRDGMCKQTFSGHESDINAITYFPNGHAFATGSDDATCRLF 250
Query: 300 DLRQGRQIYTLYSNDK---DITTVQFNQSGDYFATGGSQNLCMVW 341
D+R ++I +YS+D IT+V F++SG G C +W
Sbjct: 249 DIRADQEI-GMYSHDNIICGITSVAFSKSGRLLLGGYDDFNCNIW 118
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Frame = -1
Query: 181 ISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHP 240
++PDMR SG+ D + LWD+ D K ++S H ++ + + P
Sbjct: 435 LAPDMRTFVSGACDASAKLWDVR-----------DGMCK----QTFSGHESDINAITYFP 301
Query: 241 DGTCLISSSFDHKIKITDIRSNKLIQHYNAHD---AQVNSISIHPTGYFLASAGSDSKIK 297
+G + S D ++ DIR+++ I Y +HD + S++ +G L D
Sbjct: 300 NGHAFATGSDDATCRLFDIRADQEIGMY-SHDNIICGITSVAFSKSGRLLLGGYDDFNCN 124
Query: 298 IWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATG 332
IWD+ + + L +D ++ + + G ATG
Sbjct: 123 IWDVLKQERTGVLAGHDNRVSCLGVTEDGSAVATG 19
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 3/141 (2%)
Frame = -1
Query: 57 PKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLW 116
P MR S + D+ +W+ + F GH+ + + Y P+G A+ D RL+
Sbjct: 429 PDMRTFVSGACDASAKLWDVRDGMCKQTFSGHESDINAITYFPNGHAFATGSDDATCRLF 250
Query: 117 QNTVQSKCSIIKAH---CGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHK 173
+ + CG I S++FS G W + ++ AGH
Sbjct: 249 DIRADQEIGMYSHDNIICG-ITSVAFSKSGRLLLGGYDDFNCNIWDVLKQERTGVLAGHD 73
Query: 174 NWVRSGVISPDMRLVASGSDD 194
N V ++ D VA+GS D
Sbjct: 72 NRVSCLGVTEDGSAVATGSWD 10
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = -1
Query: 278 ISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNL 337
+S+ P S D+ K+WD+R G T ++ DI + + +G FATG
Sbjct: 441 LSLAPDMRTFVSGACDASAKLWDVRDGMCKQTFSGHESDINAITYFPNGHAFATGSDDAT 262
Query: 338 CMVWKTNFDQNI 349
C ++ DQ I
Sbjct: 261 CRLFDIRADQEI 226
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 59/137 (43%)
Frame = -1
Query: 158 WRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDN 217
W ++D +F+GH++ + + P+ A+GSDD T L+D+ + + YS DN
Sbjct: 378 WDVRDGMCKQTFSGHESDINAITYFPNGHAFATGSDDATCRLFDIRADQEIGMYS--HDN 205
Query: 218 VKISQINSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNS 277
+ + ++ V F G L+ D I D+ + HD +V+
Sbjct: 204 I-----------ICGITSVAFSKSGRLLLGGYDDFNCNIWDVLKQERTGVLAGHDNRVSC 58
Query: 278 ISIHPTGYFLASAGSDS 294
+ + G +A+ DS
Sbjct: 57 LGVTEDGSAVATGSWDS 7
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = -1
Query: 46 HEDII---TCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGE 102
H++II T F R + D +W+ Q+R GH V C+ + DG
Sbjct: 213 HDNIICGITSVAFSKSGRLLLGGYDDFNCNIWDVLKQERTGVLAGHDNRVSCLGVTEDGS 34
Query: 103 TIASCGQD 110
+A+ D
Sbjct: 33 AVATGSWD 10
>02090
Length = 1841
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 40/166 (24%)
Frame = -3
Query: 240 PDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIW 299
PDG S D I + D+ + L++ + H + I I P G L + G D+ ++ W
Sbjct: 1596 PDGKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISPDGTKLWTGGLDNTVRSW 1417
Query: 300 DLRQGRQI----------------------------------------YTLYSNDKDITT 319
DLR+GRQ+ Y L+ ++ + +
Sbjct: 1416 DLREGRQLQQHDFSSQIFSLGYCPTGEWLAVGMESSNVEVLHHSKPDKYQLHLHESCVLS 1237
Query: 320 VQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIEQVQRSTVRQNDV 365
++F G +F + G NL W+T + +I + + S+V D+
Sbjct: 1236 LKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDI 1105
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 57 PKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLW 116
P + SC D + VW+ Q +F GH C+ SPDG + + G D +R W
Sbjct: 1596 PDGKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISPDGTKLWTGGLDNTVRSW 1417
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 7/177 (3%)
Frame = -3
Query: 35 HDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYC 94
H+ L R F+GH D +C D P ++ + D+ V W+ + + R + ++
Sbjct: 1536 HNQTLVRQFQGHTDGASCIDISPDGTKLWTGGLDNTVRSWDLR-EGRQLQQHDFSSQIFS 1360
Query: 95 VKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXX 154
+ Y P GE +A + + + ++ K + H + S+ F+ G +
Sbjct: 1359 LGYCPTGEWLAVGMESSNVEVLHHSKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNL 1183
Query: 155 XXXWR-------LQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNF 204
WR Q K+ + V S I+ D + + +GS DK L+++ F
Sbjct: 1182 LNAWRTPYGASIFQSKE--------SSSVLSCDIAADDKYIVTGSGDKKATLYEVIF 1036
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 64/177 (36%), Gaps = 1/177 (0%)
Frame = -3
Query: 133 AIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGS 192
A +++ S DG W L ++ + F GH + ISPD + +G
Sbjct: 1620 ACYALAISPDGKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISPDGTKLWTGG 1441
Query: 193 DDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLISSSFDH 252
D TV WDL + + ++ D + + + P G L
Sbjct: 1440 LDNTVRSWDLREGRQLQQH----------------DFSSQIFSLGYCPTGEWLAVGMESS 1309
Query: 253 KIKIT-DIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIY 308
+++ + +K H H++ V S+ G + S G D+ + W G I+
Sbjct: 1308 NVEVLHHSKPDKYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 1144
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 28/74 (37%)
Frame = -3
Query: 277 SISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQN 336
+++I P G S SD I +WDL + + + + + G TGG N
Sbjct: 1611 ALAISPDGKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISPDGTKLWTGGLDN 1432
Query: 337 LCMVWKTNFDQNIQ 350
W + +Q
Sbjct: 1431 TVRSWDLREGRQLQ 1390
>12806
Length = 961
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 5/200 (2%)
Frame = +3
Query: 30 EQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHK 89
E QT P ++ GH I+ R S S D+ + +W+ K +F+ H
Sbjct: 120 EDQTWGVP--RKTLTGHSHFISDLALSADSRFALSSSWDATLRLWDIKKGSTTSRFINHT 293
Query: 90 GAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSI-IKAHCGAIRSMSFSAD--GGYX 146
V V +SPD IAS G+D+ +++W + K ++ AH + + F D
Sbjct: 294 RDVLTVAFSPDNRQIASGGRDKNLKIWNIMGECKYTVDANAHTDWVTCVRFHQDTKNPIV 473
Query: 147 XXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDM--RLVASGSDDKTVMLWDLNF 204
W +F GHK + + + DM + SGS D M W++
Sbjct: 474 VSASNDKTIKVWDNHTMTLKNTFVGHK----AQITALDMSTNYLVSGSKDGIAMTWNVAE 641
Query: 205 QKIVSKYSTLDDNVKISQIN 224
V K DD + + N
Sbjct: 642 GSFVGKID-CDDQINAIKFN 698
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 35/72 (48%)
Frame = +3
Query: 270 AHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYF 329
H ++ +++ F S+ D+ +++WD+++G ++ +D+ TV F+
Sbjct: 159 GHSHFISDLALSADSRFALSSSWDATLRLWDIKKGSTTSRFINHTRDVLTVAFSPDNRQI 338
Query: 330 ATGGSQNLCMVW 341
A+GG +W
Sbjct: 339 ASGGRDKNLKIW 374
>27465
Length = 658
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Frame = -1
Query: 229 HMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIH-PTGYFL 287
H+ ++ V F+ G+ I+ S+D KI D S + + H V +I+ + P G +
Sbjct: 364 HILPLTNVAFNKSGSSFITGSYDRTCKIWDTASAEELHTLEGHRNVVYAIAFNNPFGDKV 185
Query: 288 ASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQ 347
+ D K+W G+ +TL + +I V FN S ATG C +W
Sbjct: 184 ITGSFDKTCKLWSTADGKCYHTLRGHTAEIVCVSFNPSSTLIATGSMDTTCRLW------ 23
Query: 348 NIQNIEQVQR 357
++E+ QR
Sbjct: 22 ---DVEKAQR 2
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 2/194 (1%)
Frame = -1
Query: 11 VASQKQTQSKLGNTSSKITEQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSI 70
+ KQ K + + T + H L + R H +T F+ + S D
Sbjct: 469 ITPSKQEHVKNWCFACRKTRPKDDHHFYLFKVLRAHILPLTNVAFNKSGSSFITGSYDRT 290
Query: 71 VYVWNFKPQQRPFKFVGHKGAVYCVKY-SPDGETIASCGQDRQIRLWQNTVQSKC-SIIK 128
+W+ + GH+ VY + + +P G+ + + D+ +LW +T KC ++
Sbjct: 289 CKIWDTASAEELHTLEGHRNVVYAIAFNNPFGDKVITGSFDKTCKLW-STADGKCYHTLR 113
Query: 129 AHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLV 188
H I +SF +P L+
Sbjct: 112 GHTAEIVCVSF------------------------------------------NPSSTLI 59
Query: 189 ASGSDDKTVMLWDL 202
A+GS D T LWD+
Sbjct: 58 ATGSMDTTCRLWDV 17
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 27 KITEQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQR 81
K + +T D + RGH I C F+P +A+ S D+ +W+ + QR
Sbjct: 166 KTCKLWSTADGKCYHTLRGHTAEIVCVSFNPSSTLIATGSMDTTCRLWDVEKAQR 2
>17602
Length = 481
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Frame = +3
Query: 229 HMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNK-LIQHYNAHDAQVNSISIHPTGYFL 287
H D V+ V F+ DG+ ++SSS+D +I D S + L + + V+ + P G ++
Sbjct: 51 HSDPVTAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLXTLIDDDNPPVSFVKFSPNGKYI 230
Query: 288 ASAGSDSKIKIWDLRQGR--QIYTLYSNDKDITTVQFNQSGDYFATGGSQ-NLCMVW 341
+A D+ +K+WD +G+ + Y + N+K F+ +G + GS+ N+ +W
Sbjct: 231 LAATLDNTLKLWDYSKGKCLKTYVGHRNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 401
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 5/135 (3%)
Frame = +3
Query: 73 VWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKC--SIIKAH 130
+W+ K + H V V ++ DG I S D R+W +T +C ++I
Sbjct: 6 IWDVKTGKCLKTLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIW-DTASGQCLXTLIDDD 182
Query: 131 CGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKN---WVRSGVISPDMRL 187
+ + FS +G Y W K + ++ GH+N + + +
Sbjct: 183 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYVGHRNEKYCIFANFSVTGGKW 362
Query: 188 VASGSDDKTVMLWDL 202
+ SGS+D V +W+L
Sbjct: 363 IVSGSEDNMVYIWNL 407
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +3
Query: 297 KIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIEQVQ 356
+IWD++ G+ + TL ++ +T V FN+ G + LC +W T Q + +
Sbjct: 3 RIWDVKTGKCLKTLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLXTLIDDD 182
Query: 357 RSTVRQNDVEYSSGGLY--AQTLFKTNKTASLSPSK 390
V + V++S G Y A TL T K S K
Sbjct: 183 NPPV--SFVKFSPNGKYILAATLDNTLKLWDYSKGK 284
Score = 35.0 bits (79), Expect = 0.096, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 41 RSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKG-AVYCVKYSP 99
++ H D +T F+ + S S D + +W+ Q + V VK+SP
Sbjct: 36 KTLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLXTLIDDDNPPVSFVKFSP 215
Query: 100 DGETIASCGQDRQIRLWQNTVQSKCSIIKAHCG 132
+G+ I + D ++LW SK +K + G
Sbjct: 216 NGKYILAATLDNTLKLWD---YSKGKCLKTYVG 305
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 50 ITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCV--KYS-PDGETIAS 106
++ F P + + + + D+ + +W++ + +VGH+ YC+ +S G+ I S
Sbjct: 192 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYVGHRNEKYCIFANFSVTGGKWIVS 371
Query: 107 CGQDRQIRLW 116
+D + +W
Sbjct: 372 GSEDNMVYIW 401
>31474
Length = 403
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = -3
Query: 87 GHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQS---KCSIIKAHCGAIRSMSFSADG 143
H +CV ++P G +ASCG D+ I++W + K ++ AH +RS+ +S G
Sbjct: 311 AHDEHAWCVAWNPTGTLLASCGSDKIIKIWGKEGDNWVCKSTLTDAHTRTVRSLGWSPCG 132
Query: 144 GYXXXXXXXXXXXXWRLQDKKFMC--SFAGHKNWVRS 178
Y W + +F C + GH+N V++
Sbjct: 131 NYLSSASFDATTAVWSRKGGEFECIATLEGHENEVKA 21
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 269 NAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQ---FNQS 325
+AHD ++ +PTG LAS GSD IKIW + D TV+ ++
Sbjct: 314 SAHDEHAWCVAWNPTGTLLASCGSDKIIKIWGKEGDNWVCKSTLTDAHTRTVRSLGWSPC 135
Query: 326 GDYFATGGSQNLCMVW 341
G+Y ++ VW
Sbjct: 134 GNYLSSASFDATTAVW 87
Score = 37.0 bits (84), Expect = 0.023, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Frame = -3
Query: 220 ISQINSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLI---QHYNAHDAQVN 276
+ ++ S H + V ++P GT L S D IKI + + +AH V
Sbjct: 335 LEEVCCLSAHDEHAWCVAWNPTGTLLASCGSDKIIKIWGKEGDNWVCKSTLTDAHTRTVR 156
Query: 277 SISIHPTGYFLASAGSDSKIKIWDLRQG--RQIYTLYSNDKDITTVQFNQS 325
S+ P G +L+SA D+ +W + G I TL ++ ++ V + ++
Sbjct: 155 SLGWSPCGNYLSSASFDATTAVWSRKGGEFECIATLEGHENEVKAVAWART 3
>12960
Length = 550
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%)
Frame = +2
Query: 133 AIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGS 192
A+R++ FS D Y W + F+ ++ GH + V S D + SG
Sbjct: 179 AVRAVRFSVDSRYCMTCGSDKSVKLWNPHRELFLKTYIGHGHEVLDAQGSGDNSQICSGG 358
Query: 193 DDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLISSSFDH 252
DKTV+L+D+ + + K Y DH TV+ V F+ + T ++S S D+
Sbjct: 359 IDKTVVLFDVASGQALRK---------------YRDHAGTVNCVKFNEESTVILSGSLDN 493
Query: 253 KIKITDIRS 261
++ D RS
Sbjct: 494 TVRAWDTRS 520
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%)
Frame = +2
Query: 35 HDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYC 94
H +++ GH + A Q+ S D V +++ Q K+ H G V C
Sbjct: 263 HRELFLKTYIGHGHEVLDAQGSGDNSQICSGGIDKTVVLFDVASGQALRKYRDHAGTVNC 442
Query: 95 VKYSPDGETIASCGQDRQIRLWQNTVQSKCSI 126
VK++ + I S D +R W +S I
Sbjct: 443 VKFNEESTVILSGSLDNTVRAWDTRSRSHTPI 538
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/111 (18%), Positives = 41/111 (36%)
Frame = +2
Query: 233 VSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGS 292
V V F D ++ D +K+ + ++ Y H +V + S G
Sbjct: 182 VRAVRFSVDSRYCMTCGSDKSVKLWNPHRELFLKTYIGHGHEVLDAQGSGDNSQICSGGI 361
Query: 293 DSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKT 343
D + ++D+ G+ + + + V+FN+ +G N W T
Sbjct: 362 DKTVVLFDVASGQALRKYRDHAGTVNCVKFNEESTVILSGSLDNTVRAWDT 514
>35607
Length = 475
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +2
Query: 240 PDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIW 299
PDGT L + D+ ++ D+R + +Q ++ +Q+ S+ PTG +LA S +++
Sbjct: 8 PDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMESSNVEV- 181
Query: 300 DLRQGR-QIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIEQVQRS 358
L + Y L+ ++ + +++F G +F + G NL W+T + +I + + S
Sbjct: 182 -LHHSKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESS 352
Query: 359 TVRQNDV 365
+V D+
Sbjct: 353 SVLSCDI 373
>21105
Length = 650
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Frame = +1
Query: 239 HPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKI 298
HP I++ D I+ D + KLI AH V S+++ P G +L S D I++
Sbjct: 91 HPTMPITITAHEDRHIRFFDNNTGKLIHAMVAHLDSVTSLAVDPNGLYLLSGSHDCSIRL 270
Query: 299 WDLRQGRQIYTLYSN----DKDITTVQFNQSGDYFATGGSQNLCMVW 341
W+L + + S+ D+ I V F+ Y A+ G+ L V+
Sbjct: 271 WNLDSKTCVQEITSHRKKFDESIHDVAFHPQKPYIASAGADALAKVF 411
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = +1
Query: 183 PDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDG 242
P M + + +D+ + +D N K+ I++ H+D+V+ + P+G
Sbjct: 94 PTMPITITAHEDRHIRFFDNNTGKL---------------IHAMVAHLDSVTSLAVDPNG 228
Query: 243 TCLISSSFDHKIKITDIRSNKLIQHYNAH----DAQVNSISIHPTGYFLASAGSDSKIKI 298
L+S S D I++ ++ S +Q +H D ++ ++ HP ++ASAG+D+ K+
Sbjct: 229 LYLLSGSHDCSIRLWNLDSKTCVQEITSHRKKFDESIHDVAFHPQKPYIASAGADALAKV 408
Query: 299 W 299
+
Sbjct: 409 F 411
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +1
Query: 164 KFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQI 223
K + + H + V S + P+ + SGS D ++ LW+ LD + +I
Sbjct: 163 KLIHAMVAHLDSVTSLAVDPNGLYLLSGSHDCSIRLWN------------LDSKTCVQEI 306
Query: 224 NSYSDHMD-TVSQVLFHPDGTCLISSSFDHKIKI 256
S+ D ++ V FHP + S+ D K+
Sbjct: 307 TSHRKKFDESIHDVAFHPQKPYIASAGADALAKV 408
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +1
Query: 39 LSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKG----AVYC 94
L + H D +T DP + S S D + +WN + + H+ +++
Sbjct: 166 LIHAMVAHLDSVTSLAVDPNGLYLLSGSHDCSIRLWNLDSKTCVQEITSHRKKFDESIHD 345
Query: 95 VKYSPDGETIASCGQDRQIRLW 116
V + P IAS G D +++
Sbjct: 346 VAFHPQKPYIASAGADALAKVF 411
>15337
Length = 860
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%)
Frame = -1
Query: 83 FKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSAD 142
+++V GA+ +SP +A GQD +R++ +K++ G + + +S D
Sbjct: 347 YRWVVGTGAISEFAFSPCSRYLAVVGQDGHLRVFNYNSMELIGTMKSYFGGLLCVCWSPD 168
Query: 143 GGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDD 194
G Y W +K+ +C GHK+WV V++ D+ + D+
Sbjct: 167 GKYIVTGGEDDLVTVWSFHEKRVVCRGHGHKSWVN--VVAFDIHTCLACDDE 18
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -1
Query: 55 FDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIR 114
F P R +A +D + V+N+ + + G + CV +SPDG+ I + G+D +
Sbjct: 305 FSPCSRYLAVVGQDGHLRVFNYNSMELIGTMKSYFGGLLCVCWSPDGKYIVTGGEDDLVT 126
Query: 115 LW 116
+W
Sbjct: 125 VW 120
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -1
Query: 273 AQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATG 332
++ + P +LA G D +++++ I T+ S + V ++ G Y TG
Sbjct: 326 GAISEFAFSPCSRYLAVVGQDGHLRVFNYNSMELIGTMKSYFGGLLCVCWSPDGKYIVTG 147
Query: 333 GSQNLCMVW 341
G +L VW
Sbjct: 146 GEDDLVTVW 120
>12574
Length = 521
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Frame = +3
Query: 80 QRP-----FKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAI 134
Q+P F GH A+ VK+SP+G+ +AS D+ I++W I H +
Sbjct: 144 QKPTYTLKFTLAGHTKALSAVKFSPNGDWLASSSADKLIKIWGAYDGKFEKTIAGHKLGL 323
Query: 135 RSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGS 192
+++S+D W K M + GH N+V +P L+ SGS
Sbjct: 324 SDVAWSSDSKLLCSASDDKTLKIWEFSTGKCMKTLKGHSNYVFCCNFNPQSNLIVSGS 497
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Frame = +3
Query: 225 SYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTG 284
+ + H +S V F P+G L SSS D IKI K + H ++ ++
Sbjct: 171 TLAGHTKALSAVKFSPNGDWLASSSADKLIKIWGAYDGKFEKTIAGHKLGLSDVAWSSDS 350
Query: 285 YFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATG 332
L SA D +KIW+ G+ + TL + + FN + +G
Sbjct: 351 KLLCSASDDKTLKIWEFSTGKCMKTLKGHSNYVFCCNFNPQSNLIVSG 494
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +3
Query: 29 TEQQTTHDPALSRSF--RGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFV 86
T+ T P + F GH ++ F P +AS S D ++ +W +
Sbjct: 126 TKSSATQKPTYTLKFTLAGHTKALSAVKFSPNGDWLASSSADKLIKIWGAYDGKFEKTIA 305
Query: 87 GHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAH 130
GHK + V +S D + + S D+ +++W+ + +K H
Sbjct: 306 GHKLGLSDVAWSSDSKLLCSASDDKTLKIWEFSTGKCMKTLKGH 437
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +3
Query: 127 IKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMR 186
+ H A+ ++ FS +G + W D KF + AGHK + S D +
Sbjct: 174 LAGHTKALSAVKFSPNGDWLASSSADKLIKIWGAYDGKFEKTIAGHKLGLSDVAWSSDSK 353
Query: 187 LVASGSDDKTVMLWDLNFQKIV 208
L+ S SDDKT+ +W+ + K +
Sbjct: 354 LLCSASDDKTLKIWEFSTGKCM 419
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/84 (17%), Positives = 38/84 (45%)
Frame = +3
Query: 270 AHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYF 329
H ++++ P G +LAS+ +D IKIW G+ T+ + ++ V ++
Sbjct: 180 GHTKALSAVKFSPNGDWLASSSADKLIKIWGAYDGKFEKTIAGHKLGLSDVAWSSDSKLL 359
Query: 330 ATGGSQNLCMVWKTNFDQNIQNIE 353
+ +W+ + + ++ ++
Sbjct: 360 CSASDDKTLKIWEFSTGKCMKTLK 431
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/84 (19%), Positives = 36/84 (42%)
Frame = +3
Query: 23 NTSSKITEQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRP 82
+++ K+ + +D ++ GH+ ++ + + + S S D + +W F +
Sbjct: 240 SSADKLIKIWGAYDGKFEKTIAGHKLGLSDVAWSSDSKLLCSASDDKTLKIWEFSTGKCM 419
Query: 83 FKFVGHKGAVYCVKYSPDGETIAS 106
GH V+C ++P I S
Sbjct: 420 KTLKGHSNYVFCCNFNPQSNLIVS 491
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +3
Query: 308 YTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIEQVQRSTVRQNDVEY 367
+TL + K ++ V+F+ +GD+ A+ + L +W +D + + + + +DV +
Sbjct: 168 FTLAGHTKALSAVKFSPNGDWLASSSADKLIKIWGA-YDGKFE--KTIAGHKLGLSDVAW 338
Query: 368 SS 369
SS
Sbjct: 339 SS 344
>19498
Length = 903
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Frame = -1
Query: 42 SFRGHEDIITCADFDPKMRQVASCSKDSIVYVWN-FKPQQRPFKFVGHKGAVYCVKYSPD 100
+ RGH + + P+ +ASCS D+ + VWN K ++ GH G V V + P
Sbjct: 624 TLRGHAGDVLDLAWSPQDLWLASCSVDNTIVVWNALKFSEQVAVIRGHAGMVKGVTWDPV 445
Query: 101 GETIASCGQDRQIRLWQNTVQSKCSIIKA---HCGA---IRSMSFSADGGY 145
G +AS D+ +R+W+ + + + +K+ CG + +++S DG +
Sbjct: 444 GRYLASQSDDKTLRVWRTSDWKEETCVKSCFKECGGTTHVLRLNWSPDGNH 292
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Frame = -1
Query: 164 KFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQ- 222
+ +C H V S + + +ASG DDK +M+W ++ + + NV I +
Sbjct: 813 RVLCQMDSHLGCVNCVRWSENGKFLASGGDDKLIMIWQIS--RGFGSGKSFGSNVTILEH 640
Query: 223 ---INSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITD-IRSNKLIQHYNAHDAQVNSI 278
+ + H V + + P L S S D+ I + + ++ ++ + H V +
Sbjct: 639 WRSVATLRGHAGDVLDLAWSPQDLWLASCSVDNTIVVWNALKFSEQVAVIRGHAGMVKGV 460
Query: 279 SIHPTGYFLASAGSDSKIKIW 299
+ P G +LAS D +++W
Sbjct: 459 TWDPVGRYLASQSDDKTLRVW 397
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Frame = -1
Query: 88 HKGAVYCVKYSPDGETIASCGQDRQIRLWQ--------NTVQSKCSI---------IKAH 130
H G V CV++S +G+ +AS G D+ I +WQ + S +I ++ H
Sbjct: 789 HLGCVNCVRWSENGKFLASGGDDKLIMIWQISRGFGSGKSFGSNVTILEHWRSVATLRGH 610
Query: 131 CGAIRSMSFSADGGYXXXXXXXXXXXXWR-LQDKKFMCSFAGHKNWVRSGVISPDMRLVA 189
G + +++S + W L+ + + GH V+ P R +A
Sbjct: 609 AGDVLDLAWSPQDLWLASCSVDNTIVVWNALKFSEQVAVIRGHAGMVKGVTWDPVGRYLA 430
Query: 190 SGSDDKTVMLW 200
S SDDKT+ +W
Sbjct: 429 SQSDDKTLRVW 397
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 20/173 (11%)
Frame = -1
Query: 192 SDDKTVMLWDLNFQKIVSKYSTLDDNVK--ISQINSYSDHMDTVSQVLFHPDGTCLISSS 249
D V++W N I + DD+V + Q++S H+ V+ V + +G L S
Sbjct: 891 GDSGKVVIW--NMAPIRDEKEEADDDVPRVLCQMDS---HLGCVNCVRWSENGKFLASGG 727
Query: 250 FDHKIKITDIRSN-----------KLIQHYN------AHDAQVNSISIHPTGYFLASAGS 292
D I I I +++H+ H V ++ P +LAS
Sbjct: 726 DDKLIMIWQISRGFGSGKSFGSNVTILEHWRSVATLRGHAGDVLDLAWSPQDLWLASCSV 547
Query: 293 DSKIKIWD-LRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTN 344
D+ I +W+ L+ Q+ + + + V ++ G Y A+ VW+T+
Sbjct: 546 DNTIVVWNALKFSEQVAVIRGHAGMVKGVTWDPVGRYLASQSDDKTLRVWRTS 388
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Frame = -1
Query: 46 HEDIITCADFDPKMRQVASCSKDSIVYVWN-----------------FKPQQRPFKFVGH 88
H + C + + +AS D ++ +W + + GH
Sbjct: 789 HLGCVNCVRWSENGKFLASGGDDKLIMIWQISRGFGSGKSFGSNVTILEHWRSVATLRGH 610
Query: 89 KGAVYCVKYSPDGETIASCGQDRQIRLWQNT-VQSKCSIIKAHCGAIRSMSFSADGGYXX 147
G V + +SP +ASC D I +W + ++I+ H G ++ +++ G Y
Sbjct: 609 AGDVLDLAWSPQDLWLASCSVDNTIVVWNALKFSEQVAVIRGHAGMVKGVTWDPVGRYLA 430
Query: 148 XXXXXXXXXXWRLQDKK 164
WR D K
Sbjct: 429 SQSDDKTLRVWRTSDWK 379
>01768
Length = 1424
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Frame = +3
Query: 224 NSYSDHMDTVSQVLFHP-DGTCLISSSFDHKIKITDIRSNK----LIQHYNAHDAQVNSI 278
+SY+ H D+V V + P +G S S D ++I + + ++ AH +N I
Sbjct: 819 SSYAAHTDSVEDVQWSPNEGNVFASCSVDRTLRIWNTQQKPSKANVLTVPEAHSRDINVI 998
Query: 279 SIHPT-GYFLASAGSDSKIKIWDLRQGRQ-------IYTLYSNDKDITTVQFN-QSGDYF 329
+ +P + LAS G D IKIWDLR R + L+S + +T++++N Q
Sbjct: 999 NWNPIEKHLLASGGDDGIIKIWDLRMFRNKPVSAQASFKLHS--QPVTSLEWNPQDSSVL 1172
Query: 330 ATGGSQNLCMVWKTNFDQN 348
A G + +W + +++
Sbjct: 1173AASGEDDQITIWDFSVERD 1229
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 91/237 (38%), Gaps = 25/237 (10%)
Frame = +3
Query: 85 FVGHKGAVYCVKYSP-DGETIASCGQDRQIRLWQNTVQ--SKCSII---KAHCGAIRSMS 138
+ H +V V++SP +G ASC DR +R+W NT Q SK +++ +AH I +
Sbjct: 825 YAAHTDSVEDVQWSPNEGNVFASCSVDRTLRIW-NTQQKPSKANVLTVPEAHSRDINVI- 998
Query: 139 FSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISP-DMRLVASGSDDKTV 197
NW +P + L+ASG DD +
Sbjct: 999 -----------------------------------NW------NPIEKHLLASGGDDGII 1055
Query: 198 MLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHP-DGTCLISSSFDHKIKI 256
+WDL + N +S S+ H V+ + ++P D + L +S D +I I
Sbjct: 1056 KIWDLRMFR----------NKPVSAQASFKLHSQPVTSLEWNPQDSSVLAASGEDDQITI 1205
Query: 257 ---------------TDIRSNKLIQHYNAHDAQVNSISIHP--TGYFLASAGSDSKI 296
D+ + L QH D + + HP G +++A SD I
Sbjct: 1206 WDFSVERDEGEGEEELDVPAQLLFQHCGQTD--IKEVHWHPQLPGVLISTAKSDFNI 1370
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Frame = +3
Query: 42 SFRGHEDIITCADFDPKMRQV-ASCSKDSIVYVWNFKPQQRPFKF------VGHKGAVYC 94
S+ H D + + P V ASCS D + +WN QQ+P K H +
Sbjct: 822 SYAAHTDSVEDVQWSPNEGNVFASCSVDRTLRIWN--TQQKPSKANVLTVPEAHSRDINV 995
Query: 95 VKYSP-DGETIASCGQDRQIRLW-----QNTVQSKCSIIKAHCGAIRSMSF 139
+ ++P + +AS G D I++W +N S + K H + S+ +
Sbjct: 996 INWNPIEKHLLASGGDDGIIKIWDLRMFRNKPVSAQASFKLHSQPVTSLEW 1148
>26939
Length = 388
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +2
Query: 284 GYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKT 343
G +L SA D I++WDLR R + TLY++ T++ F+++ Y +G VW+
Sbjct: 2 GKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVWEC 181
Query: 344 NFDQNIQNI 352
+ + NI
Sbjct: 182 R*EHSANNI 208
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 242 GTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDL 301
G L+S+S D I++ D+R+ + ++ AH SI H ++ S D +K+W+
Sbjct: 2 GKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVWEC 181
Query: 302 R 302
R
Sbjct: 182 R 184
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +2
Query: 186 RLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCL 245
+ + S SDDKT+ +WDL ++ + + H + + FH +
Sbjct: 5 KYLVSASDDKTIRVWDLRNKRC---------------MKTLYAHQHFCTSIDFHKAHPYV 139
Query: 246 ISSSFDHKIKITDIR 260
IS S D +K+ + R
Sbjct: 140 ISGSVDQTVKVWECR 184
>01327
Length = 2215
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Frame = +3
Query: 41 RSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPD 100
R F GH+ ++T + + S S+D+ V +W+ + + + V VK+ P
Sbjct: 273 RDFIGHDMVVTAIHLNTDNTLLCSGSRDNTVRIWDVETGACLRQNNIPQNLVTDVKWLPG 452
Query: 101 GETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMS----------FSADGGYXXXXX 150
I G+D+++R++ + G +RS + +ADG +
Sbjct: 453 SHLIIQAGEDKEVRIYDSRTL----------GIVRSFTKKQYIQMSCDVTADGQFCLTCS 602
Query: 151 -----XXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISP---DMRLVASGSDDKTVMLWDL 202
W+L D F GH+ + + + P DM L+A+ S D +V +W++
Sbjct: 603 NGFGGNGCEATLWQLSDGSIQNEFKGHREAIEACLFLPSNQDMTLIATASRDCSVRVWNM 782
Query: 203 NFQKIVSK 210
++ V +
Sbjct: 783 FTKECVCE 806
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Frame = +3
Query: 187 LVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLI 246
L SGS DK+V+L+D ++ +++ H +++V + +
Sbjct: 81 LCLSGSKDKSVVLYDYQNGRLEDRWT---------------GHDREITKVCYGASCNGMF 215
Query: 247 SSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQG 304
S+S D IK+ ++ I+ + HD V +I ++ L S D+ ++IWD+ G
Sbjct: 216 SASRDKTIKMWQRGNSHSIRDFIGHDMVVTAIHLNTDNTLLCSGSRDNTVRIWDVETG 389
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 40/100 (40%)
Frame = +3
Query: 242 GTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDL 301
G CL S S D + + D ++ +L + HD ++ + + + SA D IK+W
Sbjct: 78 GLCL-SGSKDKSVVLYDYQNGRLEDRWTGHDREITKVCYGASCNGMFSASRDKTIKMWQR 254
Query: 302 RQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVW 341
I +D +T + N +G N +W
Sbjct: 255 GNSHSIRDFIGHDMVVTAIHLNTDNTLLCSGSRDNTVRIW 374
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 5/244 (2%)
Frame = +3
Query: 66 SKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCS 125
SKD V +++++ + ++ GH + V Y + S +D+ I++WQ
Sbjct: 96 SKDKSVVLYDYQNGRLEDRWTGHDREITKVCYGASCNGMFSASRDKTIKMWQ-------- 251
Query: 126 IIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDM 185
+ + +IR F GH V + ++ D
Sbjct: 252 --RGNSHSIRD--------------------------------FIGHDMVVTAIHLNTDN 329
Query: 186 RLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCL 245
L+ SGS D TV +WD V + L N I Q + V+ V + P +
Sbjct: 330 TLLCSGSRDNTVRIWD------VETGACLRQN-NIPQ--------NLVTDVKWLPGSHLI 464
Query: 246 ISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLAS-----AGSDSKIKIWD 300
I + D +++I D R+ +++ + S + G F + G+ + +W
Sbjct: 465 IQAGEDKEVRIYDSRTLGIVRSFTKKQYIQMSCDVTADGQFCLTCSNGFGGNGCEATLWQ 644
Query: 301 LRQG 304
L G
Sbjct: 645 LSDG 656
>03156
Length = 1014
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Frame = +1
Query: 41 RSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPD 100
R F GH+ ++T + + S S+D+ V +W+ + + + V VK+ P
Sbjct: 163 RDFIGHDMVVTAIHLNTDNTLLCSGSRDNTVRIWDVETGACLRQNNIPQNLVTDVKWLPG 342
Query: 101 GETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMS----------FSADGGYXXXXX 150
I G+D+++R++ + G +RS + +ADG +
Sbjct: 343 SHLIIQAGEDKEVRIYDSRTL----------GIVRSFTKKQYIQMSCDVTADGQFCLTCS 492
Query: 151 -----XXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISP---DMRLVASGSDDKTVMLWDL 202
W+L D F GH+ + + + P DM L+A+ S D +V +W++
Sbjct: 493 NGFGGNGCEATLWQLSDGSIQNEFKGHREAIEACLFLPSNQDMTLIATASRDCSVRVWNM 672
Query: 203 NFQKIVSK 210
++ V +
Sbjct: 673 FTKECVCE 696
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%)
Frame = +1
Query: 208 VSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQH 267
+SK L+D ++ H +++V + + S+S D IK+ ++ I+
Sbjct: 13 LSKMGRLEDR--------WTGHDREITKVCYGASCNGMFSASRDKTIKMWQRGNSHSIRD 168
Query: 268 YNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQG 304
+ HD V +I ++ L S D+ ++IWD+ G
Sbjct: 169 FIGHDMVVTAIHLNTDNTLLCSGSRDNTVRIWDVETG 279
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Frame = +1
Query: 169 FAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSD 228
F GH V + ++ D L+ SGS D TV +WD V + L N I Q
Sbjct: 169 FIGHDMVVTAIHLNTDNTLLCSGSRDNTVRIWD------VETGACLRQN-NIPQ------ 309
Query: 229 HMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLA 288
+ V+ V + P +I + D +++I D R+ +++ + S + G F
Sbjct: 310 --NLVTDVKWLPGSHLIIQAGEDKEVRIYDSRTLGIVRSFTKKQYIQMSCDVTADGQFCL 483
Query: 289 S-----AGSDSKIKIWDLRQG 304
+ G+ + +W L G
Sbjct: 484 TCSNGFGGNGCEATLWQLSDG 546
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 30/82 (36%)
Frame = +1
Query: 260 RSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITT 319
+ +L + HD ++ + + + SA D IK+W I +D +T
Sbjct: 19 KMGRLEDRWTGHDREITKVCYGASCNGMFSASRDKTIKMWQRGNSHSIRDFIGHDMVVTA 198
Query: 320 VQFNQSGDYFATGGSQNLCMVW 341
+ N +G N +W
Sbjct: 199 IHLNTDNTLLCSGSRDNTVRIW 264
>13278
Length = 870
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Frame = +1
Query: 245 LISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQG 304
L S+SFD +++ ++ + H V S++ P G +LAS D + IW+++ G
Sbjct: 121 LASASFDSTVRLWEVERGLCLHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNVQTG 300
Query: 305 RQIYTLYSNDKDITTVQFNQSGD 327
+++ Y I V +N GD
Sbjct: 301 SLVHS-YKGTGGIFEVCWNHRGD 366
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Frame = +1
Query: 179 GVISPDMRLV-ASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVL 237
G +P+ L+ AS S D TV LW++ + +++ + H + V V
Sbjct: 91 GTSNPNTSLILASASFDSTVRLWEVE---------------RGLCLHTLTKHQEPVYSVA 225
Query: 238 FHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIK 297
F PDG L S SFD + I ++++ L+ Y + + + G + ++ SD +
Sbjct: 226 FSPDGKYLASGSFDKCVHIWNVQTGSLVHSYKG-TGGIFEVCWNHRGDKVGASASDGSVF 402
Query: 298 IWDLRQ 303
+ DLR+
Sbjct: 403 VLDLRK 420
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Frame = +1
Query: 271 HDAQVNSISIH-----PTG---------YFLASAGSDSKIKIWDLRQGRQIYTLYSNDKD 316
HD Q+ + I+ PTG LASA DS +++W++ +G ++TL + +
Sbjct: 31 HDLQLTTKEIYTIKWSPTGPGTSNPNTSLILASASFDSTVRLWEVERGLCLHTLTKHQEP 210
Query: 317 ITTVQFNQSGDYFATGGSQNLCMVW 341
+ +V F+ G Y A+G +W
Sbjct: 211 VYSVAFSPDGKYLASGSFDKCVHIW 285
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 62 VASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLW 116
+AS S DS V +W + H+ VY V +SPDG+ +AS D+ + +W
Sbjct: 121 LASASFDSTVRLWEVERGLCLHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIW 285
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 158 WRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKY 211
W ++ + + H+ V S SPD + +ASGS DK V +W++ +V Y
Sbjct: 157 WEVERGLCLHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNVQTGSLVHSY 318
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +1
Query: 46 HEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIA 105
H++ + F P + +AS S D V++WN + + G G ++ V ++ G+ +
Sbjct: 199 HQEPVYSVAFSPDGKYLASGSFDKCVHIWNVQTGSLVHSYKG-TGGIFEVCWNHRGDKVG 375
Query: 106 SCGQDRQI 113
+ D +
Sbjct: 376 ASASDGSV 399
>03395
Length = 2795
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 3/174 (1%)
Frame = +2
Query: 172 HKNWVRSGVISPDMRLVASGSDDKTVMLWDL--NFQKIVSKYSTLDDNVKISQINSYSDH 229
HK V + I + R S S D + ++WDL N + + +TL
Sbjct: 143 HKGKVTAIQIHTNDRCCVSASTDGSTIIWDLITNTRSQIVLANTL--------------- 277
Query: 230 MDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHY-NAHDAQVNSISIHPTGYFLA 288
V F +++S DHKI ++ L++ + +N+I I G +
Sbjct: 278 ---FKCVCFGGKDLHILTSGTDHKIGYWEVGDGGLLRELEGSQTGAINTIDIDRDGQTIL 448
Query: 289 SAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWK 342
+ G DS +K+W +G +T + IT + + Y +GG +WK
Sbjct: 449 TGGEDSLLKLWRYNEGEVTHTGIGHSNQITKARICPNRHYIVSGGEDGALHIWK 610
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 5/197 (2%)
Frame = +2
Query: 180 VISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFH 239
V S +LV+ G + + V +WD+ + K + + + +H V+ + H
Sbjct: 20 VTSCGTKLVSGGGEGQ-VRVWDIVKDMLTGK-------TRGDLVANMKEHKGKVTAIQIH 175
Query: 240 PDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIW 299
+ C +S+S D I D+ +N Q A + + + ++G+D KI W
Sbjct: 176 TNDRCCVSASTDGSTIIWDLITNTRSQIVLA-NTLFKCVCFGGKDLHILTSGTDHKIGYW 352
Query: 300 DLRQGRQIYTLY-SNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQ----NIQNIEQ 354
++ G + L S I T+ ++ G TGG +L +W+ N + I + Q
Sbjct: 353 EVGDGGLLRELEGSQTGAINTIDIDRDGQTILTGGEDSLLKLWRYNEGEVTHTGIGHSNQ 532
Query: 355 VQRSTVRQNDVEYSSGG 371
+ ++ + N SGG
Sbjct: 533 ITKARICPNRHYIVSGG 583
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 1/198 (0%)
Frame = +2
Query: 4 TTIASSAVASQKQTQSKLGNTSSKITEQQTTHDPALSRSFRGHEDIITCADFDPKMRQVA 63
T+ + V+ + Q ++ + + +T D L + + H+ +T R
Sbjct: 23 TSCGTKLVSGGGEGQVRVWDIVKDMLTGKTRGD--LVANMKEHKGKVTAIQIHTNDRCCV 196
Query: 64 SCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSK 123
S S D +W+ R + V CV + I + G D +I W+
Sbjct: 197 SASTDGSTIIWDLITNTRS-QIVLANTLFKCVCFGGKDLHILTSGTDHKIGYWEVGDGGL 373
Query: 124 CSIIKA-HCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVIS 182
++ GAI ++ DG WR + + + GH N + I
Sbjct: 374 LRELEGSQTGAINTIDIDRDGQTILTGGEDSLLKLWRYNEGEVTHTGIGHSNQITKARIC 553
Query: 183 PDMRLVASGSDDKTVMLW 200
P+ + SG +D + +W
Sbjct: 554 PNRHYIVSGGEDGALHIW 607
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 36 DPALSRSFRGHE-DIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYC 94
D L R G + I D D + + + +DS++ +W + + +GH +
Sbjct: 362 DGGLLRELEGSQTGAINTIDIDRDGQTILTGGEDSLLKLWRYNEGEVTHTGIGHSNQITK 541
Query: 95 VKYSPDGETIASCGQDRQIRLWQ 117
+ P+ I S G+D + +W+
Sbjct: 542 ARICPNRHYIVSGGEDGALHIWK 610
>00825
Length = 1821
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 124/314 (39%), Gaps = 21/314 (6%)
Frame = -2
Query: 68 DSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQ---------- 117
D + WN QQ + H G V+ + G+ SCG D+ I+ W
Sbjct: 1808 DGELICWNLPKQQMACRVQAHDGIVHGMAAHSSGQYFFSCGSDKTIKQWSLDPEGTIAPE 1629
Query: 118 --NTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNW 175
NT+ +KC I + + F G W + + M SF+
Sbjct: 1628 PVNTLLAKC-IYTSLDHHWKDDIFVTSGS---------RVDVWDEKRSEPMRSFSWGVES 1479
Query: 176 VRSGVISP-DMRLVASGSDDKTVMLWDLN----FQKIVSKYSTLDDNVKISQINSYSDHM 230
V +P + L+ + + D++++L+D+ +K+V K T N+ S
Sbjct: 1478 VHHVKFNPVETYLLGAAAHDRSILLYDMRGSAPLRKVVMKMRT----------NALS--- 1338
Query: 231 DTVSQVLFHP-DGTCLISSSFDHKIKITDIRSNKL-IQHYNAHDAQVNSISIHPTGYFLA 288
++P + + S++ D + D+R + + + H A V + PTG
Sbjct: 1337 -------WNPMEAFTITSANEDGNLYTFDMRKLSMPLNMHRDHTAAVMDVDYCPTGREFV 1179
Query: 289 SAGSDSKIKIWDLRQG--RQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFD 346
SAG D I+I+ + +G R++Y + + +V +++ Y + + VWK
Sbjct: 1178 SAGYDKVIRIFPVDKGHSREVYHTKRMQR-VGSVVWSRDSKYIFSASDEMNIRVWKAVAW 1002
Query: 347 QNIQNIEQVQRSTV 360
+ + + Q++ V
Sbjct: 1001 EALGKLAPRQKAAV 960
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/246 (18%), Positives = 99/246 (40%), Gaps = 36/246 (14%)
Frame = -2
Query: 158 WRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSK------- 210
W L ++ C H V + S DKT+ W L+ + ++
Sbjct: 1790 WNLPKQQMACRVQAHDGIVHGMAAHSSGQYFFSCGSDKTIKQWSLDPEGTIAPEPVNTLL 1611
Query: 211 ----YSTLD------------------DNVKISQINSYSDHMDTVSQVLFHPDGTCLI-S 247
Y++LD D + + S+S +++V V F+P T L+ +
Sbjct: 1610 AKCIYTSLDHHWKDDIFVTSGSRVDVWDEKRSEPMRSFSWGVESVHHVKFNPVETYLLGA 1431
Query: 248 SSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYF-LASAGSDSKIKIWDLRQGRQ 306
++ D I + D+R + ++ + N++S +P F + SA D + +D+R+
Sbjct: 1430 AAHDRSILLYDMRGSAPLRKV-VMKMRTNALSWNPMEAFTITSANEDGNLYTFDMRKLSM 1254
Query: 307 IYTLYSND-KDITTVQFNQSGDYFATGGSQNLCMVWKTN--FDQNIQNIEQVQR--STVR 361
++ + + V + +G F + G + ++ + + + + +++QR S V
Sbjct: 1253 PLNMHRDHTAAVMDVDYCPTGREFVSAGYDKVIRIFPVDKGHSREVYHTKRMQRVGSVVW 1074
Query: 362 QNDVEY 367
D +Y
Sbjct: 1073 SRDSKY 1056
>08679
Length = 2028
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = -3
Query: 245 LISSSFDHKIKITDIRS--NKLIQHYNAHDAQVNSISIHPTG-YFLASAGSDSKIKIWDL 301
L+ + F + I D R+ K Q Y D + S+S+HPT +F +AGSD K +WDL
Sbjct: 1630 LLLAQFMGDVSIIDTRTYGRKAEQTYTVCDTYLRSVSVHPTNPHFFVTAGSDMKXSVWDL 1451
Query: 302 RQ 303
R+
Sbjct: 1450 RK 1445
>19140
Length = 573
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Frame = -3
Query: 164 KFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQI 223
K M GH + V++ V++ D SGS D T+ LW L Q+ V+ + D+ V Q
Sbjct: 511 KLM-KLKGHTDNVKALVLNRDGTQCLSGSSDGTIRLWSLGQQRCVATFRVHDEGVWALQA 335
Query: 224 NSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPT 283
N T L S DH++ TDI++ + A V + + PT
Sbjct: 334 NESF---------------TTLYSGGRDHQVWATDIKNPDNRELICEEKAPVLKLELTPT 200
Query: 284 G-YFLASAGSDSKIKIWDLR 302
L A +DS IK W +R
Sbjct: 199 DPPSLWVATTDSCIKNWPVR 140
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%)
Frame = -3
Query: 260 RSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITT 319
R+ + H V ++ ++ G S SD I++W L Q R + T +D+ +
Sbjct: 523 RTCHKLMKLKGHTDNVKALVLNRDGTQCLSGSSDGTIRLWSLGQQRCVATFRVHDEGVWA 344
Query: 320 VQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIEQV 355
+Q N+S +GG + VW T+ +N N E +
Sbjct: 343 LQANESFTTLYSGGRDH--QVWATDI-KNPDNRELI 245
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = -3
Query: 43 FRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGE 102
+GH D + + Q S S D + +W+ Q+ F H V+ ++ +
Sbjct: 499 LKGHTDNVKALVLNRDGTQCLSGSSDGTIRLWSLGQQRCVATFRVHDEGVWALQANESFT 320
Query: 103 TIASCGQDRQI 113
T+ S G+D Q+
Sbjct: 319 TLYSGGRDHQV 287
>15780
Length = 735
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -1
Query: 245 LISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQ 303
L ++ DH + + DI S + H AH V ++ G LAS G D+ I++WDL +
Sbjct: 729 LSTAGADHTVIVWDIASGTAVAHLTAHTDTVYALCFSRDGTVLASGGMDNSIRLWDLAR 553
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = -1
Query: 286 FLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVW 341
+L++AG+D + +WD+ G + L ++ + + F++ G A+GG N +W
Sbjct: 732 YLSTAGADHTVIVWDIASGTAVAHLTAHTDTVYALCFSRDGTVLASGGMDNSIRLW 565
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = -1
Query: 186 RLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCL 245
+ +++ D TV++WD+ V+ + H DTV + F DGT L
Sbjct: 735 KYLSTAGADHTVIVWDIASGTAVAHLTA---------------HTDTVYALCFSRDGTVL 601
Query: 246 ISSSFDHKIKITDI 259
S D+ I++ D+
Sbjct: 600 ASGGMDNSIRLWDL 559
>02960
Length = 1577
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 104/280 (37%), Gaps = 9/280 (3%)
Frame = +2
Query: 66 SKDSIVYVWNFKPQQRP----FKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQ 121
S D VW ++ + GH +V CV SPD + + + D+ ++LW
Sbjct: 674 SHDQTALVWQWQRETNEVDCRLSCRGHAASVDCVAVSPDSQQMCTGSWDKMLKLWSTD-- 847
Query: 122 SKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVI 181
C S + Q + + + +GH V S V
Sbjct: 848 ---------CNVDGDQSEDTERPSKKKKSAKSTT-----QTRVPVLTLSGHAEAV-SAVR 982
Query: 182 SPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPD 241
D V + S D ++ LWDL+ +Q S V V + P
Sbjct: 983 WLDPHRVVTSSWDHSLRLWDLH----------------TAQQTSLIQGSKAVLDVAYSPL 1114
Query: 242 GTCLISSSFDHKIKITDIRSNK---LIQHYNAHDAQVNSISIHPTGYFLASAGS-DSKIK 297
LI+ S D +++ D R ++ + + +H V + PT L +GS D+ +K
Sbjct: 1115SHMLITGSADRHVRLVDPRCSEGETVKCAFTSHTGWVTGVDWSPTREHLFLSGSYDNVLK 1294
Query: 298 IWDLRQGRQ-IYTLYSNDKDITTVQFNQSGDYFATGGSQN 336
+WD R + +Y + ++ I V ++ + +GG N
Sbjct: 1295LWDTRSPKATLYDMNWHEDRILAVDWSIP-ELLLSGGVDN 1411
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 33/267 (12%)
Frame = +2
Query: 31 QQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNF---------KPQQR 81
Q+ T++ S RGH + C P +Q+ + S D ++ +W+ + +R
Sbjct: 707 QRETNEVDCRLSCRGHAASVDCVAVSPDSQQMCTGSWDKMLKLWSTDCNVDGDQSEDTER 886
Query: 82 P-----------------FKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKC 124
P GH AV V++ D + + D +RLW +
Sbjct: 887 PSKKKKSAKSTTQTRVPVLTLSGHAEAVSAVRWL-DPHRVVTSSWDHSLRLWDLHTAQQT 1063
Query: 125 SIIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKK------FMCSFAGHKNWVRS 178
S+I+ A+ +++S RL D + C+F H WV
Sbjct: 1064SLIQGS-KAVLDVAYSPLSHMLITGSADRHV---RLVDPRCSEGETVKCAFTSHTGWVTG 1231
Query: 179 GVISPDMR-LVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVL 237
SP L SGS D + LWD K +TL D +N + D + V +
Sbjct: 1232VDWSPTREHLFLSGSYDNVLKLWDTRSPK-----ATLYD------MNWHEDRILAVDWSI 1378
Query: 238 FHPDGTCLISSSFDHKIKITDIRSNKL 264
P+ L+S D+K+ + S KL
Sbjct: 1379--PE--LLLSGGVDNKLHVFSYSSAKL 1447
>13509
Length = 572
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = +2
Query: 275 VNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGS 334
VN IS HP L++ GSD + WD ++ T D+ ITT FN G+ FA S
Sbjct: 368 VNDISFHPVHGTLSTVGSDGRFSFWDKDARTKLKTSEQFDQPITTCNFNAQGNIFAYASS 547
>14500
Length = 1238
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 71 VYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQ 117
+ +W + R + GH V + SPDGET+ S D +RLW+
Sbjct: 411 LIIWKYPAMSRVAELTGHTARVLHMAMSPDGETVVSAAADETLRLWK 551
>18981
Length = 407
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 44/80 (55%)
Frame = -2
Query: 245 LISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQG 304
+IS++ D +++ +++ L+ H+ V + I+ G + S D + +W++ G
Sbjct: 379 IISAATDRTLRVWCLKNTCLLHTLRGHNDDVECVCIY--GRRVVSGSWDKTLIVWEVDTG 206
Query: 305 RQIYTLYSNDKDITTVQFNQ 324
R ++ L+ + + IT VQF++
Sbjct: 205 RPVHQLHGHTEAITAVQFDE 146
Score = 32.0 bits (71), Expect = 0.69, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = -2
Query: 39 LSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYS 98
L + RGH D + C R+V S S D + VW + + GH A+ V++
Sbjct: 322 LLHTLRGHNDDVECVCI--YGRRVVSGSWDKTLIVWEVDTGRPVHQLHGHTEAITAVQFD 149
Query: 99 PDGETIASCGQDRQIRLW 116
+G+ + S D +R W
Sbjct: 148 -EGKAV-SGSADGDVRTW 101
>37180
Length = 681
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +1
Query: 269 NAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDY 328
N HD +++ + HPT + ++ D ++WD R + ++ T SGD
Sbjct: 10 NGHDQELSDVHAHPTQRLVVTSSKDMTFRLWDFRDSALLVNVFQGHTQPVTSAVFASGDK 189
Query: 329 FATGGSQNLCMVW 341
+G VW
Sbjct: 190 VVSGSDDRTVRVW 228
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 224 NSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIR-SNKLIQHYNAHDAQVNSISIHP 282
N + H +S V HP +++SS D ++ D R S L+ + H V S ++
Sbjct: 1 NVLNGHDQELSDVHAHPTQRLVVTSSKDMTFRLWDFRDSALLVNVFQGHTQPVTS-AVFA 177
Query: 283 TGYFLASAGSDSKIKIWDLRQGR 305
+G + S D +++WD+R R
Sbjct: 178 SGDKVVSGSDDRTVRVWDMRNMR 246
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +1
Query: 45 GHEDIITCADFDPKMRQVASCSKDSIVYVWNFKPQQRPFK-FVGHKGAVYCVKYSPDGET 103
GH+ ++ P R V + SKD +W+F+ F GH V ++ G+
Sbjct: 13 GHDQELSDVHAHPTQRLVVTSSKDMTFRLWDFRDSALLVNVFQGHTQPVTSAVFAS-GDK 189
Query: 104 IASCGQDRQIRLW-QNTVQSKCSIIKAHCGAIRSMSF 139
+ S DR +R+W ++S + I+ R + F
Sbjct: 190 VVSGSDDRTVRVWDMRNMRSPIATIRTDSAVNRFV*F 300
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 158 WRLQDKKFMCS-FAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDL 202
W +D + + F GH V S V + ++V SGSDD+TV +WD+
Sbjct: 100 WDFRDSALLVNVFQGHTQPVTSAVFASGDKVV-SGSDDRTVRVWDM 234
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +1
Query: 183 PDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDG 242
P RLV + S D T LWD ++ +N + H V+ +F G
Sbjct: 49 PTQRLVVTSSKDMTFRLWDFRDSALL--------------VNVFQGHTQPVTSAVF-ASG 183
Query: 243 TCLISSSFDHKIKITDIRSNK 263
++S S D +++ D+R+ +
Sbjct: 184 DKVVSGSDDRTVRVWDMRNMR 246
>04358
Length = 2430
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Frame = +1
Query: 190 SGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLF-HPDGTCLISS 248
+G D V NF +V YS +++Q N+ + H D +S + F H D ++++
Sbjct: 1318 TGGADSLVAAASSNF--MVRLYS----RCRLAQTNTLTGHDDVISSIRFLHTDPGLIMTA 1479
Query: 249 SFDHKIKITDIRS--NKLIQHYNAH---DAQVNSISIHPTGYFLAS----AGSDSKIKIW 299
S DH ++I D R+ +K +Q ++ V S ++ + L + + D+ + W
Sbjct: 1480 SHDHTVRIWDPRASVSKEVQRFSGEQNTKCSVLSCDVNISDRVLCAGTEMSNDDAYLLFW 1659
Query: 300 DLRQGRQIYTLY--SNDKDITTVQFNQSGDYFATGGSQN 336
D R+ + + Y S+ DIT V F + + GS +
Sbjct: 1660 DRRKDK-LLGCYEDSHHDDITQVHFGPTSEKTLLTGSTD 1773
>21921
Length = 1341
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = -1
Query: 255 KITDIRSNKLIQH--YNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYS 312
K D+R Q Y H V SI PTG +L S D I+ W++ GR + TL
Sbjct: 540 KPKDLRPFPTTQALVYKGHTGIVRSICPDPTGQWLVSGSDDGTIRFWEVSSGRCMKTLQV 361
Query: 313 NDKDITTVQFNQSGDYFATGGSQN 336
+T+V +N + + N
Sbjct: 360 GGC-VTSVAWNPNPSLCVVAATLN 292
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 81/185 (43%), Gaps = 13/185 (7%)
Frame = -1
Query: 169 FAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSD 228
+ GH VRS P + + SGSDD T+ W+++ + +K Q+
Sbjct: 495 YKGHTGIVRSICPDPTGQWLVSGSDDGTIRFWEVSSGRC----------MKTLQVGG--- 355
Query: 229 HMDTVSQVLFHPDGT-CLISSSFDHKI---------KITDIRSNKLIQHYNAHDAQVNSI 278
V+ V ++P+ + C+++++ + + K+ ++KL+ + A +S
Sbjct: 354 ---CVTSVAWNPNPSLCVVAATLNTTVLLINPGLGDKLVVSNTDKLLLA-SEDQASSSSE 187
Query: 279 SIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFAT---GGSQ 335
P + +++ + D G ++ + K+++ V ++ GDYFAT G +
Sbjct: 186 KEQPVDWV------RTELNVEDYTSGVRLR--LEHPKEVSKVTWHAKGDYFATVMPKGDK 31
Query: 336 NLCMV 340
+C +
Sbjct: 30 IVCAL 16
>15972
Length = 1069
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 85 FVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGG 144
F GHKG V + P G+ + QDR +RLW N + + + I A S+ ++ G
Sbjct: 225 FSGHKGPVRHLAVHPSGKLTLTVSQDRTLRLWNN-MNGRIAFISNMKEAAESVRWAPGGL 401
Query: 145 Y 145
Y
Sbjct: 402 Y 404
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 268 YNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDIT-TVQFNQSG 326
++ H V +++HP+G + D +++W+ GR + SN K+ +V++ G
Sbjct: 225 FSGHKGPVRHLAVHPSGKLTLTVSQDRTLRLWNNMNGRIAF--ISNMKEAAESVRWAPGG 398
Query: 327 DYFATG 332
Y+
Sbjct: 399 LYYVVA 416
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 168 SFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWD 201
+F+GHK VR + P +L + S D+T+ LW+
Sbjct: 222 TFSGHKGPVRHLAVHPSGKLTLTVSQDRTLRLWN 323
>14555
Length = 627
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -2
Query: 265 IQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQI 307
+Q + H+A +N + +P+G A+ D+ +++DLR R++
Sbjct: 620 VQMFEGHEADINCVRFYPSGDAFATGSDDATCRLFDLRADREV 492
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 66 SKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLW 116
+ D V VW+ R GH V C++ SPDG ++ + D +R+W
Sbjct: 409 TNDYTVNVWDALKGMRSTILYGHDNRVSCLRISPDGTSLCTGSWDYTLRIW 257
Score = 27.7 bits (60), Expect(2) = 0.045, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -3
Query: 244 CLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIW 299
C + + D+ + + D HD +V+ + I P G L + D ++IW
Sbjct: 424 CCLGVTNDYTVNVWDALKGMRSTILYGHDNRVSCLRISPDGTSLCTGSWDYTLRIW 257
Score = 27.3 bits (59), Expect(2) = 0.045, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 169 FAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKY 211
F GH+ + P A+GSDD T L+DL + V+ Y
Sbjct: 611 FEGHEADINCVRFYPSGDAFATGSDDATCRLFDLRADREVNCY 483
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 313 NDKDITTVQFNQSGDYFATGGSQNLCMVWKTNFDQNIQNIEQVQRSTVRQNDVEYSSGG 371
++ DI V+F SGD FATG C ++ D+ + N + + N V++S G
Sbjct: 602 HEADINCVRFYPSGDAFATGSDDATCRLFDLRADREV-NCYRKESIIFGCNAVDFSVSG 429
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 85 FVGHKGAVYCVKYSPDGETIASCGQDRQIRLW 116
F GH+ + CV++ P G+ A+ D RL+
Sbjct: 611 FEGHEADINCVRFYPSGDAFATGSDDATCRLF 516
>11493
Length = 535
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 57 PKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIR 114
P + SC D + VW+ + +F GH C+ SPDG + + G D +R
Sbjct: 177 PDSKVCFSCCSDGNIAVWDLHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTVR 4
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Frame = -2
Query: 95 VKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAH----CGAIRSMSFSADGGYXXXXX 150
VK PDG T+ G+ + +W + S IKA A +++ S D
Sbjct: 321 VKLLPDGRTLIVGGEASNLSIWD--LASPTPRIKAELTSAAPACYALAISPDSKVCFSCC 148
Query: 151 XXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTV 197
W L ++ + F GH + ISPD + +G D TV
Sbjct: 147 SDGNIAVWDLHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTV 7
Score = 31.6 bits (70), Expect = 1.00, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = -2
Query: 181 ISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHP 240
ISPD ++ S D + +WDL+ + +V ++ H D S + P
Sbjct: 183 ISPDSKVCFSCCSDGNIAVWDLHNEILVRQFQ---------------GHTDGASCIDISP 49
Query: 241 DGTCLISSSFDHKIK 255
DG+ L + D+ ++
Sbjct: 48 DGSRLWTGGLDNTVR 4
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Frame = -2
Query: 233 VSQVLFHPDGTCLISSSFDHKIKITDIRSN--KLIQHYNAHDAQVNSISIHPTGYFLASA 290
+ V PDG LI + I D+ S ++ + +++I P S
Sbjct: 330 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAAPACYALAISPDSKVCFSC 151
Query: 291 GSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQN 336
SD I +WDL + + + + + G TGG N
Sbjct: 150 CSDGNIAVWDLHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDN 13
>19863
Length = 502
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 61 QVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNTV 120
Q+ S S D + VW+ + + + GH G V V +S D + SC D +R+W
Sbjct: 13 QLVSGSSDMSIVVWDVENGVQKLRLQGHAGWVNDVHFSQDQCWLLSCSNDNTVRIWNIEE 192
Query: 121 QSKCSIIKAH 130
+ I+ H
Sbjct: 193 SDQIPIVMEH 222
>15745
Length = 1183
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +2
Query: 191 GSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCL-ISSS 249
G + V++WDLN ++ + + I ++ ++P C I+++
Sbjct: 485 GVCEDRVIMWDLNVASSSAQQTDM--------ITLEGKGQPRLTCGRWNPHHNCAQIATA 640
Query: 250 FDHKIKITDIRSNK-LIQHYNAHDAQVNSISIHPTG-YFLASAGSDSKIKIWDLR 302
+ I+ D+RS + Q AH V + +P Y+LAS G D ++K WD R
Sbjct: 641 NEATIRGWDLRSKQQTYQMEGAHGQLVRDLDFNPNRQYYLASCGDDCRVKFWDTR 805
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +2
Query: 50 ITCADFDPK--MRQVASCSKDSIVYVWNFKPQQRPFKFVG-HKGAVYCVKYSPDGET-IA 105
+TC ++P Q+A+ + ++ + W+ + +Q+ ++ G H V + ++P+ + +A
Sbjct: 587 LTCGRWNPHHNCAQIAT-ANEATIRGWDLRSKQQTYQMEGAHGQLVRDLDFNPNRQYYLA 763
Query: 106 SCGQDRQIRLW 116
SCG D +++ W
Sbjct: 764 SCGDDCRVKFW 796
>26107
Length = 1338
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 42/229 (18%)
Frame = -3
Query: 158 WRLQDKKFMCSFAGHKNWVRSGVISPDMRL-VASGSDDKTVMLWDLNFQKIVSKYSTLDD 216
W ++ + +F GHK VRS P ASG+ D +MLWD V+K
Sbjct: 1006 WDVETTTKVTTFIGHKCSVRSVASCPSSPAQCASGARDGHIMLWDSR----VNKKREHQP 839
Query: 217 NVKISQINSYSDH-------------------MDT---VSQVLFHPDGTCLISSSFDHKI 254
++ Q+ S H MDT V+ VL+ D + S + D +
Sbjct: 838 CSQVHQVCPQSGHQSKPAKHRRIHRAAGPKGVMDTQQSVTCVLYQTDNLIISSGANDGCV 659
Query: 255 KITDIR--------SNKLIQH---YNAHDAQVNSI---SIHPTGYFLASAGSDSKIKIWD 300
K+ D R S + H Y H ++ I + P L + +D+K+ +
Sbjct: 658 KMWDTRKWYTNTTTSLPVPVHTFDYPGHMRRLKGIVTMCMDPWKSQLFVSYTDNKVYRYQ 479
Query: 301 L----RQGRQ-IYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTN 344
L R+ ++ +Y + ND + G Y +G +N ++W+ +
Sbjct: 478 LAGQYREPQEYVYAGHRNDTFFVRCAISPDGKYLLSGSGRNTGVIWEVD 332
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = -3
Query: 43 FRGHED---IITCADFDPKMRQVASCSKDSIVYVWNF-KPQQRPFKFVGHKGAVYCVKY- 97
+ GH + + CA P + + S S + +W KP +RP +GH V V +
Sbjct: 442 YAGHRNDTFFVRCA-ISPDGKYLLSGSGRNTGVIWEVDKPNKRPLFLIGHTEDVSAVDWC 266
Query: 98 SPDGETIASCGQDRQIRLWQNTVQSK 123
S D +A+ DR +R+W+ + +
Sbjct: 265 STDVCKLATVSDDRSLRIWRPDARER 188
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 61 QVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGET-IASCGQDRQIRLWQNT 119
Q + S D V +W+ + + F+GHK +V V P AS +D I LW +
Sbjct: 1045 QCLTASGDQTVALWDVETTTKVTTFIGHKCSVRSVASCPSSPAQCASGARDGHIMLWDSR 866
Query: 120 VQSK 123
V K
Sbjct: 865 VNKK 854
>38362
Length = 1255
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 114/297 (38%), Gaps = 8/297 (2%)
Frame = -1
Query: 57 PKMRQV-ASCSKDSIVYVWNFKPQQRPF----KFVGHKGAVYCVKYSPD--GETIASCGQ 109
P+ QV A+CS D VW + Q F V + +V VK++P G +A+
Sbjct: 1216 PEFGQVLATCSFDRTAAVWEKEAGQNHFLKRTSLVDSRTSVTDVKFAPKHLGLQLATSSA 1037
Query: 110 DRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSF 169
D IR+++ A+ M+ S W LQ +F C
Sbjct: 1036 DGIIRIYE---------------AVDVMNLS----------------NWSLQ-HEFNCRI 953
Query: 170 A-GHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSD 228
+ W S V P ++A+GSDD + + V Y D N K +++ S
Sbjct: 952 SCSCMTWNPSRVHPP---MIATGSDDS-----NPSSGAKVGIYEYSDVNRKWNKVESLGT 797
Query: 229 HMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLA 288
D V + F P+ + S+ H + I +++ +S+ P +
Sbjct: 796 VTDPVHDIYFAPN----VGRSY-HLLAIAS--------------KELSIVSLKPLRKEPS 674
Query: 289 SAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVWKTNF 345
S S SK +I RQ+ S+D + V +N +G + G+ +WK N+
Sbjct: 673 SGSSSSKFEI------RQVGLFDSHDSQVWRVSWNVTGTILVSSGADGCVRIWKANY 521
>30295
Length = 593
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 287 LASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMVW 341
L SA D K+ +WD +++ + + T + SG Y A GG N+C ++
Sbjct: 290 LVSASQDGKLIVWDGYTTNKVHAIPLRSSWVMTCAYAPSGGYVACGGLDNICSIY 454
>31054
Length = 392
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = -2
Query: 158 WRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDL----NFQKI 207
W+ D F+ + +GH + + ++ D LV SG+D+ T+ LWD NFQ+I
Sbjct: 334 WKFPDGNFIQNLSGHNAIINTLAVNSDGVLV-SGADNGTMHLWDWRTGYNFQRI 176
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -2
Query: 264 LIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYS 312
IQ+ + H+A +N+++++ G L S + + +WD R G +++
Sbjct: 313 FIQNLSGHNAIINTLAVNSDG-VLVSGADNGTMHLWDWRTGYNFQRIHA 170
>01598
Length = 1545
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 20/183 (10%)
Frame = +1
Query: 182 SPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPD 241
SPD A G+D+ +V + + KIV+ T + IN H Q P
Sbjct: 1000 SPDQNAAAVGTDEGSVYVVTIQDLKIVAAIRT-----QQKLINCVRWHPRLTDQ---SPA 1155
Query: 242 GT-C---LISSSFDHKIKITDIRS----------NKLI----QHYNAHDAQVNSISIHP- 282
G+ C L ++ D I + D+ S LI + + H +V +S P
Sbjct: 1156 GSPCCHWLAAAGNDQVIHVVDLASVFAEREGDKETSLILTSLRELSGHSQRVTDMSWSPH 1335
Query: 283 TGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQ-SGDYFATGGSQNLCMVW 341
L S G D++ +WD+++G + + + T QF+ D TGGS VW
Sbjct: 1336 HDARLVSVGYDAEAFVWDVQKGTALAQFKGHMGRLLTCQFSGLDPDLVMTGGSDASVHVW 1515
Query: 342 KTN 344
+ +
Sbjct: 1516 RVS 1524
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 110/307 (35%), Gaps = 38/307 (12%)
Frame = +1
Query: 52 CADFDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSP-DGETIASCGQD 110
CA P + + + ++D V +W+ + + G VYCV+ SP D +A D
Sbjct: 397 CAS-GPDSKTLCTFAQDRQVVLWDLETMEAVASMATLGGHVYCVRTSPIDPGRVAVGVGD 573
Query: 111 RQIR---------------LWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXXXXXXX 155
IR LWQ ++SK + + H + F D G
Sbjct: 574 SMIRTWNMSNKTNPYDVTTLWQG-IKSKVTAVAWHPTKEGWLGFGTDDGRIGVFDV---- 738
Query: 156 XXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVS------ 209
L K S H R+ + S +D K+ L+ + KI+
Sbjct: 739 ----LSHKMPTLSNTFHH---RTAYVVCWGPASLSPTDGKSFSLYSVGDCKILEHSSAVL 897
Query: 210 -----KYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKL 264
K + +D KI +NS +++ + PD + + + + I+ K+
Sbjct: 898 SRGEKKANAIDITQKIGAVNSDQVKGLKATELSWSPDQNAAAVGTDEGSVYVVTIQDLKI 1077
Query: 265 IQHYNAHDAQVNSISIH-----------PTGYFLASAGSDSKIKIWDLRQGRQIYTLYSN 313
+ +N + H P ++LA+AG+D I + DL ++
Sbjct: 1078VAAIRTQQKLINCVRWHPRLTDQSPAGSPCCHWLAAAGNDQVIHVVDL---ASVFAEREG 1248
Query: 314 DKDITTV 320
DK+ + +
Sbjct: 1249DKETSLI 1269
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 41 RSFRGHEDIITCADFDPKM-RQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSP 99
R GH +T + P ++ S D+ +VW+ + +F GH G + ++S
Sbjct: 1282 RELSGHSQRVTDMSWSPHHDARLVSVGYDAEAFVWDVQKGTALAQFKGHMGRLLTCQFSG 1461
Query: 100 -DGETIASCGQDRQIRLWQNTVQS 122
D + + + G D + +W+ + Q+
Sbjct: 1462 LDPDLVMTGGSDASVHVWRVSQQA 1533
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 284 GYFLASAGSDSKIKIWDLRQGRQIY 308
G +A+ D I++W L QG+QI+
Sbjct: 100 GCLIATGSKDRTIRVWTLSQGKQIF 174
>01249
Length = 1743
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = -1
Query: 266 QHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQS 325
QH +V+ + + P G F ++ S+ KI IW++ G + L S+ + T +QF
Sbjct: 1509 QHKIVCPGKVSVLVVSPDGLFCLASISE-KIYIWEMTGG-SLVGLLSDFNEATKIQFTDD 1336
Query: 326 GDYFATGGSQNLCMVWKTNFDQNIQNIEQVQR 357
G F S +W +F + + Q R
Sbjct: 1335 GSQFVVATSSGHLNIW--DFARVVTTTSQRAR 1246
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 38 ALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWNFK 77
A R +GH D +TC F +++AS S++ V +WN +
Sbjct: 942 AGERVLQGHSDAVTCLAFSSDGQRLASGSQNGKVIIWNME 823
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 87 GHKGAVYCVKYSPDGETIASCGQDRQIRLW 116
GH AV C+ +S DG+ +AS Q+ ++ +W
Sbjct: 921 GHSDAVTCLAFSSDGQRLASGSQNGKVIIW 832
>27681
Length = 465
Score = 35.0 bits (79), Expect = 0.099, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Frame = +2
Query: 281 HPTGYFLASAGSDSKIKIWDL-----RQGRQIY---------TLYSNDKDITTVQFNQSG 326
+PT LAS DS +IW++ Q+ T ++KD+T++ +N G
Sbjct: 20 NPTNDLLASGSGDSTARIWNMTSETPNNANQLVLRHCIQKGGTEVPSNKDVTSLDWNSEG 199
Query: 327 DYFATGGSQNLCMVWKTN 344
ATG +W+T+
Sbjct: 200 TLLATGSYDGYARLWRTD 253
>38177
Length = 430
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 43/97 (44%)
Frame = +3
Query: 94 CVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXXXXXX 153
C+ ++P+G + + + LW + +I++AH ++R+M +S +
Sbjct: 3 CLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDVSVRAMRWSNHDQWMVTADHSG 182
Query: 154 XXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVAS 190
W+ + + F GHK +R ++P R A+
Sbjct: 183 YIKYWQ-SNMNNVKMFQGHKEPIRGVRLAPPGRTHAT 290
>13890
Length = 630
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Frame = +1
Query: 55 FDPKMRQVASCSKDSIVYVWNFKPQQRPFKFVGHK---GAVYCVKYSPDGETIASCG--- 108
F P + + + VW+ + + P + + HK G V V +S DG+ + SCG
Sbjct: 4 FHPVTPHLVATGTTDCIQVWDVRHPEVPVRVLTHKEQLGQVQDVMFSHDGQEVFSCGDVV 183
Query: 109 ----QDRQIRLW 116
DR I W
Sbjct: 184 SRESSDRSIMAW 219
>27806
Length = 419
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -1
Query: 247 SSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIW 299
++S DH +I I + + Y H VN++ HP + +A D +W
Sbjct: 374 TASADHTARIYSIETGACVLTYGGHQGSVNAVRFHPGQDLVLTASGDHTAHVW 216
>16105
Length = 960
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 3/169 (1%)
Frame = -2
Query: 170 AGHKNWVRSGVISP-DMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSD 228
AGHK V P + ++AS SDD TV +W + +V+ + +
Sbjct: 584 AGHKGAVLDIQWCPHNDNVIASASDDCTVKVWQIPDSGLVTNLT--------DPVVDLVG 429
Query: 229 HMDTVSQVLFHPDG-TCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFL 287
H +++HP L+S+ D+KI ++ + + + + D + +S + G L
Sbjct: 428 HQKRCCLIVWHPSAQNVLVSAGADNKILFWNVGTGEPMLEVDVPD-MIYCMSFNFNGSRL 252
Query: 288 ASAGSDSKIKIWDLRQGRQIYTLYSND-KDITTVQFNQSGDYFATGGSQ 335
D K++I D G + +D + + G F TG S+
Sbjct: 251 VCTCKDKKLRIIDSHSGAVLKEGKCHDGAKPAQACYLKDGKVFTTGFSR 105
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 86/233 (36%), Gaps = 10/233 (4%)
Frame = -2
Query: 78 PQQRPFKFVGHKGAVYCVKYSPDGE-TIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRS 136
P P GHKGAV +++ P + IAS D +++WQ
Sbjct: 605 PVDNPL-VAGHKGAVLDIQWCPHNDNVIASASDDCTVKVWQ------------------- 486
Query: 137 MSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMR--LVASGSDD 194
D G L D + GH+ V P + LV++G+D+
Sbjct: 485 ---IPDSGLVT-----------NLTDP--VVDLVGHQKRCCLIVWHPSAQNVLVSAGADN 354
Query: 195 KTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCLISSSFDHKI 254
K ++ W NV + D D + + F+ +G+ L+ + D K+
Sbjct: 353 K-ILFW----------------NVGTGEPMLEVDVPDMIYCMSFNFNGSRLVCTCKDKKL 225
Query: 255 KITDIRSNKLIQHYNAHD----AQVNSI---SIHPTGYFLASAGSDSKIKIWD 300
+I D S +++ HD AQ + + TG+ S S+ + IWD
Sbjct: 224 RIIDSHSGAVLKEGKCHDGAKPAQACYLKDGKVFTTGF---SRMSERQYAIWD 75
>21960
Length = 756
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Frame = +1
Query: 251 DHKIKITDIRSN---KLIQHYNAHDAQVN--SISIHPTGYFLASAGSDSKIKIWDLRQ-G 304
D +K D+RSN +++ Y + +V SI+ HP +GSD K++++D R+
Sbjct: 4 DSTVKHFDLRSNCCTTMLRCYTKENRRVRLFSIAHHPFASEFCISGSDDKLRVYDKRKLD 183
Query: 305 RQIYTLYSNDKD---ITTVQFNQSG 326
+ ++ + D IT +N SG
Sbjct: 184 KTVHEMSPKDTKVSQITCAVYNHSG 258
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 237 LFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQV-NSISIHPTGYFLASAGSDSK 295
F P +IS S D I D + + DA V N + HPT LA++G D
Sbjct: 385 FFGPHSEHIISGSDDGNIFYWDKNTEAVTNFMKGDDAGVVNCLEQHPTMPVLATSGLDHN 564
Query: 296 IKIW 299
+KIW
Sbjct: 565 VKIW 576
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +1
Query: 177 RSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQV 236
R P + SGSDD + WD N + V+ + DD ++ +
Sbjct: 376 RVNFFGPHSEHIISGSDDGNIFYWDKN-TEAVTNFMKGDDAGVVNCLEQ----------- 519
Query: 237 LFHPDGTCLISSSFDHKIKI 256
HP L +S DH +KI
Sbjct: 520 --HPTMPVLATSGLDHNVKI 573
>27270
Length = 1078
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 20/149 (13%)
Frame = +2
Query: 171 GHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHM 230
GH V D R + S S D V+ W++N ++ K+ K + + H
Sbjct: 266 GHSKAVTDMCWRADGRTLYSSSLDGHVIGWNVNTLHMIEKW-------KATSGRHHGVHC 424
Query: 231 DTVSQVLFHPDGTCLISSS----FDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPT--- 283
CL SSS DH IK+ D+ + ++Q ++ H +V I + P
Sbjct: 425 ------------VCLCSSSRLLTADHTIKMWDLTTKNVLQEFSGHSTEV--IKLLPVLKP 562
Query: 284 -------------GYFLASAGSDSKIKIW 299
Y ++A +D I +W
Sbjct: 563 SSEQNDIGDSNLACYVFSAAAADRTINVW 649
>01462
Length = 995
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 158 WRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDL 202
W ++ +++ + GHK+++ V+ D + S S+D TV +WD+
Sbjct: 278 WDIEAGQYLNAMEGHKDYIHKVVMKNDAQECVSASEDGTVRMWDI 412
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 245 LISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQG 304
L + + D KI + DI + + + H ++ + + SA D +++WD+R
Sbjct: 242 LYAGAGDRKIHVWDIEAGQYLNAMEGHKDYIHKVVMKNDAQECVSASEDGTVRMWDIRSS 421
Query: 305 RQ 306
+
Sbjct: 422 TE 427
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 56 DPKM--RQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQI 113
D KM R++ + + D ++VW+ + Q GHK ++ V D + S +D +
Sbjct: 218 DEKMGTRRLYAGAGDRKIHVWDIEAGQYLNAMEGHKDYIHKVVMKNDAQECVSASEDGTV 397
Query: 114 RLW 116
R+W
Sbjct: 398 RMW 406
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Frame = +2
Query: 186 RLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCL 245
R + +G+ D+ + +WD+ +Y +N+ H D + +V+ D
Sbjct: 236 RRLYAGAGDRKIHVWDIE----AGQY-----------LNAMEGHKDYIHKVVMKNDAQEC 370
Query: 246 ISSSFDHKIKITDIRSNKLIQHY-----------NAHDAQVNSISIHPTGYFLASAGSDS 294
+S+S D +++ DIRS+ H + +++ P +L G
Sbjct: 371 VSASEDGTVRMWDIRSSTETVHCLEPSKNELCSRPLLGKWLRCLALDPEEGWLVCGGG-P 547
Query: 295 KIKIWDLR 302
K+ W LR
Sbjct: 548 KLSAWHLR 571
>10264
Length = 416
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -1
Query: 41 RSFRGHEDIITCADFDPKM-RQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSP 99
R GH +T + P ++ S D+ +VW+ + +F GH G + ++S
Sbjct: 263 RELSGHSQRVTDMSWSPHHDARLVSVGYDAEAFVWDVQKGTALAQFKGHMGRLLTCQFSG 84
Query: 100 -DGETIASCGQDRQIRLWQNTVQS 122
D + + + G D + +W+ + Q+
Sbjct: 83 LDPDLVMTGGSDASVHVWRVSQQA 12
>04395
Length = 1145
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Frame = +3
Query: 232 TVSQVLFHPDGTCLISSSFDHKIKITDIR--SNKLIQHYNAHDAQVNSISI--HPTGYFL 287
T++ + F L +SF ++K+ D+R S++ Q ++A D + + + HP +
Sbjct: 345 TINALTFLKQSQVLTVNSFG-QLKLFDVRQNSDEPAQIFSATDDHWSLLCVDKHPGQLHI 521
Query: 288 ASAGS-DSKIKIWDLRQGR-QIYTLYSNDKDITTVQFNQ 324
+ GS D + +WDLR R + TL ++ + V+F+Q
Sbjct: 522 VATGSQDGTLTVWDLRHHRFPMTTLDAHHSSMWEVRFHQ 638
>12140
Length = 727
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 20/101 (19%)
Frame = +2
Query: 262 NKLIQHYNAHDAQVNSISI--HPTGYFLASAGSDSKIKI--------WDLRQGRQIYTLY 311
+KL ++ N HD+ VNS+ H G LA SD + I WD ++ +T+
Sbjct: 11 DKLFEYSN-HDSSVNSVCFAPHELGLILACGSSDGSLSIISTTGDGNWDSKKINNAHTIG 187
Query: 312 SNDKDIT-----TVQFNQSG-----DYFATGGSQNLCMVWK 342
N F+QS F +GG NL +W+
Sbjct: 188 CNAVSWAPSTAPNALFDQSARQQPVKRFVSGGCDNLVKIWR 310
>36111
Length = 687
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 275 VNSISIHPTGYFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFATGGS 334
VN+++ H A+ GSD + IWD +++ + I ++ F+ G+ A S
Sbjct: 239 VNAVAFHNVYNTFATGGSDGYVNIWDGFHKKRLCXFHRYPTSIASLAFSHDGNVLAIASS 418
>17298
Length = 476
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -1
Query: 60 RQVASCSKDSIVYVWNFKPQQRPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLWQNT 119
RQV D +V N Q K+ H G V CVK++ + I S D +R W
Sbjct: 299 RQVCWHICDGVVVGNNVASGQALRKYRDHAGTVNCVKFNEESTVILSGSLDNTVRAWDTR 120
Query: 120 VQSKCSI 126
+S I
Sbjct: 119 SRSHTPI 99
>20662
Length = 1220
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Frame = +2
Query: 158 WRLQDKKFMCSF----AGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYST 213
W LQD+ M S H + S I+ D S S D + +W
Sbjct: 329 WELQDEDKMFSMLSSACEHDDMTASVSINSDXSHYLSASYDHGIKVW------------- 469
Query: 214 LDDNVKISQINSYSDHMDTVSQVLFHPDGTCL-ISSSFDHKIKITDIRSNK 263
N ++ + +Y H D V V HP L +S S D KI + D+R +K
Sbjct: 470 ---NTDLTSLYTYRAHSDIVWDVQCHPTEPALFLSCSQDGKIVLWDVRESK 613
>29912
Length = 510
Score = 32.0 bits (71), Expect = 0.71, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 49/111 (44%)
Frame = +3
Query: 90 GAVYCVKYSPDGETIASCGQDRQIRLWQNTVQSKCSIIKAHCGAIRSMSFSADGGYXXXX 149
GAV +K +G +A ++++W T Q K + H + S+S+++
Sbjct: 21 GAVSWIK---EGNYLALGTSTGEVQVWDVTQQKKLRTMAGHAARVGSLSWNSFIVSSGSR 191
Query: 150 XXXXXXXXWRLQDKKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLW 200
R+ D + + +GH V SPD + +ASG++D + +W
Sbjct: 192 SGNIHHHDVRVADHH-VGTLSGHSQEVCGLRWSPDGKYLASGANDNLLCVW 341
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 51/131 (38%)
Frame = +3
Query: 169 FAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSD 228
+ G +W++ G +A G+ V +WD+ QK + + V NS+
Sbjct: 15 YIGAVSWIKEG------NYLALGTSTGEVQVWDVTQQKKLRTMAGHAARVGSLSWNSFIV 176
Query: 229 HMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNSISIHPTGYFLA 288
+ S + H H +++ D L + H +V + P G +LA
Sbjct: 177 SSGSRSGNIHH------------HDVRVADHHVGTL----SGHSQEVCGLRWSPDGKYLA 308
Query: 289 SAGSDSKIKIW 299
S +D+ + +W
Sbjct: 309 SGANDNLLCVW 341
>34005
Length = 456
Score = 31.6 bits (70), Expect = 0.90, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +1
Query: 274 QVNSISIHPTGYFLASAGSDSKIKIWDLRQGRQI---YTLYSNDKDITTVQF-NQSGDYF 329
+V +S P FLAS +D+ + IWD G + +TL S+ + V +
Sbjct: 118 EVCGLSWSPDATFLASGSNDNSVNIWDSTLGMDVPPLHTLTSHQAAVKAVAWCPWQTRML 297
Query: 330 ATGGSQNLCMV--WKTN 344
ATGG N + W TN
Sbjct: 298 ATGGGTNDRHIRFWNTN 348
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 182 SPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPD 241
SPD +ASGS+D +V +WD STL + + +++ + H V V + P
Sbjct: 139 SPDATFLASGSNDNSVNIWD----------STL--GMDVPPLHTLTSHQAAVKAVAWCPW 282
Query: 242 GTCLISS 248
T ++++
Sbjct: 283 QTRMLAT 303
>04088
Length = 511
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Frame = +3
Query: 133 AIRSMSFSADGGYXXXXXXXXXXXXWRLQDK---KFMCSFAGHKN--WVRSGVISPDMRL 187
A+ S++F+ DG RL DK + + F GHK+ + ++ + L
Sbjct: 36 AVTSVTFTRDG---QCSLVSSQDNTVRLMDKDTGEMLNEFTGHKHSQYKIDSCLNNEDTL 206
Query: 188 VASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDT--VSQVLFHPDGTCL 245
V SGS+D V WDL K+V DH T V + FH CL
Sbjct: 207 VVSGSEDGKVYFWDLVEAKLVDTL----------------DHKTTRPVHSLSFHHAELCL 338
Query: 246 ISSSFD 251
+++ D
Sbjct: 339 MTACAD 356
>10162
Length = 1629
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 280 IHPTGYFLASAGSDSKIKIWDLRQGRQIYT 309
I P G ++ SD +K+WDL+ G ++T
Sbjct: 183 ILPNGKYVCVGYSDGVVKLWDLKTGTAVHT 272
>30679
Length = 1025
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +1
Query: 223 INSYSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQ-------V 275
+N H DT+ + ++ G+ ++S D K++ D R+ + H
Sbjct: 67 VNIVDCHTDTIFSMSWNRXGSMFATTSKDKKLRTIDPRTTTVAAESQCHKGPKASKVVFA 246
Query: 276 NSISIHPTGYFLASAGSDSKIKIWDLRQGR 305
+++ + TG+ A GS ++ +WDLR+ +
Sbjct: 247 DNVKLTTTGF--AQMGS-RELSLWDLRKSK 327
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 287 LASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFNQSGDYFAT 331
L SAG D K +W++ Q + + + I ++ +N+ G FAT
Sbjct: 7 LLSAGFDYKCVVWNVEQAEPVNIVDCHTDTIFSMSWNRXGSMFAT 141
>18320
Length = 450
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Frame = -2
Query: 221 SQINSYSDHM-------DTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDA 273
S N + DH V V +G L + S D + + D+ + + D
Sbjct: 332 SDPNQHMDHFIYNDILFAAVDVVHLMQNGQLLAAGSRDRYLTLLDLTKYDPARPKSKKDM 153
Query: 274 QVNSISIHPTGYF---------LASAGSDSKIKIWDLRQGRQIYTLY 311
Q++ I +G+ L + D+KIK+WDL Q + T Y
Sbjct: 152 QLHCIDKAHSGWIWCMASLNQHLYTGSWDTKIKVWDLGQDMNVVTSY 12
>27475
Length = 369
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +2
Query: 167 CSFAGHKNWVRSGVISPDMR-LVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINS 225
C+F H WV SP L SGS D + LWD S +TL D +N
Sbjct: 50 CAFTSHTGWVTGVDWSPTREHLFLSGSYDNVLKLWDTR-----SPKATLYD------MNW 196
Query: 226 YSDHMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKL 264
+ D + V + P+ L+S D+K+ + S KL
Sbjct: 197 HEDRILAVDWSI--PE--LLLSGGVDNKLHVFSYSSAKL 301
>30176
Length = 365
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 88 HKGAVYCVKYSPDGETIASCGQDRQIRLWQ 117
H V+ + + G +ASC D+ I++WQ
Sbjct: 17 HTSTVWNLTFDKTGTRLASCSDDKTIKIWQ 106
>37142
Length = 327
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +2
Query: 255 KITDIRSNKLIQHYNAHDAQVNSISIHP-TGYFLASAGSDSKIKIWDLRQGRQIYTLYSN 313
K+ D ++ + H V ++ +P LAS S+S+I IWDL + T
Sbjct: 53 KMIDGDADCSVLQLTKHTGAVKALDFNPFQTNLLASGASESEIYIWDLNKPDNPMTPGQK 232
Query: 314 D---KDITTVQFNQSGDYFATGGSQNLCMVW 341
++++ V +N+ + C+VW
Sbjct: 233 SQPPEEVSCVAWNRQVQHILASNFAARCVVW 325
>14972
Length = 508
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = -1
Query: 228 DHMDTVSQVLFHPDGTCLISSSFD---HKIKITDIRSNKLI--QHY 268
DH T SQ L+ P G CL SSF + K++ SN L+ QH+
Sbjct: 319 DHRST*SQSLYPPLGCCLFRSSFRSEAYFXKMSAYDSNSLVHQQHF 182
>20271
Length = 567
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Frame = -1
Query: 38 ALSRSFRGHEDIITCADFDPKMRQV------ASCSKDSIVYVWNFKPQQRPFKFVGHKGA 91
++ ++ GH+ IT D Q+ + S D V +WN K Q+ F +
Sbjct: 312 GINEAYEGHQGPITAIDTHHAAGQIDFSPFFLTASFDWTVKLWNIKEQKYVCSFEDNSDY 133
Query: 92 VYCVKYSPDGETIASC 107
V V++SP + SC
Sbjct: 132 VSDVQWSPTNPALFSC 85
>33180
Length = 460
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 287 LASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQF-NQSGDYFATGGSQNLCMVW 341
+ +D + ++D ++ + ++D D+ V F + S +GG LC VW
Sbjct: 408 IVGGANDGCLYVYDRESNQRTLKIDAHDDDVNAVAFADDSSQILYSGGDDGLCKVW 241
>01805
Length = 2124
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -1
Query: 285 YFLASAGSDSKIKIWDLRQGRQIYTLYSNDKDITTVQFN-QSGDYFATGGSQNLCMVWKT 343
+ LASA +D+ + +WDL +G+ + +++ ++ Q TG N V
Sbjct: 534 HVLASASADTTVALWDLSEGKMAMNFTQHSREVQCCNWHPQEEQTLLTGSFDNTVKV--- 364
Query: 344 NFDQNIQNIEQVQRSTVRQNDVE 366
+ ++ E +S + +VE
Sbjct: 363 ---VDCRSAETCHKSWTVEGEVE 304
>31864
Length = 545
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 4/136 (2%)
Frame = +2
Query: 130 HCGAIRSMSFSADGGYXXXXXXXXXXXXWRLQDKKFMCSFAGHKNW--VRSGVISP--DM 185
H G I M S DG +L D + + +K V S ISP D
Sbjct: 47 HTGGINDMQLSKDGTMFVTASKDTTA---KLFDSESLMCLKTYKTERPVNSAAISPILDH 217
Query: 186 RLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSYSDHMDTVSQVLFHPDGTCL 245
++ G D V K S++ L + +++ H ++ + FHPDG
Sbjct: 218 VVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLKG---HFGPINSLAFHPDGKSY 388
Query: 246 ISSSFDHKIKITDIRS 261
S D +++ S
Sbjct: 389 ASGGEDGFVRVKSFDS 436
Score = 28.1 bits (61), Expect = 10.0, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 5/141 (3%)
Frame = +2
Query: 163 KKFMCSFAGHKNWVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQ 222
+K + S H + +S D + + S D T L+D + Y T + V +
Sbjct: 20 QKVVDSGVDHTGGINDMQLSKDGTMFVTASKDTTAKLFDSESLMCLKTYKT-ERPVNSAA 196
Query: 223 INSYSDHM-----DTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAHDAQVNS 277
I+ DH+ +V S F H I + K H +NS
Sbjct: 197 ISPILDHVVLGGGQDAMEVTTTSTKAGKFDSRFFHLIYEEEFARLK------GHFGPINS 358
Query: 278 ISIHPTGYFLASAGSDSKIKI 298
++ HP G AS G D +++
Sbjct: 359 LAFHPDGKSYASGGEDGFVRV 421
>12841
Length = 1364
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +1
Query: 22 GNTSSKITEQQTTHDPALSRSFRGHEDIITCADFDPKMRQV-ASCSKDSIVYVWNFKPQQ 80
G I + +++ ++ GH + + P + + SCS D + +W+
Sbjct: 973 GTEEGYIHKCSCSYNEQYLETYSGHTAPVYHIRWSPFVSDIFLSCSADWSIRLWHQDRTT 1152
Query: 81 RPFKFVGHKGAVYCVKYSPDGETIASCGQDRQIRLW---QNTVQSKCSIIKAHCGAIRSM 137
F V+ V +SP T+ +C + + +W Q+T+ + +I + S+
Sbjct: 1153 PILTFHSSTKTVHDVCWSPRSSTVFACVHEGAVEVWDLAQSTLDAVITITPTSGAKLTSV 1332
Query: 138 SF 139
+F
Sbjct: 1333 TF 1338
>02948
Length = 1207
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -2
Query: 229 HMDTVSQVLFHPDGTCLISSSFDHKIKITDIRSNKLIQHYNAH-DAQVNSISIHPTGYFL 287
H V+ + F P+G+CL+S H+ + + N + + A +++I + P G F
Sbjct: 627 HSLPVTCLAFTPEGSCLLSGG--HECTLVRWQMNSEHKEFLPRLGAPLHNIVVSPDGVFF 454
Query: 288 ASAGSDSKIKI 298
+ SD+ +++
Sbjct: 453 VTGHSDNVLQV 421
>30297
Length = 822
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -1
Query: 30 EQQTTHDPALSRSFRGHEDIITCADFDPKMRQVASCSKDSIVYVWN 75
E T P + +S+RGH + ++C D + + + + + D V +W
Sbjct: 279 ETPETDSPDVIQSWRGHVESVSCLDLVEQNKVLLTSAADCTVRMWT 142
>05642
Length = 445
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -1
Query: 169 FAGHKN--WVRSGVISPDMRLVASGSDDKTVMLWDLNFQKIVSKYSTLDDNVKISQINSY 226
F GHK+ + ++ + LV SGS+D V WDL K+V
Sbjct: 427 FTGHKHSQYKIDSCLNNEDTLVVSGSEDGKVYFWDLVEAKLVDTL--------------- 293
Query: 227 SDHMDT--VSQVLFHPDGTCLISSSFD 251
DH T V + FH CL+++ D
Sbjct: 292 -DHKTTRPVHSLSFHHAELCLMTACAD 215
>03044
Length = 1952
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Frame = -2
Query: 251 DHKIKITDIRSNKL--IQHYNAHDAQVNSISIHPTGYFLASAGSDSKIKIWDLRQGR--- 305
DH++KI +K H +V I P + + G+D +W + G+
Sbjct: 1723 DHEVKIYKKNGSKWQETDTLGEHGQRVTGIDWAPKSNRIVTCGADRNAYVWTYQDGKWQP 1544
Query: 306 QIYTLYSNDKDITTVQFNQSGDYFATGGSQNLCMV 340
+ L N + T V+++ + FA G S L V
Sbjct: 1543 HLVILRIN-RAATCVKWSPEENKFAVGSSARLISV 1442
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00499570__3716.m00032hypothetical_protein
(249 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11726 90 8e-19
04849 78 3e-15
02350 30 1.1
10680 30 1.2
15404 29 2.1
28497 29 2.2
25026 28 2.8
09210 28 4.1
>11726
Length = 458
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 66/90 (73%)
Frame = +1
Query: 160 TTLKKIQKLVTSSDMIGEALVPYYRQILPVMNMFKNKRLNIGDHIDYSQRKNENLSDLIQ 219
+ L+ +Q +V +G+ALVP+YRQ+L V N++KN +N+G+ +D + K + D+I+
Sbjct: 1 SALQVLQLMVRLGPCVGQALVPFYRQLLAVCNLYKNVNVNLGEGVDPDRSKR--IGDVIE 174
Query: 220 ETLEILEKYGGEDAYINIKYMIPTYESCMF 249
+TL++LE GG +A+INIKYM+PTYES +F
Sbjct: 175 DTLKLLEFCGGPNAFINIKYMVPTYESSVF 264
>04849
Length = 1012
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 2/184 (1%)
Frame = +2
Query: 65 FKKYYDRGDLPIAVNFHGAHRKISWKLEPELLDYHLYLPIFFEGLRETEEPYKFLADQGC 124
F Y G +P + K++W PE L + LP EGLRET PY ++ G
Sbjct: 311 FASLYSNGGVPCRLIHGSVKHKLAWDTPPEHLPFDPVLPTLAEGLRETVHPYTHVSHMGF 490
Query: 125 EELLARGGAKIFA--VLPQLIIPIKKALSTKSHPIMCTTLKKIQKLVTSSDMIGEALVPY 182
+ELL GA + A +L +++ P++ AL ++ + + + L+ S +G AL P+
Sbjct: 491 KELLESEGAGVKAAPLLNKVVPPLRAALIHSNNEVFE---RGLDGLIYLSTAVGPALNPH 661
Query: 183 YRQILPVMNMFKNKRLNIGDHIDYSQRKNENLSDLIQETLEILEKYGGEDAYINIKYMIP 242
+ +L M +KR+ +D R D + +TL++LE+ GG++ IK +P
Sbjct: 662 LKNLL----MALSKRM-----MDKKYR------DKVTDTLQMLEQNGGKEVLPVIKAKVP 796
Query: 243 TYES 246
TY S
Sbjct: 797 TYSS 808
>02350
Length = 1622
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 76 IAVNFHGAHRKISWKLEPELLDYHLYLPIFFE--GLRETEEPYKFLAD 121
+ V H IS +L +YHL LPI+F+ GL P+ FL+
Sbjct: 658 VCVGLHACKSIIS-----QLHNYHLRLPIYFQTLGLAHIMCPFAFLSS 530
>10680
Length = 1093
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 63 NLFKKYYDRGDLPIAVNFHGAHRKISWKLEPEL-LDYHLYLPIFFEG 108
N F+++YDR D +++ F G H + S K +P + D L L F G
Sbjct: 938 NPFQEFYDRVDGDLSMGFGGLHGRGSKKQDPPIERDLFLALEEVFHG 798
>15404
Length = 1315
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 96 LDYHLYLPIFFEGLRETEEPYKFL 119
L YH+YLPI+F+ L P+ F+
Sbjct: 512 LHYHIYLPIYFQTLGFAHFPFYFV 583
>28497
Length = 734
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 65 FKKYYDRGDLPIAVNFHGAHRKISWKLEPELLDYHLYL 102
F ++YD+ P+ + FH A K + PE LD LY
Sbjct: 156 FDRHYDQNRAPLGLYFHAAWLKNN----PEFLDAFLYW 257
>25026
Length = 1656
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 182 YYRQILPVMNMFKNKRLNIGDHID--YSQRKNENLSDLIQETLEILEKYG 229
Y QI P ++F +IG HI +++N+NLSDL + T K+G
Sbjct: 436 YIHQISPTSSVFGQSVDDIGKHIH*FLFKKQNKNLSDLEKYTNH*TSKFG 287
>09210
Length = 1339
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 96 LDYHLYLPIFFEGLRETEEPYK 117
L +HL P+FFEG E+ PY+
Sbjct: 749 LPFHLQFPVFFEGGGESLHPYQ 684
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00295080__3692.m00081rieske_iron-sulfur_protein,
_Ubiquinol-cytochrome_c_reductase_iron-sulfur_subunit
(269 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10799 89 2e-18
28566 28 2.9
05960 28 3.3
15226 28 4.2
01772 28 4.7
37338 28 5.4
39465 27 6.7
06604 27 7.0
02938 27 9.2
>10799
Length = 953
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%)
Frame = +3
Query: 131 EVDIGALPPGEVMQMVWNGTPIFIRRLTSNEVKEENELPSNTLLDKDKEVILSDAGNTKV 190
E+ + +P G+ M W G P+F+R ++ E+ + N L + +E N +
Sbjct: 123 EIKLNEIPEGKNMTFKWRGKPLFVRHRSAEEIAAXEAVDVNQL--RHQETDAERVQNPQW 296
Query: 191 IVVSAVCTHLGCIPIPYLGAYKGYVCICHGSVYDKFARVRQGPALLNLPAINNSIHDEGT 250
+V+ +CTHLGC+P+ G Y GY C CHGS YD R+R+GPA LNL S ++G
Sbjct: 297 LVLLGICTHLGCVPLANAGDYGGYYCPCHGSHYDASGRIRKGPAPLNLEVPEYSFPEDGL 476
Query: 251 LV 252
LV
Sbjct: 477 LV 482
>28566
Length = 604
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 211 YKGYVCICHGSVYDKFARVRQGPALLNLPAINNSIHDEGTL---VCMEQLKFP 260
+ Y C H S+Y+KF Q L++ +I N + D G+ +C LK P
Sbjct: 601 FATYFCYYHNSLYNKFTACXQR--LISW*SITNVLTDTGSQTIKICWSLLKCP 449
>05960
Length = 1249
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Frame = +3
Query: 46 DKPTFFVTSSRPG---------NFGDHIDFKVNIDNWFDENRVH---NEHET-DIRRTQI 92
DK F++ +RP + D F ++ NWF RVH N +T RRTQ
Sbjct: 363 DKEYFYIFVTRPAI*FNMV*MRAYTDIYRFTRSVTNWFKSPRVHLTVNTLQT*AFRRTQT 542
Query: 93 YTLNAIY 99
+ L Y
Sbjct: 543 HILGHAY 563
>15226
Length = 1712
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 177 DKEVILSDAGNTKVIVVSAVCTHLGCIPIPYLGAYKGYVCI 217
DK V + A ++ S CT LGC P ++ G+VCI
Sbjct: 527 DKLVT*ASARGMS*VLGSLTCTLLGCAPFSFM----GFVCI 417
>01772
Length = 485
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -1
Query: 19 VQAYNFGVLSEYNQRLSKKLHK 40
+QA+NF L++++Q+ SK LH+
Sbjct: 308 LQAWNFSQLADFSQKQSKTLHE 243
>37338
Length = 871
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 51 FVTSSRPGNFGDHIDFKVNIDNWFDENRVHNEHET--DIRRT-QIYTLNAIY 99
+ TS+ F + + WF N HNE++ RRT Q+Y LN I+
Sbjct: 110 YATSALQNKFSSELQCQ*MT*KWFVRNECHNENDV*K*CRRTIQMYLLNKIF 265
>39465
Length = 791
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 192 VVSAVCTHLGCIPIPYLGAYKGYVCI 217
+VS CT LGC P +L G+VCI
Sbjct: 400 LVSLTCTQLGCAPFSFL----GFVCI 465
>06604
Length = 1748
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 192 VVSAVCTHLGCIPIPYLGAYKGYVCI 217
V S+ CT LGC P+ +L G+VCI
Sbjct: 489 VRSSTCTLLGCAPLSFL----GFVCI 424
>02938
Length = 1718
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 201 GCIPIPYLGAYKGYVCICHGSVYDKFAR 228
GC P G+Y+G C+C G + + AR
Sbjct: 287 GCRL*PLPGSYRGRACVCVGRQWGRSAR 370
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00346410__3695.m00114Nucleoside_diphosphate_kinase_family_pr
otein
(151 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
32935 87 2e-18
02656 81 2e-16
02733 67 3e-12
31902 32 0.13
14087 28 1.5
04192 27 4.4
20942 26 5.1
03854 26 5.6
>32935
Length = 1188
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Frame = +2
Query: 4 ERTFIMIKPDGVQRGLVGNIISRFESRGYQLIAMKFQLATKQILEKHYEEHISKPFFPSL 63
ERT +IKPD V++ +G ++ + +G+ + ++ + + Y+EH SKPF +L
Sbjct: 278 ERTLGLIKPDAVEK--LGQVLDKILQKGFLISRLRMCKLDRNTALEFYQEHRSKPFLNAL 451
Query: 64 LKFMLSGPVVPMVWQGKDVVKQGRAMLGQTNPLTS---APGTIRGDFGIVMQKNLVHGSD 120
L ++ SGPVV G++ V R +G T+P + AP +IR +G + N VHGSD
Sbjct: 452 LDYVTSGPVVAFEIVGENAVGAWREAIGPTDPSLARKEAPTSIRAQYGTDVTCNAVHGSD 631
Query: 121 SVESAKREIAIWFQDS 136
S SA RE+ +F S
Sbjct: 632 SPGSAAREVEFFFPSS 679
>02656
Length = 2642
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Frame = +3
Query: 4 ERTFIMIKPDGVQRGLVGNIISRFESRGYQLIAMKFQLATKQILEKHYEEHISKPFFPSL 63
E+T MIKPDG G II + G+++ A K T+ I E Y++ K ++ SL
Sbjct: 1074 EQTVAMIKPDGY--GTKDAIIEKIHQAGFRIAARKETTITRDIAESFYDDQKDKDYYESL 1247
Query: 64 LKFMLSGPVVPMVWQGKDVVKQGRAMLGQTNPLTSA---PGTIRGDFGIVMQKNLVHGSD 120
++ M SGP + MV + V R +G T+P + P ++R FG + +N VHG+
Sbjct: 1248 VEHMTSGPTMFMVLSREGAVDGWREEIGPTDPTKAKEQNPNSLRAQFGTDVLQNAVHGAS 1427
Query: 121 SVESAKREIAIWFQD 135
S E AK++I F D
Sbjct: 1428 SSEEAKKKIKAVFGD 1472
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Frame = +3
Query: 4 ERTFIMIKPDGVQRGLVGNIISRFESRGYQLIAMKFQLATKQILEKHYEEHISKPFFPSL 63
+RT +I+PD I+ + + G+Q+ K TK+ E+ Y+EH +P++ L
Sbjct: 669 QRTLALIRPDAFANNKDA-ILEKIKEAGFQIALHKEVSLTKEQAEEFYKEHAGQPYYDEL 845
Query: 64 LKFMLSGPVVPMVWQGKDVVKQGRAMLGQTN---PLTSAPGTIRGDFGIVMQK-NLVHGS 119
M SGP++ + +D V+ R MLG T+ T+AP +R F + N +HGS
Sbjct: 846 TDRMSSGPLLALGLAREDAVENWREMLGPTDVEEAKTAAPDCLRAQFAVDSTAINQLHGS 1025
Query: 120 DSVESAKREIAIWF 133
DS +SAK+E+ +F
Sbjct: 1026DSTQSAKKELEFFF 1067
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Frame = +3
Query: 6 TFIMIKPDGVQRGLVGNIISRFESRGYQLIAMKFQLATKQILEKHYEEHISKPFFPSLLK 65
T +IKP+ V G V I++ ++RG + A + + T+ + Y + +F L+
Sbjct: 219 TVAIIKPNVVANGKVDEILAEMKARGINVKAQEERQLTEDEAREFYSHLQGEEYFEDLVA 398
Query: 66 FMLSGPV-VPMVWQGKD---VVKQGRAMLGQ---TNPLTSAPGTIRGDFGIVMQKNLVHG 118
FM SGP V ++ +G++ VVK R MLG + AP ++R +G N VHG
Sbjct: 399 FMASGPSHVLVLTEGQEDDSVVKDWRDMLGPPTVEDAKEQAPESLRARYGQGGLMNAVHG 578
Query: 119 SDSVESAKREIAIWF 133
SDS E+A RE+A +F
Sbjct: 579 SDSKETAARELAFFF 623
>02733
Length = 853
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Frame = -1
Query: 31 GYQLIAMKFQLATKQILEKHYEEHISKPFFPSLLKFMLSGPVVPMVWQGKDVVKQGRAML 90
G+++ A K T+ I E Y++ K ++ SL++ M SGP + MV + V R +
Sbjct: 730 GFRIAARKETTITRDIAESFYDDQKDKDYYESLVEHMTSGPTMFMVLSREGAVDGWREEI 551
Query: 91 GQTNPLTSA---PGTIRGDFGIVMQKNLVHGSDSVESAKREIAIWFQD 135
G T+P + P ++R FG + +N VHG+ S E AK++I F D
Sbjct: 550 GPTDPTKAKEQNPNSLRAQFGTDVLQNAVHGASSSEEAKKKIKAVFGD 407
>31902
Length = 546
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 87 RAMLGQTNPLTS---APGTIRGDFGIVMQKNLVHGSDS 121
R +G T+P + AP +IR +G + N VHGSDS
Sbjct: 391 REAIGPTDPSLARKEAPTSIRAQYGTDVTCNAVHGSDS 504
>14087
Length = 2025
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 59 FFPSLLKFMLSGPVVPMVWQGKDVVKQGRAMLGQTNPLTS 98
++ SL++ M SGP + MV + V R +G T+P S
Sbjct: 2 YYESLVEHMTSGPTMFMVLSREGAVDGWREEIGPTDPTKS 121
>04192
Length = 1262
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = -1
Query: 32 YQLIAMKFQLATKQILEKHYEEHISKPFFP------SLLKFMLS 69
+ L + L T+ + K + EH SKP FP LL F+LS
Sbjct: 332 FVLCTLVLMLKTETVDLKLFREHASKPHFPFLNYQQKLLMFILS 201
>20942
Length = 359
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 35 IAMKFQLATKQILEKHYEEHISKPFFPS 62
+++ FQL +L+ HY++H+S F S
Sbjct: 319 LSLCFQLRDYLLLQGHYQKHVSVKIFVS 236
>03854
Length = 458
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 73 VPMVWQGKDVVKQGRAMLGQTN 94
VP++W G + + GR + TN
Sbjct: 170 VPLIWSGPTITRNGRQLSSPTN 235
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00241700__3706.m00136succinate_dehydrogenase_and_fumarate_re
ductase_iron-sulfur_protein
(312 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
18125 70 8e-18
07001 32 0.44
16686 30 0.91
03275 30 1.4
07203 28 4.3
04663 28 4.6
04348 28 5.0
>18125
Length = 474
Score = 70.1 bits (170), Expect(2) = 8e-18, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = -1
Query: 236 LGPAILQQAYRWIVDSRDEYTQERIERIAEDVRLDDCQQIGMCSFTCPKGLNPQLSLKNL 295
LGPA+L QAYRWI+DSRDE + ER+ ++ + + C I C+ TCPKGLNP ++ +
Sbjct: 411 LGPAVLMQAYRWIIDSRDENSVERLSKLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEI 232
Query: 296 MDMVKDFRQK 305
++ K
Sbjct: 231 KKLLSGLASK 202
Score = 37.4 bits (85), Expect(2) = 8e-18, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -2
Query: 216 VLCAACSTSCPSYWWHPDRY 235
+LCA CST+CPSYWW+ ++Y
Sbjct: 470 ILCACCSTACPSYWWNAEQY 411
>07001
Length = 442
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Frame = +1
Query: 205 QRALLDGLYECVLCAACSTSCPSYWWHPDRYLGPAILQQAYRWIVDSRD-EYTQERIERI 263
+ +L+ G+ C+ C + S CP A+L Q+ +I+ + E +++
Sbjct: 43 RESLVFGVSTCISCVSLS*LCPLMLC--------ALLNQSVLFIIVCLTCKLVFELSQQL 198
Query: 264 AEDVRLDDCQQIGMCS-----FTCPKGLNPQLSLKNLMDM 298
VRL D +GMCS F C L+P ++ +D+
Sbjct: 199 TASVRLLDIYTVGMCSILFLGFVCIFVLSPDMAQSGRLDL 318
>16686
Length = 689
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +1
Query: 230 WHPDRYLGPAILQQ-AYRWIVDSRDEYTQERIERIAEDVRLDDCQQIGMCSFT-CPKGLN 287
WH R+L PAI + A W +S Y Q R E + + T C + L
Sbjct: 130 WHEPRFLSPAISNRLAGAWXAESLQSYQQLSYGRCCEA*NVPSPGTLNTAPHTHCAQTLT 309
Query: 288 PQLSLKNLMDMVKDFRQ 304
P L + D++ F Q
Sbjct: 310 PLLHCCSWSDILVCFSQ 360
>03275
Length = 3821
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 17 SRFGSGFDRIAESNDATSICLESISGTIKGL--QKANYVVEHNPNLTSEEKKHLKQFLVY 74
S FG GF+ + + C I G + Q A+ V++ N L + +HLKQ +VY
Sbjct: 3412 SMFGCGFEPLVD------FCNAVIGGALASFVTQPAD-VIKTNMQLYPRQHRHLKQVIVY 3570
Query: 75 RYN 77
Y
Sbjct: 3571 VYQ 3579
>07203
Length = 1642
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 135 DGLHTLACISGFNRDLSKPTIITP-LGHMFILKDLVVDMTNFYAQY 179
+ +HTL C+ + L +P ++ P L H F+ + N A +
Sbjct: 512 EFVHTLTCLCSLHISLDQPVLLAPMLCHAFVYNSCICTKCNLNATF 375
>04663
Length = 1478
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 49 KANYVVEHNPNLTSEEK-KHLKQFLVYRYNPADPHDQ 84
K N + H+P + K +HLKQ RY+P P Q
Sbjct: 349 KQNTALTHHPRQQTRRKGQHLKQNTAMRYHPGQPTRQ 459
>04348
Length = 1170
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 135 DGLHTLACISGFNRDLSKPTIITP-LGHMFILKDLVVDMTNFYAQY 179
+ +HTL C+ + L +P ++ P L H F+ + N A +
Sbjct: 660 EFVHTLTCLCSLHISLDQPVLLAPMLCHAFVYNSCICXKCNLNATF 797
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00499390__3716.m00014glycine_cleavage_system_T_protein
(1724 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26997 88 3e-17
30969 31 3.4
>26997
Length = 407
Score = 87.8 bits (216), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Frame = +3
Query: 46 MPVQYKEGVLKEHLHTRESASLFDVSHMGQVKIRGKDSVDFIEKLIVGDIRGKPVAEGFL 105
MPVQYK G+ +EHL R S +FDVSHM Q + G D +E ++V D+ G G L
Sbjct: 3 MPVQYKTGIKQEHLQVRNSVGIFDVSHMLQSHVSGADRCAMMESVVVADVAGLKDNTGTL 182
Query: 106 SLILNKNAGIIDDTIVTKFDD-HIHMVVNGANKYIDLEHMKKLKEEFF-ANSDVSIEYLD 163
++ N GI+DD IV+ D ++++V N D MK +++F N DV +E+ +
Sbjct: 183 TVFTNDQGGILDDLIVSSTDQGYLYVVSNAGCIDKDWATMKAAEKKFQEENRDVKLEH-N 359
Query: 164 TRQLIAIQGP 173
LIA+QGP
Sbjct: 360 ANALIAVQGP 389
>30969
Length = 323
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = -2
Query: 1097 AQMKNLELYTIYDPNVPEIICSDPNRIRQIILNFLSNSLKFTQSGYIEIGIKLVDVGIYN 1156
+M+ L TI ++I S + ++++I N L +G I IKL D G+
Sbjct: 298 GKMQALSASTIRLLGSTQVITSVFSVVKELIENSLD-------AGSTSIEIKLEDYGLDK 140
Query: 1157 IYVRDTGIGITESNLENLFD--FCGKINYNKKDEVLNNQG 1194
I VRD G GI S++ F KI + E L + G
Sbjct: 139 IEVRDNGKGIQSSDVPVFAKRYFTSKITSHTDLETLESYG 20
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00773340__3676.m00028Ribosomal_protein_L7Ae_containing_prote
in
(286 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30226 84 5e-17
16219 42 2e-04
>30226
Length = 551
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = +2
Query: 210 KKDGKQVE-TKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVP 268
K GK+VE KKP + G N +T LIE K+A+LVVIAHDVDP+ELV+FLP LCRK VP
Sbjct: 2 KAKGKEVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVP 181
Query: 269 FAFVKGNRQLTQ 280
+ VKG +L +
Sbjct: 182 YCIVKGKARLGR 217
>16219
Length = 799
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 227 GLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGNRQL 278
G+ + I K+ +V+IA +V PI+++ +P C ND+P+ +V L
Sbjct: 381 GVREVQKAIRKKEKGIVLIAGNVSPIDVISHIPVFCENNDIPYCYVPSKEDL 536
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01053100__213.m00083Ribosomal_protein_L7Ae_containing_protei
n
(139 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
16219 82 5e-17
30308 27 3.6
>16219
Length = 799
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Frame = +3
Query: 5 EGVQQETQLY------VSPIANPIAPAXXXXXXXXXXXXXXXXXXXX-RGVKEVVKAIRK 57
E V++ETQ + + IA P+A +GV+EV KAIRK
Sbjct: 234 EDVEEETQSWQEKTSHLCVIAKPLASKKLTKRLHKTVKKANKXKXQLVKGVREVQKAIRK 413
Query: 58 GATGVCIMAADISPPDVLSHIPVICESKDIPYAFVKSRMELGTAAETKKPTSVVLLTAPE 117
G+ ++A ++SP DV+SHIPV CE+ DIPY +V S+ +LG A +K+ T +V++ +
Sbjct: 414 KEKGIVLIAGNVSPIDVISHIPVFCENNDIPYCYVPSKEDLGAALGSKRQTCMVMIKS-- 587
Query: 118 NAKTLKKYNSIHEKVKSI 135
+A L +N +KS+
Sbjct: 588 HADFLDSFNECEAGIKSL 641
>30308
Length = 411
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 87 IPYAFVKSRMELGTAAETKKPTSVVLLTAPENAKTLKKYNSIH 129
IPY +V L K+P+S V +T ++ + L ++N +H
Sbjct: 170 IPYQYVYDEFTLSLTQRYKEPSSEVAVT-QDSVRELNQHNYVH 295
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00471090__3686.m00070hypothetical_protein
(197 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
16361 84 5e-17
20833 67 5e-12
>16361
Length = 604
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Frame = -2
Query: 92 VFFTAQRKIESKWVKEHK---SQQRPRSRCLTYVYDAXXXXXXXPSTLIGKRIRARLDGT 148
V F AQR+I K ++ + Q+RPRSR LT V+D P+ L+GKRIR +LDG+
Sbjct: 369 VVFIAQRRILPKPTRKSRRKNKQKRPRSRTLTMVHDNILEDLCFPAELVGKRIRVKLDGS 190
Query: 149 SFYRIQLDQNDRDFLEEKLDAITHIYKTVTTREVTFEFKE 188
++QLD+N + +E K++ + +YK +T ++V FEF E
Sbjct: 189 RLIKVQLDKNQQTTVEHKVETFSAVYKKLTGKDVNFEFPE 70
>20833
Length = 454
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Frame = -1
Query: 116 SRCLTYVYDAXXXXXXXPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYK 175
SR LT V+D P+ L+GKRIR +LDG+ ++QLD+N + +E K++ + +YK
Sbjct: 286 SRTLTMVHDNILEDLCFPAELVGKRIRVKLDGSRLIKVQLDKNQQTTVEHKVETFSAVYK 107
Query: 176 TVTTREVTFEFKE 188
+T ++V FEF E
Sbjct: 106 KLTGKDVNFEFPE 68
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00016060__1.m00961oxidoreductase,
_short_chain_dehydrogenase/reductase_family_protein
(260 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12758 82 2e-16
03983 65 3e-11
03060 62 2e-10
05690 55 3e-08
05235 54 6e-08
36857 39 2e-07
18534 49 3e-06
18041 44 7e-05
11922 42 2e-04
28229 42 3e-04
27168 36 0.012
30783 32 0.24
20818 31 0.48
06396 27 6.6
>12758
Length = 804
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 8/202 (3%)
Frame = -1
Query: 61 DVSDEAQVKALVDACVATFGAIHILLNSAGVISAGLIVGGKNQDQTIKTEEMNRVLGVNV 120
D++ E K +V+ V FG ++IL+N AG+I G I + ++ +R+ NV
Sbjct: 717 DLTKEDDTKRVVEETVKQFGRLNILVNCAGIIELGNI-------ENTSLDQYDRMFNTNV 559
Query: 121 VGTFNVTKYVALQMVKQQPLNEFKERGVIVNVASVAGIEGQRGQTVYAASKGAIIGMTLP 180
+++T +V Q G IVNV+SV G+ Y +K AI T
Sbjct: 558 RSVYHLTMLAVPHLVNTQ--------GNIVNVSSVNGMRSFPNVLAYCMAKSAIDQFTRC 403
Query: 181 LARDLGKFGVRVCTIAPGIFQTPMGA--GMSD----KIIEALSKASALGRVGNPTEFADA 234
+A +L VRV + PG+ + + G+ D K +E + ALGR G P E A
Sbjct: 402 VALELAPKKVRVNGVNPGVIISELQKRGGLDDEAYAKFLERSKETHALGRPGQPEEVARX 223
Query: 235 ILGLATN--SFVTGSIFRLDGG 254
I LA+ SF+TG+ +DGG
Sbjct: 222 IAFLASEDASFITGASLPVDGG 157
>03983
Length = 1099
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 4/231 (1%)
Frame = +2
Query: 10 LVTGGTSGLGEATVYALLEKGVRVFIADRNEEKGLQIQTKYGQD-RCRFQKCDVSDEAQV 68
L+TG SGLG+ Y + G + + D N E ++ GQ C+ D+S Q+
Sbjct: 188 LITGAGSGLGKLMAYRFMGLGCDLVLWDINTEAIEAMERDMGQQVSCKAYTVDLSSREQI 367
Query: 69 KALVDACVATFGAIHILLNSAGVISAGLIVGGKNQDQTIKTEEMNRVLGVNVVGTFNVTK 128
D G + IL+N+AG+++ G K D + + + VN F K
Sbjct: 368 YKAADQVKREVGGVDILVNNAGIVT-----GRKFLD--CPDSLIEKTMEVNSNAHFWTVK 526
Query: 129 YVALQMVKQQPLNEFKERGVIVNVASVAGIEGQRGQTVYAASKGAIIGMTLPLARDL--- 185
M+ Q +G I+++AS AG+ G G Y ASK A +G L +L
Sbjct: 527 AFLPNMLAQN-------KGHIISIASSAGLFGVTGLADYCASKFAAVGFDESLRFELEAM 685
Query: 186 GKFGVRVCTIAPGIFQTPMGAGMSDKIIEALSKASALGRVGNPTEFADAIL 236
GK GV + P T M G+ + L + NP D I+
Sbjct: 686 GKTGVHTTVVCPYFINTGMFDGVKTRFPLILP-------ILNPERTVDKIM 817
>03060
Length = 1893
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 17/225 (7%)
Frame = -1
Query: 8 VALVTGGTSGLGEATVYALLEKGVRVFIADRNEEKGLQIQTKYGQDRCRFQKC------- 60
V LVTG +SGLG+A + G +V +A R+ E+ ++ + + C
Sbjct: 1683 VVLVTGASSGLGKACAKVFHQHGCQVILAGRSVERLNAVKDYLTKSEGEVKACEPSVLAM 1504
Query: 61 DVSDEAQVKALVDACVATFGAIHILLNSAGVISAGLIVGGKNQDQTIKTEEMNRVLGVNV 120
D+ D ++ L + V FG + +++N+AG+ G I +D +I+ ++ +++ VN
Sbjct: 1503 DLEDLNSLQQLAERAVELFGKVDVVINNAGISYRGCI-----EDTSIQVDQ--KLMAVNY 1345
Query: 121 VGTFNVTKYVALQMVKQQPLNEFKERGVIVNVASVAGIEGQRGQTVYAASKGAIIGMTLP 180
G + K + M + + G IV ++SV G ++ Y+ASK A+
Sbjct: 1344 FGHVALIKGLLPHM-------QARNSGHIVGISSVQGKISIPYRSAYSASKHALQAFFDC 1186
Query: 181 LARDLGKFGVRVCTIAPGIFQTPMG----------AGMSDKIIEA 215
L +L ++V ++PG +T + G+ DK EA
Sbjct: 1185 LRAELSCTKIKVSLLSPGYIKTNLSNNAVCGDGTTYGVMDKTTEA 1051
>05690
Length = 1192
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 4/197 (2%)
Frame = +2
Query: 10 LVTGGTSGLGEATVYALLEKGVRVFIADRNE--EKGLQIQTKYGQDRCRFQKCDVSDEAQ 67
+TG +GLG L + GV+VF E ++ K Q C DV
Sbjct: 185 FITGCDAGLGHLLAIHLDKLGVKVFAGCLFPGGEGEQTLKAKCSQRLCTV-PLDVCSLEI 361
Query: 68 VKALVDACVATFGAIHI--LLNSAGVISAGLIVGGKNQDQTIKTEEMNRVLGVNVVGTFN 125
V D + ++N+AG++ G + + + +++++L VN G N
Sbjct: 362 VTTAADTVKRELDGQELWGVVNNAGIMHIGCL-------EVMGQADVDKILDVNYRGQVN 520
Query: 126 VTKYVALQMVKQQPLNEFKERGVIVNVASVAGIEGQRGQTVYAASKGAIIGMTLPLARDL 185
V + L ++ + RG +VNVAS GI VY ASK A+ +T L +L
Sbjct: 521 VIR-AFLPFLR-------RSRGRLVNVASNTGIAPVPYHAVYCASKAAVAALTESLRLEL 676
Query: 186 GKFGVRVCTIAPGIFQT 202
FGVRV TI P ++T
Sbjct: 677 QPFGVRVSTIIPSGYRT 727
>05235
Length = 944
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 107/264 (40%), Gaps = 19/264 (7%)
Frame = -2
Query: 10 LVTGGTSGLGEATVYALLEKGVR-VFIADRNEEKGLQIQTKYGQDRC--RFQKCDVS-DE 65
+ G G+G T + +++ G + + I DR E + K + + DV+
Sbjct: 859 IFVAGLGGIGLDTNHEIVKSGPKNLVILDRIENPAAIAELKAINPKVTISYYPYDVTVSV 680
Query: 66 AQVKALVDACVATFGAIHILLNSAGVISAGLIVGGKNQDQTIKTEEMNRVLGVNVVGTFN 125
A+ L+ A + +L+N AG++ ++ R + VN GT N
Sbjct: 679 AESVKLLKTVFAQLKKVDLLINGAGILD---------------DHQIERTIAVNFTGTVN 545
Query: 126 VTKYVALQMVKQQPLNEFKER------GVIVNVASVAGIEGQRGQTVYAASKGAIIGMTL 179
T + EF ++ GVI N+ SV G VY+ASK + T
Sbjct: 544 TTTAIM----------EFWDKRKGGPGGVIANICSVTGFNSIYQVPVYSASKAXALSFTN 395
Query: 180 PLARDLGKFGVRVCTIAPGIFQTPMGAGMSDKIIEALSKASALGR--VGNPTEFADAILG 237
LA+ GV V +I PGI TP + +K L S + + NPT+ + L
Sbjct: 394 SLAKLAHITGVTVYSINPGITHTP----LVNKFNSWLDVESHVAEKLLANPTQTS---LA 236
Query: 238 LATNSFV-------TGSIFRLDGG 254
A N FV G+I++LD G
Sbjct: 235 CAKN-FVKAIEANKNGAIWKLDLG 167
>36857
Length = 697
Score = 38.9 bits (89), Expect(2) = 2e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Frame = +3
Query: 145 ERGV-IVNVASVAGIEGQRGQTVYAASKGAIIGMTLPLA--RDLGKFGVRVCTIAPGIFQ 201
ERG I+N++S G+ Q VY +K ++ + +A +D G+RV T+ P
Sbjct: 252 ERGASIINISSAGGLRPQPVGPVYCGTKAGVMMFSRSVAAHKDYIDNGIRVNTLCPAFVD 431
Query: 202 TPMGAGMSDKIIEALSKASALGRVG--NPTEFADAILGLATNSFVTGSIFRLD---GGIR 256
TP+ A ++ + + + A +L +G + E A L T+ G++ + G I
Sbjct: 432 TPLVAKLASGLSDDTAAAKSLEEIGIMSVEEVAKGFYELITDDSRNGAVLAMSKHKGKIY 611
Query: 257 LP 258
+P
Sbjct: 612 VP 617
Score = 33.5 bits (75), Expect(2) = 2e-07, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 45 QIQTKYGQDRCRFQKCDVSDEAQVKALVDACVATFGAIHILLNSAGVISAGLIVGGKNQD 104
+ Q +GQ+ F K DV+ + + ATFG + I++N+AG +GG+ D
Sbjct: 5 EFQKDFGQNNVIFIKADVTSDEDTEKAFKQXKATFGRLDIVVNNAG-------IGGERDD 163
Query: 105 QTIKTEEMN 113
K ++N
Sbjct: 164 TWEKCVDIN 190
>18534
Length = 406
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%)
Frame = -2
Query: 55 CRFQKCDVSDEAQVKALVDACVATFGAIHILLNSAGVISAGLIVGGKNQDQTIKTEEMNR 114
C+ D+SD Q+ + G + +L+N+AG++ + D+ I+
Sbjct: 402 CKGYVVDISDREQIYQRAAQVIDDVGHVDVLINNAGIVCCKPF--WELHDRVIQN----- 244
Query: 115 VLGVNVVGTFNVTKYVALQMVKQQPLNEFKERGVIVNVASVAGIEGQRGQTVYAASKGAI 174
+N++ + K M++ RG IV V SV G+ G G + YAA+K A
Sbjct: 243 TYNINIISHYWTVKAFLPHMMRH-------NRGHIVTVGSVTGMLGTYGCSDYAATKYAC 85
Query: 175 IGMTLPLARDLGKFG 189
IG L DL G
Sbjct: 84 IGFHESLLTDLKAHG 40
>18041
Length = 547
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 12/202 (5%)
Frame = -2
Query: 13 GGTSGLGEATVYALLEKGVRVFIADRNEEKGLQIQTKYGQDRCR---------FQKCDVS 63
G T G+G+ L EKG+ + + RN EK L K D+ + F+ D+
Sbjct: 546 GSTDGIGKCFALQLAEKGLDIVLISRNPEK-LSAVAKEIVDQHKVSVKVITADFKNADIY 370
Query: 64 DEAQVKALVDACVATFGAIHILLNSAGVI---SAGLIVGGKNQDQTIKTEEMNRVLGVNV 120
D + + T I IL+N+ G++ + G + +Q + ++ VN+
Sbjct: 369 DNIKRQ-------LTGLDIGILVNNVGMLNRRNPGYFCEADDFEQFHQD-----IINVNI 226
Query: 121 VGTFNVTKYVALQMVKQQPLNEFKERGVIVNVASVAGIEGQRGQTVYAASKGAIIGMTLP 180
+ +T V +M++ ++RG+I+N+AS A I +VY+ +K I T
Sbjct: 225 LACVQMTGIVLPEMLE-------RKRGLIINIASGAAIRPLPFFSVYSGTKAFISHFTQA 67
Query: 181 LARDLGKFGVRVCTIAPGIFQT 202
L + GV + + P + T
Sbjct: 66 LNMEYSSQGVTIQLLIPNLVAT 1
>11922
Length = 2153
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 11/199 (5%)
Frame = +1
Query: 10 LVTGGTSGLGEATVYALLEKGVRVFIADRNEEKGLQIQ-TKYGQDR------CRFQKC-- 60
+TG + G+G+A L + G + IA + E ++ T Y + + C
Sbjct: 112 FITGASRGIGKAIAVKLAKDGANIVIAAKTAEAHPKLPGTIYTAAKEVEEAGGKALPCIV 291
Query: 61 DVSDEAQVKALVDACVATFGAIHILLNSAGVISAGLIVGGKNQDQTIKTEEMNRVLGVNV 120
D+ +E QVK V A FG I IL+N+A IS + G Q + + MN G+N
Sbjct: 292 DIRNEDQVKVAVKAAADKFGGIDILVNNASAIS----LTGTLQTPMKRYDLMN---GINA 450
Query: 121 VGTFNVTKYVALQMVKQQPLNEFKERGVIVNVASVAGIEGQ--RGQTVYAASKGAIIGMT 178
GT+ ++ +++ + I+N++ + + +G Y +K +
Sbjct: 451 RGTYLCSQVCLPYLLRGSNPH-------ILNISPPLNMSAKWFQGHVAYTMAKYGMSMCA 609
Query: 179 LPLARDLGKFGVRVCTIAP 197
L +A + GV V + P
Sbjct: 610 LGMAEEFRDDGVAVNALWP 666
>28229
Length = 633
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = -1
Query: 143 FKERGVIVNVASVAGIEGQRGQTVYAASKGAIIGMTLPLARDLGKFGVRVCTIAPGIFQT 202
K +G +VNV+S AGI G Y SK A+ T ++ +L GVRV ++ PG T
Sbjct: 285 LKTKGAVVNVSSCAGICHFPGALSYGISKAALDQFTKIVSLELAPQGVRVNSVNPGFVVT 106
Query: 203 PMGA--GMSDKIIEALSK----ASALGRVG 226
+ + G+ D+ ++L + + +GRVG
Sbjct: 105 NIHSRIGIVDEAYKSLHERAINSHPMGRVG 16
>27168
Length = 665
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +3
Query: 8 VALVTGGTSGLGEATVYALLEKGVRVFIADRNEEKG------LQIQTKYGQDRCRFQKCD 61
VAL+TG G+G T +L G + +A RN + ++ + RCR D
Sbjct: 192 VALITGANCGIGFETARSLALHGCEIILACRNLATAQEAIDRIAVERPAARARCRTASLD 371
Query: 62 VSDEAQVKALVDACVATFGAIHILLNSAGVIS 93
+ + VK V+ + G I L+ +AGV +
Sbjct: 372 LGSLSDVKKFVEQIRQSVGHIDYLILNAGVFA 467
>30783
Length = 765
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Frame = +2
Query: 76 VATFGAIHILLNSAGVISAGLIVGGKNQDQTIKTEEMNRVLGVNVVGTFNVTKYVALQMV 135
++TFG + IL+N+AGV A + K D T E+ + ++ +N+ F ++K +A +++
Sbjct: 14 ISTFGRLDILVNNAGV--ARFV---KPCDTT--EEQYDEIMDINMKSVFFLSKLLAPELI 172
Query: 136 KQQ 138
K++
Sbjct: 173 KRK 181
>20818
Length = 613
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +1
Query: 159 EGQRGQTVYAASKGAIIGMTLPLARDLGKFGVRVCTIAPG--IFQTPMGAGM-SDKIIEA 215
E RG+ ++ + +T L+ + GVR+ +APG I+ A S I
Sbjct: 1 ESTRGR-----ARAGVENLTKSLSIEWASDGVRINCVAPGSSIYSETAAANYGSLDIFSK 165
Query: 216 LSKASALGRVGNPTEFADAILGLATNS--FVTGSIFRLDGGIRL 257
++ L R G E + A+ L + + F+TG ++DGG L
Sbjct: 166 NLESVPLNRFGTTEEVSAAVCFLLSPAAAFITGETIKVDGGSSL 297
>06396
Length = 1143
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 86 LNSAGVISAGLIVGGKNQDQTIKTEEMNR 114
L+ GV+ GLIVGG Q +KT R
Sbjct: 661 LDHGGVVQPGLIVGGTGQQGLLKTGPTPR 747
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00703660__110.m00115Leucine_Rich_Repeat_family_protein
(584 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
14078 69 3e-16
08106 60 2e-09
30747 51 2e-06
27897 40 0.003
19531 37 0.033
20802 32 0.92
22520 30 2.3
18711 30 3.3
>14078
Length = 1045
Score = 68.6 bits (166), Expect(2) = 3e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%)
Frame = -1
Query: 160 QELYLTANKIKTVVGIDSLVSLTKLHLRLNNIEQFEENFPNLENLQYLNLRENKIDKFEE 219
Q+L L AN IK + G+ LT LHLR N +E + +L+ LQY+NLR N + +E
Sbjct: 358 QKLVLAANVIKRIEGLGRCAGLTTLHLRDNQLESLDGFTDDLKELQYVNLRGNLMSSVKE 179
Query: 220 ILKLAALPNLKTLVHSFNPLINKNPNYLYETINGLLKLQRINKVEVT 266
+ KL L L+ L S NP+ +++ +Y E + L L+R++K E T
Sbjct: 178 MTKLKCLSFLRALALSENPVADED-DYRMEVLIALRTLERLDKDEFT 41
Score = 35.0 bits (79), Expect(2) = 3e-16, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 45/141 (31%)
Frame = -2
Query: 68 ALTKIDLHANNIQDITVLGNLPNLIWLDYLNISKNRI---------SELLTPKA------ 112
A ++DLH + DI L + I + Y++ISKN + + +LT KA
Sbjct: 756 AYVRVDLHERGVTDIVTLKSF---IHVRYVDISKNALKDISPLSALTHMLTLKADENLLT 586
Query: 113 ----------------------------PNLIHLNLNENLVDKMETFEGHE--SLKILEL 142
P L HL LN N + ++ +G + L LEL
Sbjct: 585 SVQLEEMPFLQVASFTHNKISSTEGFNHPMLEHLILNNNNISQVTGLDGTKLSRLHTLEL 406
Query: 143 RGNRIQTTQQLVNMPKLQELY 163
RGN+++TT + +P ++ L+
Sbjct: 405 RGNKLETTDG-IYLPNIRNLF 346
>08106
Length = 997
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%)
Frame = +2
Query: 166 ANKIKTVVGIDSLVSLTKLHLRLNNIEQFEENFPNLENLQYLNLRENKIDKFEEILKLAA 225
AN IK + G+ VSL LHLR N +E + L+ LQY+N+R N + +E KL
Sbjct: 5 ANVIKRIEGLGRCVSLATLHLRDNQLENLDGFTEELKELQYVNVRGNLLTSIKEAAKLKD 184
Query: 226 LPNLKTLVHSFNPLINKNPNYLYETINGLLKLQRINKVEVT 266
LP L+ L + NP+ +++ +Y E + L L+R++K E T
Sbjct: 185 LPLLRALSLAENPVADED-DYRLEILIALRCLERLDKDEFT 304
>30747
Length = 1168
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 5/190 (2%)
Frame = +3
Query: 55 SLDSLQAIFANYKALTKID----LHANNIQDITVLGN-LPNLIWLDYLNISKNRISELLT 109
+L L+ + + LTK+D L NI + + N + NL L YL
Sbjct: 456 ALKKLKCLRLDSNRLTKLDTNELLSCVNISTLDLSNNHITNLSALSYL------------ 599
Query: 110 PKAPNLIHLNLNENLVDKMETFEGHESLKILELRGNRIQTTQQLVNMPKLQELYLTANKI 169
PNL L ++ N + K+ + L L+L NR+ + +P LQ L ++ N++
Sbjct: 600 ---PNLEELFVSGNSIQKLTDLHRCKKLSELDLSRNRLVDISGISGLPALQTLDMSDNRL 770
Query: 170 KTVVGIDSLVSLTKLHLRLNNIEQFEENFPNLENLQYLNLRENKIDKFEEILKLAALPNL 229
K+V + L SL L+L N I + LQ L L +N + ++++ L L +L
Sbjct: 771 KSVTSLGKLKSLETLNLNGNQISELLGWGSCFPKLQILKLCDNMVTAWKQVCCLKELGDL 950
Query: 230 KTLVHSFNPL 239
+ + NP+
Sbjct: 951 NEVYLAGNPV 980
>27897
Length = 774
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +1
Query: 145 NRIQTTQQLVNMPKLQELYLTANKIKTVVGIDSLV-SLTKLHLRLNNIEQFEENFPNLEN 203
N I+ L + L+ L L N IK+ G++++ +L +L + NNIE+ + L+
Sbjct: 7 NCIEKIANLNGLKHLKILSLARNNIKSFTGLEAVADTLEQLWISYNNIEKLK-GLNVLKK 183
Query: 204 LQYLNLRENKIDKFEEILKLAALPNLKTLVHSFNPL 239
L+ L + N + E +KLA LP L+ L+ NPL
Sbjct: 184 LKVLYMANNSVKDNAEFVKLADLPCLEELLFLGNPL 291
>19531
Length = 415
Score = 36.6 bits (83), Expect = 0.033, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -2
Query: 46 FTVLDLNSKSLDSLQAIFANYKALTKIDLHANNIQDI-TVLGNLPNLIWLDYLNISKNRI 104
T L L S +L SL A ALT +D+H N++Q + LG L N L LNIS N++
Sbjct: 366 LTKLILASNALTSLGEGLAQLPALTVLDVHDNHLQSLPNALGELEN---LQKLNISHNQL 196
Query: 105 SEL 107
EL
Sbjct: 195 VEL 187
>20802
Length = 526
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Frame = +2
Query: 158 KLQELYLTANKIKTVVGIDSLVSLTKLHLRLNNIEQFEENFPNLENLQYLNLRENKIDKF 217
+L+ LYL +N I + + L L L+L LNN+E+ EN E+L+ L+L N + +
Sbjct: 254 ELKILYLQSNLIPKIENVSRLKKLEYLNLALNNVEKV-ENLEGCESLKKLDLTVNFVGEL 430
Query: 218 EEILKLAALPNLKTL 232
I L NL+ L
Sbjct: 431 TSIECLKGNYNLEEL 475
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +2
Query: 68 ALTKIDLHANNIQDITVLGNLPNLIWLDYLNISKNRISELLTPKAPN------LIHLNLN 121
L ++ LH +I+ I L + + YL + L PK N L +LNL
Sbjct: 185 TLEEVTLHQQDIERIEYLDKWCRELKILYLQSN-------LIPKIENVSRLKKLEYLNLA 343
Query: 122 ENLVDKMETFEGHESLKILELRGN 145
N V+K+E EG ESLK L+L N
Sbjct: 344 LNNVEKVENLEGCESLKKLDLTVN 415
>22520
Length = 962
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 36/77 (46%)
Frame = +2
Query: 367 KAFRNSRSKTERQSIAKQQYDEWSKYVEIRKSQLTEDFQIPKNFQSQMDQVWGFVKNRKE 426
+ F + + I+ + ++ V++++ QL DF++ ++ GF+KN+
Sbjct: 2 ETFEQTLTTCATSDISVSPHSHYTASVDMQERQLLADFKVWVRMSMPAEEARGFIKNKNG 181
Query: 427 STIHSSKMLDFHYELMN 443
T+ F Y+L+N
Sbjct: 182 ETV-------FFYKLLN 211
>18711
Length = 446
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = -2
Query: 33 SEPKLSIDRTGIHFTVLDLN--------SKSLDSLQAIFANYKALTKIDLHANNIQ 80
S+P L+I TG HFT+L S+++ S + A Y+ LT+ DLH NIQ
Sbjct: 196 SQPALTIHGTGQHFTLLAYIG*QQSA*LSENISSFPSSRAYYQ-LTR*DLHNMNIQ 32
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00378550__40.m00194Ubiquitin_carboxyl-
terminal_hydrolase_family_protein
(3041 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11884 85 5e-16
08419 42 0.003
03515 35 0.45
35122 33 1.8
04261 33 1.8
24393 32 5.1
>11884
Length = 952
Score = 84.7 bits (208), Expect = 5e-16, Method: Composition-based stats.
Identities = 71/258 (27%), Positives = 110/258 (42%), Gaps = 1/258 (0%)
Frame = +3
Query: 1937 SEAIKKHFGGVFSNEIISKGCQHYSEREEEYLSISLQVKNKKDIKQSLEALTQGEMLEGD 1996
+ I + FGG +++ C S E ++ +SL +K+ ++ +L + E L+
Sbjct: 3 TTVIHQVFGGFLRSQVQCLKCGARSNTFEPFMDLSLNLKDVNTVEAALGKYVKPETLDAA 182
Query: 1997 NSYHCEKCDKKVVALKRTCLKKLPNHLILVLKRFEFNYDNMQKVKINQFCSFPFEIDFQE 2056
N+Y C+KC KK A KR L K+PN L + L RF F KIN+ FP +++ ++
Sbjct: 183 NAYDCQKCRKKTQARKRFSLHKIPNVLTIQLNRFGF---TRAAGKINKHIQFPEKLNVRQ 353
Query: 2057 FSQQGLRKAEQAQNKQQNHGNHAEYPDNYFKYRLYGIGIHMG-IADSGHYYSYIRDREAQ 2115
+ + R+ + EY Y LYG+ IH G + GHYY Y+R
Sbjct: 354 YMSR--RQGD------------PEY------YHLYGVLIHSGHHCNMGHYYCYVR----- 458
Query: 2116 NGENKWMEFNDNVVKFFDPKDIPNEAFGGEEKWKQFYMMENMNMMNQFRQKIRNAYLLFY 2175
+ N W ND+ V + FG + AYLLFY
Sbjct: 459 SPANSWYIMNDSSVHQVSASRV----FGSQ------------------------AYLLFY 554
Query: 2176 DRIEKFDEDQFQQASASP 2193
+ FQQ+S+ P
Sbjct: 555 TKAVP----SFQQSSSKP 596
>08419
Length = 731
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 1/167 (0%)
Frame = +1
Query: 2012 KRTCLKKLPNHLILVLKRFEFNYDNMQKVKINQFCSFPFE-IDFQEFSQQGLRKAEQAQN 2070
+R L +LP LI+ L RF++N K+ S + ++ Q+ + + E +
Sbjct: 115 RRCLLSQLPECLIIQLMRFQYNAQQGCSTKLRAPVSIRLKGLNLQDLMCDTVTQREDCVS 294
Query: 2071 KQQNHGNHAEYPDNYFKYRLYGIGIHMGIADSGHYYSYIRDREAQNGENKWMEFNDNVVK 2130
QN Y LYG+ +H+G ADS H+ YI A +++W ++D V
Sbjct: 295 PGQNSSQ---------MYDLYGLCLHIG-ADSTHHGHYISYSLAS--DSRWYRYDDEAVT 438
Query: 2131 FFDPKDIPNEAFGGEEKWKQFYMMENMNMMNQFRQKIRNAYLLFYDR 2177
+ +E + RQ NAY+LFY R
Sbjct: 439 EVN--------------------IEYELTTKEVRQ---NAYILFYKR 510
>03515
Length = 2030
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 2087 KYRLYGIGIHMGIADSGHYYSYIRDREAQNGENKWMEFNDNVVK 2130
+Y LY + H GI GHY +Y ++N KW +ND+ K
Sbjct: 1970 QYDLYAMSCHTGIMGGGHYVAY-----SKNPNGKWYCYNDSSCK 1854
>35122
Length = 1031
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 1828 GIKNLGCICYMNALLQQLFMIPSFRQTI 1855
G+ NLG CYMNA +Q L +P R +
Sbjct: 765 GLANLGNTCYMNATIQCLRAVPELRDAL 682
>04261
Length = 1792
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 1999 YHCEKCDKKVVALKRTCLKKLPNHLILVLKRFEF 2032
Y CE C + A + KKLP LIL LKRFE+
Sbjct: 419 YSCEFCHQHTKAELSSRFKKLPRILILYLKRFEY 520
>24393
Length = 756
Score = 31.6 bits (70), Expect = 5.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 72 MQQNENVNYCFESIFISSRAIWISSQIKGT 101
MQQ ++ F S++ISSRA W S+QI T
Sbjct: 436 MQQTQSKTCHFRSLWISSRATWKSNQIMST 525
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00016360__1.m00990Regulator_of_chromosome_condensation
(462 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02938 82 6e-16
20162 49 4e-06
03352 35 0.064
26574 34 0.13
39525 32 0.38
>02938
Length = 1718
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 129/302 (42%), Gaps = 10/302 (3%)
Frame = +3
Query: 131 GSLYTFGWGQNGALGNGAKEFQLSPSPVSFFNXXXXXXXXXXXGESYTIAVTENGEVYSW 190
G ++ FG G LG GA++ PS V G S+TI TE+G +Y++
Sbjct: 15 GRVFMFGPNDYGQLGIGAQKVANRPSCVKSLKHEKARLVAC--GRSHTIVATESGNIYAF 188
Query: 191 GYGGEPSSKINLDFFRNAILPQRCGALGSGDNKNRLTPQQIANLKADGYKNISGGDNFAT 250
G GE G LG P+Q+ +L+A +K ++ G + +
Sbjct: 189 GANGE-------------------GQLGVEGVTETNLPKQVDSLQATPWKMLAAGCDHSL 311
Query: 251 LVNQSGEVINWGTGLFGSLGNGSDYPLFTPEVNAYFKHLKEHEGLTVQSIKSAGHFSAAL 310
+ + G V WG G LG G D + P + G +V I S + SA +
Sbjct: 312 ALTEDGRVFVWGGNGEGQLGMGEDSDIPVPR--------QLDVGQSVACIASGYYHSALV 467
Query: 311 LSNGKLYTFGVNTQGQLGIRENLGHNTDQNARLPTPVVDRHFVGQKVVDFEVGENTLVFL 370
+G+LYTFG + G+LG L +TD+ + P V+ + KV G + V L
Sbjct: 468 TESGELYTFGESDGGKLG----LNGDTDE-CKTPQQVM---AINDKVKSVSCGGSHTVAL 623
Query: 371 TDKNEVFFSG------LELAYQPIRWEIPT----DKKIVKLAASKDTFAAVTETGKIYQF 420
T+K EV+ G L L + E P+ K+ ++ ++ V+E G++Y F
Sbjct: 624 TEKGEVYAFGEGSSGQLGLGVSTLESESPSLLKLPFKVAQVCCGENFTTVVSERGQLYTF 803
Query: 421 NE 422
+
Sbjct: 804 GD 809
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 7/225 (3%)
Frame = +3
Query: 57 PQMISKTQA--FARLFQLSSKSFSTVKGGNLYTWG---QYASGTGFETASAVPRKVDYFS 111
P+ + QA + L S + + G ++ WG + G G ++ VPR++D
Sbjct: 243 PKQVDSLQATPWKMLAAGCDHSLALTEDGRVFVWGGNGEGQLGMGEDSDIPVPRQLD-VG 419
Query: 112 GNVSKVAMGPYHTAVITNDGSLYTFGWGQNGALG-NGAKEFQLSPSPVSFFNXXXXXXXX 170
+V+ +A G YH+A++T G LYTFG G LG NG + +P V N
Sbjct: 420 QSVACIASGYYHSALVTESGELYTFGESDGGKLGLNGDTDECKTPQQVMAIN---DKVKS 590
Query: 171 XXXGESYTIAVTENGEVYSWGYGGEPSSKINLDFFRNAILPQRCGALGSGDNKNRLTPQQ 230
G S+T+A+TE GEVY++G G G LG G + L +
Sbjct: 591 VSCGGSHTVALTEKGEVYAFGEGSS-------------------GQLGLG--VSTLESES 707
Query: 231 IANLKAD-GYKNISGGDNFATLVNQSGEVINWGTGLFGSLGNGSD 274
+ LK + G+NF T+V++ G++ +G G G L G +
Sbjct: 708 PSLLKLPFKVAQVCCGENFTTVVSERGQLYTFGDGRHGKLALGQE 842
>20162
Length = 1121
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Frame = +1
Query: 77 FSTVK--GGNLYTWG--------QYASGTGFETASAV-------PRKVDYF--------- 110
FST+ GNLY++G + G F T++ + PRKV F
Sbjct: 112 FSTMSDINGNLYSFGCPEYGQLGHNSDGKYFVTSNKMEYKCEMTPRKVSVFIEKTRDGHV 291
Query: 111 ----SGNVSKVAMGPYHTAVITNDGSLYTFGWGQNGALGNGAKEFQLSPSPVSFFNXXXX 166
++ +VA G HT ++ + L+++G+G G LG+ + +L P + FF+
Sbjct: 292 MPITDVDIREVACGLNHTLIMDSKKRLFSWGFGGYGRLGHAEPKDELVPRLIKFFDGPGR 471
Query: 167 XXXXXXXGESYTIAVTENGEVYSWG 191
G S+ + V E+G +Y WG
Sbjct: 472 GGSQIQCGSSFCMTVNEHGALYFWG 546
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 25/228 (10%)
Frame = +1
Query: 130 DGSLYTFGWGQNGALGNGAK------------EFQLSPSPVSFF----------NXXXXX 167
+G+LY+FG + G LG+ + + +++P VS F
Sbjct: 133 NGNLYSFGCPEYGQLGHNSDGKYFVTSNKMEYKCEMTPRKVSVFIEKTRDGHVMPITDVD 312
Query: 168 XXXXXXGESYTIAVTENGEVYSWGYGGEPSSKINLDFFRNAILPQRCGALGSGDNKNRLT 227
G ++T+ + ++SWG+GG G LG + K+ L
Sbjct: 313 IREVACGLNHTLIMDSKKRLFSWGFGGY-------------------GRLGHAEPKDELV 435
Query: 228 PQQIANLKADGY--KNISGGDNFATLVNQSGEVINWGTGLFGSLGNGSDYPLFTPEVNAY 285
P+ I G I G +F VN+ G + W G P T E Y
Sbjct: 436 PRLIKFFDGPGRGGSQIQCGSSFCMTVNEHGALYFW----------GQSKP--TGEATMY 579
Query: 286 FKHLKEHEGLTVQSIKSAGHFSAALLSNGKLYTFGVN-TQGQLGIREN 332
K +++ G V+SI + S L ++ + ++G + T G+LG EN
Sbjct: 580 PKLVQDLSGWKVRSIGCC-YRSIVLCADDSVVSWGPSPTYGELGYGEN 720
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 280 PEVNAYFKHLKEHEGLTVQSIKSAGHFSAALLSNGKLYTFGVNTQGQLGIRENLGHNTD 338
P+ H E +G Q+ + G FS NG LY+FG GQ LGHN+D
Sbjct: 34 PDTARSLSHAGEVQGPPHQTHRVRGEFSTMSDINGNLYSFGCPEYGQ------LGHNSD 192
>03352
Length = 935
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +2
Query: 73 SSKSFSTVKGGNLYTWGQYASGTGFETASAVPRKVDYFSGNVSKVAMGPYHTAVITNDGS 132
S S K G +Y +G+ S + D V++VA+G HT +T+ G
Sbjct: 239 SGSSAVVTKDGEVYMFGKDTSHCDHASGHVT----DLKDVVVTQVALGKAHTVALTSKGQ 406
Query: 133 LYTFGWGQNGALG 145
L+TFG G G
Sbjct: 407 LFTFGINNKGQCG 445
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Frame = +2
Query: 219 SGDNKNRLTPQQIANLKADGYKN-----ISGGDNFATLVNQSGEVINWGTGLFGSLGNGS 273
SG K R P+ + K +N ++ + +V + GEV +FG +
Sbjct: 143 SGAAKGRRQPKSVKPKKMIRVENKQVVFVACNSGSSAVVTKDGEVY-----MFGKDTSHC 307
Query: 274 DYPLFTPEVNAYFKHLKEHEGLTVQSIKSAGHFSAALLSNGKLYTFGVNTQGQLG 328
D+ + + LK+ + V + + AL S G+L+TFG+N +GQ G
Sbjct: 308 DH------ASGHVTDLKD---VVVTQVALGKAHTVALTSKGQLFTFGINNKGQCG 445
>26574
Length = 441
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 217 LGSGDNKNRLTPQQIANLKADGYKNISGGDNFATLVNQSGEVINWGTGLFGSLGNGSDYP 276
LG G + + P++++ L+ +++ G SGEV WG G LG+G+
Sbjct: 30 LGHGTDDHVRRPRRVSALQGKKVIDVACGSLHCVACTDSGEVFTWGDNDEGQLGDGTTNA 209
Query: 277 LFTPEVNA 284
+ P + A
Sbjct: 210 IQRPRMVA 233
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 261 WGTGLFGSLGNGSDYPLFTPEVNAYFKHLKEHEGLTVQSIKSAGHFSAALLSNGKLYTFG 320
WG G + LG+G+D + P + + +G V + A +G+++T+G
Sbjct: 6 WGKGDYHRLGHGTDDHVRRP------RRVSALQGKKVIDVACGSLHCVACTDSGEVFTWG 167
Query: 321 VNTQGQLG 328
N +GQLG
Sbjct: 168 DNDEGQLG 191
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = +3
Query: 328 GIRENLGHNTDQNARLPTPVVDRHFVGQKVVDFEVGENTLVFLTDKNEVFFSG 380
G LGH TD + R P V G+KV+D G V TD EVF G
Sbjct: 15 GDYHRLGHGTDDHVRRPRRV--SALQGKKVIDVACGSLHCVACTDSGEVFTWG 167
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 44/111 (39%)
Frame = +3
Query: 135 TFGWGQNGALGNGAKEFQLSPSPVSFFNXXXXXXXXXXXGESYTIAVTENGEVYSWGYGG 194
T+G G LG+G + P VS G + +A T++GEV++WG
Sbjct: 3 TWGKGDYHRLGHGTDDHVRRPRRVSALQGKKVIDVAC--GSLHCVACTDSGEVFTWGDND 176
Query: 195 EPSSKINLDFFRNAILPQRCGALGSGDNKNRLTPQQIANLKADGYKNISGG 245
E D NAI R A G NR+ +L +K +S G
Sbjct: 177 EGQLG---DGTTNAIQRPRMVAALQGKKINRVACGSAHSLAWSTHKPVSAG 320
>39525
Length = 450
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = -3
Query: 293 EGLTVQSIKSAGH--FSAALLSNGKLYTFGVNTQGQLGIRENL 333
EG+ V++I S + A+ GK+YT+G N +GQLG+ + +
Sbjct: 172 EGIKVRTIASGCNACHCVAITDEGKVYTWGRNEKGQLGLSDTV 44
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00713470__112.m00142Mitochondrial_carrier_protein
(304 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07963 79 2e-15
06435 78 4e-15
18977 73 2e-13
11720 57 6e-09
03275 56 1e-08
06258 56 2e-08
33703 56 2e-08
05312 39 7e-08
00831 54 7e-08
17936 51 6e-07
02771 50 1e-06
10615 49 2e-06
03571 47 7e-06
21153 46 2e-05
00983 45 5e-05
03676 42 3e-04
36831 41 7e-04
11735 40 0.001
23802 38 0.005
13320 36 0.019
13140 35 0.031
13322 34 0.071
17476 32 0.29
11205 32 0.37
18662 32 0.39
31492 28 5.3
>07963
Length = 1390
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 116/305 (38%), Gaps = 12/305 (3%)
Frame = -1
Query: 9 IKPFLFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGV 68
+K L GGI+G + + P + VK Q+Q+ + + G T P+ + GV
Sbjct: 1294 LKGILAGGITGGLEICITFPTEYVKTQLQL----DERSGVQKRYTGPWHCVTATVNEHGV 1127
Query: 69 RGLYKGLDAALLRQITYGTARLGLFRYLSDSHKAKHKRNLTFGEKALFSSFSGFVGCLVG 128
RGLY+GL L I R G F + K++L + L G G
Sbjct: 1126 RGLYRGLSVLLYGSIPKSAVRFGAFE--------EFKKHLVGADGVLDPHHRLLCGLGAG 971
Query: 129 --------NPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTIC 180
P + V+ D R + H ++++V+E+G+ +++G PTI
Sbjct: 970 VMEAIFAVTPMETVKVKFINDQTSAKPHYRGFFH---GVSQIVKEQGLHGVYQGLTPTII 800
Query: 181 RAISMNMGMLTTYDQIKEMINEYTGTKDTMSTQVTA----SACAGVVCSTLSLPFDNAKT 236
+ S + +K+ Y G M A AG + P D KT
Sbjct: 799 KQGSNQAIRFFVMETLKDW---YRGDDKEMRVPTLIVGLFGATAGAASVFGNTPVDVVKT 629
Query: 237 KLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGLPTYIFRVSPHAITALLVQDFLH 296
+LQG+ A YKN DC + EG + G + RV+ ++ D
Sbjct: 628 RLQGLDA-----HKYKNTLDCAMKIFKHEGPKAFYKGTVPRLSRVTLDVAITFMIYDNFM 464
Query: 297 HTFTK 301
H F K
Sbjct: 463 HFFNK 449
>06435
Length = 1099
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 121/270 (44%), Gaps = 11/270 (4%)
Frame = +1
Query: 16 GISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKH----EGVRGL 71
++G A +VI P+D K+ Q+ A + F+ A R + H EG L
Sbjct: 1 ALAGATAKTVIAPLDRTKINFQI-----------ANTPFSFKSALRFLYHSLRTEGFFAL 147
Query: 72 YKGLDAALLRQITYGTARLGLFR----YLSDSHKAKHKRNLTFGEKALFSSFSGFVGCLV 127
++G A + R + Y + L+ +H KH L G + L S +G
Sbjct: 148 WRGNTATMARIVPYAAIQYCAHEQYKIILNPNHXKKH---LPPGRRFLAGSMAGVTSVAF 318
Query: 128 GNPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMNM 187
P D LVR + + + Y ++ + ++ REEG+ +++RG PTI +I +
Sbjct: 319 TYPLD--LVRAR----MAVTAKDMYHNIFEVFLKIYREEGLRTVYRGFTPTILGSIPYSG 480
Query: 188 GMLTTYDQIKEMINE-YTGTKDTMSTQVTASACAGVVCSTLSLPFDNAKTKLQGMKAGPD 246
TY+ +K++ E + G + ++ ACAG++ + S P D + ++Q AG
Sbjct: 481 TSFFTYETLKKLHAEKFKGRDPSAIERLAFGACAGLLGQSASYPLDIVRRRMQ--TAGIT 654
Query: 247 GKFP-YKNIFDCMGRTVATEG-ITGLWIGL 274
G Y +I + VA EG I GL+ GL
Sbjct: 655 GHAQDYTSILGTARQVVAEEGFIQGLYKGL 744
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 1/153 (0%)
Frame = +1
Query: 151 NYKHVGDALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKEMINEYTGTKD-T 209
++K L +R EG +LWRG+ T+ R + ++Q K ++N K
Sbjct: 85 SFKSALRFLYHSLRTEGFFALWRGNTATMARIVPYAAIQYCAHEQYKIILNPNHXKKHLP 264
Query: 210 MSTQVTASACAGVVCSTLSLPFDNAKTKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITG 269
+ A + AGV + P D + ++ K Y NIF+ + EG+
Sbjct: 265 PGRRFLAGSMAGVTSVAFTYPLDLVRARM-----AVTAKDMYHNIFEVFLKIYREEGLRT 429
Query: 270 LWIGLPTYIFRVSPHAITALLVQDFLHHTFTKK 302
++ G I P++ T+ + L +K
Sbjct: 430 VYRGFTPTILGSIPYSGTSFFTYETLKKLHAEK 528
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 218 ACAGVVCSTLSLPFDNAKTKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGLPTY 277
A AG T+ P D K Q + F +K+ + ++ TEG LW G
Sbjct: 1 ALAGATAKTVIAPLDRTKINFQIA----NTPFSFKSALRFLYHSLRTEGFFALWRGNTAT 168
Query: 278 IFRVSPHA 285
+ R+ P+A
Sbjct: 169 MARIVPYA 192
>18977
Length = 497
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%)
Frame = -3
Query: 179 ICRAISMNMGMLTTYDQIKEMINEYTGTKDTMSTQVTASACAGVVCSTLSLPFDNAKTKL 238
+ RA+ +N L +Y Q K+++ D + AS +G++ + S+P D AKT++
Sbjct: 495 VGRAMVVNAAQLASYSQAKQLLMGTGYFHDGLFLHFVASMISGLITTAASMPVDIAKTRI 316
Query: 239 QGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGLPTYIFRVSPHAITALLVQDFLHHT 298
Q MK DGK YK D +G+ + EG LW G Y R+ PH + + + ++
Sbjct: 315 QNMKM-IDGKPEYKGALDVLGKVIRNEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNIA 139
Query: 299 FTK 301
+ K
Sbjct: 138 YRK 130
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 12 FLFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGG-PGALSTNPFQVAQRVIKHEGVRG 70
F+ ISG + T+ P+D K +IQ + + K GAL V +VI++EG
Sbjct: 390 FVASMISGLITTAASMPVDIAKTRIQNMKMIDGKPEYKGALD-----VLGKVIRNEGFFS 226
Query: 71 LYKGL 75
L+KG
Sbjct: 225 LWKGF 211
>11720
Length = 504
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Frame = +1
Query: 19 GCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVRGLYKGLDAA 78
G V+T V+ P+D VK++ QV G P + ++ + G+ GLY+G+
Sbjct: 10 GVVSTLVLHPLDLVKIRFQVNEGHGTAGRPAYRGI--VHAMRSIVANSGLXGLYQGVTPN 183
Query: 79 LLRQITYGTA-RLGLFRYLSDSHK-----AKHKRNLTFGEKALFSSFSGFVGCLVGNPAD 132
+ +G GL+ + +S K K+NL L +S +GF + NP
Sbjct: 184 V-----WGAGLSWGLYFFFYNSMKTWMQDGDGKKNLGATNHMLIASAAGFSTLALTNPIW 348
Query: 133 VSLVRC--QRDS-LLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTI 179
V+ R Q +S + R Y+ + DAL ++ + EG+ L++G IP I
Sbjct: 349 VTKTRLCLQYESEAAASKAERQYRGMADALVKIYKVEGVRGLYKGFIPGI 498
>03275
Length = 3821
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 8/190 (4%)
Frame = +1
Query: 15 GGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVRGLYKG 74
G + +A +I PI +K +++ G +G AL+ + K EG+RGLY G
Sbjct: 3175 GMTARTMAACLILPITVIKTRLES-GSFQYQGMANALTL--------IYKREGIRGLYSG 3327
Query: 75 LDAALLRQITYGTARLGLFRYLSDSHKAKHKRNLTFGEKALFSSFSGFVGCLVG------ 128
L LLR + + GL+ K ++ ++ FG F F ++G
Sbjct: 3328 LSPTLLRDVPFS----GLYLMFYSKLKMYNQPSM-FG--CGFEPLVDFCNAVIGGALASF 3486
Query: 129 --NPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMN 186
PADV Q L P R ++H+ + + ++ G+ WRG +P R +M
Sbjct: 3487 VTQPADVIKTNMQ---LYP----RQHRHLKQVIVYVYQKRGMYGFWRGMVPRTLRRTTMT 3645
Query: 187 MGMLTTYDQI 196
T +++I
Sbjct: 3646 ALAWTVFEEI 3675
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Frame = +1
Query: 151 NYKHVGDALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKEMINEYT--GTKD 208
Y+ + +ALT + + EGI L+ G PT+ R + + L Y ++K M N+ + G
Sbjct: 3256 QYQGMANALTLIYKREGIRGLYSGLSPTLLRDVPFSGLYLMFYSKLK-MYNQPSMFGCGF 3432
Query: 209 TMSTQVTASACAGVVCSTLSLPFDNAKTKLQGMKAGPDGKFP--YKNIFDCMGRTVATEG 266
+ G + S ++ P D KT +Q +P ++++ + G
Sbjct: 3433 EPLVDFCNAVIGGALASFVTQPADVIKTNMQ--------LYPRQHRHLKQVIVYVYQKRG 3588
Query: 267 ITGLWIGL 274
+ G W G+
Sbjct: 3589 MYGFWRGM 3612
>06258
Length = 1005
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%)
Frame = +1
Query: 162 MVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKEMINEYTGTKDTMSTQVTASACAG 221
++++ G L++G+ + R + + Y K+ + G ++ T + ++ AG
Sbjct: 37 VIKDLGFFGLYKGARACLLRDVPFSAIYFPAYAHNKKYFADENGY-NSPGTLLLSATIAG 213
Query: 222 VVCSTLSLPFDNAKTKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGLPTYIFRV 281
+ + P D KT+LQ A G+ YK I DC + EG+ W G +FR
Sbjct: 214 MPAAFFPTPADVIKTRLQ--VAERAGQTTYKGIMDCCRKITQEEGLAAFWKGSAARVFRS 387
Query: 282 SPHAITALLVQDFLHHTF 299
SP LL + L F
Sbjct: 388 SPQFGVTLLTYELLQRLF 441
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +1
Query: 59 AQRVIKHEGVRGLYKGLDAALLRQITYGTARLGLF----RYLSDSHKAKHKRNLTFGEKA 114
A VIK G GLYKG A LLR + + + +Y +D + L
Sbjct: 28 AINVIKDLGFFGLYKGARACLLRDVPFSAIYFPAYAHNKKYFADENGYNSPGTLL----- 192
Query: 115 LFSSFSGFVGCLVGNPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRG 174
L ++ +G PADV R Q + + YK + D ++ +EEG+ + W+G
Sbjct: 193 LSATIAGMPAAFFPTPADVIKTRLQ---VAERAGQTTYKGIMDCCRKITQEEGLAAFWKG 363
Query: 175 SIPTICRAISMNMGMLTTYDQIKEMI 200
S + R+ L TY+ ++ +
Sbjct: 364 SAARVFRSSPQFGVTLLTYELLQRLF 441
>33703
Length = 421
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = -2
Query: 190 LTTYDQIKEMINEYTGTKDTMSTQVTASACAGVVCSTLSLPFDNAKTKLQGMKAGPDGK- 248
L TYD K MI T +D T AS C+G+V + + P D KT++ + DGK
Sbjct: 420 LATYDTTKHMILRNTTLQDNYVTHTLASICSGLVAALMGTPADVVKTRIMN-QPTKDGKG 244
Query: 249 FPYKNIFDCMGRTVATEGITGLWIGLPTYIFRVSPHAI 286
Y DC+ +TV EG L+ GL R++P ++
Sbjct: 243 LQYSGSVDCLVKTVKKEGFLALYKGLLPIWARMAPWSL 130
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Frame = -2
Query: 98 DSHKAKHKRNLTFGEK----ALFSSFSGFVGCLVGNPADVSLVRCQRDSLLPPEQRRNYK 153
D+ K RN T + L S SG V L+G PADV R P + + +
Sbjct: 408 DTTKHMILRNTTLQDNYVTHTLASICSGLVAALMGTPADVVKTRIMNQ---PTKDGKGLQ 238
Query: 154 HVG--DALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKEM 199
+ G D L + V++EG L+L++G +P R ++ +Y++++++
Sbjct: 237 YSGSVDCLVKTVKKEGFLALYKGLLPIWARMAPWSLVFWLSYEEVRKL 94
>05312
Length = 1032
Score = 38.5 bits (88), Expect(2) = 7e-08, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Frame = -2
Query: 57 QVAQRVIKHEGVRGLYKGLDAALLRQITYGTARLGLFRYLSDSHKAKHKRNLTFGEKALF 116
++ Q+ K G GLY+GL L I AR G F +L S L+ K L
Sbjct: 938 RLCQKDDKERGFFGLYRGLSVLLYGSIPKSAARFGAFEFLR-SKAVGPSGQLSNSGKLLC 762
Query: 117 SSFSGFVGCLVG-NPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGS 175
+G +V P + V+ D + + + H + +V+ EGI +++G
Sbjct: 761 GLGAGICEAIVAVTPMETIKVKFINDQRSANPKFKGFAH---GVKEIVKAEGISGIYKGL 591
Query: 176 IPTICR 181
PTI +
Sbjct: 590 TPTIMK 573
Score = 35.0 bits (79), Expect(2) = 7e-08, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = -3
Query: 218 ACAGVVCSTLSLPFDNAKTKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGLPTY 277
A AG + P D KT++QG++A YKN DC + + EG+ + G
Sbjct: 463 AIAGAASVFGNTPLDVVKTRMQGLEAAR-----YKNTADCAMQILKNEGLPAFYKGTVPR 299
Query: 278 IFRVSPHAITALLVQDFLHHTFT 300
+ RV ++ D F
Sbjct: 298 LGRVCLDVAITFMIYDSFMDLFN 230
Score = 33.9 bits (76), Expect(2) = 2e-05, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%)
Frame = -3
Query: 101 KAKHKRNLTFGEKALFSSFSGFVGCLVGNPADVSLVRCQRDSLLPPEQRRNYKHVGDALT 160
+ KH + G LF + +G P DV R Q + YK+ D
Sbjct: 505 RNKHVPKVVVG---LFGAIAGAASVFGNTPLDVVKTRMQ------GLEAARYKNTADCAM 353
Query: 161 RMVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKEMIN 201
++++ EG+ + ++G++P + R YD ++ N
Sbjct: 352 QILKNEGLPAFYKGTVPRLGRVCLDVAITFMIYDSFMDLFN 230
Score = 31.6 bits (70), Expect(2) = 2e-05, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -2
Query: 20 CVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNP-----FQVAQRVIKHEGVRGLYKG 74
C A + P++T+KV+ I + S NP + ++K EG+ G+YKG
Sbjct: 743 CEAIVAVTPMETIKVKF--INDQR--------SANPKFKGFAHGVKEIVKAEGISGIYKG 594
Query: 75 LDAALLRQ 82
L +++Q
Sbjct: 593 LTPTIMKQ 570
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -3
Query: 13 LFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVRGLY 72
LFG I+G + P+D VK ++Q G A N A +++K+EG+ Y
Sbjct: 472 LFGAIAGAASVFGNTPLDVVKTRMQ--------GLEAARYKNTADCAMQILKNEGLPAFY 317
Query: 73 KG 74
KG
Sbjct: 316 KG 311
>00831
Length = 2468
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%)
Frame = -2
Query: 167 GILSLWRGSIPTICRAISMNMGMLTTYDQIKEMINEYTGTKDTMSTQVTASACAGVVCST 226
G ++ G+ RA+ + +G L YDQIK ++ + +D + +T S AG + +
Sbjct: 2455 GTHKVFNGATMASSRAVLVTIGQLACYDQIKALVLKTGILEDNIVLHLTCSTMAGTIATF 2276
Query: 227 LSLPFDNAKTKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGLPTYIFRVSPHAI 286
L++P D KT++ M A P Y ++ C +A G G + G R+ PH +
Sbjct: 2275 LTMPLDVMKTRM--MNAAPG---TYTSLMHC-AMDIAKNGPMGFFKGFIPAFVRLGPHTV 2114
Query: 287 TALLVQDFLHHTF 299
+ + + F
Sbjct: 2113 LTFVFFEQIRQNF 2075
>17936
Length = 447
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -1
Query: 230 PFDNAKTKLQGMKAGPD-GKFPYKNIFDCMGRTVATEGITGLWIGLPTYIFRVSPHAITA 288
P D KT++Q + G G+ YKN FDC + + EG+ GL+ GL + V+P
Sbjct: 243 PIDLVKTRMQNQRTGSYVGELMYKNSFDCFKKVIRHEGVRGLYRGLAPQLVGVAPEKAIK 64
Query: 289 LLVQDFLHHTFTKK 302
L + D + +K
Sbjct: 63 LTMNDLMRDKLVRK 22
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = -1
Query: 26 IQPIDTVKVQIQVIGETNAKGGPGA---LSTNPFQVAQRVIKHEGVRGLYKGLDAALL 80
+ PID VK ++Q N + G + N F ++VI+HEGVRGLY+GL L+
Sbjct: 249 VYPIDLVKTRMQ-----NQRTGSYVGELMYKNSFDCFKKVIRHEGVRGLYRGLAPQLV 91
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 152 YKHVGDALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKEMINEYTGT 206
YK+ D +++R EG+ L+RG P + LT D +++ + GT
Sbjct: 177 YKNSFDCFKKVIRHEGVRGLYRGLAPQLVGVAPEKAIKLTMNDLMRDKLVRKDGT 13
>02771
Length = 1591
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 2/196 (1%)
Frame = -1
Query: 10 KPFLFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVR 69
K GG++G ++ + +D + ++ ++ KGG V + +K +G+
Sbjct: 1123 KNIFSGGVAGALSLCFVYSLDYARTRLANDAKSAGKGGGERQFNGLIDVYTKTLKSDGIV 944
Query: 70 GLYKGLDAALLRQITYGTARLGLFRYLSDSHKAKHKRNLTFGEKA-LFSSFS-GFVGCLV 127
GLY+G + + + Y GL+ DS K + G+ A +F SF G+ +
Sbjct: 943 GLYRGFVISCVGIVVYRGFYFGLY----DSLKP-----IMLGDDANVFMSFCLGYAVTVS 791
Query: 128 GNPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMNM 187
+ +R ++ Q YK D ++++ EG +S+ +G+ I R ++
Sbjct: 790 SGLLSYPIDTIRRRMMMTSGQAVKYKGSMDCAMQIIKNEGFMSMMKGAGANILRGVA-GA 614
Query: 188 GMLTTYDQIKEMINEY 203
G+L +D K + ++
Sbjct: 613 GVLAGFDSFKAVYVQW 566
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Frame = -1
Query: 135 LVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYD 194
LV+ Q + + YK V D R R EG+L WRG++ R D
Sbjct: 1360 LVQNQDEMIKAGRLSEPYKGVIDCTVRTFRTEGVLPFWRGNLANCLRYFPTQALNFAFKD 1181
Query: 195 QIKEMINEYTGTKDTMSTQVTASACAGVVCSTLSLPF----DNAKTKL--QGMKAGP-DG 247
++K M G ++ + + + +G V LSL F D A+T+L AG G
Sbjct: 1180 KVKAMFKSSPG--ESYVAKFSKNIFSGGVAGALSLCFVYSLDYARTRLANDAKSAGKGGG 1007
Query: 248 KFPYKNIFDCMGRTVATEGITGLWIGL 274
+ + + D +T+ ++GI GL+ G
Sbjct: 1006 ERQFNGLIDVYTKTLKSDGIVGLYRGF 926
>10615
Length = 1795
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Frame = +3
Query: 135 LVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYD 194
LV+ Q + + YK V D R R EGIL WRG++ R D
Sbjct: 303 LVQNQDEMIKAGRLSEPYKGVIDCTVRTFRTEGILPFWRGNLANCLRYFPTQALNFAFKD 482
Query: 195 QIKEMINEYTGTKDTMSTQVTASACAGVVCSTLSLPF----DNAKTKL--QGMKAGP-DG 247
++K M G ++ + + + +G V LSL F D A+T+L AG G
Sbjct: 483 KVKAMFKTSPG--ESYVVKFSKNIFSGGVAGALSLCFVYSLDYARTRLANDAKSAGKGGG 656
Query: 248 KFPYKNIFDCMGRTVATEGITGLWIGL 274
+ + + D +T+ ++G GL+ G
Sbjct: 657 ERQFNGLIDVYTKTLKSDGFVGLYRGF 737
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 2/190 (1%)
Frame = +3
Query: 10 KPFLFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVR 69
K GG++G ++ + +D + ++ ++ KGG V + +K +G
Sbjct: 540 KNIFSGGVAGALSLCFVYSLDYARTRLANDAKSAGKGGGERQFNGLIDVYTKTLKSDGFV 719
Query: 70 GLYKGLDAALLRQITYGTARLGLFRYLSDSHKAKHKRNLTFGEKA-LFSSFS-GFVGCLV 127
GLY+G + + + Y GL+ DS K + G+ A +F SF G+ +
Sbjct: 720 GLYRGFVISCVGIVVYRGFYFGLY----DSLKP-----IMLGDDANVFMSFCLGYAVTVS 872
Query: 128 GNPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMNM 187
+ +R ++ Q YK D ++++ EG +S+ +G+ I R ++
Sbjct: 873 SGLLSYPIDTIRRRMMMTSGQAVKYKGSMDCAMQIIKNEGFMSMMKGAGANILRGVA-GA 1049
Query: 188 GMLTTYDQIK 197
G+L +D K
Sbjct: 1050GVLAGFDSFK 1079
>03571
Length = 1155
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 5/180 (2%)
Frame = +3
Query: 28 PIDTVKVQIQVIGETNAKGGPGALSTN----PFQVAQRVIKHEGVRGLYKGLDAALLRQI 83
PID VKV +Q E G + P + + + + G RG+++G L R
Sbjct: 330 PIDVVKVTLQSQIEHEICPTTGVHQSTFYKGPLEATKEIFRTCGARGMFRGFWTQLARDS 509
Query: 84 TYGTARLGLFRYLSDSHKAKHKRNLTFGEKALFSS-FSGFVGCLVGNPADVSLVRCQRDS 142
+ + +S +++ ++ S +G + ++ P DV R Q D+
Sbjct: 510 PANAVYMSFYE-VSAYEGSEYLPSVPSPVINFVSGGMAGVISWMLIMPFDVVKSRIQADT 686
Query: 143 LLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKEMINE 202
+++Y D + R+EG +RGS+ RA +N L Y ++ +N+
Sbjct: 687 -----SKKHYSGFWDCTKKAYRQEGWTVFYRGSLAVCLRAFPVNAVTLMVYTEVLIALNK 851
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 7/181 (3%)
Frame = +3
Query: 122 FVGCLVGNPADVSLVRCQ---RDSLLPP---EQRRNYKHVGDALTRMVREEGILSLWRGS 175
F ++ P DV V Q + P Q YK +A + R G ++RG
Sbjct: 306 FPTLMLATPIDVVKVTLQSQIEHEICPTTGVHQSTFYKGPLEATKEIFRTCGARGMFRGF 485
Query: 176 IPTICRAISMNMGMLTTYDQIKEMINEYTGTKDTMSTQVTASACAGVVCSTLSLPFDNAK 235
+ R N ++ Y+ +EY + + + AGV+ L +PFD K
Sbjct: 486 WTQLARDSPANAVYMSFYEVSAYEGSEYLPSVPSPVINFVSGGMAGVISWMLIMPFDVVK 665
Query: 236 TKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGLPTYIFRVSP-HAITALLVQDF 294
+++Q K Y +DC + EG T + G R P +A+T ++ +
Sbjct: 666 SRIQ----ADTSKKHYSGFWDCTKKAYRQEGWTVFYRGSLAVCLRAFPVNAVTLMVYTEV 833
Query: 295 L 295
L
Sbjct: 834 L 836
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = +3
Query: 12 FLFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVRGL 71
F+ GG++G ++ +I P D VK +IQ +T+ K G + ++ + EG
Sbjct: 600 FVSGGMAGVISWMLIMPFDVVKSRIQ--ADTSKKHYSGF-----WDCTKKAYRQEGWTVF 758
Query: 72 YKGLDAALLRQITYGTARLGLF 93
Y+G A LR L ++
Sbjct: 759 YRGSLAVCLRAFPVNAVTLMVY 824
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 15 GGISGCVATSVIQPIDTVKVQIQVIGETNAKGG 47
G I GC +V P+DTVKVQ+Q NA G
Sbjct: 2 GAIGGCAGMAVGHPLDTVKVQMQTQSPNNAYKG 100
>21153
Length = 564
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Frame = +1
Query: 164 REEGILSLWRGSIPTICRAI---SMNMGMLTTYDQI-KEMINEYTGTKDTMSTQVTASAC 219
+E+G +S WRG++ + R ++N Y +I + +++ T + + +
Sbjct: 13 KEQGFVSFWRGNLANVIRYFPTQALNFAFKDKYKKIFLDNVDKKTQFWRYFAGNLASGGA 192
Query: 220 AGVVCSTLSLPFDNAKTKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGL 274
AG P D A+T+L + +K + DC+ + ++GI GL+ G
Sbjct: 193 AGATSLCFVYPLDFARTRLAADVGKGANEREFKGLGDCLVKISKSDGIKGLYQGF 357
>00983
Length = 819
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Frame = -2
Query: 152 YKHVGDALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKEMINEYTGTKDTMS 211
Y+ ++++++E+G+ +++G PTI + S + +KE K +
Sbjct: 809 YRGFAHGISQIIKEQGLHGVYQGVAPTIMKQGSNQAIRFFVMETMKEWYRGDDKNKKVPT 630
Query: 212 TQVTASACAGVVCSTL-SLPFDNAKTKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGL 270
A S + P D KT+LQG+ A YK DC + + EG
Sbjct: 629 LLTGAFGATAGAASVFGNTPIDVVKTRLQGLDA-----HKYKGTIDCAVKIMKNEGPRAF 465
Query: 271 WIGLPTYIFRVSPH-AITALLVQDFLH 296
+ G + RV+ AIT ++ +F+H
Sbjct: 464 YKGTLPRLSRVTLDVAITFMIYDNFMH 384
>03676
Length = 2457
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Frame = +2
Query: 61 RVIKHEGVRGLYKGLDAALLRQITYGTARLGLFRYLSDSHKAKHKR----NLTFGEKALF 116
++ + EGVRGLYKG +L I++G + + + + K+ L GE F
Sbjct: 794 KIFREEGVRGLYKGFVPGML-GISHGALQFMAYEEMKTLYNQYRKQPLDTKLGSGEYVTF 970
Query: 117 SSFSGFVGCLVGNPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRG-- 174
++ S + P V R Q +Q R+Y V D +++R+E ++G
Sbjct: 971 AAVSKMFSACLTYPYQVIRSRLQ-------DQHRHYNGVIDVCQQIIRKESYRGFYKGFT 1129
Query: 175 -----SIPTIC 180
P IC
Sbjct: 1130AYMLHVTPNIC 1162
>36831
Length = 671
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 8/149 (5%)
Frame = -2
Query: 61 RVIKHEGVRGLYKGLDAALLRQITYGTARLGLF----RYLSDSHKAKHKRNLTFGEKALF 116
+++ EGV YKGL +RQI Y + F L K + + T GE+ +
Sbjct: 496 KMMAQEGVSAFYKGLVPLWMRQIPYTMMKFACFERTLELLYQYVVPKPRADCTKGEQLIV 317
Query: 117 SSFSGFVG----CLVGNPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLW 172
+ +G++ +V +PAD + + + G + + ++ G LW
Sbjct: 316 TFAAGYIAGVFCAIVSHPADTVVSKLNQAK-------------GASALDVAKQLGWSGLW 176
Query: 173 RGSIPTICRAISMNMGMLTTYDQIKEMIN 201
G +P I ++ YD +K ++
Sbjct: 175 GGLVPRIVMIGTLTAAQWFIYDAVKVFLH 89
>11735
Length = 1194
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 25/180 (13%)
Frame = +2
Query: 127 VGNPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMN 186
+ NP DV +R Q + ++ + ++ EG+ LWRG PT RA +
Sbjct: 17 IANPTDVLKIRMQATG-----AQTKCDNMLCSFVKIYNTEGVAGLWRGVGPTAQRAAVVA 181
Query: 187 MGMLTTYDQIKEMINEYTGTKDTMSTQVTASACAGVVCSTLSLPFDNAKT--------KL 238
L YD K+ I DT T AS AG+ + S P D K +L
Sbjct: 182 GVELPAYDLCKKHILRSGLLGDTKETHFLASFLAGLAGAISSNPIDVVKVLAHSA*LMEL 361
Query: 239 QGMKAGPDGKFPYKNIFDCMG-----------------RTVATEGITGLWIGLPTYIFRV 281
Q +A + Y + + R +A I+G W+ LP ++ V
Sbjct: 362 QVWRAEMRKQTGYPWVLTAIETNPPQWRRPAVGTSGVLRALARAIISGSWLSLPHLLYCV 541
>23802
Length = 1077
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%)
Frame = +2
Query: 218 ACAGVVCSTLSLPFDNAKTKLQGMKAGPDGKFPYKNIFDCMGRTVATEGITGLWIGLPTY 277
A AG + P D KT+LQG+ A YKN DC + EG + G
Sbjct: 26 ATAGAASVFGNTPVDVVKTRLQGLDAHK-----YKNTLDCAMKIFKHEGPKAFYKGTVPR 190
Query: 278 IFRVSPHAITALLVQDFLHHTFTK 301
+ RV+ ++ D H F K
Sbjct: 191 LSRVTLDVAITFMIYDNFMHFFNK 262
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 13 LFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVRGLY 72
LFG +G + P+D VK ++Q + K N A ++ KHEG + Y
Sbjct: 17 LFGATAGAASVFGNTPVDVVKTRLQGLDAHKYK--------NTLDCAMKIFKHEGPKAFY 172
Query: 73 KG 74
KG
Sbjct: 173KG 178
>13320
Length = 1694
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -2
Query: 235 KTKLQGMKAGPDG--KFPYKNIFDCMGRTVATEGITGLWIGLPTYIFRVSPHAITALLVQ 292
+ KL A P G + Y + DC+ +TV TEG+ L+ G R+ P I +
Sbjct: 1636 QKKLISPTAAPSGAVQVVYSSSLDCLAQTVKTEGVMALYKGFIPNWLRLGPWNIIFFMTY 1457
Query: 293 DFLHHTF 299
+ L T+
Sbjct: 1456 EHLKKTY 1436
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 152 YKHVGDALTRMVREEGILSLWRGSIPTICRAISMNMGMLTTYDQIKE 198
Y D L + V+ EG+++L++G IP R N+ TY+ +K+
Sbjct: 1582 YSSSLDCLAQTVKTEGVMALYKGFIPNWLRLGPWNIIFFMTYEHLKK 1442
>13140
Length = 1844
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = -1
Query: 28 PIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVRGLYKGLDAALLRQI 83
P++ VKV+IQ PG ST + A R+++ EG+ G YKGL RQI
Sbjct: 1088 PMEAVKVRIQT--------QPG-WSTTLREGAPRILREEGLSGFYKGLVPLWARQI 948
>13322
Length = 1014
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = -1
Query: 2 GGDLFDVIKPFLFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQR 61
G D F+ G I+GC A+ ++ P+D VK ++Q + KG T +
Sbjct: 516 GSDKAVFYHSFISGCIAGCTASFLVNPMDVVKTRLQTL----HKGAGEQHYTGIVHCFRT 349
Query: 62 VIKHEGVRGLYKGLDA 77
V+ EG + KG A
Sbjct: 348 VMTQEGPKAFLKGQSA 301
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 251 YKNIFDCMGRTVATEGITGLWIGLPTYIFRVSPHAITALLVQDFLHH 297
YK++ DC +T EG G++ G + ++P L+ DF H
Sbjct: 1014 YKSLPDCALKTFRNEGFFGMYKGSGVNLLLITPEKAIKLVGNDFFRH 874
>17476
Length = 876
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 15 GGISGCVATSVIQPID--TVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVR 69
GG+ VAT V++P TV + ++ +A PG L NP V I+HEG+
Sbjct: 403 GGVDSJVATIVVEPTSDWTVGSAVDMVNGKHAVNNPGPLYLNPVDVG---IEHEGLN 564
>11205
Length = 883
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 1/179 (0%)
Frame = -1
Query: 127 VGNPADVSLVRCQRDSLLPPEQRRNYKHVGDALTRMVREEGILSLWRGSIPTICRAISMN 186
V NPADV R Q Y+ ++ ++++EG+ + +R + +
Sbjct: 841 VMNPADVVKQRMQVYG-------SGYRTSLQCVSSILQKEGVWAFYRSYTTQLLMNVPFQ 683
Query: 187 MGMLTTYDQIKEMINEYTGTKDTMSTQVTASACAGVVCSTLSLPFDNAKTKLQGMKAGPD 246
Y+ +++++N+ T + + A AG V +++++P D KT L +
Sbjct: 682 STQFVIYEIMQDVLNKDRAYNPV--THMCSGAVAGAVAASITMPLDVCKTLLNTQETCAR 509
Query: 247 GKFPYKN-IFDCMGRTVATEGITGLWIGLPTYIFRVSPHAITALLVQDFLHHTFTKKAH 304
Y N +F G G + GL + P + V +F T + H
Sbjct: 508 TNLTYINGMFSAFRTIYEFRGSHGFFRGLTARVVYQMPSTAISWSVYEFFKFMMTHRNH 332
>18662
Length = 551
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 28 PIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHEGVRGLYKGLDAALLRQI 83
PI +K +++ G +G AL+ + K EG+RGLY GL LLR +
Sbjct: 406 PITVIKTRLES-GSFQYQGMANALTL--------IYKREGIRGLYSGLSPTLLRDV 546
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 151 NYKHVGDALTRMVREEGILSLWRGSIPTICRAI 183
Y+ + +ALT + + EGI L+ G PT+ R +
Sbjct: 448 QYQGMANALTLIYKREGIRGLYSGLSPTLLRDV 546
>31492
Length = 448
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +2
Query: 7 DVIKPFLFGGISGCVATSVIQPIDTVKVQIQVIGETNAKGGPGALSTNPFQVAQRVIKHE 66
D+ L GGI+G V+ P+DT+K ++Q G
Sbjct: 20 DIRVALLAGGIAGTSVDVVLFPLDTIKTRLQSQQGLRGSG-------------------- 139
Query: 67 GVRGLYKGLDAALL 80
G RG+Y GL +A L
Sbjct: 140GFRGVYSGLMSAAL 181
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00406590__3713.m00146EF_hand_family_protein
(498 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00167 80 2e-15
07678 68 8e-12
26849 52 8e-07
05230 43 3e-04
17977 40 0.002
08108 38 0.009
01773 37 0.013
15966 37 0.015
26019 36 0.038
03732 36 0.045
07198 33 0.20
32088 33 0.22
18677 32 0.46
02929 32 0.83
08380 30 2.4
19912 29 4.9
06641 28 6.1
>00167
Length = 2176
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Frame = +3
Query: 39 DNSGR-LEKDEFLKLLSKLGVF-LTTQELRAVYDTYDTNRDEQISYAEFVQMIRTTISEK 96
DN R L DEF+ + + +T++EL V+ +D + + + EF+ +R ++E
Sbjct: 762 DNRDRKLSVDEFIVGCRECRIAKMTSEELNEVFRRFDKDGTGTLDFEEFLLALRPKMNEF 941
Query: 97 RLAVVKHAFQFLDRRGNGKLAIQDLVQQYRSEAHPRVRTRHKTAEQVKAEFVNAISKKSQ 156
R +VK AF +D+ G+G + DLV Y +HPR + T +QV EF++
Sbjct: 942 RRKLVKKAFAKMDKTGDGIITADDLVGTYDVRSHPRYQNGELTKKQVYQEFLDNFVVGDN 1121
Query: 157 DGQTINENEFLEYYADVNATLPKEKEEYFIDIILSTWGITSS 198
D I E+++YY+ V+A++ +++ YF ++ ++WG+ S+
Sbjct: 1122DDGVITMAEWIDYYSGVSASI--DEDVYFGLVMYNSWGVKSA 1241
>07678
Length = 958
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
Frame = +1
Query: 13 KIKFQLHAKKIDDLESLYRLMAEFDLDNSGRLEKDEFLKLLSKLGVFLTTQE---LRAVY 69
K++ A+ ++ L R D D + L+ EF K +++ G LT E ++ ++
Sbjct: 277 KLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFG--LTQFEGDVIQEMF 450
Query: 70 DTYDTNRDEQISYAEFVQMIRTTISEKRLAVVKHAFQFLDRRGNGKLAIQDLVQQYRSEA 129
+D + I + EF+ +R +S+ R +++ AFQ LD+ G+G + ++DL Y
Sbjct: 451 TCFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYNVTK 630
Query: 130 HPRVRTRHKTAEQVKAEFVNAISKKSQDGQTINENEFLEYYADVNATLPKEKEEYFIDII 189
HP+ T E++ F+++ + I + EF YY V+A++ + + YF ++
Sbjct: 631 HPKYLNGEWTEERILRIFLDSFDSPNDKDGKITKEEFFNYYVGVSASV--DNDAYFSLMM 804
Query: 190 LSTW 193
W
Sbjct: 805 KQAW 816
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 216 EKIRQKTLPGEDEG-RTVYRAFKYFDIAEKGVIDISQFKAALEKFGCV-FDDKEIHALFS 273
EK+R L G + + R FK D +D +FK + +FG F+ I +F+
Sbjct: 274 EKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQEMFT 453
Query: 274 KFDVNRSGKICYDEF 288
FD + SG I +DEF
Sbjct: 454 CFDKDZSGTIDFDEF 498
>26849
Length = 649
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Frame = +3
Query: 89 IRTTISEKRLAVVKHAFQFLDRRGNGKLAIQDLVQQYRSEAHPRVRTRHKTAEQVKAEFV 148
+R +SE RL V+ AF LD G+G++ I D + Y HP ++ + +++ EF+
Sbjct: 354 LRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEFL 533
Query: 149 -NAISKKSQDGQTINENEFLEYYADVNATLPKEKEEYF 185
N + S +N+ EF YA ++A++ + + YF
Sbjct: 534 KNFQAGVSDPDGVVNKEEFENXYASISASI--DNDTYF 641
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%)
Frame = +2
Query: 308 KLAREVPSPIINKLNADLKKQGPFAFRSLSKACQKADTFLNGSLSHDEFKWVIKEIGFSL 367
+LA + I KL +GP L++A + D + LS +EFK I ++ +
Sbjct: 89 ELANGLEKDSIYKLRLQCLSRGPTGILGLARAFRVMDKDGSKVLSLEEFKKGILDMHIDI 268
Query: 368 TKTEFDNLFKFFDKNYEGKVIYSVFIDLVRGQQSEIITQSLSQGY 412
+ + +++F FD + G + + F+ V I SQ +
Sbjct: 269 NEADIEDMFYRFDNDGNGTINMTEFLLKVASTNERIALXCHSQSF 403
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 232 VYRAFKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNRSGKICYDEF 288
+ RAF+ D V+ + +FK + ++ +I +F +FD + +G I EF
Sbjct: 173 LARAFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIEDMFYRFDNDGNGTINMTEF 343
>05230
Length = 843
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%)
Frame = -2
Query: 31 RLMAEFDLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDTNRDEQISYAEFVQM 88
+L A+FD D SG +++ ++ L +G+ +T +LRA D N+D +I+YA+F++M
Sbjct: 629 KLFAQFDTDGSGWASREDVIEGLENIGITITP-DLRAKIKAMDGNKDGKINYADFLRM 459
>17977
Length = 445
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = +3
Query: 234 RAFKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNRSGKICYDEFC 289
RAF+++D KG IDI + A KF D + +F D NR G+I Y EF
Sbjct: 231 RAFRFYDKDGKGKIDIDDLREACRKFDVPIDVWLLEQVFDYCDENRDGQIDYLEFA 398
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +3
Query: 15 KFQLHAKKIDDLESLYRLMAEFDLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDT 74
KF H+ L R +D D G+++ D+ + K V + L V+D D
Sbjct: 198 KFNYHS-----FPDLIRAFRFYDKDGKGKIDIDDLREACRKFDVPIDVWLLEQVFDYCDE 362
Query: 75 NRDEQISYAEFVQMI 89
NRD QI Y EF +
Sbjct: 363 NRDGQIDYLEFANFL 407
>08108
Length = 818
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = +2
Query: 34 AEFDLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDTNRDEQISYAEFVQMIRTTI 93
A FD D SG + E + L G +T + + YD++ + I EF +++
Sbjct: 146 AVFDTDGSGSISAGELGEALRAQGADITDDQTAELIKKYDSDSNGDIDTDEFRKLVEGES 325
Query: 94 SEKRLAVVKHAFQFLDRRGNGKLAIQDLVQ 123
RLA F+ LD G+G++ ++ +
Sbjct: 326 DVARLAQSALMFKSLDADGDGQITASEITE 415
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 235 AFKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNRSGKICYDEF 288
AF FD G I + AL G D + L K+D + +G I DEF
Sbjct: 140 AFAVFDTDGSGSISAGELGEALRAQGADITDDQTAELIKKYDSDSNGDIDTDEF 301
>01773
Length = 1950
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 13 KIKFQLHAKKIDDLESLYRLMAEF----DLDNSGRLEKDEFLKLLSKLGVFLTTQELRAV 68
+I F+ K +D + + +AE D G L++DE LL + G T ++ A+
Sbjct: 313 RITFEXFCKGLDQIVMFVQKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAI 492
Query: 69 YDTYDTNRDEQISYAEFV 86
+ D N D +I + EFV
Sbjct: 493 LKSADKNNDNKICFEEFV 546
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 236 FKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNRSGKICYDEF 288
FK D + G +D + KA L++ G F ++ A+ D N KIC++EF
Sbjct: 385 FKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEF 543
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 1/160 (0%)
Frame = +1
Query: 236 FKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNRSGK-ICYDEFCGNFAR 294
FK D G ++I + + ++ G D +I F FD R K I ++ FC +
Sbjct: 172 FKEADKNNDGYLEIKELRELFKRNGSSLSDSQIADTFVFFDGPRGDKRITFEXFCKGLDQ 351
Query: 295 LGSGNNPNVNPVFKLAREVPSPIINKLNADLKKQGPFAFRSLSKACQKADTFLNGSLSHD 354
+ V V KLA L KA K+ +G L D
Sbjct: 352 I-------VMFVQKLAE------------------------LFKAKDKSG---DGYLDRD 429
Query: 355 EFKWVIKEIGFSLTKTEFDNLFKFFDKNYEGKVIYSVFID 394
E K ++ E G T + + K DKN + K+ + F+D
Sbjct: 430 ELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFVD 549
>15966
Length = 362
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 13 KIKFQLHAKKIDDLESLYRLMAEF----DLDNSGRLEKDEFLKLLSKLGVFLTTQELRAV 68
+I F+ K +D + + +AE D G L++DE LL + G T ++ A+
Sbjct: 80 RITFEEFCKGLDQIVMFVQKLAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAI 259
Query: 69 YDTYDTNRDEQISYAEFV 86
+ D N D +I + EFV
Sbjct: 260 LKSADKNNDNKICFEEFV 313
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 236 FKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNRSGKICYDEF 288
FK D + G +D + KA L++ G F ++ A+ D N KIC++EF
Sbjct: 152 FKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEF 310
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 348 NGSLSHDEFKWVIKEIGFSLTKTEFDNLFKFFDKNYEGKVIYSVFID 394
+G L DE K ++ E G T + + K DKN + K+ + F+D
Sbjct: 176 DGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFVD 316
>26019
Length = 1561
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 35 EFDLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDTNRDEQISYAEFVQMIRT-TI 93
+ DLDNSG L DEF+ L ++ V D +DT+ + ++ + EF++ I ++
Sbjct: 122 KLDLDNSGSLSIDEFMSLPE----LQQNPLVQRVIDIFDTDGNGEVDFKEFIEGISQFSV 289
Query: 94 SEKRLAVVKHAFQFLDRRGNGKLAIQDLVQ 123
+ + ++ AF+ D +G ++ +L Q
Sbjct: 290 KGDKESKLRFAFKIYDMDKDGYISNGELFQ 379
>03732
Length = 1114
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 235 AFKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNRSGKICYDEF 288
F+ +D G ID ++ K AL FG D+ L KFD G + +D+F
Sbjct: 886 CFRSYDRDNSGSIDRNELKNALTGFGYRLSDRFFDVLVKKFDRQGKGTVAFDDF 725
>07198
Length = 1675
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%)
Frame = -3
Query: 29 LYRLMAEFDLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDTNRDEQISYAEFVQM 88
L R M + D + G + +EF+ + +++E + YD ++D +S E ++
Sbjct: 374 LERFMRQSDKNKDGTISMEEFMPEGATGDTRTSSEE---SFKNYDKDKDGSLSLEEAMEW 204
Query: 89 IRTTISEKRLAVVKHAFQFLDRRGNGKLAIQDLVQQ 124
I + E V+H F D +GKL+ +++ +
Sbjct: 203 INPSSDEHADVEVEHLFTIGDVNHDGKLSKDEILNK 96
>32088
Length = 1928
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +1
Query: 24 DDLESLYRLMAEFDLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDTNRDEQISYA 83
D L L + D DN+G + E +G+ + ELR + YD + D +++
Sbjct: 934 DQLTELRSVFDSIDDDNNGHISXGELDSAFRAVGLNIPGYELRTIMSKYDASGDGRLNMD 1113
Query: 84 EFVQMIRTTISEKRLAVVKHAFQ 106
EF + SEK + H F+
Sbjct: 1114 EFRTLY---ASEKSKRDIGHTFK 1173
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = +1
Query: 226 EDEGRTVYRAFKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNRSGKICY 285
ED+ + F D G I + +A G E+ + SK+D + G++
Sbjct: 931 EDQLTELRSVFDSIDDDNNGHISXGELDSAFRAVGLNIPGYELRTIMSKYDASGDGRLNM 1110
Query: 286 DEF 288
DEF
Sbjct: 1111DEF 1119
>18677
Length = 754
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +2
Query: 8 ENIQNKIKFQLHAKKIDDLESLYRLMAEFDLDNSGRLEKDEFLKLLSKLGVFLTTQELRA 67
EN +++F + ++++ + +FD + SG ++ E + SKLG +T L +
Sbjct: 449 ENRSGRLEFPEAKRLWKEIKAYREVFLQFDKNRSGLVDTYELGNMFSKLGFPVTRPVLTS 628
Query: 68 VYDTYDTNRDEQISYAEFVQMI 89
+ Y R+ QIS +FV +I
Sbjct: 629 IVRRYGDRRN-QISLEDFVVVI 691
>02929
Length = 1353
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%)
Frame = +2
Query: 341 QKADTFLNGSLSHDEFKWVIKEIGFSLTKTEFDNLFKFFDKNYEGKVIYSVFIDLVRGQQ 400
++ D +G L+ +EF + + F +TE + +F FD+ G + Y F+D ++ +
Sbjct: 197 RRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIFDREKRGLIEYKDFVDALKPDK 376
Query: 401 SEIITQSLS 409
++++S
Sbjct: 377 FRTSSRAMS 403
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 37 DLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDTNRDEQISYAEFVQMIR 90
D D G L ++EF+ + + EL AV+D +D + I Y +FV ++
Sbjct: 206 DKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIFDREKRGLIEYKDFVDALK 367
>08380
Length = 1236
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -1
Query: 36 FDLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDTNRDEQISYAEFVQMIRTTISE 95
DLD+ G++ KDE K + E +++ D ++D IS AE ++ IS
Sbjct: 318 IDLDHDGKVTKDEIKKYMDPRNPLQALLEAKSLVSYMDDDKDGMISQAEVMRHKDIFISS 139
Query: 96 KRL 98
K +
Sbjct: 138 KVM 130
>19912
Length = 865
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +2
Query: 35 EFDLDNSGRLEKDEFLKLLSKLGVFLTTQELRAVYDTYDTNRDEQISYAEFV 86
+FD + + + +D+F + L++ + L E+ + D D + D +I+Y+E V
Sbjct: 692 KFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLDELDRDGDGEINYSELV 847
>06641
Length = 726
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 227 DEGRTVYRAFKYFDIAEKGVIDISQFKAALEKFGCVFDDKEIHALFSKFDVNR-SGKICY 285
D + + AF FD +D+ + + GC + E+H + ++ + +G I +
Sbjct: 184 DTQKKITDAFDIFDHEANKTVDVREVGTIIRSLGCCPSEAELHDMLAEIEEEEPTGYIRF 363
Query: 286 DEF 288
++F
Sbjct: 364 EKF 372
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00529770__3684.m00031hypothetical_protein
(172 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
15210 77 3e-15
08240 29 1.1
04927 27 3.9
05242 27 5.6
27517 27 5.7
>15210
Length = 729
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%)
Frame = +3
Query: 31 EIFNTLNDQGTEKAPVSSENMIINELIREYMEFNNYNHALSVFIPETGQPQQPPFDRNFI 90
E+++ ++ + VS+EN++INELIREY+EFN Y + SV E+G ++ P DR F+
Sbjct: 3 EVYSAIDRPADNRPVVSNENILINELIREYLEFNKYQYTSSVLQAESGMAKE-PLDREFL 179
Query: 91 AKKLKIIEDKNTRDLPLLYGIVYGVKKMVTKDLVQESQNNTVSQKLGKTQFADDLNDND 149
+L ++ED +R +PLLY IV Q+ T Q+ +T F + + +D
Sbjct: 180 RTELNVVEDAPSRSVPLLYSIV--------SHYTQKGPAVTXQQRKPRTAFLEQIVKDD 332
>08240
Length = 1246
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -1
Query: 80 PQQPPFDRNFIAKKLKIIEDKNTRDLPLLYGIVYGVKKMVTKDL 123
PQ PP D + K ++ LPLLY Y + V L
Sbjct: 574 PQSPPKDCQCLGLKFHLLLKNPCHSLPLLYPFSYQLSHFVLVSL 443
>04927
Length = 2678
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = -3
Query: 63 FNNYNHALSVFIPETGQPQQPPFDRNFIAKKLKIIEDKNTRDLPLLYGIVYGVKKMVTKD 122
+N Y FIPE +PQ P N + L + DK + L+ +K MVTK
Sbjct: 1707 WNRYVQ----FIPEAARPQDP---LNRMVVLLSTLTDK----MGELFSSSAAMKSMVTKQ 1561
Query: 123 LVQESQ 128
L Q
Sbjct: 1560 LSHRXQ 1543
>05242
Length = 835
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 4 VNELKDVLKETLEEKGVLTK 23
V E+ D+L+ET ++ G LTK
Sbjct: 777 VREMADILQETCKDSGCLTK 718
>27517
Length = 1255
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 101 NTRDLPLLYGIVYGVKKMVTKDLVQESQNNTVSQKLGKTQF 141
+T D P YG+ +G+K+ + L + +S LGK F
Sbjct: 1069 STADWPSGYGVGFGIKRFRIRILT----GSVISYTLGKRYF 959
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00499540__3716.m00029Glutathione_S-transferase,
_C-terminal_domain_containing_protein
(236 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
20209 75 2e-14
08076 61 4e-10
27390 30 1.00
32353 29 1.3
14353 27 5.5
04908 27 6.2
>20209
Length = 979
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Frame = -1
Query: 37 VRIKKLENRTPEYKKMFPTAKLPGMSETLENGEQFNLFESHAIMRYLADRYNKSNLYPRG 96
V ++K E+ + ++ K+ P +P + N + F L ES AI+ Y+A + ++ +
Sbjct: 976 VALRKGEHYSEDFVKVHPFRLVPAL-----NDDGFRLTESIAIVDYIAKTRDVADHWLPA 812
Query: 97 NIQLKAKVDSYLDWHHTNTRKCAPYLFDQ-YFAPVLGIKP--QFDVNTLFKEVESVFRFI 153
+ + +AKV+ YL WHH NTR + LF P + +P Q V T K V++ + I
Sbjct: 811 DPKKRAKVNEYLHWHHANTRLSSAMLFQHLLLIPRMKGEPVDQKQVKTFTKRVQTAIKGI 632
Query: 154 ERVWLDQGKNKYIGNNQQLTIADLSCYSEIIQM-KFDDYDFKNKTPILYEWMQRI--EAL 210
E +L K+ ++ +T+AD+ E++Q+ + +P++ W++R+ E
Sbjct: 631 ENYFL---KDTPFISSDVITVADIFAVCELMQLYAVRQEELYESSPVVKAWVERVKKEIG 461
Query: 211 PEIQKTHQVLFKL 223
P K HQV++++
Sbjct: 460 PLFDKAHQVVYRV 422
>08076
Length = 914
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Frame = -2
Query: 101 KAKVDSYLDWHHTNTRKCAPYLFDQ-YFAPVLGIKP--QFDVNTLFKEVESVFRFIERVW 157
+AKVD YL WHH NTR + LF P + +P Q V T K V++ + IE +
Sbjct: 892 RAKVDEYLHWHHANTRLSSAMLFQHLLLIPRMKGEPVDQKQVKTFTKRVQTAIKGIENYF 713
Query: 158 LDQGKNKYIGNNQQLTIADLSCYSEIIQM-KFDDYDFKNKTPILYEWMQRI--EALPEIQ 214
L +I +N +T+AD+ E++Q+ + +P++ W++R+ E P
Sbjct: 712 LKD--TPFISSN-VITVADIFAVCELMQLYAVRQEELYESSPVVKAWVERVKKEIGPLFD 542
Query: 215 KTHQVLFKL 223
K HQV++++
Sbjct: 541 KAHQVVYRV 515
>27390
Length = 703
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -3
Query: 96 GNIQLKAKVDSYLDWHHTNTRKCAPYLFDQYFAP----VLGIKPQFDVNTLFKEVESV 149
GN L +K S L W N R Y F ++ A VLG+ P++ + + SV
Sbjct: 395 GNSCLSSKKLSPLPWSIKNCRGGPLYFFSRHVAS*SSHVLGLSPKYPLKAFLPQGHSV 222
>32353
Length = 1615
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 8/30 (26%), Positives = 21/30 (70%)
Frame = +1
Query: 172 LTIADLSCYSEIIQMKFDDYDFKNKTPILY 201
+ +A+ +C++ + + F D+++KN+ IL+
Sbjct: 631 IHVANCNCFNRCVHLHFVDFEYKNRYVILH 720
>14353
Length = 607
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 71 FNLFESHAIMRYLADRYNKSNLYPRGNIQLK--AKVDSYLDWHHTNTRKCAPYLFDQYFA 128
+N F I +YL DR + N++P + K A + L + H+N +C Y DQ+++
Sbjct: 214 YNTFSMLRIAKYLIDRQDLVNIWPHFFLANKK*ALWEKQLHFFHSNLTQCQNYHPDQHYS 35
>04908
Length = 1856
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 181 SEIIQMKFD--DYDFKNKTPILYEWMQRIEALPEI 213
S I+++K D DY+ +NK + +++QRIE E+
Sbjct: 660 SNILEVKVDGPDYNGQNKDEAMVDFLQRIEHYREV 764
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00219350__3701.m00148EF_hand_family_protein
(472 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07678 75 5e-14
00167 56 3e-08
12671 49 7e-06
01491 39 0.004
18171 39 0.006
17977 37 0.024
04067 36 0.026
14594 34 0.14
17484 34 0.16
05237 32 0.44
15966 30 1.5
01773 30 1.6
26019 30 2.4
01019 29 3.6
10736 29 5.1
>07678
Length = 958
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 3/191 (1%)
Frame = +1
Query: 285 IETPKDIVQKLRYQISARGFFSLRGLDFIFRDMDQQKTGQLEYDDFRWGLRNFGI-QSTP 343
+ D V+KLR ARG ++GL F+ MD L++ +F+ G+ FG+ Q
Sbjct: 250 LAVATDPVEKLRLACLARGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEG 429
Query: 344 EEVKLLMEAYDKNLNGYVDYQEFIXXXXXXXXXXXXXXXXKAFEKIQQQY-GVVNLETIG 402
+ ++ + +DK+ +G +D+ EF+ +AF+K+ + GVV +E +
Sbjct: 430 DVIQEMFTCFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLK 609
Query: 403 KAYKAHKYTDVVRGQKSAKQHFDEFIKEWQI-KDLLKPISKLEFILFYQDVSALIDREEQ 461
Y K+ + G+ + ++ F+ + D I+K EF +Y VSA +D +
Sbjct: 610 GVYNVTKHPKYLNGEWTEERILRIFLDSFDSPNDKDGKITKEEFFNYYVGVSASVDNDAY 789
Query: 462 FDSLIKQTWEL 472
F ++KQ W L
Sbjct: 790 FSLMMKQAWRL 822
>00167
Length = 2176
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 3/182 (1%)
Frame = +3
Query: 292 VQKLRYQISARGFFSLRGLDFIFRDMDQQKTGQLEYDDFRWGLRNFGI-QSTPEEVKLLM 350
V++ + +G +++ + FR MD + +L D+F G R I + T EE+ +
Sbjct: 681 VERFKCYALQQGCGAIKTIGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVF 860
Query: 351 EAYDKNLNGYVDYQEFIXXXXXXXXXXXXXXXXKAFEKIQQQY-GVVNLETIGKAYKAHK 409
+DK+ G +D++EF+ KAF K+ + G++ + + Y
Sbjct: 861 RRFDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYDVRS 1040
Query: 410 YTDVVRGQKSAKQHFDEFIKEWQIKDLLKP-ISKLEFILFYQDVSALIDREEQFDSLIKQ 468
+ G+ + KQ + EF+ + + D I+ E+I +Y VSA ID + F ++
Sbjct: 1041HPRYQNGELTKKQVYQEFLDNFVVGDNDDGVITMAEWIDYYSGVSASIDEDVYFGLVMYN 1220
Query: 469 TW 470
+W
Sbjct: 1221SW 1226
>12671
Length = 807
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 1/160 (0%)
Frame = -2
Query: 314 FRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEFIXXXXXX 373
+R +D+ TG L D GL F + PE ++ + E D + +DY F+
Sbjct: 797 YRQLDKDGTGILLQHDLERGLLRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTVLGQ 618
Query: 374 XXXXXXXXXXKAFEKIQ-QQYGVVNLETIGKAYKAHKYTDVVRGQKSAKQHFDEFIKEWQ 432
KAF K+ + G ++L I K + A+ S K F+ +
Sbjct: 617 MNENRKGLVRKAFSKVDTHRQGSIHLSDIKKFFNANCPYRPSSDADSTKSALQCFLDAVR 438
Query: 433 IKDLLKPISKLEFILFYQDVSALIDREEQFDSLIKQTWEL 472
+ +S +EF +Y+ +S + ++ F ++++ TW +
Sbjct: 437 CSAKQEEVSFIEFEEYYEGLSVGLQEDQDFANILRNTWNI 318
>01491
Length = 1707
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +1
Query: 314 FRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEF 366
FR +D+ G + +D RW L++ G T +E++ ++ D + +G VDY+EF
Sbjct: 364 FRVLDKGNKGVIPVEDLRWLLKSLGDDLTEDEIEDMIVETDTDGSGTVDYEEF 522
>18171
Length = 1131
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +3
Query: 317 MDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEFI 367
+D+ +TG + R L G Q T EEV+ L++ DK G VDY+EFI
Sbjct: 192 LDKDQTGVISTALLRHVLTTLGDQLTSEEVEELIKEADKEETGQVDYKEFI 344
>17977
Length = 445
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +3
Query: 289 KDIVQKLRYQISARGFFSLRGLDFIFRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKL 348
+ +V +R Q+ + S L FR D+ G+++ DD R R F + P +V L
Sbjct: 162 RGLVAAMRQQLKKFNYHSFPDLIRAFRFYDKDGKGKIDIDDLREACRKFDV---PIDVWL 332
Query: 349 LMEAYD---KNLNGYVDYQEF 366
L + +D +N +G +DY EF
Sbjct: 333 LEQVFDYCDENRDGQIDYLEF 395
>04067
Length = 1920
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = -1
Query: 317 MDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEF 366
+D+ G + +D RW L++ G T +E++ ++ D + +G VDY+EF
Sbjct: 1917 LDKGNKGVIPVEDLRWLLKSLGDDLTEDEIEDMILETDTDGSGTVDYEEF 1768
>14594
Length = 1014
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 314 FRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEFI 367
FR D+ G + + R + N G + T EEV +++ D + +G V+Y+EF+
Sbjct: 678 FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADLDGDGMVNYEEFV 839
>17484
Length = 471
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -3
Query: 314 FRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEF 366
FR DQ G + + R + G + + +V+ ++ DK+ +G+V+Y+EF
Sbjct: 253 FRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRDVDKDGDGFVNYEEF 95
>05237
Length = 472
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 314 FRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEFI 367
FR D+ G + + R + N G + T EEV ++ D + +G V+Y+EF+
Sbjct: 45 FRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 206
>15966
Length = 362
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Frame = +2
Query: 313 IFRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEFI 367
+F+ D+ G L+ D+ + L G + T ++V ++++ DKN + + ++EF+
Sbjct: 149 LFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 313
>01773
Length = 1950
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Frame = +1
Query: 313 IFRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEFI 367
+F+ D+ G L+ D+ + L G + T ++V ++++ DKN + + ++EF+
Sbjct: 382 LFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 546
>26019
Length = 1561
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 314 FRDMDQQKTGQLEYDDFRWGLRNFGIQSTPEE-----VKLLMEAYDKNLNGYVDYQEFI 367
FR +D +G L D+F S PE V+ +++ +D + NG VD++EFI
Sbjct: 116 FRKLDLDNSGSLSIDEF---------MSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFI 265
>01019
Length = 1705
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 318 DQQKTGQLEYDDFRWGLRNFGIQSTPEEVKLLMEAYDKNLNGYVDYQEFI 367
D+ G + + R + N G + T EEV ++ D + +G V+Y+EF+
Sbjct: 49 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 198
>10736
Length = 974
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +1
Query: 346 VKLLMEAYDKNLNGYVDYQEF 366
V +++++YDKN +GYV+Y EF
Sbjct: 379 VDVVLKSYDKNEDGYVEYFEF 441
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00836690__3743.m00014Peptidase_M16_inactive_domain_containin
g_protein
(482 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
35179 74 1e-13
06854 43 3e-04
30313 33 0.22
02516 29 4.3
>35179
Length = 1860
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/429 (20%), Positives = 175/429 (40%), Gaps = 16/429 (3%)
Frame = +2
Query: 69 VTKLANGVTIITESQTFPSQVDMGILLDVGTRDETNETSGSLLSIKNTYLKTVLNTNETI 128
V+ L NG+ + TE P+ +G+ +D G+R E + +G +++ K + ++T
Sbjct: 167 VSTLENGLRVATEDSGIPT-CTVGLWIDAGSRFENEKNNGVAHFLEHMAFKGTKSRSQTD 343
Query: 129 NYGVVQQSGGSFEMEYDQETAYFKANCLAHD---ATDVFSMVADCALEPRSTVAASVGVE 185
V+ G +E + A C +D A DV S + +L + GV
Sbjct: 344 LELEVENMGAHLNAYTSREQTVYYAKCFQNDLPKAVDVLSDIIQNSLLGEQEIERERGVI 523
Query: 186 KNQNTHKLESYLKTGELFNESVFKTAYXXXXXXXXXXXXXXNVKNLSSYTLQKFQLENIT 245
+ ++E+ L+ E+ + + TA+ N+++++ L ++ +
Sbjct: 524 LRE-MQEVETNLQ--EVVFDHLHATAFQGTALGRTILGPTQNIQSINRNDLLEYIGTHYK 694
Query: 246 PNRIFVCAAGVESHQEFVDLVQTKLAQIPSAEGQKTHQREKSEYLGGEVRNLTEESNVT- 304
R+ + AAG +H E VDL + + + + G E+R + +
Sbjct: 695 GPRMVLAAAGGVNHDELVDLASKHFGSLSTGYEGEIPVLPPCRFTGSEIRVRDDSMPLAH 874
Query: 305 LALLFQSVPWSSADIVAFNVXXXXXXXXXXXXXXXXXYAYFDQA-----------EALNF 353
+A+ + W + D +A V +A A ++ N
Sbjct: 875 VAVAVEGCGWQNPDNIALMVANTLIGSWDRSYGGGANHASPLAAASAEAGLCHSFQSFNT 1054
Query: 354 HFTDSGLFGLRTSGSADRAKDILNHSIAELKAIASGVNADELLTAKAALKNSVLSALERQ 413
+TD+GL+GL + +D+L+++ AE + S V E+ AK LK ++L L+
Sbjct: 1055CYTDTGLWGLYFVSDKMQIEDMLHNAQAEWMRLCSSVTEFEVTRAKNLLKTNMLLQLDGS 1234
Query: 414 TDRLEETVKNVRTFN-KIQHTDYVKQIDSVTADQVAKAVAKVLTSNPTFVAQGSQVNALP 472
T E+ + + + +I + +I++V A V K + VA + LP
Sbjct: 1235TPIAEDVGRQMLCYGRRIPLPELEARIEAVNAKVVRDVCTKYIYDKCPAVAGVGPIEQLP 1414
Query: 473 TYDAIRNLL 481
Y+ IR+ +
Sbjct: 1415DYNRIRSAM 1441
>06854
Length = 1901
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 23/253 (9%)
Frame = -3
Query: 236 LQKFQLENITPNRIFVCAAGVESHQEFVDLVQTKLAQIPSAEGQKTHQREKSEYLGGEVR 295
L F +T R+ + G + H + V + +LA PSA +K++Y GGE+R
Sbjct: 1254 LMHFMQSYVTAGRLALVGVGAD-HDQLVAHAK-QLAPFPSA----GVASDKAKYYGGEIR 1093
Query: 296 -----NLTEES----NVTLA---LLFQSVPWSSADIVAFNVXXXXXXXXXXXXXXXXXYA 343
+LT + +LA LL +V + + F +
Sbjct: 1092 VETGGDLTYAAVGVEGPSLAGKDLLHAAVLQNVMGLGPFIKYSSGNSTSRLSQAVSQATS 913
Query: 344 YFDQAEALNFHFTDSGLFGLRTSGSADRAKDILNHSIAELKAIA-SGVNADELLTAKAAL 402
+N ++TDSGLFG A + +L + ++ A+ SGV ++ AK L
Sbjct: 912 QPFAVSCINANYTDSGLFGFFAVAQAREIEKVLRAAFSQFAAVTKSGVEEKDVARAKQQL 733
Query: 403 K----------NSVLSALERQTDRLEETVKNVRTFNKIQHTDYVKQIDSVTADQVAKAVA 452
K ++VLS L Q EE + D + +DS+TA VA
Sbjct: 732 KAQISMYREGGDAVLSDLGEQALGSEEILST---------ADLLSLVDSITATDVAHVAK 580
Query: 453 KVLTSNPTFVAQG 465
K++ P+ A G
Sbjct: 579 KLVNGKPSMSAVG 541
>30313
Length = 661
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 342 YAYFDQAEALNFHFTDSGLFGLRTSGSADRAKDILNHSIAELKAIASGVNADELLTAKAA 401
Y + A A N + DSGLF + S + +++ + EL A V DEL AK A
Sbjct: 389 YHWMFNATAYNHAYEDSGLFCIHASAHPSKLRELTEVVLRELAYTAGIVYPDELARAKTA 210
>02516
Length = 2764
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 102 ETNETSGSLLSIKNTYLKTVLNTNETINYGVVQQSGGSFEMEYDQETAYFK 152
E +++G+ L + L VL+ E + G+ Q+GG E+ + + A+F
Sbjct: 1301 EVEQSAGAALGLDTRVLCQVLHQVEVGSVGI-SQTGGDTELRHQENVAFFP 1152
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01128560__3817.m00177Plectin/S10_domain_containing_protein
(162 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08597 72 1e-13
12427 27 4.6
10533 27 5.0
16399 26 5.8
05121 26 9.7
>08597
Length = 785
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Frame = +1
Query: 4 VLKATKIRIYKQLLQDGVFVLKKDF-EGHHEETGVPNLHCYILVRSLKDRGFLEEIFNWG 62
+ K ++ IY+ L ++GV V KKDF H + VPNL + SLK RG++ E F W
Sbjct: 238 IPKKNRVTIYEYLFKEGVLVAKKDFFAPKHPDIDVPNLQVIKALTSLKSRGYVREQFAWR 417
Query: 63 FTYYYLNKEGCEYLKTKLGISADNVIPKTFKASNVNFISKEEDEEERPRRQF 114
Y+YL EG +YL+ L + A+ ++P T K ++ E RP+R +
Sbjct: 418 NFYWYLTNEGIQYLRDFLHLPAE-IVPATLKRQ-----TRPEASRPRPKRTY 555
>12427
Length = 1565
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 60 NWGFTYYYLNKEGCEYLKT 78
NWG Y+YL ++G ++L
Sbjct: 151 NWGMCYFYLIEQGSDFLAV 207
>10533
Length = 507
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 43 YILVRSLKDRGFLEEIFNWGFTYYYLNKEG 72
+I R+ + R +F + +YYL+KEG
Sbjct: 17 WIKTRTTRVRSLARSVFKYFILFYYLSKEG 106
>16399
Length = 401
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 56 EEIFNWGFTYYYLNKEGCEYLKTKLGISADNVIPKT 91
+E F Y N C Y +K G+ +D V+ KT
Sbjct: 301 QEFFXVXXNTIYFNSHCCAYFISKNGLKSDTVLTKT 194
>05121
Length = 1034
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 65 YYYLNKEGCEYLKTKL 80
YYY++ CEYLK KL
Sbjct: 946 YYYVSVSFCEYLKYKL 993
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00101290__7.m00377Cytochrome_P450_family_protein
(522 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
34507 49 2e-13
13070 72 8e-13
18721 68 1e-11
07156 63 3e-10
00116 56 4e-08
06724 55 1e-07
31910 52 5e-07
22272 30 2.3
32207 30 2.5
>34507
Length = 490
Score = 49.3 bits (116), Expect(2) = 2e-13, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 31/43 (72%)
Frame = -1
Query: 458 IPYSAGPRNCIGQHLALIEAKIMIAYILKNYVVLPNEEHQKVR 500
+P+SAGPRNCIGQ+ A+ E KIM+A + + + + +H+ +R
Sbjct: 178 VPFSAGPRNCIGQNFAMHELKIMVAKVCHRFTLTLDPDHEVLR 50
Score = 43.9 bits (102), Expect(2) = 2e-13, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = -2
Query: 366 DDLKHEDLNKLEYFNAFFKESLRVYPTAPQVIPRVSARDHMVDDFPIPKGAFVSN--LTI 423
DD+ EDLN L Y A KE++R Y T P I R S +D IP G FV+ +
Sbjct: 447 DDILWEDLNCLPYTTACIKEAMRNYATVP-FIQRQSVEPMDLDGHTIPPGTFVAVQLWCL 271
Query: 424 QYNEQKFPLLCKDIDTFNPDRFL-DKNIIQDHFSFIPYSAGP 464
+N P + + P+RFL D D F P P
Sbjct: 270 HHN----PTVWDRPHDYLPERFLGDSATNMDPFQLSPSLQAP 157
>13070
Length = 865
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Frame = +2
Query: 350 LQQKIRAEIDSVI--QTFDDLKHEDLNKLEYFNAFFKESLRVYPTAP---------QVIP 398
LQ ++R EI + + L +E +N LEY + E LR+YP P + P
Sbjct: 2 LQDRLRKEIHEALIEEGTGKLSYEKINSLEYLSMVVDEVLRLYPVLPFLDREYQSIEGTP 181
Query: 399 RVSARDHMVDDFPIPKGA--FVSNLTIQYNEQKFPLLCKDIDTFNPDRFLDKNIIQ-DHF 455
+S + + DF + G F+ IQ + + +P + + F+PDRF +N +
Sbjct: 182 DLSLKPYY--DFKLENGTPVFIPIFGIQRDPKYWP----NPNHFDPDRFSPENRKTIEPT 343
Query: 456 SFIPYSAGPRNCIGQHLALIEAKIMIAYILKNY-VVLPNEEHQKVRFN 502
S+ P+ GP NC+G + L++AK+ + +ILKNY V + ++ + ++FN
Sbjct: 344 SYQPFGLGPHNCVGSLIGLLQAKLGLVHILKNYHVRVCSQTEEGIKFN 487
>18721
Length = 457
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Frame = -1
Query: 317 EIVHQFTTFFFAGMDTTANQTGICLWVLAQHPELQQKIRAEIDSVIQ--TFDDLKHEDLN 374
EI + TF F G DTTA+ ++ LA+HP +Q + + E+D +++ DDL ED +
Sbjct: 313 EIRDEVDTFLFEGHDTTASAIAWAMYSLAEHPAIQAECQREVDRLLEGRDSDDLLWEDFS 134
Query: 375 KLEYFNAFFKESLRVYPTAPQVIPRVSARDHMVDDFPIPKGAFVS 419
KL Y KE++R++ P I R +D ++D P G+ V+
Sbjct: 133 KLPYLTMCIKEAMRLHTPVP-FIQRQLTQDTLIDGIVAPAGSVVN 2
>07156
Length = 1744
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 3/175 (1%)
Frame = -3
Query: 326 FFAGMDTTANQTGICLWVLAQHPELQQKIRAEI-DSVIQTFDDLKHEDLNKLEYFNAFFK 384
F AG DT+A L +P +Q K ++ + T + D + Y A
Sbjct: 608 FAAGTDTSATAIRWALIYFXHYPHVQDKCYQDVLQATGSTTTPPELADRADMTYLEATIN 429
Query: 385 ESLRVYPTAPQVIPRVSARDHMVDDFPIPKGAFV-SNLTIQYNEQKFPLLCKDIDTFNPD 443
E LRV P + A F IP+ A+V NL ++ P + + + F P+
Sbjct: 428 EVLRVAEVVPJGVLHAPACAVQFRGFNIPRDAYVLPNLDSVLHD---PDVWDEPEKFRPE 258
Query: 444 RFLDKNIIQDHF-SFIPYSAGPRNCIGQHLALIEAKIMIAYILKNYVVLPNEEHQ 497
RF+ ++ H +FIP+S G R C+G+ LA E + +A +++++ LP E+ Q
Sbjct: 257 RFIGEDGKLVHVDAFIPFSIGRRVCLGESLARTELFLYLATMIQHFRFLPPEDGQ 93
>00116
Length = 1031
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 3/173 (1%)
Frame = -1
Query: 328 AGMDTTANQTGICLWVLAQHPELQQKIRAEIDSVIQTFDDLKHEDLNKLEYFNAFFKESL 387
A DTT+ + +P++Q K E VI D L+Y A E L
Sbjct: 893 ARSDTTSQAMQWAMLFFLHYPQVQDKCFQEXSEVIGLDRPHSMRDKPNLKYMEATVCEVL 714
Query: 388 RVYPTAPQVIPRVSARDHMVDDFPIPKGAFV-SNLTIQYNEQKFPLLCKDIDTFNPDRFL 446
R P +A D + IP G V +++ + P + D D F P+RF+
Sbjct: 713 RKGQIIPLSFLHAAADDVRFRGYTIPAGTLVFPDISSVLQD---PDIWGDPDNFRPERFI 543
Query: 447 --DKNIIQDHFSFIPYSAGPRNCIGQHLALIEAKIMIAYILKNYVVLPNEEHQ 497
D + Q FIP+S G R C+G+ LA +E + + +++++ LP + Q
Sbjct: 542 GPDGKLTQPD-EFIPFSIGHRVCLGESLARMEQFLYLTSLVQHFRFLPEHDAQ 387
>06724
Length = 1052
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 13/303 (4%)
Frame = -3
Query: 130 WTRQRNFLSNSFHFNALKNRVPIIKEITKEFLSTLPSDGKTPITIIEELQNITSEVVIQT 189
W R LS SF LK VP+I+ + + + K+ + ++++++S +
Sbjct: 909 WKHVRKTLSPSFSSGKLKAMVPVIQRGCRNLVQRVTQISKSGEEV--DIKDLSSAFSMDI 736
Query: 190 FFGENLKGMTVNGLQPSVEISKIIGDGFSYKAN-SFAYFLKLMVFGQ--EKASRVLNTTF 246
G GM VN L E +I Y F L K + +
Sbjct: 735 TAGTGF-GMDVNCLLNPDETFGVIAKRILYPPQWRFTLLLMFPALASVLSKVGITVTSPQ 559
Query: 247 EKNFLKRVENYNQFIEGIVDKRLSELEKLTDTSKVDENFLNLYLLEYIKQQKALKENPKI 306
+ ++ ++ + + D+R + +K D + L++ ++ K +P++
Sbjct: 558 DSKYM-----FDIIRQALKDRRQNPDKKYKDHLQC--------LVDAEREDKPAPVDPEL 418
Query: 307 YADYEI----------IPKREIVHQFTTFFFAGMDTTANQTGICLWVLAQHPELQQKIRA 356
+Z + + EI F AG + TA+ L+ LA P Q ++
Sbjct: 417 DXSHZFNTKPSWSRKGLTEDEIESNSMNFLLAGYENTASGMAFLLYNLAGSPHCLQTLQR 238
Query: 357 EIDSVIQTFDDLKHEDLNKLEYFNAFFKESLRVYPTAPQVIPRVSARDHMVDDFPIPKGA 416
E+DSV+ DD+ + + + Y + ESLR++P ++ R D V +PKG
Sbjct: 237 EVDSVLGQ-DDVDYRAVTDMPYLDMCLNESLRLFPPG-FLLDRECMEDTEVKGLRVPKGM 64
Query: 417 FVS 419
++
Sbjct: 63 LIT 55
>31910
Length = 668
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Frame = -1
Query: 273 EKLTDTSKVDENFLNLYLLEYIKQQKALKENPKIYADYEI--------------IPKREI 318
E+ DT K +FL L LLE K QKA K+ ++ A+ + + E+
Sbjct: 458 ERRNDTKKY-XDFLQL-LLEAEKAQKAGKDQGEVDAEIDFSQQLNTSSQWTSKGLTNSEM 285
Query: 319 VHQFTTFFFAGMDTTANQTGICLWVLAQHPELQQKIRAEIDSVIQTFDDLKHEDLNKLEY 378
+ TF FAG T A+ + L+ LA H + +K E+D ++ +L ++ L Y
Sbjct: 284 ICNSVTFLFAGYQTVASVLSLTLFALAGHEDCLKKACEEVDENLKD-GELSYDTAMNLPY 108
Query: 379 FNAFFKESLRVYPTAPQVIPRVSARDHMVDDFPIPKG 415
N E++R+Y P ++ RV+ D + + + KG
Sbjct: 107 VNMCMLEAMRLY--FPLLLQRVAVEDVDLGGYRVTKG 3
>22272
Length = 909
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 316 REIVHQFTTFFFAGMDTTANQTGICLWVLAQHP--ELQQKIRA-EIDSVIQTFDDLKHED 372
R +VH G T + +CLWV A HP +L Q +R +ID + HE
Sbjct: 557 RVLVHDPLDIVLVG--PTQKRLAVCLWVAAHHPGYQLPQLLRTVQIDRAV------CHES 712
Query: 373 LNK 375
+N+
Sbjct: 713 VNR 721
>32207
Length = 478
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 457 FIPYSAGPRNCIGQHLALIEAKIMIAYILKNYVVLP 492
FIP+ G R C+G+ +A +E + ++ +++ + LP
Sbjct: 80 FIPFGIGRRACLGEAMARMELFLYLSSLVQRFRFLP 187
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00218940__3701.m00107Kinesin_motor_domain_containing_protein
(1125 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
34899 75 2e-13
02896 55 2e-07
33215 53 6e-07
14618 45 1e-04
11818 44 3e-04
13148 43 8e-04
17748 41 0.003
12048 35 0.12
07417 32 1.5
24095 30 4.0
23413 29 8.2
>34899
Length = 564
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 77/157 (49%)
Frame = +3
Query: 24 YGPETDVSTMFQNLFRGHITPLVMGYNITIFTFGSTGSGKSATLEGNAREAGLILQMADS 83
YGP+ ++Q + + GYN+TI FG+TGSGKS + GN +E G+ +
Sbjct: 18 YGPDAKNGQIYQEKCDSMVQRALEGYNVTIMAFGATGSGKSFLMNGNDQEIGVAPMVIQQ 197
Query: 84 LFNQLETRKHHSSKLNQGNFQNYSYGVRVRYVEIIDEEITDLLGNAGNQFSDALIVKETV 143
LF L R + S V +VEI+DE++TDLL N + + V++ V
Sbjct: 198 LFQHLRQRSNKESM------------VTASFVEILDEKMTDLL----NPHNRPMAVRQHV 329
Query: 144 WEGPTIQNATVLTVQNQSQLSQLLTEGRKRRNQTSNE 180
+G + + + + +LSQL +GR+ R + +
Sbjct: 330 IKGIFVDGLSEMVARTGEELSQLYEQGRRARRMGATD 440
>02896
Length = 2076
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Frame = +1
Query: 157 VQNQSQLSQLLTEGRKRRNQTSNEFGKLSSKATSIFTIELIQTQELVNDSAIENVTILSR 216
QN+ + LL EG R+ ++ ++SS++ IFT+ L +++ V SA V S+
Sbjct: 40 AQNEEEALNLLFEGETNRSIAAHSLNRMSSRSHCIFTVYL-ESRSRVQSSAKYTV---SK 207
Query: 217 LNFFDLPGSE-IMLDDPESIRVRQGSTLNKSIIALTTLLRDMSQNQSKDDYFLTETSTVT 275
LNF DL GSE I E V + +NKS+ L ++ ++ D+ S +T
Sbjct: 208 LNFVDLAGSERIGKSKSEGKMVTEAMYINKSLSFLEQVVIALADKNR--DHIPFRQSKLT 381
Query: 276 HMMKDALGGNSISIGI 291
H +KD++GGN ++ I
Sbjct: 382 HYLKDSIGGNCNTVLI 429
>33215
Length = 696
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 6/229 (2%)
Frame = +1
Query: 114 YVEIIDEEITDLLGNAGNQFSDALIVKETVWEGPTIQNATVLTVQNQSQLSQLLTEGRKR 173
Y+EI EEI DLL S L +K G +++ + ++ ++ ++ G +
Sbjct: 1 YLEIYQEEIRDLL---SKDQSKRLELKXRPDTGVYVKDLSSFVTKSVREIEHVMNVGNQN 171
Query: 174 RNQTSNEFGKLSSKATSIFTIELIQTQELVNDSAIENVTILSRLNFFDLPGSEIMLDDPE 233
R+ + + SS++ +IF I ++ E+ D EN + +LN DL GSE
Sbjct: 172 RSVGATNMNEHSSRSHAIFIIT-VECSEIGADG--ENHIRVGKLNMVDLAGSERQAKTGA 342
Query: 234 SI-RVRQGSTLNKSIIALTTLLRDMSQNQSKDDYFLTETSTVTHMMKDALGGNSISIGIF 292
+ R+++ + +N S+ AL+ ++ + +K + S +T +++D+LGGNS +
Sbjct: 343 TGDRLKEATKINLSLSALSNVISALV--DAKTTHIPYRDSKLTRLLQDSLGGNSKTT--- 507
Query: 293 CLKNGDPKGSSY-----TLNMMKRVSNIQNFSIVNDGKAIGLLKRYRAE 336
+ N P ++ TL R +I+N +N+ LL+ ++ E
Sbjct: 508 MVANIGPASYNFDETLTTLRYANRAKSIKNKPKINEDPKDALLREFQDE 654
>14618
Length = 724
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Frame = -2
Query: 48 GYNITIFTFGSTGSGKSATLE----GNAREAGLILQMADSLFNQLETRKHHSSKLNQGNF 103
GYN+ IF +G TGSGK+ T+E G+ G+I + +F S +
Sbjct: 396 GYNVCIFAYGQTGSGKTYTMEGGLVGDEDTKGMIPRAVSQIF----------STARELQD 247
Query: 104 QNYSYGVRVRYVEIIDEEITDLLGNAGNQFSDALIVKETVWEGPTIQNATVLTVQNQSQL 163
+ + Y +VEI +E I DLL + + I + N T + V +Q ++
Sbjct: 246 KGWQYKFTTSFVEIYNEMIGDLLSSNKXKNVKHEIRMAGRDNNVAVTNLTTVDVTSQHEI 67
Query: 164 SQLLTEGRKRR 174
++LL + + R
Sbjct: 66 AKLLRQASENR 34
>11818
Length = 657
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 9/175 (5%)
Frame = -1
Query: 61 SGKSATLEGNAREA--------GLILQMADSLFNQLETRKHHSSKLNQGNFQNYSYGVRV 112
SGK+ T+ G A G+I ++ LFN + R +Y++ V V
Sbjct: 657 SGKTYTMGGCYDAALSHDDDLVGIIPRILGDLFNGIAER------------SDYTFKVTV 514
Query: 113 RYVEIIDEEITDLLGNAGNQFSDALIVKETVWEGPTIQNATVLTVQNQSQLSQLLTEGRK 172
Y+EI +E++ DLL + L ++E + I+ + V + L++G +
Sbjct: 513 SYLEIYNEDLLDLLCLPSQR--QPLSIREEMNGEIKIKGLKEVEVGSLEDTLMCLSQGAR 340
Query: 173 RRNQTSNEFGKLSSKATSIFTIELIQT-QELVNDSAIENVTILSRLNFFDLPGSE 226
R + SS++ +IFT+ + ++ +E +ND I ++ + DL GSE
Sbjct: 339 SRTTGATAMNDTSSRSHAIFTVHIEKSKKEDMNDHCI------AKFHLVDLAGSE 193
>13148
Length = 653
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Frame = -3
Query: 54 FTFGSTGSGKSATLEG---NAREAGLILQMADSLFNQLETRKHHSSKLNQGNFQNYSYGV 110
F S K+ T+EG N G+I ++ +FN + G +N + +
Sbjct: 528 FCLWSNVQWKTHTMEGVLGNESLQGIIPRIVQDIFNYI-----------YGMDENLEFHI 382
Query: 111 RVRYVEIIDEEITDLLGNAGNQFSDALIVKETVWEGPTIQNATVLTVQNQSQLSQLLTEG 170
+V Y EI ++I DLL S V E P ++ T V + ++ +++ EG
Sbjct: 381 KVSYFEIYMDKIRDLLDVTKTNLS----VHEDKNRVPYVKGCTERFVSSPEEVMEVVDEG 214
Query: 171 RKRRNQTSNEFGKLSSKATSIFTIELIQTQELVNDSAIENV----TILSRLNFFDLPGSE 226
+ R+ + SS++ S+F I + Q ENV + +L DL GSE
Sbjct: 213 KSNRHVAVTNMNEHSSRSHSVFLIHVKQ----------ENVDSEKKLHGKLYLVDLAGSE 64
>17748
Length = 621
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Frame = -3
Query: 45 LVMGYNITIFTFGSTGSGKSATLEGNAREA---------GLILQMADSLFNQLETRKHHS 95
L GYN T+ +G TGSGK+ ++ G EA G+I ++ LFN ++ R H+
Sbjct: 376 LFKGYNATVLAYGQTGSGKTFSM-GGCYEASLKLDEEAMGIIPRIIKDLFNGIQERPDHT 200
Query: 96 SKLNQGNFQNYSYGVRVRYVEI 117
K V V Y+EI
Sbjct: 199 FK------------VTVSYLEI 170
>12048
Length = 1162
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = +1
Query: 26 PETDVSTMFQNLFRGHITPLVMGYNITIFTFGSTGSGK-------SATLEGNAREAGLIL 78
P+T+ +FQN+ + I ++ GYN T+F +G TG + S TL G+ + L L
Sbjct: 307 PKTNQDEVFQNVAKPVIDNVLQGYNGTVFAYGQTGRWQDLHHHWGSGTLHGSWTDPSLSL 486
>07417
Length = 2237
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -2
Query: 45 LVMGYNITIFTFGSTGSGKSATLEGNAREAGLILQMADSLFNQLETRKHHSSKLN 99
LV+G +T G TG S G+ R G + M +L ++ RKHHSS L+
Sbjct: 469 LVLGDRVTSLGLGLTGRAPSRRNLGSHRLPGHAVVMVGAL---IDVRKHHSSSLS 314
>24095
Length = 777
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 970 LQKTTLEYQKKIMDLKKVYFCFFQLL 995
+++ L+ Q ++DLK VY+CF+ L+
Sbjct: 661 MKQAILDLQCSVLDLKHVYWCFYNLV 738
>23413
Length = 2343
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 1039 SELAYDQTEIKQQQYINCKMEDVEDSQD 1066
S YD+ EIKQ I C+ EDVE S D
Sbjct: 2116 STTPYDEKEIKQILKIRCEEEDVEMSDD 2033
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00295340__3692.m00107polyadenylate-binding_protein_2
(609 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
17775 74 2e-13
03406 44 1e-04
26197 42 6e-04
00781 42 0.001
19868 38 0.012
02343 37 0.020
10194 37 0.022
31618 35 0.066
04988 35 0.066
23720 35 0.067
28455 35 0.12
25691 32 0.21
32386 32 0.52
38841 32 0.55
15503 32 0.64
03000 32 0.88
30917 31 1.1
16427 31 1.3
30672 31 1.7
28605 29 5.6
25431 28 9.7
>17775
Length = 1282
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Frame = -2
Query: 9 QSTLLVQLLHEGVTKELIFKEFKKFG---TIKSLKHFPKNKS---ALVEFQSPEEAKNAK 62
++L V LH VT+ ++F++F G +I+ + +S A V FQ P +A+ A
Sbjct: 1197 MASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 1018
Query: 63 QSLNHNKLLNKEINIVNYQNKDELKQKKKYNLFIHNVPQDLETNTLHNFMSKYGEITSLM 122
++N + + + I I+ Q +++ N+FI N+ + ++ L++ S +G I S
Sbjct: 1017 DTMNFDTVKGRPIRIMWSQRDPSVRKSGVGNVFIKNLDKTIDNKALYDTFSAFGNILSCK 838
Query: 123 LKKNDENKNLGYGYVQFETEEAYNEILKE---HELNGK 157
+ DE + GYG+V FETEEA + + + LNGK
Sbjct: 837 IA-CDEQGSKGYGFVHFETEEAARQAIDKVNGMLLNGK 727
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Frame = -2
Query: 48 ALVEFQSPEEAKNAKQSLNHNKLLNKEINIVNYQNKDE-------------LKQKKKY-- 92
V F+ PE A+ A +N ++ + I Q + E L++ +Y
Sbjct: 522 GFVSFEEPEGAEKAVDEINGTEVSGRIIYCGRAQKRAERQAELKERFEKIKLERINRYQG 343
Query: 93 -NLFIHNVPQDLETNTLHNFMSKYGEITSLMLKKNDENKNLGYGYVQFET-EEAYNEILK 150
NL++ N+ ++ L S +G ITS + + ++ G+G+V F + EEA +
Sbjct: 342 VNLYVKNLDDSIDDERLRKEFSNFGTITSAKI-MTEGGRSKGFGFVCFSSPEEATKAVT- 169
Query: 151 EHELNGKI 158
E+NG+I
Sbjct: 168 --EMNGRI 151
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = -2
Query: 12 LLVQLLHEGVTKELIFKEFKKFGTIKSLKHFPKNKS----ALVEFQSPEEAKNAKQSLNH 67
L V+ L + + E + KEF FGTI S K + V F SPEEA A +N
Sbjct: 336 LYVKNLDDSIDDERLRKEFSNFGTITSAKIMTEGGRSKGFGFVCFSSPEEATKAVTEMNG 157
Query: 68 NKLLNKEINIVNYQNKDELKQK--KKYNLFIHNVPQ 101
++ K + + Q K++ + + +Y + N+ Q
Sbjct: 156 RIIVAKPLYVALAQRKEDRRAQLASRYMQHMANLRQ 49
>03406
Length = 1292
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Frame = +3
Query: 94 LFIHNVPQDLETNTLHNFMSKYGEITSLMLKKN-DENKNLGYGYVQFETEEAYNEIL--K 150
+F+ + + + L + K+GE+TS LK + D K+ G+G+V F+ + ++ K
Sbjct: 246 IFVGGLSWETXSKHLREYFEKFGEVTSCTLKTDLDSGKSRGFGFVVFKEAATVDAVVKNK 425
Query: 151 EHELNGKISLPNSTISFNIQKFNDSNKNKANNIVILGLFENEIPADQKE------AKTQS 204
EH+L G+ P +N K + +G + +P + E K +
Sbjct: 426 EHKLQGRKIDPKP-----------ANPRKGMRKIFVGKLDPGVPQEDVESYFAKFGKVVN 572
Query: 205 INAIFEKIKQELNVLHF 221
+ ++K+K + F
Sbjct: 573 VELPYDKVKDQRRAFCF 623
>26197
Length = 1365
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = -2
Query: 94 LFIHNVPQDLETNTLHNFMSKYGEITSLMLKKN-DENKNLGYGYVQFETEEAYNEIL--K 150
+F+ + + + L + K+GE+TS LK + D K+ G+G+V F+ + ++ K
Sbjct: 1292 IFVGGLSWETSSKHLREYFEKFGEVTSCTLKTDLDSGKSRGFGFVVFKEAVTVDAVVKNK 1113
Query: 151 EHELNGK 157
EH+L G+
Sbjct: 1112 EHKLQGR 1092
>00781
Length = 3170
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = -1
Query: 11 TLLVQLLHEGVTKELIFKEFKKFGTIK--SLKHFPKNKS----ALVEFQSPEEAKNAKQS 64
T+ V+ H+ ++E I + F K GT+ SL F + A VEFQSPEEA A Q
Sbjct: 2717 TVYVEGFHKFTSREWISRMFSKCGTVTYVSLPCFKTTREIKGYAFVEFQSPEEAVKAVQM 2538
Query: 65 LNH 67
LN
Sbjct: 2537 LNR 2529
>19868
Length = 434
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +2
Query: 94 LFIHNVPQDLETNTLHNFMSKYGEITSLMLKKN-DENKNLGYGYVQFETEEAYNEILKE- 151
+F+ + +L ++ +K+GEIT +M+ K+ ++ G+G++ F + +++L +
Sbjct: 5 MFVGGLSWQTSPESLRDYFNKFGEITEVMVMKDPTTRRSRGFGFITFGDPASVDKVLAQA 184
Query: 152 -HELNGK 157
HEL+GK
Sbjct: 185 THELDGK 205
>02343
Length = 1715
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 6/148 (4%)
Frame = -2
Query: 8 NQSTLLVQLLHEGVTKELIFKEFKKFGTIKSLKHF---PKNKS---ALVEFQSPEEAKNA 61
+++ L ++ L T + + + FGTI S K NK V+F +P A+ A
Sbjct: 1270 SKTNLYIRGLSPNTTDKDLVNLCQHFGTITSTKAIIDQTTNKCKGYGFVDFDAPGAAERA 1091
Query: 62 KQSLNHNKLLNKEINIVNYQNKDELKQKKKYNLFIHNVPQDLETNTLHNFMSKYGEITSL 121
Q+L + + + Q +D NL+I N+P L YG + S
Sbjct: 1090 VQALQAQGI---QAQMAKQQEQDPT------NLYIANLPLHFTEKHLEGLFKDYGTVIST 938
Query: 122 MLKKNDENKNLGYGYVQFETEEAYNEIL 149
+ + + + G+ + E+ + + ++
Sbjct: 937 RILRKPDGISRCVGFARMESRDKCDTVI 854
>10194
Length = 1278
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = -3
Query: 45 NKSALVEFQSPEEAKNAKQSLNHNKLLNKEINIVNYQNKDELKQKKKYNLFIHNVPQDLE 104
N SA + F+ E AK Q+L N + +++ K LK K ++F+ N+P D+E
Sbjct: 538 NISAYICFKEDEAAK---QALTLNGHVIDGLHLRVDSAKLSLKNLDKRSVFVGNLPFDIE 368
Query: 105 TNTLHNFMSKYGEITSLMLKKNDENKNLGYG--YVQFETEEAYNEILK 150
++ + G++ ++ + + D NLG G Y+ F++ ++ + LK
Sbjct: 367 EESVRSHFEDCGDVENIRVVR-DRKTNLGKGICYILFKSADSVSLALK 227
>31618
Length = 716
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Frame = +1
Query: 94 LFIHNVPQDLETNTLHNFMSKYGEITSLMLKKNDE-NKNLGYGYVQFETEEAYNEI--LK 150
LF+ + + L + KYGEI S+ +K + + ++ G+ ++ F EA +++ +
Sbjct: 298 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDQVSAAE 477
Query: 151 EHELNGKISLPNSTISFNIQKFND--------SNKNKANNIVILGLFENEIPADQKEA 200
EH +N K P + +F K+K ++ + + E E+P D++++
Sbjct: 478 EHIINSKKVDPKKKPRLAMARFLSVA*PQRLAMRKSKPTSVNLDNIVEVEMPFDKQKS 651
>04988
Length = 705
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -3
Query: 86 LKQKKKYNLFIHNVPQDLETNTLHNFMSKYGEITSLMLKKNDENKNLGYGYVQFETEEAY 145
L + ++I +P + F YG + +MLK GYG+V+FE
Sbjct: 670 LSNRMGTRVYIGRLPYQAREKDIERFFRGYGRVNDIMLKN-------GYGFVEFEDFRDA 512
Query: 146 NEILKEHELNGK 157
++ + +ELNGK
Sbjct: 511 DDAV--YELNGK 482
>23720
Length = 739
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -1
Query: 86 LKQKKKYNLFIHNVPQDLETNTLHNFMSKYGEITSLMLKKNDENKNLGYGYVQFETEEAY 145
L + ++I +P + F YG + +MLK GYG+V+FE
Sbjct: 703 LSNRMGTRVYIGRLPYQAREKDIERFFRGYGRVNDIMLKN-------GYGFVEFEDFRDA 545
Query: 146 NEILKEHELNGK 157
++ + +ELNGK
Sbjct: 544 DDAV--YELNGK 515
>28455
Length = 573
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 91 KYNLFIHNVPQDLETNTLHNFMSKYGEITSLMLKKNDENKNLGYGYVQFETEE-AYNEIL 149
K LF+ N+P L ++G++ + L + G YV+FETEE A ++
Sbjct: 543 KNKLFVKNLPFTCSAEALETIFKEHGKVKDVRLVTYRSGASKGLAYVEFETEEMATQAVM 364
Query: 150 KEHEL 154
K L
Sbjct: 363 KTDGL 349
>25691
Length = 768
Score = 31.6 bits (70), Expect(2) = 0.21, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = -2
Query: 119 TSLMLKKNDENKNLGYGYVQFETEEAYNEILKEHELNGKISLPNSTISFNIQKFNDSNKN 178
T +++ ++LGYG+V ++ +E ++ + H LNG + L N TI ++ +
Sbjct: 434 TCKLIRDKPTGQSLGYGFVNYKRQEDADKAI--HTLNG-LRLQNKTIKVSLAR-PSCESI 267
Query: 179 KANNIVILGLFENEIPADQKEAKTQSINAIFEKI 212
K N+ I GL ++ D + T N I +I
Sbjct: 266 KGANLYISGLPKSLTQLDLENLFTDCGNIITSRI 165
Score = 20.8 bits (42), Expect(2) = 0.21, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = -1
Query: 90 KKYNLFIHNVPQDLETNTLHNFMSKYGEITSL 121
K NL ++ +PQ + + + + + GE+ L
Sbjct: 525 SKTNLIVNYLPQTMSQDEIRSLFASIGELEYL 430
>32386
Length = 674
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/67 (17%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 94 LFIHNVPQDLETNTLHNFMSKYGEIT-SLMLKKNDENKNLGYGYVQFETEEAYNEIL--K 150
LFI + + + ++L + +GEI ++++ ++ ++ G+G++ ++ E+ ++ +
Sbjct: 307 LFIGGLSYETDEDSLRSHFETWGEIVDCIVMRDSNSKRSRGFGFITYKDAESIDQAQANR 486
Query: 151 EHELNGK 157
H+++G+
Sbjct: 487 PHKIDGR 507
>38841
Length = 511
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 398 QNSTMGSNKFQTDIQAPNPIHPYGYPIPMFMPQQIPFQ-NQQPKLINIPSMQHNKKIQNT 456
Q T+ SN F + AP P YP P P+ Q P L + P+ H QN
Sbjct: 225 QTGTLPSNVFPSAPPAPGAHMPAHYPAPPQAGYPAPYSPAQAPTLPSRPTQHH----QNL 392
Query: 457 PQPI 460
QP+
Sbjct: 393 NQPV 404
>15503
Length = 570
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +1
Query: 11 TLLVQLLHEGVTKELIFKEFKKFGTIKSLK--HFPKNK-SALVEFQSPEEAKNAKQSLNH 67
L V+ L +T E ++ F K+G I+ ++ + P+ K +A V ++ +AKNA L+
Sbjct: 151 VLYVKNLPYKITAEEMYDIFGKYGAIRQIRVGNTPETKGTAFVVYEDIFDAKNACDHLSG 330
Query: 68 NKLLNKEINIVNYQNKDELKQ 88
+ N+ + ++ YQ+ K+
Sbjct: 331 FNVCNRYLVVLYYQSTRAFKK 393
>03000
Length = 778
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/67 (17%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +3
Query: 94 LFIHNVPQDLETNTLHNFMSKYGEIT-SLMLKKNDENKNLGYGYVQFETEEAYNEIL--K 150
LFI + + + ++L + +GEI ++++ ++ ++ G+G++ ++ E+ ++ +
Sbjct: 93 LFIGGLSYETDEDSLRSHFETWGEIVDCIVMRDSNSKRSRGFGFITYKDAESIDQAQANR 272
Query: 151 EHELNGK 157
H+++G+
Sbjct: 273 PHKIDGR 293
>30917
Length = 1616
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 21 VTKELIFKEFKKFGTIKSLKHFPKNK-SALVEFQSPEEAKNAKQSLN 66
+T +++ +G ++ + F KN A++EF E AK AKQSLN
Sbjct: 156 ITVDVMHTICSPYGQVQRIVIFKKNGVQAMIEFDGLESAKRAKQSLN 296
>16427
Length = 1313
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 86 LKQKKKYNLFIHNVPQDLETNTLHNFMSKYGEIT-SLMLKKNDENKNLGYGYVQFETEEA 144
++ + LF+ + ++++ L SK+G IT S++++ + G+G+V +E
Sbjct: 118 FEKDRPGKLFVGGLAEEIDEKVLEREFSKFGRITESMVIRDKVRQVSRGFGFVTYENPMD 297
Query: 145 YNEILKEHELNGK 157
E +K ++GK
Sbjct: 298 AEEAVK--HMDGK 330
>30672
Length = 877
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 93 NLFIHNVPQDLETNTLHNFMSKYGEI-TSLMLKKNDENKNLGYGYVQF 139
LF+ N+P + L + G + T+ ++ + K G+GYVQF
Sbjct: 15 TLFVRNLPFETSNEKLLEAFEQVGPLKTAFVVAGKEPGKCRGFGYVQF 158
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +3
Query: 81 QNKDELKQKKKYNLFIHNVPQDLETNTLHNFMSKYGEITSLMLKKNDENKNLGYGYVQFE 140
Q K EL K+ L I N+ + + + K+G I+ + + +++ G+ +VQF
Sbjct: 378 QPKQELG--KRCRLIIRNLAFKCKEADIRSHFGKFGTISEVTIPLKQGDRSRGFAFVQFT 551
Query: 141 TEEAYNEILKEHELNG 156
+A + + ++NG
Sbjct: 552 EVKAAQKAI--SDMNG 593
>28605
Length = 697
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 94 LFIHNVPQDLETNT-LHNFMSKYGEITSLMLKKNDENKNLGYGYVQFETEE 143
+F+ N+ D + L SKYG + ++ N YG+VQF TEE
Sbjct: 563 VFVANLSSDETSEAELQELFSKYGNVLDTLVHHNR------YGFVQFSTEE 429
>25431
Length = 1623
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 21 VTKELIFKEFKKFGTIKSLKHFPKNK-SALVEFQSPEEAKNAKQSLN 66
+T +++ +G + + F KN +VEF + E AK AKQSLN
Sbjct: 89 ITVDVMHTICSPYGQVLRIVIFKKNGVQTMVEFDNLESAKRAKQSLN 229
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00267880__3690.m00068EF_hand_family_protein
(300 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07678 72 3e-13
00167 72 4e-13
12671 52 2e-07
02929 43 2e-04
26849 37 0.007
01773 37 0.011
15966 36 0.020
14594 34 0.087
01678 33 0.21
26019 32 0.29
30885 31 0.66
28763 30 0.91
05230 30 1.4
19912 29 1.9
18822 28 4.4
>07678
Length = 958
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 4/173 (2%)
Frame = +1
Query: 27 KGGLNVRNLRRIFEQLDYQQNGQLNLDDFKAGLNKFGF--FLKNVDYQCLLKYFDVEQNG 84
+G ++ L R F+ +D N L+ +FK G+ +FG F +V Q + FD +++G
Sbjct: 301 RGAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDV-IQEMFTCFDKDZSG 477
Query: 85 NVNYLAFLSCISQTLNQRRANFVLKVFDSIDSEQKGAVHPFSLAERLEVVKNKDYQIGSK 144
+++ FL + ++Q R + + + F +D G V L V K+ Y G
Sbjct: 478 TIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYNVTKHPKYLNGEW 657
Query: 145 TREQLVGEYVAQFHK--NQDGLITRDEFVSYYEDLGLGISSDQHFIEILQTQW 195
T E+++ ++ F ++DG IT++EF +YY + + +D +F +++ W
Sbjct: 658 TEERILRIFLDSFDSPNDKDGKITKEEFFNYYVGVSASVDNDAYFSLMMKQAW 816
>00167
Length = 2176
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 3/186 (1%)
Frame = +3
Query: 19 FRLYVSKQKGGLNVRNLRRIFEQLDYQQNGQLNLDDFKAGLNKFGFF-LKNVDYQCLLKY 77
F+ Y +Q G ++ + R F +D ++ +L++D+F G + + + + + +
Sbjct: 690 FKCYALQQGCGA-IKTIGRKFRIMDDNRDRKLSVDEFIVGCRECRIAKMTSEELNEVFRR 866
Query: 78 FDVEQNGNVNYLAFLSCISQTLNQRRANFVLKVFDSIDSEQKGAVHPFSLAERLEVVKNK 137
FD + G +++ FL + +N+ R V K F +D G + L +V +
Sbjct: 867 FDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMDKTGDGIITADDLVGTYDVRSHP 1046
Query: 138 DYQIGSKTREQLVGEYVAQF--HKNQDGLITRDEFVSYYEDLGLGISSDQHFIEILQTQW 195
YQ G T++Q+ E++ F N DG+IT E++ YY + I D +F ++ W
Sbjct: 1047RYQNGELTKKQVYQEFLDNFVVGDNDDGVITMAEWIDYYSGVSASIDEDVYFGLVMYNSW 1226
Query: 196 GIKEDD 201
G+K D
Sbjct: 1227GVKSAD 1244
>12671
Length = 807
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Frame = -2
Query: 37 RIFEQLDYQQNGQLNLDDFKAGLNKFGFFLKNVDYQCLLKYFDVEQNGNVNYLAFLSCIS 96
R + QLD G L D + GL +F L + + + D + ++Y F+ +
Sbjct: 803 RHYRQLDKDGTGILLQHDLERGLLRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTVL 624
Query: 97 QTLNQRRANFVLKVFDSIDSEQKGAVHPFSLAERLEVVKNKDYQIGS-----KTREQLVG 151
+N+ R V K F +D+ ++G++H + + N Y+ S K+ Q
Sbjct: 623 GQMNENRKGLVRKAFSKVDTHRQGSIHLSDIKKFFNA--NCPYRPSSDADSTKSALQCFL 450
Query: 152 EYVAQFHKNQDGLITRDEFVSYYEDLGLGISSDQHFIEILQTQWGI 197
+ V K ++ ++ EF YYE L +G+ DQ F IL+ W I
Sbjct: 449 DAVRCSAKQEE--VSFIEFEEYYEGLSVGLQEDQDFANILRNTWNI 318
>02929
Length = 1353
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +2
Query: 220 KLIQKTKGANDEFLLRKLFKEFDISNSGFLTLDEMNAMLIKLEIPIQKRYLNAVFSQLDR 279
K IQ K F + F+ D GFLT +E +++ P + LNAVF DR
Sbjct: 155 KWIQAKK-----FRVTDFFRRQDKDGDGFLTEEEFVNGMMQSRFPTNRTELNAVFDIFDR 319
Query: 280 NHSGVIEFEEFVYYIVNDPY 299
G+IE+++FV + D +
Sbjct: 320 EKRGLIEYKDFVDALKPDKF 379
>26849
Length = 649
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +3
Query: 99 LNQRRANFVLKVFDSIDSEQKGAVHPFSLAERLEVVKNKDYQIGSKTREQLVGEYVAQFH 158
+++ R N + + FD +D+ G + V + Y+ G + ++++ E++ F
Sbjct: 366 MSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEFLKNFQ 545
Query: 159 ---KNQDGLITRDEFVSYYEDLGLGISSDQHF 187
+ DG++ ++EF + Y + I +D +F
Sbjct: 546 AGVSDPDGVVNKEEFENXYASISASIDNDTYF 641
>01773
Length = 1950
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 234 LRKLFKEFDISNSGFLTLDEMNAMLIKLEIPIQKRYLNAVFSQLDRNHSGVIEFEEFV 291
L +LFK D S G+L DE+ A+L + ++A+ D+N+ I FEEFV
Sbjct: 373 LAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 546
>15966
Length = 362
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 234 LRKLFKEFDISNSGFLTLDEMNAMLIKLEIPIQKRYLNAVFSQLDRNHSGVIEFEEFV 291
L +LFK D S G+L DE+ A+L + ++A+ D+N+ I FEEFV
Sbjct: 140 LAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFV 313
>14594
Length = 1014
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Frame = +3
Query: 32 VRNLRRIFEQLDYQQNGQLNLDDFKAGLNKFGFFLKNVDYQCLLKYFDVEQNGNVNYLAF 91
V + F D +G + + + G + Q ++ D + NG +++ F
Sbjct: 438 VAEFKEAFSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTIDFEEF 617
Query: 92 LSCISQTLNQRRANFVLK-VFDSIDSEQKGAVHPFSLAERLEVVKNKDYQIGSKTREQLV 150
L +++ + L+ F D + G + S AE V+ N +G K ++ V
Sbjct: 618 LHMMARKMKDTDCEEELREAFRVFDKDGNGYI---SAAELRHVMTN----LGEKLTDEEV 776
Query: 151 GEYVAQFHKNQDGLITRDEFVS 172
E + + + DG++ +EFV+
Sbjct: 777 DEMIKEADLDGDGMVNYEEFVT 842
>01678
Length = 2407
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 242 DISNSGFLTLDEMNAMLIKLEIPIQKRYLNAVFSQLDRNHSGVIEFEEFVYYIVNDPYP 300
D + SGF+ D + + + +P+ L A+ + N +G +EEF+ I YP
Sbjct: 1340 DRARSGFIECDVLRTVFLSHHVPLPDDMLRAMLACAPTNQNGEXAYEEFLKXINWRDYP 1516
>26019
Length = 1561
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 234 LRKLFKEFDISNSGFLTLDEMNAMLIKLEIPIQKRYLNAVFSQLDRNHSGVIEFEEFVYY 293
L K F++ D+ NSG L++DE ++ + P+ +R ++ D + +G ++F+EF+
Sbjct: 104 LGKRFRKLDLDNSGSLSIDEFMSLPELQQNPLVQRVIDI----FDTDGNGEVDFKEFIEG 271
Query: 294 I 294
I
Sbjct: 272 I 274
>30885
Length = 1090
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1
Query: 233 LLRKLFKEFDISNSGFLTLDEMNAMLIKLEIPIQKRYLNAV 273
LL+ +F++FD N+G +T + + L LEIPI L A+
Sbjct: 796 LLKPVFQDFDRHNNGHITRVQFSQGLTMLEIPISTPELAAL 674
>28763
Length = 580
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 26/117 (22%)
Frame = +3
Query: 180 GISSDQHFIE----------------ILQTQWGIKE----DDDLAITKEEVKGIVKTIRQ 219
GIS D+H +E Q Q +KE DLA E G + +RQ
Sbjct: 105 GISEDRHQLEDRLSAADAAHRLSQGQAAQLQNDLKELSSVKADLATQLSEASGKIHDLRQ 284
Query: 220 KLIQ---KTKGANDEFLL--RKLFKEFDISNSGFLTLD-EMNAMLIKLEIPIQKRYL 270
K+I+ + K A DE + ++LF+E + G+ TL E+N + ++ +Q+R L
Sbjct: 285 KVIEFQHREKAAKDETEIYKKQLFEERNGLVKGYDTLKLELNEVKVREAHTMQERKL 455
>05230
Length = 843
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 233 LLRKLFKEFDISNSGFLTLDEMNAMLIKLEIPIQKRYLNAVFSQLDRNHSGVIEFEEFV 291
+ RKLF +FD SG+ + +++ L + I I L A +D N G I + +F+
Sbjct: 638 MWRKLFAQFDTDGSGWASREDVIEGLENIGITITPD-LRAKIKAMDGNKDGKINYADFL 465
>19912
Length = 865
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 234 LRKLFKEFDISNSGFLTLDEMNAMLIKLEIPIQKRYLNAVFSQLDRNHSGVIEFEEFV 291
L F +FD + +T D+ L + IP+ ++ + +LDR+ G I + E V
Sbjct: 674 LVDFFNKFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLDELDRDGDGEINYSELV 847
>18822
Length = 474
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 242 DISNSGFLTLDEMNAMLIKL--EIPIQKRYLNAVFSQLDRNHSGVIEFEEFV 291
D+ TL+ ++KL EIP + +YL AV ++ +GV++ E ++
Sbjct: 329 DVVTVMLETLNTQKEAIVKLRREIPERIKYLKAVLPNVESLETGVLDLEAWL 174
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00773350__3676.m00029hypothetical_protein
(237 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30226 70 5e-13
>30226
Length = 551
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Frame = +2
Query: 156 KRKAALGKLVNKKTATAVALTEVRNEDKAKLQQFSELFKTNYN-ANDELRKTWGGGILGQ 214
K KA LG+LV +KT TA+ALT V N DK + E KTN+N ++E+R+ WGGGILG
Sbjct: 194 KGKARLGRLVRRKTCTALALTTVENNDKPNFXKVLEAVKTNFNDRHEEIRRHWGGGILGS 373
Query: 215 KSQHKVEALAKAVQEE 230
KS ++ L +A E
Sbjct: 374 KSLARIAKLERAKARE 421
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00155380__3829.m01136conserved_hypothetical_protein
(492 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07678 71 1e-12
26849 45 6e-09
00167 49 4e-06
12671 38 0.010
01401 29 5.2
>07678
Length = 958
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Frame = +1
Query: 307 DLLNKLRRALINKNGSNGLLFFKNELLKQDKDNSGYLPQQQFKQTVQCHGIN-FSDLDIK 365
D + KLR A + + G+ G+ + D D + L ++FK+ + G+ F I+
Sbjct: 265 DPVEKLRLACLAR-GAAGIKGLARKFKIMDDDGNRSLDFKEFKKGITEFGLTQFEGDVIQ 441
Query: 366 EVIQSF-QELDNKINYSELLIQLKGTLSEKRRNLINLAYDVLAEKLGQNVTLSGIFSAFN 424
E+ F ++ I++ E L++L+ +S+ R++LI A+ L + VT+ + +N
Sbjct: 442 EMFTCFDKDZSGTIDFDEFLVKLRPPMSQMRKDLIQRAFQKLDKTGDGVVTVEDLKGVYN 621
Query: 425 KIRHPDVVKKYGTDKEIFNNFVLSWGNLNPHIA-ISREQFESYYHDFSACVDKEDYFEVV 483
+HP + T++ I F+ S+ + N I++E+F +YY SA VD + YF ++
Sbjct: 622 VTKHPKYLNGEWTEERILRIFLDSFDSPNDKDGKITKEEFFNYYVGVSASVDNDAYFSLM 801
Query: 484 LKNSW 488
+K +W
Sbjct: 802 MKQAW 816
>26849
Length = 649
Score = 45.4 bits (106), Expect(2) = 6e-09, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +3
Query: 386 QLKGTLSEKRRNLINLAYDVLAEKLGQNVTLSGIFSAFNKIRHPDVVKKYGTDKEIFNNF 445
+L+ +SE R N+I+ A+D L +T++ ++ HP +D EI F
Sbjct: 351 KLRPPMSESRLNVIHRAFDKLDANGDGQITITDFKRCYSVRDHPLYKSGQMSDDEIILEF 530
Query: 446 VLSW--GNLNPHIAISREQFESYYHDFSACVDKEDYFEV 482
+ ++ G +P +++E+FE+ Y SA +D + YF++
Sbjct: 531 LKNFQAGVSDPDGVVNKEEFENXYASISASIDNDTYFDL 647
Score = 32.7 bits (73), Expect(2) = 6e-09, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 307 DLLNKLRRALINKNGSNGLLFFKNELLKQDKDNSGYLPQQQFKQTVQCHGINFSDLDIKE 366
D + KLR +++ G G+L DKD S L ++FK+ + I+ ++ DI++
Sbjct: 113 DSIYKLRLQCLSR-GPTGILGLARAFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIED 289
Query: 367 VIQSFQELDN-KINYSELLIQLKGT 390
+ F N IN +E L+++ T
Sbjct: 290 MFYRFDNDGNGTINMTEFLLKVAST 364
>00167
Length = 2176
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Frame = +3
Query: 352 VQCHGINFSDLDIKEVIQSFQELD----NKINYSELLIQLKGTLSEKRRNLINLAYDVLA 407
V C + + +E+ + F+ D +++ E L+ L+ ++E RR L+ A+ +
Sbjct: 801 VGCRECRIAKMTSEELNEVFRRFDKDGTGTLDFEEFLLALRPKMNEFRRKLVKKAFAKMD 980
Query: 408 EKLGQNVTLSGIFSAFNKIRHPDVVKKYGTDKEIF----NNFVLSWGNLNPHIAISREQF 463
+ +T + ++ HP T K+++ +NFV+ N I+ ++
Sbjct: 981 KTGDGIITADDLVGTYDVRSHPRYQNGELTKKQVYQEFLDNFVVG---DNDDGVITMAEW 1151
Query: 464 ESYYHDFSACVDKEDYFEVVLKNSWDIPN 492
YY SA +D++ YF +V+ NSW + +
Sbjct: 1152IDYYSGVSASIDEDVYFGLVMYNSWGVKS 1238
>12671
Length = 807
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Frame = -2
Query: 336 DKDNSGYLPQQQFKQTVQCHGINFS-DLDIKEVIQSFQELD----NKINYSELLIQLKGT 390
DKD +G L Q ++ + + F DL + + Q F+ +D +++YS + + G
Sbjct: 785 DKDGTGILLQHDLERGL----LRFHVDLPPEVLEQVFEIVDPDGERRLDYSFFMRTVLGQ 618
Query: 391 LSEKRRNLINLAYDVLAEKLGQNVTLSGIFSAFNKIRHPDVVKKYGTDKEIFNNFVLSWG 450
++E R+ L+ A+ + ++ LS I FN + K F+ +
Sbjct: 617 MNENRKGLVRKAFSKVDTHRQGSIHLSDIKKFFNANCPYRPSSDADSTKSALQCFLDAVR 438
Query: 451 NLNPHIAISREQFESYYHDFSACVDKEDYFEVVLKNSWDI 490
+S +FE YY S + ++ F +L+N+W+I
Sbjct: 437 CSAKQEEVSFIEFEEYYEGLSVGLQEDQDFANILRNTWNI 318
>01401
Length = 1454
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 336 DKDNSGYLPQQQFKQTVQCHG-INFSDLDIKEVIQSF-QELDNKINYSELL 384
DKDNSG L +++ VQ G + I +++ ++ ++ D K++Y+E +
Sbjct: 292 DKDNSGSLTREEIMAAVQSEGELKLRAAKISDLLVAWHKDADQKLDYNEFV 444
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01299660__315.m00023SCP-2_sterol_transfer_family_protein
(119 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
25159 66 3e-12
11922 60 2e-10
11315 55 1e-08
06436 50 2e-07
18496 28 1.1
07795 26 3.4
>25159
Length = 571
Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%)
Frame = +1
Query: 2 PLKSEKLFDLMTPFLAEKGKDLVPKIKAVYHFAVVEKKGGPVVETWTIDLKNGNGSIKKG 61
PL S++L ++ T G ++V K+K V+ F V + GG W +D KNGNG++K G
Sbjct: 19 PLSSKRLPNVWT----RSGANIVKKMKGVFAFKV-KGTGGKSRALWVVDAKNGNGAVKFG 183
Query: 62 AEGKPDCVFTVLDDDVIAMANKTLNPQQAFMSGKMK 97
+ K D T+ D D++ + LNPQ AF GK++
Sbjct: 184 SNDKADTTITMSDADLVNLMTGKLNPQTAFFQGKLE 291
>11922
Length = 2153
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +1
Query: 9 FDLMTPFLAEKGKDLVPKIKAVYHFAVVEKKGGPVVETWTIDLKNGNGSIKKGA-EGKPD 67
F ++ ++E DLV KI V+ F + G TW +DLKNG GS GA G D
Sbjct: 1045 FQILQGMMSE---DLVKKINGVFQFELTGADAG----TWYLDLKNGEGSSGSGAPAGGAD 1203
Query: 68 CVFTVLDDDVIAMANKTLNPQQAFMSGKMKIKGNMAAATKF 108
C T+ M +P +FM GK+KIKG+MA A K
Sbjct: 1204 CTMTMDSALFTDMFAGKASPTTSFMMGKLKIKGDMALAMKL 1326
>11315
Length = 858
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = +1
Query: 48 TIDLKNGN-GSIKKGA--EGKPDCVFTVLDDDVIAMANKTLNPQQAFMSGKMKIKGNMAA 104
T+DLK+G G + +G GK DC T+ D++ +AM LN QQAFM GK+K+ GN+
Sbjct: 1 TMDLKSGKAGEMYQGQPRSGKADCTLTMSDENFMAMHAGKLNAQQAFMGGKLKLSGNIML 180
Query: 105 ATKFTPDLLPTIPK 118
A K D++ T +
Sbjct: 181 AQKL-GDIINTARQ 219
>06436
Length = 463
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%)
Frame = +2
Query: 55 NGSIKKGAEGKPDCVFTVLDDDVIAMANKTLNPQQAFMSGKMKIKGNMAAATKFTPDLLP 114
NG++K G+ K D T+ D D++ + LNPQ AF GK+KI GNM A K P
Sbjct: 2 NGAVKFGSNDKADTTITMSDADLVNLMTGKLNPQTAFFQGKLKIGGNMGLAMKLKEIQPP 181
Query: 115 TIPKL 119
+ KL
Sbjct: 182 SGSKL 196
>18496
Length = 455
Score = 27.7 bits (60), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = -3
Query: 43 VVETWTIDLKNGNGSIKKGAEG--KPDCVFTVLDDDVIAMANKTLNPQ 88
ETWT D +NG +G EG + C+ +L D L Q
Sbjct: 366 CQETWTTDKQNGEDQRGRGNEGCIEEACLSRLLAHDARKARQDALQEQ 223
>07795
Length = 382
Score = 26.2 bits (56), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -3
Query: 3 LKSEKLFDLMTPFLAEKGKDLVPKIKAVYHFAVVEKKGGPVVETWTIDLK 52
L K+F + ++ DLVPK KG ++ W ++LK
Sbjct: 197 LLHRKMFACRCHYCSKMTVDLVPKXSTT*ILEPRRSKGSNLIYNWNVNLK 48
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00317440__3687.m00148acyl_carrier_protein_reductase
(449 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03983 66 3e-11
05690 62 4e-10
25159 60 1e-09
11922 60 2e-09
07400 58 7e-09
03060 58 7e-09
36378 57 2e-08
06436 52 4e-07
18534 51 9e-07
11315 47 2e-05
00991 47 2e-05
12758 43 2e-04
05235 41 0.001
23588 39 0.006
27168 36 0.030
30783 34 0.12
36857 33 0.24
33913 31 0.94
28229 31 1.2
>03983
Length = 1099
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 6/189 (3%)
Frame = +2
Query: 11 VIVTGAGNGLGREYALYFASKGAKVVVNDLGVTHSGEGTKTNPAQKVVDEIKAAGGVAVA 70
V++TGAG+GLG+ A F G +V+ D+ T + E + + Q+V + A V ++
Sbjct: 185 VLITGAGSGLGKLMAYRFMGLGCDLVLWDIN-TEAIEAMERDMGQQVSCK---AYTVDLS 352
Query: 71 NTDSVEFGDKIVKTAIDAFGKVDVIINNAGILRDITFQKMTDLDWNLI---MKVHVNGTY 127
+ + + VK + G VD+++NNAGI +T +K D +LI M+V+ N +
Sbjct: 353 SREQIYKAADQVKREV---GGVDILVNNAGI---VTGRKFLDCPDSLIEKTMEVNSNAHF 514
Query: 128 SVTRAAWDIMRQQGYGRIINTGSGSGIYGSFGQANYSTAKLGIHGLTLTLAKEGE---KR 184
+A M Q G II+ S +G++G G A+Y +K G +L E E K
Sbjct: 515 WTVKAFLPNMLAQNKGHIISIASSAGLFGVTGLADYCASKFAAVGFDESLRFELEAMGKT 694
Query: 185 NIRVNTIAP 193
+ + P
Sbjct: 695 GVHTTVVCP 721
>05690
Length = 1192
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%)
Frame = +2
Query: 7 DNRVVIVTGAGNGLGREYALYFASKGAKVVVNDLGVTHSGEGTKTNPAQKVVDEIKAAGG 66
+ + V +TG GLG A++ G KV L GEG +T A+ +
Sbjct: 170 EGKAVFITGCDAGLGHLLAIHLDKLGVKVFAGCL--FPGGEGEQTLKAK--CSQRLCTVP 337
Query: 67 VAVANTDSVEFGDKIVKTAIDAFGKVDVIINNAGILRDITFQKMTDLDWNLIMKVHVNGT 126
+ V + + V VK +D ++ ++NNAGI+ + M D + I+ V+ G
Sbjct: 338 LDVCSLEIVTTAADTVKRELDG-QELWGVVNNAGIMHIGCLEVMGQADVDKILDVNYRGQ 514
Query: 127 YSVTRAAWDIMRQQGYGRIINTGSGSGIYGSFGQANYSTAKLGIHGLTLTLAKEGEKRNI 186
+V RA +R+ GR++N S +GI A Y +K + LT +L E + +
Sbjct: 515 VNVIRAFLPFLRRS-RGRLVNVASNTGIAPVPYHAVYCASKAAVAALTESLRLELQPFGV 691
Query: 187 RVNTIAP 193
RV+TI P
Sbjct: 692 RVSTIIP 712
>25159
Length = 571
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%)
Frame = +1
Query: 339 EGTKLVKDLQAVYGFNIVEKKNGPVKRAYTIDLKNGQGAVVFQEAKTADATFTMIDGDFE 398
G +VK ++ V+ F V+ G + + +D KNG GAV F AD T TM D D
Sbjct: 58 SGANIVKKMKGVFAFK-VKGTGGKSRALWVVDAKNGNGAVKFGSNDKADTTITMSDADLV 234
Query: 399 QVCLGKLNPNNAFMTGKMKIKGHMG 423
+ GKLNP AF GK++ + G
Sbjct: 235 NLMTGKLNPQTAFFQGKLEDRRQHG 309
>11922
Length = 2153
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 7/192 (3%)
Frame = +1
Query: 9 RVVIVTGAGNGLGREYALYFASKGAKVVVNDLGVTHSGEGTKTNPAQ--KVVDEIKAAGG 66
+ V +TGA G+G+ A+ A GA +V+ + E P E++ AGG
Sbjct: 103 KTVFITGASRGIGKAIAVKLAKDGANIVI----AAKTAEAHPKLPGTIYTAAKEVEEAGG 270
Query: 67 VAVANTDSVEFGDKI---VKTAIDAFGKVDVIINNAGILRDITFQKMTDLDWNLIMKVHV 123
A+ + D++ VK A D FG +D+++NNA + + ++L+ ++
Sbjct: 271 KALPCIVDIRNEDQVKVAVKAAADKFGGIDILVNNASAISLTGTLQTPMKRYDLMNGINA 450
Query: 124 NGTYSVTRAAWDIMRQQGYGRIINTGSGSGIYGSF--GQANYSTAKLGIHGLTLTLAKEG 181
GTY ++ + + I+N + + G Y+ AK G+ L +A+E
Sbjct: 451 RGTYLCSQVCLPYLLRGSNPHILNISPPLNMSAKWFQGHVAYTMAKYGMSMCALGMAEEF 630
Query: 182 EKRNIRVNTIAP 193
+ VN + P
Sbjct: 631 RDDGVAVNALWP 666
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 343 LVKDLQAVYGFNIVEKKNGPVKRAYTIDLKNGQGAV-VFQEAKTADATFTMIDGDFEQVC 401
LVK + V+ F + G + +DLKNG+G+ A AD T TM F +
Sbjct: 1078 LVKKINGVFQFELTGADAG----TWYLDLKNGEGSSGSGAPAGGADCTMTMDSALFTDMF 1245
Query: 402 LGKLNPNNAFMTGKMKIKGHMGKATKF 428
GK +P +FM GK+KIKG M A K
Sbjct: 1246 AGKASPTTSFMMGKLKIKGDMALAMKL 1326
>07400
Length = 1577
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%)
Frame = -3
Query: 8 NRVVIVTGAGNGLGREYALYFASKGAKVVVNDLGVTHSGEGTKTNPAQKVVDEIKAAGGV 67
++VV++TG G+G E AL +G VV L VT S G + +K V I+ +
Sbjct: 1440 DKVVLITGCDTGIGHEAALEANKRGLTVVAGCLDVTSS--GAQRLAEKKGVHVIR----L 1279
Query: 68 AVANTDSVEFGDKIVKTAIDAFGKVDVIINNAGILRDITFQKMTDLDWNLIMKVHVNGTY 127
V++ +SV K V +A G + +INNAG R + + ++ + V + GT
Sbjct: 1278 DVSSDESVANAMKSVSKLCEAKG-LWAVINNAGFNRMSPVELTSMTTFHHVADVMLFGTV 1102
Query: 128 SVTRAAWDIMRQQGYGRIINTGSGSGIYGSFGQANYSTAKLGIHGLTLTLAKEGEKRNIR 187
VT+A ++R + GR++ S G+ + Y AK G+ + E +K ++
Sbjct: 1101 RVTKAVLPLVR-RAKGRVVTVSSDRGMTTPAYSSAYCIAKFGVEAFSDVXRMEMKKYDVS 925
Query: 188 VNTIAP 193
V+ I P
Sbjct: 924 VSIIQP 907
>03060
Length = 1893
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 16/204 (7%)
Frame = -1
Query: 6 FDNRVVIVTGAGNGLGREYALYFASKGAKVV-----------VNDLGVTHSGEGTKTNPA 54
+VV+VTGA +GLG+ A F G +V+ V D GE P+
Sbjct: 1695 IQGKVVLVTGASSGLGKACAKVFHQHGCQVILAGRSVERLNAVKDYLTKSEGEVKACEPS 1516
Query: 55 QKVVDEIKAAGGVAVANTDSVEFGDKIVKTAIDAFGKVDVIINNAGI-----LRDITFQK 109
+D + + +S++ ++ + A++ FGKVDV+INNAGI + D + Q
Sbjct: 1515 VLAMD---------LEDLNSLQ---QLAERAVELFGKVDVVINNAGISYRGCIEDTSIQ- 1375
Query: 110 MTDLDWNLIMKVHVNGTYSVTRAAWDIMRQQGYGRIINTGSGSGIYGSFGQANYSTAKLG 169
+D L M V+ G ++ + M+ + G I+ S G ++ YS +K
Sbjct: 1374 ---VDQKL-MAVNYFGHVALIKGLLPHMQARNSGHIVGISSVQGKISIPYRSAYSASKHA 1207
Query: 170 IHGLTLTLAKEGEKRNIRVNTIAP 193
+ L E I+V+ ++P
Sbjct: 1206 LQAFFDCLRAELSCTKIKVSLLSP 1135
>36378
Length = 552
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Frame = -3
Query: 67 VAVANTDSVEFGDKI--VKTAIDAFGKVDVIINNAGILRDITFQKMT-DLDWNLIMKVHV 123
V V D +++ I V+T + FG++D+++NNAG + + K + D+D +++++V
Sbjct: 445 VFVVTLDCLQYDTHIPAVQTVLQHFGQIDILVNNAGRSQRAEWVKTSLDVD-RQMLELNV 269
Query: 124 NGTYSVTRAAWDIMRQQGYGRIINTGSGSGIYGSFGQANYSTAKLGIHGLTLTLAKEGEK 183
G S+T+A M Q+G G ++ S +G G+ +Y+ +K +HG +L EG
Sbjct: 268 LGVLSLTKAVLPHMMQRGRGHMVVMSSIAGKCGAPMSGSYTGSKHALHGWFESLRVEGHA 89
Query: 184 RNIRVNTIAP 193
+R P
Sbjct: 88 DTLR*PCCVP 59
>06436
Length = 463
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 33/63 (52%)
Frame = +2
Query: 375 QGAVVFQEAKTADATFTMIDGDFEQVCLGKLNPNNAFMTGKMKIKGHMGKATKFTPALFP 434
GAV F AD T TM D D + GKLNP AF GK+KI G+MG A K
Sbjct: 2 NGAVKFGSNDKADTTITMSDADLVNLMTGKLNPQTAFFQGKLKIGGNMGLAMKLKE--IQ 175
Query: 435 PPT 437
PP+
Sbjct: 176 PPS 184
>18534
Length = 406
Score = 51.2 bits (121), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = -2
Query: 86 IDAFGKVDVIINNAGILRDITFQKMTDLDWNLIMKVHVNGTYSVTRAAWDIMRQQGYGRI 145
ID G VDV+INNAGI+ F ++ D +++ Y +A M + G I
Sbjct: 339 IDDVGHVDVLINNAGIVCCKPFWELHDRVIQNTYNINIISHYWTVKAFLPHMMRHNRGHI 160
Query: 146 INTGSGSGIYGSFGQANYSTAK---LGIHGLTLTLAKEGEKRNIRVNTIAP 193
+ GS +G+ G++G ++Y+ K +G H LT K I ++ I P
Sbjct: 159 VTVGSVTGMLGTYGCSDYAATKYACIGFHESLLTDLKAHGYDQIHMSLICP 7
>11315
Length = 858
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 368 TIDLKNGQGAVVFQ---EAKTADATFTMIDGDFEQVCLGKLNPNNAFMTGKMKIKGHMGK 424
T+DLK+G+ ++Q + AD T TM D +F + GKLN AFM GK+K+ G++
Sbjct: 1 TMDLKSGKAGEMYQGQPRSGKADCTLTMSDENFMAMHAGKLNAQQAFMGGKLKLSGNIML 180
Query: 425 ATKF 428
A K
Sbjct: 181 AQKL 192
>00991
Length = 1146
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Frame = +2
Query: 88 AFGKVDVIINNAGILRDITFQKMTDLDWNLIMKVHVNGTYSVTRAAWDIMRQQ----GYG 143
+ G+VDV INNAG+ D W + V+V G VT+ A+ +M++ G+
Sbjct: 536 SLGRVDVCINNAGLAHDAPLLTGDPAQWKHMFDVNVLGLMMVTKEAFTLMQENNIDDGHI 715
Query: 144 RIINTGSGSGIYGSFGQANYSTAKLGIHGLTLTLAKEGE--KRNIRVNTIAP 193
++N+ SG + Y+ +K + + L E K IR++ + P
Sbjct: 716 VLVNSMSGKRVLNQKRTHCYAASKFAVTAIFEGLRNELRELKSKIRISQVCP 871
>12758
Length = 804
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = -1
Query: 80 KIVKTAIDAFGKVDVIINNAGILRDITFQKMTDLDWNLIMKVHVNGTYSVTRAAW-DIMR 138
++V+ + FG++++++N AGI+ + + ++ + +V Y +T A ++
Sbjct: 690 RVVEETVKQFGRLNILVNCAGIIELGNIENTSLDQYDRMFNTNVRSVYHLTMLAVPHLVN 511
Query: 139 QQGYGRIINTGSGSGIYGSFGQANYSTAKLGIHGLTLTLAKEGEKRNIRVNTIAP 193
Q G I+N S +G+ Y AK I T +A E + +RVN + P
Sbjct: 510 TQ--GNIVNVSSVNGMRSFPNVLAYCMAKSAIDQFTRCVALELAPKKVRVNGVNP 352
>05235
Length = 944
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 13/192 (6%)
Frame = -2
Query: 72 TDSVEFGDKIVKTAIDAFGKVDVIINNAGILRDITFQKMTDLDWNLIMKVHVNGTYSVTR 131
T SV K++KT KVD++IN AGIL D ++ + V+ GT + T
Sbjct: 691 TVSVAESVKLLKTVFAQLKKVDLLINGAGILDDHQIERT--------IAVNFTGTVNTTT 536
Query: 132 AA---WDIMRQQGYGRIINTGSGSGIYGSFGQANYSTAKLGIHGLTLTLAKEGEKRNIRV 188
A WD + G I N S +G + YS +K T +LAK + V
Sbjct: 535 AIMEFWDKRKGGPGGVIANICSVTGFNSIYQVPVYSASKAXALSFTNSLAKLAHITGVTV 356
Query: 189 NTIAP-IAASRM---------TETVLPKEALANLDPKHIVPLVGYLAHESCEETGSLFEI 238
+I P I + + E+ + ++ LAN + ++ + G+++++
Sbjct: 355 YSINPGITHTPLVNKFNSWLDVESHVAEKLLANPTQTSLACAKNFVKAIEANKNGAIWKL 176
Query: 239 AAGFIAKLRWQR 250
G + + W +
Sbjct: 175 DLGRLEAIEWTK 140
>23588
Length = 611
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 11/160 (6%)
Frame = +3
Query: 32 GAKVVVNDLGVTHSGEGTKTNPAQKVVDEIKAAGGVAVANTDSVE---------FGDKIV 82
G V + + G S G + VV + AAG V TD V F ++V
Sbjct: 12 GIAVCLGERGARLSLTGRDATKLENVVQKCVAAG---VKPTDVVTVAGDLTDETFRQQLV 182
Query: 83 KTAIDAFGKVDVIINNAGILRD--ITFQKMTDLDWNLIMKVHVNGTYSVTRAAWDIMRQQ 140
+ +D FG++DV++NNAG ++ M +L N + +++N ++++ + Q
Sbjct: 183 ASTVDKFGQIDVLVNNAGFANPGLLSBPGMENL-LN-VFSLNLNAHVAMSKLCVPHL-LQ 353
Query: 141 GYGRIINTGSGSGIYGSFGQANYSTAKLGIHGLTLTLAKE 180
G I+N S + S Y +K T LA E
Sbjct: 354 SKGNIVNISSNLSMRPSPALGAYCMSKRHWTCFTRVLAYE 473
>27168
Length = 665
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Frame = +3
Query: 9 RVVIVTGAGNGLGREYALYFASKGAKVVVNDLGVTHSGEGTKTNPAQKVVDEIKAAGGVA 68
RV ++TGA G+G E A A G ++++ + AQ+ +D I A
Sbjct: 189 RVALITGANCGIGFETARSLALHGCEIILACRNLA---------TAQEAIDRIAVERPAA 341
Query: 69 VA--NTDSVEFGD-----KIVKTAIDAFGKVDVIINNAGIL 102
A T S++ G K V+ + G +D +I NAG+
Sbjct: 342 RARCRTASLDLGSLSDVKKFVEQIRQSVGHIDYLILNAGVF 464
>30783
Length = 765
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +2
Query: 86 IDAFGKVDVIINNAGILRDITFQKMTDLDWNLIMKVHVNGTYSVTR-AAWDIMRQQG 141
I FG++D+++NNAG+ R + T+ ++ IM +++ + +++ A ++++++G
Sbjct: 14 ISTFGRLDILVNNAGVARFVKPCDTTEEQYDEIMDINMKSVFFLSKLLAPELIKRKG 184
>36857
Length = 697
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 70 ANTDSVEFGDKIVKTAIDAFGKVDVIINNAGI--LRDITFQKMTDLD 114
A+ S E +K K FG++D+++NNAGI RD T++K D++
Sbjct: 50 ADVTSDEDTEKAFKQXKATFGRLDIVVNNAGIGGERDDTWEKCVDIN 190
>33913
Length = 1202
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 319 DSPYKSDQIFTMMKVFLERGEGTKLVKDLQAVYGF 353
D+ +K+D + T+ ++ ++R T L K LQA YGF
Sbjct: 778 DAAWKADHLQTIERLLVKRLYNTPLEKCLQACYGF 882
>28229
Length = 633
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = -2
Query: 67 VAVANTDSVEFGDKIVKTAIDAFGKVDVIINNAGILRDITFQKMTDLD 114
VA TDS I++ I+ +G++DV++NNAGIL + + DLD
Sbjct: 485 VADVTTDSA----AIIQQTINHYGRIDVLVNNAGILGN---GPLIDLD 363
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00531860__3830.m00500regulator_of_chromosome_condensation_pr
otein
(406 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02938 64 7e-11
20162 61 9e-10
26574 42 3e-04
12101 37 0.014
31200 31 1.0
39525 31 1.1
18544 29 3.2
03352 29 4.2
34326 28 5.8
00591 28 8.7
>02938
Length = 1718
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Frame = +3
Query: 71 SALITTDGHLYTFGEGKFGALGHN-DGKDYKEPKHLEFFAKKNLRVVDVTCGNSCMMALT 129
SAL+T G LYTFGE G LG N D + K P+ + N +V V+CG S +ALT
Sbjct: 456 SALVTESGELYTFGESDGGKLGLNGDTDECKTPQQVMAI---NDKVKSVSCGGSHTVALT 626
Query: 130 HDGDVWTWGWGGKGRNIIMQQFFSFAGALGHG-DQKHHYSPQPVQALRKLP-QVKSISGG 187
G+V+ +G G G+ LG G SP +L KLP +V + G
Sbjct: 627 EKGEVYAFGEGSSGQ-------------LGLGVSTLESESP----SLLKLPFKVAQVCCG 755
Query: 188 LYFSLAMNVQNELYYWGRGSHGAFGDG 214
F+ ++ + +LY +G G HG G
Sbjct: 756 ENFTTVVSERGQLYTFGDGRHGKLALG 836
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 3/265 (1%)
Frame = +3
Query: 60 KVEKVVLGQNVSALITTDGHLYTFGEGKFGALGHNDGKDYKEPKHLEFFAKKNLRVVDVT 119
K V G++ + + T G++Y FG G LG + PK ++ +++
Sbjct: 117 KARLVACGRSHTIVATESGNIYAFGANGEGQLGVEGVTETNLPKQVDSLQATPWKMLAAG 296
Query: 120 CGNSCMMALTHDGDVWTWGWGGKGRNIIMQQFFSFAGALGHGDQKHHYSPQPVQALRKLP 179
C +S +ALT DG V+ WG G+G+ LG G+ P+ + +
Sbjct: 297 CDHS--LALTEDGRVFVWGGNGEGQ-------------LGMGEDSDIPVPRQLDVGQS-- 425
Query: 180 QVKSISGGLYFSLAMNVQNELYYWGRGSHGAFG-DGYSKDLLLPRRHNYFDVLQKTEKTI 238
V I+ G Y S + ELY +G G G +G + + P++ V+ +K
Sbjct: 426 -VACIASGYYHSALVTESGELYTFGESDGGKLGLNGDTDECKTPQQ-----VMAINDK-- 581
Query: 239 IKSLKSCNYYTVAHLSDGKLVGWGSNDYGQMGINNEIGVEMHETSPYPSLVHSETFKSPI 298
+KS+ +TVA G++ +G GQ+G +GV E S PSL K P
Sbjct: 582 VKSVSCGGSHTVALTEKGEVYAFGEGSSGQLG----LGVSTLE-SESPSL-----LKLPF 731
Query: 299 EDFQIA--EDVVVIKLQNGEIHYSG 321
+ Q+ E+ + + G+++ G
Sbjct: 732 KVAQVCCGENFTTVVSERGQLYTFG 806
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%)
Frame = +3
Query: 78 GHLYTFGEGKFGALGHNDGKDYKEPKHLEFFAKKNLRVVDVTCGNSCMMALTHDGDVWTW 137
G ++ FG +G LG K P ++ + R+V CG S + T G+++ +
Sbjct: 15 GRVFMFGPNDYGQLGIGAQKVANRPSCVKSLKHEKARLV--ACGRSHTIVATESGNIYAF 188
Query: 138 GWGGKGRNIIMQQFFSFAGALGHGDQKHHYSPQPVQALRKLPQVKSISGGLYFSLAMNVQ 197
G G+G+ LG P+ V +L+ P K ++ G SLA+
Sbjct: 189 GANGEGQ-------------LGVEGVTETNLPKQVDSLQATPW-KMLAAGCDHSLALTED 326
Query: 198 NELYYWGRGSHGAFGDGYSKDLLLPRRHNYFDVLQKTEKTIIKSLKSCNYYTVAHLSDGK 257
++ WG G G G D+ +PR+ DV Q + + S Y++ G+
Sbjct: 327 GRVFVWGGNGEGQLGMGEDSDIPVPRQ---LDVGQS-----VACIASGYYHSALVTESGE 482
Query: 258 LVGWGSNDYGQMGINNE 274
L +G +D G++G+N +
Sbjct: 483 LYTFGESDGGKLGLNGD 533
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Frame = +3
Query: 60 KVEKVVLGQNVSALITTDGHLYTFGEGKFG--ALGHNDGKDYKEPKHLEFFAKKNLRVVD 117
KV +V G+N + +++ G LYTFG+G+ G ALG + ++ F K N++
Sbjct: 732 KVAQVCCGENFTTVVSERGQLYTFGDGRHGKLALGQESFSNQFVCTKVDRFLKFNVK--K 905
Query: 118 VTCGNSCMMALT----HDGDVWTWG--WGGKGRNIIMQQFFSFAGALGHGDQKHHYSPQP 171
CG ++ + +GDV + G N ++ S D++ + SP P
Sbjct: 906 AACGGCHLIVMASPKLENGDVASEDEEEGQIMMNGTIRDSLSLTRTFSARDRRRNASPLP 1085
Query: 172 VQALRKLPQV 181
+ R LP +
Sbjct: 1086LH--RTLPPL 1109
>20162
Length = 1121
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Frame = +1
Query: 71 SALITTDGHLYTFGEGKFGALGHN-DGK--------DYK---EPKHLEFFAKK------- 111
S + +G+LY+FG ++G LGHN DGK +YK P+ + F +K
Sbjct: 115 STMSDINGNLYSFGCPEYGQLGHNSDGKYFVTSNKMEYKCEMTPRKVSVFIEKTRDGHVM 294
Query: 112 ---NLRVVDVTCGNSCMMALTHDGDVWTWGWGGKGRNIIMQQFFSFAGALGHGDQKHHYS 168
++ + +V CG + + + +++WG+GG GR LGH + K
Sbjct: 295 PITDVDIREVACGLNHTLIMDSKKRLFSWGFGGYGR-------------LGHAEPKDELV 435
Query: 169 PQPVQALRKLPQVKS-ISGGLYFSLAMNVQNELYYWGRGSHGAFGDGYSKDLLLPRRHNY 227
P+ ++ + S I G F + +N LY+WG+ Y K
Sbjct: 436 PRLIKFFDGPGRGGSQIQCGSSFCMTVNEHGALYFWGQSKPTGEATMYPK---------- 585
Query: 228 FDVLQKTEKTIIKSLKSCNYYTVAHLSDGKLVGWG-SNDYGQMG 270
++Q ++S+ C Y ++ +D +V WG S YG++G
Sbjct: 586 --LVQDLSGWKVRSIGCC-YRSIVLCADDSVVSWGPSPTYGELG 708
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
Frame = +1
Query: 61 VEKVVLGQNVSALITTDGHLYTFGEGKFGALGHNDGKDYKEPKHLEFFAKKNLRVVDVTC 120
+ +V G N + ++ + L+++G G +G LGH + KD P+ ++FF + C
Sbjct: 313 IREVACGLNHTLIMDSKKRLFSWGFGGYGRLGHAEPKDELVPRLIKFFDGPGRGGSQIQC 492
Query: 121 GNSCMMALTHDGDVWTWGWGGKGRNIIMQQFFSFAGALGHGDQKHHYSPQPVQALRKLPQ 180
G+S M + G ++ WG M P+ VQ L +
Sbjct: 493 GSSFCMTVNEHGALYFWGQSKPTGEATMY-------------------PKLVQDLSGW-K 612
Query: 181 VKSISGGLYFSLAMNVQNELYYWGRG-SHGAFGDGYSK 217
V+SI G Y S+ + + + WG ++G G G +K
Sbjct: 613 VRSI-GCCYRSIVLCADDSVVSWGPSPTYGELGYGENK 723
>26574
Length = 441
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Frame = +3
Query: 82 TFGEGKFGALGHNDGKDYKEPKHLEFFAKKNLRVVDVTCGNSCMMALTHDGDVWTWGWGG 141
T+G+G + LGH + P+ + K +V+DV CG+ +A T G+V+TWG
Sbjct: 3 TWGKGDYHRLGHGTDDHVRRPRRVSALQGK--KVIDVACGSLHCVACTDSGEVFTWGDND 176
Query: 142 KGRNIIMQQFFSFAGALGHGDQKHHYSPQPVQALRKLPQVKSISGGLYFSLAMNVQNEL 200
+G+ LG G P+ V AL+ ++ ++ G SLA + +
Sbjct: 177 EGQ-------------LGDGTTNAIQRPRMVAALQG-KKINRVACGSAHSLAWSTHKPV 311
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Frame = +3
Query: 158 LGHGDQKHHYSPQPVQALRKLPQVKSISGGLYFSLAMNVQNELYYWGRGSHGAFGDGYSK 217
LGHG H P+ V AL+ +V ++ G +A E++ WG G GDG +
Sbjct: 30 LGHGTDDHVRRPRRVSALQG-KKVIDVACGSLHCVACTDSGEVFTWGDNDEGQLGDGTTN 206
Query: 218 DLLLPRRHNYFDVLQ--KTEKTIIKSLKSCNYYTVAHLSDGKL 258
+ PR LQ K + S S + T +S G+L
Sbjct: 207 AIQRPR---MVAALQGKKINRVACGSAHSLAWSTHKPVSAGRL 326
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +3
Query: 203 WGRGSHGAFGDGYSKDLLLPRRHNYFDVLQKTEKTIIKSLKSCNYYTVAHLSDGKLVGWG 262
WG+G + G G + PRR LQ +K I + S + VA G++ WG
Sbjct: 6 WGKGDYHRLGHGTDDHVRRPRR---VSALQG-KKVIDVACGS--LHCVACTDSGEVFTWG 167
Query: 263 SNDYGQMG 270
ND GQ+G
Sbjct: 168 DNDEGQLG 191
>12101
Length = 1020
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = -2
Query: 61 VEKVVLGQNVSALITTDGHLYTFGEGKFGALGHNDGKDYKEPKHLEFFAKKNLRVVDVTC 120
V+++ GQ+ + ++ + G ++G LG GK + + N +V V C
Sbjct: 767 VKQIAGGQHHTLILDNNMRCLAVGRPEYGRLGL--GKVTEVVTKPTAITQLNGKVNYVAC 594
Query: 121 GNSCMMALTHDGDVWTWGWG 140
G +C +T+DG +++WG G
Sbjct: 593 GEACSFXITNDGKLYSWGMG 534
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Frame = -2
Query: 177 KLPQVKSISGGLYFSLAMNVQNELYYWGRGSHGAFGDGYSKDLLLPRRHNYFDVLQKTEK 236
++ VK I+GG + +L ++ GR +G G G +++ T+
Sbjct: 779 EIKDVKQIAGGQHHTLILDNNMRCLAVGRPEYGRLGLGKVTEVV-------------TKP 639
Query: 237 TIIKSLK-SCNYYTVAH------LSDGKLVGWGSNDYGQMGINN 273
T I L NY +DGKL WG Q+G+ +
Sbjct: 638 TAITQLNGKVNYVACGEACSFXITNDGKLYSWGMGSLLQLGVGD 507
>31200
Length = 445
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 86 GKFGALGHNDGKDYKEPKHLEFFAKKNLRVVDVTCGNSCMMALTHDGDVWTWG 138
G FG LGH + KD P+ ++F+ + V CG++ + + G ++ +G
Sbjct: 6 GGFGRLGHAEPKDEMVPRLMKFYDTQGRGGRSVYCGSTFSLIINELGLLYLFG 164
>39525
Length = 450
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 236 KTIIKSLKSCNYYTVAHLSDGKLVGWGSNDYGQMGINNEI 275
+TI +C + VA +GK+ WG N+ GQ+G+++ +
Sbjct: 157 RTIASGCNAC--HCVAITDEGKVYTWGRNEKGQLGLSDTV 44
>18544
Length = 456
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 88 FGALGHNDGKDYKEPKHLEFFAKKNLRVVDVTCGNSCMMALTHDGDVWTW 137
F LG G DY P+ +E +K + +++ + G SC G W W
Sbjct: 431 FEVLG-TSGYDYYHPEDIERVSKCHEQLMQMGEGTSCYYRFLTKGQQWIW 285
>03352
Length = 935
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +2
Query: 60 KVEKVVLGQNVS--ALITTDGHLYTFGEGKFGALGHNDG-KDYKEPKHLE---FFAKKNL 113
K+++V G + ++ DG ++ G K G G + K ++PK ++ +N
Sbjct: 35 KIQQVATGHEGAHALMLADDGSVFFVGLAKRGEDGDSGAAKGRRQPKSVKPKKMIRVENK 214
Query: 114 RVVDVTCGNSCMMALTHDGDVWTWG 138
+VV V C + +T DG+V+ +G
Sbjct: 215 QVVFVACNSGSSAVVTKDGEVYMFG 289
>34326
Length = 435
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 6 YLKNLAFGRYNFSTQAQKQGGNLYLWQGSTFTSTSDLKPVLVKVCDETGKQLNNKVEKVV 65
+LK GR+ Q G+ + F+ + D G + N VE+++
Sbjct: 238 FLKQPEEGRHCADVQGVGADGHDVVQDARYFSE---------QCADVLGARRNLDVEQLL 390
Query: 66 LGQNVSALITTDGHL 80
GQ V+ LIT GH+
Sbjct: 391 YGQRVALLITHHGHV 435
>00591
Length = 1447
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 363 NKFLKTDNENIKTGVYSADNTVFDRGNILSIGGTYRTHYAV 403
+KF + + +++ TGVYS +N F++ + + T R H V
Sbjct: 1025 SKFQRKEAQSLMTGVYSPENGHFEQCXLNTGS*TCRVHQTV 1147
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00218620__3701.m00075hypothetical_protein
(1968 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02147 66 1e-10
19949 58 3e-08
17598 51 4e-06
12806 49 2e-05
01327 47 1e-04
27465 45 3e-04
03156 45 3e-04
00561 43 0.001
12960 42 0.002
01249 42 0.003
04358 42 0.004
12574 40 0.008
03395 40 0.009
30256 37 0.087
15337 37 0.094
19863 36 0.14
15118 36 0.14
19498 36 0.16
13890 35 0.36
17602 35 0.43
02090 34 0.59
33180 33 1.0
13278 33 1.1
03387 33 1.2
37180 33 1.3
15972 33 1.6
21105 33 1.7
14555 31 3.8
11493 31 4.6
15780 31 5.5
03049 30 7.9
25400 30 10.0
>02147
Length = 1547
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 4/242 (1%)
Frame = +2
Query: 624 YQCHAGAI--TSLCLSAGFCATGSEDKYIRIWPLNFTEFLIEAKHEGVVISLDISLDSLK 681
++ H GA+ +L A ATG+ D +IW E L H+ +V S+D S D
Sbjct: 161 FEGHKGAVWGATLNREATRAATGAADFSAKIWDAEKGEELQTFSHKHIVKSVDFSHDGTA 340
Query: 682 IACGTSNGILTVFD--RSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWDME 739
+ G++ +L VFD + +P++F HT I + +I+ S D T+RLW +E
Sbjct: 341 LLTGSNEKLLKVFDLVNTDAEPKSF-AGHTSNIKGALFLSDGKRIISASDDKTVRLWSLE 517
Query: 740 KYEQIYEFPYYLDDNCITLSCSNNSMTFAAGFNSGIFRVFDIEKTNTIFEGRYHESRINH 799
+++ + + +TLS N++ N ++ D + FE E+ I+
Sbjct: 518 TCQEVQQLTFDTPPTSLTLSPDKNTIIVTHSQNIAFYQA-DTLREMKKFEA---EAPISS 685
Query: 800 IQYSPDDKHLIAADENGFYCLYDAQRNYQPVKTFEREIAGKYQFSAFSHDGELLAMIGDC 859
++ +A E+ +D + + +++F+ G FS DGEL A +
Sbjct: 686 ASLHQSERFFVAGGEDFKMYKFDYETG-KEIESFKGHF-GPVHCVRFSPDGELYASGSED 859
Query: 860 GT 861
GT
Sbjct: 860 GT 865
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 33/176 (18%)
Frame = +2
Query: 846 FSHDGELLAMIGDCGTHINIVDTYTMSSILKIFCANTT-IKKLMWSSNNTELFAITDDSK 904
FSHDG L + G + + D + K F +T+ IK ++ S+ + + +DD
Sbjct: 320 FSHDGTAL-LTGSNEKLLKVFDLVNTDAEPKSFAGHTSNIKGALFLSDGKRIISASDDKT 496
Query: 905 VKVFGIDRS-----------------DPQNN-------------EAHLLREISCVHRNG- 933
V+++ ++ P N +A LRE+
Sbjct: 497 VRLWSLETCQEVQQLTFDTPPTSLTLSPDKNTIIVTHSQNIAFYQADTLREMKKFEAEAP 676
Query: 934 LNDISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSN-QVFLSHINKINCIAFSPD 988
++ SL + ++ + G D + +DYE G + F H ++C+ FSPD
Sbjct: 677 ISSASLHQSERFFVAGGEDFKMYKFDYE-----TGKEIESFKGHFGPVHCVRFSPD 829
>19949
Length = 903
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = +2
Query: 638 AGFCATGSEDKYIRIWPLNFTEFLIEAK-HEGVVISLDISLDSLKIACGTSNGILTVFDR 696
+ A+GS D +++W + + K H G V L S D IA + +G++ ++D
Sbjct: 29 GAYTASGSMDCNVKLWDIRRKGCIYTYKGHTGCVCCLRFSPDGRWIASASEDGLVKLWDL 208
Query: 697 STYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWDMEKYEQI 744
+ + T L+ H D + +++HP L + S+D T++ WD+E ++ I
Sbjct: 209 TAGKLLTDLKLHRDAVNTIEFHPHEFLLASGSADRTVKFWDLETFQLI 352
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +2
Query: 403 ASGSILVSSELGTKKQR----FFQGHTSPISCLDVSRDGVWIVSAQDGKPGIVMIWNFLT 458
ASGS+ + +L +++ ++GHT + CL S DG WI SA + G+V +W+
Sbjct: 41 ASGSMDCNVKLWDIRRKGCIYTYKGHTGCVCCLRFSPDGRWIASASED--GLVKLWDLTA 214
Query: 459 GDLVTAFQCPQVNIKCISFSYNRKLLATVGLD 490
G L+T + + + I F + LLA+ D
Sbjct: 215 GKLLTDLKLHRDAVNTIEFHPHEFLLASGSAD 310
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%)
Frame = +2
Query: 712 ITQMQYHPFCNYLITLSSDFTIRLWDMEKYEQIYEFPYYLDDNCITLSCSNNSMTFAAGF 771
+ + +HP+ Y + S D ++LWD+ + IY + + C L S + A+
Sbjct: 2 VKSLDFHPYGAYTASGSMDCNVKLWDIRRKGCIYTYKGHTGCVCC-LRFSPDGRWIASAS 178
Query: 772 NSGIFRVFDIEKTNTIFEGRYHESRINHIQYSPDDKHLIAADENGFYCLYDAQRNYQPVK 831
G+ +++D+ + + + H +N I++ P + L + + +D + +Q +
Sbjct: 179 EDGLVKLWDLTAGKLLTDLKLHRDAVNTIEFHPHEFLLASGSADRTVKFWDLE-TFQLIS 355
Query: 832 TFEREIAGKYQFSAFSHDGELL 853
T E E A + F DG L
Sbjct: 356 TTEPE-ANSIRSILFHPDGVCL 418
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Frame = +2
Query: 623 VYQCHAGAITSLCLS--AGFCATGSEDKYIRIWPLNFTEFLIEAK-HEGVVISLDISLDS 679
Y+ H G + L S + A+ SED +++W L + L + K H V +++
Sbjct: 104 TYKGHTGCVCCLRFSPDGRWIASASEDGLVKLWDLTAGKLLTDLKLHRDAVNTIEFHPHE 283
Query: 680 LKIACGTSNGILTVFDRSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWDME 739
+A G+++ + +D T+Q + + I + +HP L + S D T++++ E
Sbjct: 284 FLLASGSADRTVKFWDLETFQLISTTEPEANSIRSILFHPDGVCLYSGSKD-TLKVYHWE 460
Query: 740 KYEQIYEFPYYLDDNCITLSCSNNSMTFAAGFNSGIFR-VFDIEKTNTI 787
E +Y+ +S SN + A+ + + + V DIEK + I
Sbjct: 461 PLE-LYDTVSVPWGQVCDMSISNTQLIGASFYKTNVASYVVDIEKVSHI 604
>17598
Length = 875
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +1
Query: 930 HRNGLNDISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCIAFSPDN 989
H + ++D+SLS++ +Y+ S D L++WD + + + F+SH +AFSPDN
Sbjct: 118 HSHFVSDVSLSADSRYVLSSSWDATLRLWD----IKKGNTTRRFISHTRDALAVAFSPDN 285
Query: 990 TKIITAGGFEGIYEWNFLGD 1009
+I + G + + WN +G+
Sbjct: 286 RQIASGGRDKALKIWNTVGE 345
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 421 FQGHTSPISCLDVSRDGVWIVSAQDGKPGIVMIWNFLTGDLVTAFQCPQVNIKCISFSYN 480
F GH + I+ +D++ ++ S K GIVM WN G + C + + FS N
Sbjct: 496 FVGHKTQINAIDLALKTYYLASGS--KDGIVMTWNIQNGTFLGKIDC-DCEVNAVKFSPN 666
Query: 481 RKLL 484
+ L
Sbjct: 667 KYWL 678
>12806
Length = 961
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%)
Frame = +3
Query: 930 HRNGLNDISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCIAFSPDN 989
H + ++D++LS++ ++ S D L++WD + + F++H + +AFSPDN
Sbjct: 162 HSHFISDLALSADSRFALSSSWDATLRLWD----IKKGSTTSRFINHTRDVLTVAFSPDN 329
Query: 990 TKIITAGGFEGIYEWNFLGD 1009
+I + G + + WN +G+
Sbjct: 330 RQIASGGRDKNLKIWNIMGE 389
>01327
Length = 2215
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 69/152 (45%)
Frame = +3
Query: 685 GTSNGILTVFDRSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWDMEKYEQI 744
G+ + + ++D + E H EIT++ Y CN + + S D TI++W I
Sbjct: 93 GSKDKSVVLYDYQNGRLEDRWTGHDREITKVCYGASCNGMFSASRDKTIKMWQRGNSHSI 272
Query: 745 YEFPYYLDDNCITLSCSNNSMTFAAGFNSGIFRVFDIEKTNTIFEGRYHESRINHIQYSP 804
+F + D + + ++ +G R++D+E + + ++ + +++ P
Sbjct: 273 RDFIGH-DMVVTAIHLNTDNTLLCSGSRDNTVRIWDVETGACLRQNNIPQNLVTDVKWLP 449
Query: 805 DDKHLIAADENGFYCLYDAQRNYQPVKTFERE 836
+I A E+ +YD+ R V++F ++
Sbjct: 450 GSHLIIQAGEDKEVRIYDS-RTLGIVRSFTKK 542
>27465
Length = 658
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 8/189 (4%)
Frame = -1
Query: 563 NGLARNSIFTVLDFEYAFDNPSAAQQKGSIKKIFVGSKQGMVFQISYNTNDT----ENIY 618
G+ + +LD + D Q+ +++ SKQ V + T ++ +
Sbjct: 568 GGILKTKAIDLLDLKPETDADLVVQEIAEKEQLITPSKQEHVKNWCFACRKTRPKDDHHF 389
Query: 619 QLETVYQCHAGAITSLCL--SAGFCATGSEDKYIRIWPLNFTEFLIEAK-HEGVVISLDI 675
L V + H +T++ S TGS D+ +IW E L + H VV ++
Sbjct: 388 YLFKVLRAHILPLTNVAFNKSGSSFITGSYDRTCKIWDTASAEELHTLEGHRNVVYAIAF 209
Query: 676 SLD-SLKIACGTSNGILTVFDRSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIR 734
+ K+ G+ + ++ + + LR HT EI + ++P + T S D T R
Sbjct: 208 NNPFGDKVITGSFDKTCKLWSTADGKCYHTLRGHTAEIVCVSFNPSSTLIATGSMDTTCR 29
Query: 735 LWDMEKYEQ 743
LWD+EK ++
Sbjct: 28 LWDVEKAQR 2
>03156
Length = 1014
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 60/130 (46%)
Frame = +1
Query: 707 SHTDEITQMQYHPFCNYLITLSSDFTIRLWDMEKYEQIYEFPYYLDDNCITLSCSNNSMT 766
H EIT++ Y CN + + S D TI++W I +F + D + + ++
Sbjct: 49 GHDREITKVCYGASCNGMFSASRDKTIKMWQRGNSHSIRDFIGH-DMVVTAIHLNTDNTL 225
Query: 767 FAAGFNSGIFRVFDIEKTNTIFEGRYHESRINHIQYSPDDKHLIAADENGFYCLYDAQRN 826
+G R++D+E + + ++ + +++ P +I A E+ +YD+ R
Sbjct: 226 LCSGSRDNTVRIWDVETGACLRQNNIPQNLVTDVKWLPGSHLIIQAGEDKEVRIYDS-RT 402
Query: 827 YQPVKTFERE 836
V++F ++
Sbjct: 403 LGIVRSFTKK 432
>00561
Length = 1003
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = -3
Query: 930 HRNGLNDISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCIAFSPDN 989
H + ++D+ LSS+ Y S D+ L++WD L + + F H + +AFS DN
Sbjct: 869 HSHFISDVVLSSDGNYALSGSWDQTLRLWD----LAAGKTTRRFEGHTKDVLSVAFSADN 702
Query: 990 TKIITAGGFEGIYEWNFLGD--LTKQE 1014
+I++ + I WN L + T QE
Sbjct: 701 RQIVSGSRDKTIKLWNTLAECKFTIQE 621
>12960
Length = 550
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Frame = +2
Query: 604 VFQISYNTNDTENIYQL----ETVYQCHAGAITSLCLS--AGFCATGSEDKYIRIWPLNF 657
VF +++ +T ++L E C A+ ++ S + +C T DK +++W +
Sbjct: 89 VFNKTHSVQNTNMKFELPDRKEVTINCKQQAVRAVRFSVDSRYCMTCGSDKSVKLWNPHR 268
Query: 658 TEFL---IEAKHEGVVISLDISLDSLKIACGTSNGILTVFDRSTYQPETFLRSHTDEITQ 714
FL I HE V+ S D+ +I G + + +FD ++ Q R H +
Sbjct: 269 ELFLKTYIGHGHE--VLDAQGSGDNSQICSGGIDKTVVLFDVASGQALRKYRDHAGTVNC 442
Query: 715 MQYHPFCNYLITLSSDFTIRLWD 737
++++ +++ S D T+R WD
Sbjct: 443 VKFNEESTVILSGSLDNTVRAWD 511
>01249
Length = 1743
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -1
Query: 403 ASGSILVSSELGTKKQRFFQGHTSPISCLDVSRDGVWIVS-AQDGKPGIVMIWNFLTGD 460
+ + VS +R QGH+ ++CL S DG + S +Q+GK V+IWN +GD
Sbjct: 981 SQSEVFVSKHTTKAGERVLQGHSDAVTCLAFSSDGQRLASGSQNGK---VIIWNMESGD 814
>04358
Length = 2430
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Frame = +1
Query: 678 DSLKIACGTSNGILTVFDRSTYQPETFLRSHTDEITQMQY-HPFCNYLITLSSDFTIRLW 736
DSL +A +SN ++ ++ R L H D I+ +++ H ++T S D T+R+W
Sbjct: 1330 DSL-VAAASSNFMVRLYSRCRLAQTNTLTGHDDVISSIRFLHTDPGLIMTASHDHTVRIW 1506
Query: 737 DMEK--YEQIYEFPYYLDDNCITLSCSNN--SMTFAAGF---NSGIFRVFDIEKTNTI-- 787
D +++ F + C LSC N AG N + +F + + +
Sbjct: 1507 DPRASVSKEVQRFSGEQNTKCSVLSCDVNISDRVLCAGTEMSNDDAYLLFWDRRKDKLLG 1686
Query: 788 -FEGRYHESRINHIQYSP-DDKHLIAADENGFYCLYDAQRNYQ 828
+E +H+ I + + P +K L+ +G ++D + +
Sbjct: 1687 CYEDSHHDD-ITQVHFGPTSEKTLLTGSTDGLVNVFDVMQTTE 1812
>12574
Length = 521
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 930 HRNGLNDISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCIAFSPDN 989
H+ GL+D++ SS+ K + S DK LKIW++ + + H N + C F+P +
Sbjct: 309 HKLGLSDVAWSSDSKLLCSASDDKTLKIWEF----STGKCMKTLKGHSNYVFCCNFNPQS 476
Query: 990 TKIITA 995
I++
Sbjct: 477 NLIVSG 494
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +3
Query: 930 HRNGLNDISLSSNFKYMASVGGDKLLKIW---DYEFLLNGPGSNQVFLSHINKINCIAFS 986
H L+ + S N ++AS DKL+KIW D +F + H ++ +A+S
Sbjct: 183 HTKALSAVKFSPNGDWLASSSADKLIKIWGAYDGKF-------EKTIAGHKLGLSDVAWS 341
Query: 987 PDNTKIITAGGFEGIYEWNF 1006
D+ + +A + + W F
Sbjct: 342 SDSKLLCSASDDKTLKIWEF 401
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +3
Query: 404 SGSILVSSELGTKKQRF-FQGHTSPISCLDVSRDGVWIVSAQDGKPGIVMIWNFLTGDLV 462
SG+ +++ T +F GHT +S + S +G W+ S+ K ++ IW G
Sbjct: 120 SGTKSSATQKPTYTLKFTLAGHTKALSAVKFSPNGDWLASSSADK--LIKIWGAYDGKFE 293
Query: 463 TAFQCPQVNIKCISFSYNRKLLATVGLDSS 492
++ + +++S + KLL + D +
Sbjct: 294 KTIAGHKLGLSDVAWSSDSKLLCSASDDKT 383
>03395
Length = 2795
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 53/131 (40%)
Frame = +2
Query: 876 KIFCANTTIKKLMWSSNNTELFAITDDSKVKVFGIDRSDPQNNEAHLLREISCVHRNGLN 935
+I ANT K + + + + D K+ + + + LLRE+ +N
Sbjct: 254 QIVLANTLFKCVCFGGKDLHILTSGTDHKIGYWEV-------GDGGLLRELEGSQTGAIN 412
Query: 936 DISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCIAFSPDNTKIITA 995
I + + + + + G D LLK+W Y N + H N+I P+ I++
Sbjct: 413 TIDIDRDGQTILTGGEDSLLKLWRY----NEGEVTHTGIGHSNQITKARICPNRHYIVSG 580
Query: 996 GGFEGIYEWNF 1006
G ++ W F
Sbjct: 581 GEDGALHIWKF 613
>30256
Length = 961
Score = 37.0 bits (84), Expect = 0.087, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Frame = +3
Query: 627 HAGAITSLCLSAGFCATGSEDKYIRIWPLNF---TEFLIEAKHEGVVISLDISLDSLKIA 683
H G + S ++ +GS D+ +++W + T L H V L SL K+
Sbjct: 39 HTGGVWSSQMTGNTVISGSTDRSLKVWNADTGVCTHTLY--GHSSTVRCL--SLSGKKVV 206
Query: 684 CGTSNGILTVFDRSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWD 737
G+ + L V+D + L H + +QY +++ + D+T+R+WD
Sbjct: 207 SGSRDATLRVWDIESGHCLNVLLGHMAAVRCVQYDG--KRVVSGAXDYTVRVWD 362
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 1619 LIGTIDNKYAYETHIVNERFIVTTHQDGKMKLWNIQTAE 1657
L+G ++ A N++F+VT DG +KLW++ T +
Sbjct: 630 LLGPNKHRSAVTCLQFNKKFVVTCSDDGTVKLWDLNTGD 746
>15337
Length = 860
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -1
Query: 929 VHRNGLNDISLSSNFKYMASVGGDKLLKIWDYEFL-LNGPGSNQVFLSHINKINCIAFSP 987
V +++ + S +Y+A VG D L++++Y + L G S+ + C+ +SP
Sbjct: 335 VGTGAISEFAFSPCSRYLAVVGQDGHLRVFNYNSMELIG-----TMKSYFGGLLCVCWSP 171
Query: 988 DNTKIITAGGFEGIYEWNF 1006
D I+T G + + W+F
Sbjct: 170 DGKYIVTGGEDDLVTVWSF 114
>19863
Length = 502
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 38/67 (56%)
Frame = +1
Query: 678 DSLKIACGTSNGILTVFDRSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWD 737
D L++ G+S+ + V+D + L+ H + + + +L++ S+D T+R+W+
Sbjct: 4 DGLQLVSGSSDMSIVVWDVENGVQKLRLQGHAGWVNDVHFSQDQCWLLSCSNDNTVRIWN 183
Query: 738 MEKYEQI 744
+E+ +QI
Sbjct: 184 IEESDQI 204
>15118
Length = 1074
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 419 RFFQGHTSPISCLDVSRDGVWIVSAQDGKPGIVMIWNFLTGDLVTAFQCPQVNIKCISFS 478
R F GH++ I+ L S DG W+++A V W+ + G L+ F + + ++ S
Sbjct: 435 RVFSGHSNSITDLSFSGDGRWLITAS--MDCTVRTWSLVHGRLIDCFAV-EAAVTSLTMS 605
Query: 479 YNRKLLAT 486
++ LAT
Sbjct: 606 PSQDFLAT 629
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Frame = +3
Query: 627 HAGAITSLCLSAGFC--ATGSEDKYIRIWPLNFTE----FLIEAKHEGVVISLDISLDSL 680
H + + A C T D I+ W + L E K + + + DS
Sbjct: 189 HVSGVRGVAFDAFNCLLITAGGDCDIKFWRFGSRDRARVLLKELKMSEGISRILLHRDSN 368
Query: 681 KIACGTSNGILTVFDRSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWDM 738
+A + ++V D T + H++ IT + + +LIT S D T+R W +
Sbjct: 369 MLAVVLEDFTVSVIDVDTLRVVRVFSGHSNSITDLSFSGDGRWLITASMDCTVRTWSL 542
>19498
Length = 903
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Frame = -1
Query: 640 FCATGSEDKYIRIWPLN------------------FTEFLIEAKHEGVVISLDISLDSLK 681
F A+G +DK I IW ++ + H G V+ L S L
Sbjct: 744 FLASGGDDKLIMIWQISRGFGSGKSFGSNVTILEHWRSVATLRGHAGDVLDLAWSPQDLW 565
Query: 682 IACGTSNGILTVFDRSTYQPET-FLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWDMEK 740
+A + + + V++ + + +R H + + + P YL + S D T+R+W
Sbjct: 564 LASCSVDNTIVVWNALKFSEQVAVIRGHAGMVKGVTWDPVGRYLASQSDDKTLRVWRTSD 385
Query: 741 YEQ 743
+++
Sbjct: 384 WKE 376
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -1
Query: 930 HRNGLNDISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHI 977
H +N + S N K++AS G DKL+ IW + G GS + F S++
Sbjct: 789 HLGCVNCVRWSENGKFLASGGDDKLIMIWQ---ISRGFGSGKSFGSNV 655
>13890
Length = 630
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Frame = +1
Query: 801 QYSPDDKHLIAADENGFYCLYDAQRNYQPVKTF-EREIAGKYQFSAFSHDGELLAMIGDC 859
++ P HL+A ++D + PV+ +E G+ Q FSHDG+ + GD
Sbjct: 1 RFHPVTPHLVATGTTDCIQVWDVRHPEVPVRVLTHKEQLGQVQDVMFSHDGQEVFSCGDV 180
Query: 860 GTHIN-----IVDTYTMSSIL--KIFCANTTIKKLMWSSNNTELFAITDDSKVKVFGIDR 912
+ + + + IL +IF T+ +LM ++ A T + VF R
Sbjct: 181 VSRESSDRSIMAWDFRTGVILSNQIFQERYTVTRLMLHPYQSQFLAQTQAGYIAVFSTQR 360
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 23/161 (14%)
Frame = +1
Query: 716 QYHPFCNYLITLSSDFTIRLWDM-------------EKYEQIYEFPYYLDDNCITLSC-- 760
++HP +L+ + I++WD+ E+ Q+ + + D + SC
Sbjct: 1 RFHPVTPHLVATGTTDCIQVWDVRHPEVPVRVLTHKEQLGQVQDVMFSHDGQEV-FSCGD 177
Query: 761 -----SNNSMTFAAGFNSGIFRVFDIEKTNTIFEGRYHESRINHIQYSPDDKHLIAADEN 815
S++ A F +G+ +N IF+ RY +R + P +A +
Sbjct: 178 VVSRESSDRSIMAWDFRTGVIL------SNQIFQERYTVTR---LMLHPYQSQFLAQTQA 330
Query: 816 GFYCLYDAQRNYQ--PVKTFEREIAGKYQFSA-FSHDGELL 853
G+ ++ QR Y+ K FE Y A S DG ++
Sbjct: 331 GYIAVFSTQRPYKMNKNKRFEGHKTAGYNIGASLSQDGSIV 453
>17602
Length = 481
Score = 34.7 bits (78), Expect = 0.43, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +3
Query: 937 ISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCI--AFSPDNTKIIT 994
+ S N KY+ + D LK+WDY + + ++ H N+ CI FS K I
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYVGHRNEKYCIFANFSVTGGKWIV 368
Query: 995 AGGFEG-IYEWNFL--GDLTK 1012
+G + +Y WN L GD T+
Sbjct: 369 SGSEDNMVYIWNLLDQGDSTE 431
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 423 GHTSPISCLDVSRDGVWIVSAQDGKPGIVMIWNFLTGD-LVTAFQCPQVNIKCISFSYNR 481
H+ P++ + +RDG IVS+ G+ IW+ +G L T + + FS N
Sbjct: 48 AHSDPVTAVHFNRDGSLIVSSS--YDGLCRIWDTASGQCLXTLIDDDNPPVSFVKFSPNG 221
Query: 482 KLLATVGLDSS 492
K + LD++
Sbjct: 222 KYILAATLDNT 254
>02090
Length = 1841
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
Frame = -3
Query: 419 RFFQGHTSPISCLDVSRDGVWIVSAQDGKPGIVMIWNFLTGDLVTAFQCPQVNIKCISFS 478
R FQGHT SC+D+S DG + + G V W+ G Q + + S
Sbjct: 1518 RQFQGHTDGASCIDISPDGTKLWTG--GLDNTVRSWDLREG---RQLQQHDFSSQIFSLG 1354
Query: 479 Y--NRKLLATVGLDSSNRXXXXXXXXXXXXXXKKPTIVTKQISDFNILSLKFFPINLNKL 536
Y + LA VG++SSN KP + + +LSLKF
Sbjct: 1353 YCPTGEWLA-VGMESSN---------VEVLHHSKPDKYQLHLHESCVLSLKFAYCG-KWF 1207
Query: 537 VSCGREN-IRFWR 548
VS G++N + WR
Sbjct: 1206 VSTGKDNLLNAWR 1168
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 937 ISLSSNFKYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCIAFSPDNTKIITAG 996
+++S + K S D + +WD L+ + F H + +CI SPD TK+ T G
Sbjct: 1608 LAISPDGKVCFSCCSDGNIAVWD----LHNQTLVRQFQGHTDGASCIDISPDGTKLWTGG 1441
Query: 997 GFEGIYEWNF 1006
+ W+
Sbjct: 1440 LDNTVRSWDL 1411
>33180
Length = 460
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -2
Query: 665 KHEGVVISLDISLDSLKIACGTSNGILTVFDRSTYQPETFLRSHTDEITQMQY-HPFCNY 723
+H + SL S D+ +I G ++G L V+DR + Q + +H D++ + +
Sbjct: 459 EHSFCIFSLMFSSDNTEIVGGANDGCLYVYDRESNQRTLKIDAHDDDVNAVAFADDSSQI 280
Query: 724 LITLSSDFTIRLWD 737
L + D ++WD
Sbjct: 279 LYSGGDDGLCKVWD 238
>13278
Length = 870
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +1
Query: 1339 LVAGSASYNQNEISNIYVIDCKTSEIVKTLGFHTRGVQSIAFSSNRKYIISAGNCKECTV 1398
L+ SAS++ S + + + + + TL H V S+AFS + KY+ S G+ +C V
Sbjct: 115 LILASASFD----STVRLWEVERGLCLHTLTKHQEPVYSVAFSPDGKYLAS-GSFDKC-V 276
Query: 1399 AIWEWPSGKLITS 1411
IW +G L+ S
Sbjct: 277 HIWNVQTGSLVHS 315
>03387
Length = 1891
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +1
Query: 887 LMWSSN-NTELFAITDDSKVKVFGIDRSDPQNN--EAHLLREISCVHRNGLNDISLSSNF 943
L W+ N N L + +DD + ++ I+ + ++ +AH I H + + D++
Sbjct: 379 LSWNPNLNGHLLSASDDHTICLWDINSTQRESRVVDAHT---IFTGHTSVVEDVAWHLLH 549
Query: 944 KYM-ASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCIAFSPDNTKIITAG 996
+ + SV D+ L IWD S+ V +H ++NC++F+P + I+ G
Sbjct: 550 ESLFGSVADDQKLMIWDTRSNTTSKPSH-VVDAHTAEVNCLSFNPYSEFILATG 708
>37180
Length = 681
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 705 LRSHTDEITQMQYHPFCNYLITLSSDFTIRLWD 737
L H E++ + HP ++T S D T RLWD
Sbjct: 7 LNGHDQELSDVHAHPTQRLVVTSSKDMTFRLWD 105
>15972
Length = 1069
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 701 PETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWD 737
PE H + + HP +T+S D T+RLW+
Sbjct: 213 PERTFSGHKGPVRHLAVHPSGKLTLTVSQDRTLRLWN 323
>21105
Length = 650
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 694 FDRSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFTIRLWDMEKYEQIYE 746
FD +T + + +H D +T + P YL++ S D +IRLW+++ + E
Sbjct: 145 FDNNTGKLIHAMVAHLDSVTSLAVDPNGLYLLSGSHDCSIRLWNLDSKTCVQE 303
>14555
Length = 627
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Frame = -3
Query: 622 TVYQCHAGAITSLCLSAGFCATGSEDKYIRIWPLN---FTEFL-----IEAKHEGVVISL 673
+VY+C G + ++GF G+ + PL E + I K + +L
Sbjct: 625 SVYRCLKGTRQT-STASGFTPVGTPSPQDPMTPLADCLIYELIVR*TAIAKKASSLAATL 449
Query: 674 DISLDSLKIACGTSNG-ILTVFDRSTYQPETFLRSHTDEITQMQYHPFCNYLITLSSDFT 732
I L + G +N + V+D T L H + ++ ++ P L T S D+T
Sbjct: 448 WIFLSVVDCCLGVTNDYTVNVWDALKGMRSTILYGHDNRVSCLRISPDGTSLCTGSWDYT 269
Query: 733 IRLWDMEK 740
+R+W E+
Sbjct: 268 LRIWA*ER 245
>11493
Length = 535
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 419 RFFQGHTSPISCLDVSRDG 437
R FQGHT SC+D+S DG
Sbjct: 99 RQFQGHTDGASCIDISPDG 43
>15780
Length = 735
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 41/88 (46%)
Frame = -1
Query: 944 KYMASVGGDKLLKIWDYEFLLNGPGSNQVFLSHINKINCIAFSPDNTKIITAGGFEGIYE 1003
KY+++ G D + +WD + +G + +H + + + FS D T + + G I
Sbjct: 735 KYLSTAGADHTVIVWD---IASGTAVAHL-TAHTDTVYALCFSRDGTVLASGGMDNSIRL 568
Query: 1004 WNFLGDLTKQERIVDFSENANLNTKKIP 1031
W+ + +Q+ D + ++L+ P
Sbjct: 567 WDLARVMEEQDPETDSNVPSSLSVNTNP 484
>03049
Length = 1409
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 763 NSMTFAAGFNSGIFRVFDIEKTNTIFEGRYHESRINHIQYSPDDKHLIAADENGFYC 819
N++ + FNS IF+ +++ I E R + + YSP++ H + N C
Sbjct: 748 NTVILTSLFNSNIFQAWELSADQQILEDRSPKHSLLTGVYSPENCHFVQCSMNTGSC 918
>25400
Length = 462
Score = 30.0 bits (66), Expect = 10.0, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 685 GTSNGILTVFDRSTYQPETFLRS-HTDEITQMQYHPFCNYLITLSSDFTIRLWDMEKY 741
G + G + ++D T + L H + + +HP+ N LI+ S D T+ WD Y
Sbjct: 15 GCATGTILIYDLLTGRVVRKLDGGHRSCVRDVSWHPYTNTLISSSWDGTVGKWDYFDY 188
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00196370__16.m00478TCP-1/cpn60_chaperonin_family_protein
(574 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01159 63 3e-10
29864 55 7e-08
33770 42 7e-04
29631 38 0.009
>01159
Length = 2613
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 68/123 (55%)
Frame = +3
Query: 34 GMEARQKMLIGCEKLADAVQTTLGPKGRNVVIEQTFGPPKITKDGVTVAKNIEFSDKFEN 93
G+EA + ++ + +A ++T+LGPKG + ++ G +T DG T+ ++ +
Sbjct: 180 GIEAHKSHILAAKSVASILKTSLGPKGLDKMMVSGDGDVTVTNDGATILDMMDVDHQI-- 353
Query: 94 IGASLVKQVASKTNDEAGDGTTTATVLARAIFKEGCKSVAAGMNPMDLRRGINLAVDHVV 153
A L+ Q++ +DE GDGTT VLA A+ ++ K + G++P+ + G +A V
Sbjct: 354 --AKLMVQLSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEIAAKCAV 527
Query: 154 KTL 156
+TL
Sbjct: 528 ETL 536
>29864
Length = 1026
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
Frame = +1
Query: 48 LADAVQTTLGPKGRNVVIEQTFGPPKITKDGVTVAKNIEFSDKFENIGASLVKQVASKTN 107
L D +++ LGPKG ++ G K+TKDG + ++ ++ ASL+ +VA+ +
Sbjct: 196 LQDVLRSNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQI----QHPTASLIARVATAQD 363
Query: 108 DEAGDGTTTATVLARAIFKEGCKSVAAGMNPMDLRRGINLAVDHVVKTLK--ANSRPVNT 165
D GDGTT+ ++ + K+ +A G++P + G LA + ++ L+ R V+
Sbjct: 364 DITGDGTTSNVLIIGELLKQADLYIAEGLHPRLITEGFELARNKALEVLEEVKVKREVDR 543
Query: 166 TQLISDVAT-ISANGDREIGDLIAK-------LMEKTGEHGTITVADGKTLNHEIE---- 213
L+ T + E+ DL+ + ++ GE + + + + H+ +
Sbjct: 544 ETLVQVARTSLRTKVHTELADLLTEHVVDAVLAIQXPGEGIDLHMVELMEMQHKTDLDST 723
Query: 214 FVEGMRFDRGYISPYFVTNTK 234
V G+ D G P +TK
Sbjct: 724 LVRGLVMDHGARHPDMKKHTK 786
>33770
Length = 484
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%)
Frame = +1
Query: 64 VIEQTFGPPKITKDGVTVAKNIEFSDKFENIGASLVKQVASKTNDEAGDGTTTATVLARA 123
+I+ G IT DG T+ K ++ + A ++ +++ + E GDGTTT VLA +
Sbjct: 4 MIQAANGDVTITNDGATILKQMQVL----HPAAKMLVELSKAQDIEXGDGTTTVVVLAGS 171
Query: 124 IFKEGCKSVAAGMNPMDLRRGINLAVDHVVKTLKANSRPV 163
+ K +A G++P + A V+ L +P+
Sbjct: 172 LLDASAKLLAKGIHPTMISEAFQKAASKCVELLDGMVKPL 291
>29631
Length = 1257
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%)
Frame = +3
Query: 48 LADAVQTTLGPKGRNVVIEQTFGPPKITKDGVTVAKNIEFSDKFENIGASLVKQVASKTN 107
+AD ++T LGPK ++ G +T DG + + I ++ A + +VA +
Sbjct: 81 IADVIRTCLGPKSMLKMLMDPMGGIVMTNDGNAILREI----NVQHPAAKSMIEVARTQD 248
Query: 108 DEAGDGTTTATVLARAIFKEGCKSVAAGMNP 138
+E GDGT + +LA + + + M+P
Sbjct: 249 EETGDGTKSVIILAGEVLSVAEQFLEQQMHP 341
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00530750__3684.m00123pyruvate_dehydrogenase_complex_dihydrol
ipoamide_acetyltransferase_family_protein
(628 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
21787 61 2e-09
07279 55 6e-08
>21787
Length = 473
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 80/152 (52%), Gaps = 5/152 (3%)
Frame = +3
Query: 404 PITPMRKTIAERLVQSKTTVPHFYLNIDVQMDEVLHLR---KTLNEQSTSKISVNDLIVK 460
P+ ++K + + + + +P F ++ + +++ +R K + EQ + S + +K
Sbjct: 3 PVKGIQKAMVKTM-SAALQIPAFGYYDEIDLTQLVSVRGKLKAIAEQRGIRFSYMPVFLK 179
Query: 461 ASALALRDMPGVNSQW--HGDHIRQFKHADVAVAVSTKTGLITPIVFNAETLGLSQISSK 518
A++LAL P +NS +++ ++ VA+ T GL+ P V N ++L + +I+S+
Sbjct: 180 AASLALHQFPVLNSSLDEKCENVTYKASHNIGVAMDTPDGLLVPNVKNVQSLSVVEIASE 359
Query: 519 TKELAEKARKGGLLPTEYQGGTFTISNLGMYG 550
L + +G L + GGTF++SN+G G
Sbjct: 360 LMRLQDLGARGKLSTADLTGGTFSLSNIGTIG 455
>07279
Length = 844
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%)
Frame = +3
Query: 536 YQGGTFTISNLGMYGIDHFAAIVNPPHGTILAVGATSQKVVPDNDPHAKYPFKTIQSMTV 595
+ GGTFTISN G++G I+NPP IL + + V P M V
Sbjct: 33 WTGGTFTISNGGVFGSMFGTPIINPPQSAILGMHGIFDRPVAVGKNVEIRPM-----MYV 197
Query: 596 TLSCDHRVVDGALGAEWLQKFKGYLEKPYTMLL 628
L+ DHR+VDG +L+K K +E P +LL
Sbjct: 198 ALTYDHRLVDGREAVTFLRKIKAAVEDPRVILL 296
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00561600__3720.m00087ABC_transporter_family_protein
(4926 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01623 64 2e-09
05764 64 2e-09
18373 49 6e-05
02301 42 0.006
30281 40 0.017
27295 28 0.15
22801 36 0.30
03538 36 0.32
11667 35 0.75
14565 35 1.0
07452 34 1.6
30972 33 2.9
14049 31 9.4
>01623
Length = 1414
Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 3/211 (1%)
Frame = +3
Query: 4378 DIVFKNIDYSVKNKKHTRQILKGVSGICKNSQINAILGTSGAGKTTLLNILCQRIQNKPD 4437
+I F++I ++ + I KG + + Q+ A++G SG+GK+T+ +L +
Sbjct: 24 NIEFRDIHFAYPGRPDV-AIFKGFNLQARAGQVTAVVGPSGSGKSTVCGLLLRYYDPNAG 200
Query: 4438 QI-LSGKVLANNLPYTSNQFTQFASYVMQDDILLEALTVKECLQFAVNLK--TVGNQQQK 4494
Q+ L G+ +A P V Q+ IL + AVN T+G +
Sbjct: 201 QVMLDGQNIAELDP---TWLRSHIGTVSQEPILFSCSVAENIAYGAVNPDAVTLGQIEDA 371
Query: 4495 TQKVEEIIKILKLERCQNTFIGGNFIKGISGGEKKRTSIGYELISDPQCLFLDEPTSGLD 4554
+K + +T +G + +SGG+++R +I ++ +P+ L LDE TS LD
Sbjct: 372 ARKANAFNFVSTFPLGLDTMVGERGMM-LSGGQRQRIAIARAILKNPEILLLDEATSALD 548
Query: 4555 SFTAYCIIDFLRKYAHNQNKTVVFTIHQPSS 4585
+ + Y + D L K +TV+ H+ S+
Sbjct: 549 AESEYLVQDALEKLM--GGRTVITIAHRLST 635
>05764
Length = 1395
Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 6/217 (2%)
Frame = -2
Query: 4396 QILKGVSGICKNSQINAILGTSGAGKTTLLNILCQRIQNKPDQILSGKVLANNLP---YT 4452
Q+LKG+S Q A++G SG GK+T++++L QR + P + G++L + Y
Sbjct: 1085 QVLKGISLEISAGQTAALVGISGCGKSTIISLL-QRYYD-PSK---GRLLVDGTDVRDYN 921
Query: 4453 SNQFTQFASYVMQDDILLEALTVKECLQFAVNLKTVGNQ---QQKTQKVEEIIKILKLER 4509
S V Q+ IL + ++++ +Q+ + KT + E I L +
Sbjct: 920 ITALRSLLSVVSQEPILFDC-SIRDNIQYGLESDVPMPDIIAACKTANIHEFIA--SLPQ 750
Query: 4510 CQNTFIGGNFIKGISGGEKKRTSIGYELISDPQCLFLDEPTSGLDSFTAYCIIDFLRKYA 4569
+T +GG + +SGG+K+R +I L+ +P L LDE TS LD+ + + L
Sbjct: 749 GYDTQVGGKGTQ-LSGGQKQRVAIARALVRNPIILLLDEATSALDTESEKLVQAALDN-- 579
Query: 4570 HNQNKTVVFTIHQPSSDIWNMFDNVMLMVEGQFIYQG 4606
+ +T + H+ S+ I N D + +M GQ + +G
Sbjct: 578 AREGRTCIVIAHRLST-IQNA-DVIFVMENGQILEKG 474
>18373
Length = 487
Score = 48.9 bits (115), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Frame = +2
Query: 4828 AISPAITVPTMLFGGYYKNSGDYASWIGWISYLSPYKYSFSALAQNEY 4875
++ P + +P +LFGG++ NSG ++ W+SYLS ++Y+ L N++
Sbjct: 2 SVGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLINQW 145
>02301
Length = 1098
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Frame = -2
Query: 4523 ISGGEKKRTSIGYELISDPQCLFLDEPTSGLDSFTAYCIIDFLRKYAHNQNKTVVFTIHQ 4582
+SGG+K+R +I L+ P L LDE TS LD+ + + + + + +TVV H+
Sbjct: 686 LSGGQKQRLAIARALVRQPAILLLDEATSALDTQSESLVQSAINEC--TRGRTVVIIAHR 513
Query: 4583 PSSDIWNMFDNVMLMVEGQFIYQGT-------GGMNVLNYFSSIGFK----------CPV 4625
++ D V+++ +G+ + +G+ GGM F+S+ + P+
Sbjct: 512 LTT--VEKADRVLVINKGRVVEEGSPSHLLKLGGM-----FTSLARQQLIGTXKNSLSPL 354
Query: 4626 YS-NPADFLMSI 4636
Y NPAD + I
Sbjct: 353 YYINPADEVAKI 318
>30281
Length = 821
Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Frame = -2
Query: 4497 KVEEIIKILKLERCQNTFIGGNFI----KGI--SGGEKKRTSIGYELISDPQCLFLDEPT 4550
K + I++ +LER GG+ KGI SGG+K+R S+ + SD LD+P
Sbjct: 730 KYKAILEQCELERDVAMLPGGDLTQIGEKGINLSGGQKQRVSVARAVYSDSDVYLLDDPL 551
Query: 4551 SGLDSFTAYCIIDFLRKYAHN---QNKTVVFTIHQPSSDIW-NMFDNVMLMVEGQFIYQG 4606
S +DS I F + N + T V H W M D ++++++G+ +G
Sbjct: 550 SAVDSHVGKAI--FSKVIGPNGLLRGTTRVLVTHGVH---WLPMVDEILVLMDGKISERG 386
Query: 4607 T 4607
+
Sbjct: 385 S 383
>27295
Length = 384
Score = 28.1 bits (61), Expect(3) = 0.15, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 4540 DPQCLFLDEPTSGLD 4554
DP+ +LDEPTSG+D
Sbjct: 339 DPRL*YLDEPTSGMD 383
Score = 25.8 bits (55), Expect(3) = 0.15, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +1
Query: 4465 QDDILLEALTVKECLQFAVNLKTVGNQQQKTQKVEEIIKILKLERCQNTFIGGNFIKGIS 4524
Q +IL + LTV E LQF LK + + V E+ K + LE ++ G +S
Sbjct: 130 QHNILFDTLTVDEHLQFFARLKGC-PRDEIPGAVAEMAKEVDLESKRSALAG-----TLS 291
Query: 4525 GG 4526
GG
Sbjct: 292 GG 297
Score = 20.8 bits (42), Expect(3) = 0.15, Method: Composition-based stats.
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 4525 GGEKKRTSIGYELI 4538
GG+K++ S+G LI
Sbjct: 293 GGQKRKLSVGIALI 334
>22801
Length = 753
Score = 36.2 bits (82), Expect = 0.30, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = -1
Query: 4521 KGISGGEKKRTSIGYELISDPQCLFLDEPTSGLDSFTAYCIIDFLRKY-------AHNQN 4573
+ +SGG++ R ++ P L LDEPT+ LD + + D ++ + +H++
Sbjct: 738 RDLSGGQRARVALAELSCRAPDVLVLDEPTNNLDIESIDALADAIKNFTGGVIIVSHDER 559
Query: 4574 KTVVFTIHQPSSDIWNMFDNVMLMVEGQF 4602
I + +W + DN + V+G F
Sbjct: 558 -----LIRDTNCQLWVVEDNTINEVDGDF 487
>03538
Length = 1974
Score = 36.2 bits (82), Expect = 0.32, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = -1
Query: 4521 KGISGGEKKRTSIGYELISDPQCLFLDEPTSGLDSFTAYCIIDFLRKY-------AHNQN 4573
+ +SGG++ R ++ P L LDEPT+ LD + + D ++ + +H++
Sbjct: 1731 RDLSGGQRARVALAELSCRAPDVLVLDEPTNNLDIESIDALADAIKNFTGGVIIVSHDER 1552
Query: 4574 KTVVFTIHQPSSDIWNMFDNVMLMVEGQF 4602
I + +W + DN + V+G F
Sbjct: 1551 -----LIRDTNCQLWVVEDNTINEVDGDF 1480
>11667
Length = 1227
Score = 35.0 bits (79), Expect = 0.75, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +3
Query: 1362 CLNSS-TRVCQKCDSSCVSCFGDGKTDCFKCYG--YMHQQECF--DNCPS-GYFKDDQRY 1415
C N+ + +C C+ +C C G G C KC Y+ +C D C G D+
Sbjct: 561 CTNTQGSYMCMSCNVACDGCTGSGPDHCVKCSAGYYLQDGKCLDMDECSEDGQLCSDEGQ 740
Query: 1416 ICVTCNIPFCLEC 1428
+C + EC
Sbjct: 741 VCENTVGSYKCEC 779
Score = 32.0 bits (71), Expect = 6.2, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Frame = +3
Query: 1362 CLNSSTRVCQKCDSSCVSCF---GDGKTDCFKCYGYMHQQECFDNCPSGYF---KDDQRY 1415
C + R C K + C+ G GK C Y + + D+C +GY+ K+D
Sbjct: 240 CPGGTQRPC-KDNGKCLGAGTREGSGKCKCTAGY----EGKLCDSCKAGYYQSEKNDTHT 404
Query: 1416 ICVTCNIPFCLECLSNTK--CKTCEKGF-----LLSQSKTECTFSLNDESSY 1460
+C C+I C + C C+ G+ + Q EC S ++ Y
Sbjct: 405 VCKVCHISCKNSCTGDGPKLCSECKDGWTHNTDIGCQDINECDTSPCKDTEY 560
>14565
Length = 751
Score = 34.7 bits (78), Expect = 1.0, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 6/135 (4%)
Frame = -3
Query: 1362 CLNSSTRVCQKCDSSCVSC------FGDGKTDCFKCYGYMHQQECFDNCPSGYFKDDQRY 1415
CL + C D++C C G C C Y+ + + F++ S + +
Sbjct: 515 CLQTHACTCPLQDAACFECKRTVWEHGGRIFKCSFCVNYLCEDDQFEHQASCQVVEAENL 336
Query: 1416 ICVTCNIPFCLECLSNTKCKTCEKGFLLSQSKTECTFSLNDESSYAYFNFNQNEIVEVQK 1475
C++CN CL +CKTC D +N+++I+ K
Sbjct: 335 KCLSCNRHGQYSCL---RCKTC---------------YCEDHVRRKGVKYNKDQIIPCPK 210
Query: 1476 CPEDLEQNEEQHICT 1490
C + + +E + T
Sbjct: 209 CGMETAEVKELSMST 165
>07452
Length = 1417
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -2
Query: 1362 CLNSSTRVCQKCDSSCVSCFGDGKTDCFKCYGYMHQQECFDNCPSGYFKDDQRYICVTCN 1421
C N S C++ D + C G T C H Q +CP Y KD+Q +C CN
Sbjct: 1215 CFNPS---CKQLDFLPMKCDACGNTFCKD-----HIQYDNHSCPESYRKDNQVPVCPLCN 1060
Query: 1422 IP 1423
P
Sbjct: 1059 TP 1054
>30972
Length = 479
Score = 33.1 bits (74), Expect = 2.9, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Frame = +3
Query: 1371 QKCDSSCVSCFGDG-KTDCFKCYGYMHQQECFDNCPSGYFKDDQRYICVTCNIPF----- 1424
+K C+SC GD +TD + +C CP+G +D +C C+I F
Sbjct: 108 EKWQYDCLSCGGDTYRTDAM---ASTSKGQCRFFCPAGQERDGDMELCRPCDIGFYRTGV 278
Query: 1425 -----CLECLSNTKCKT 1436
C C +NT+ T
Sbjct: 279 NPYSSCEPCPNNTRTMT 329
>14049
Length = 446
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 3047 LAVPFYEQTNLYLQILEIQTFTQEEAVFI 3075
LA+ F+ ++++YL +LEIQT TQ+ F+
Sbjct: 318 LAILFFLRSSIYLDVLEIQTVTQKVGFFL 404
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00859260__152.m00108EF-
1_guanine_nucleotide_exchange_domain_containing_protein
(225 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00432 57 7e-09
>00432
Length = 1557
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 60/100 (60%)
Frame = -1
Query: 126 ARDGKKKKAIAKTILVFNVKVFEAEQDLDALAKKIYETIQLDGLVWNKEHKKIPVAFGVF 185
A+ K IAK+ +V + K ++ E D+ + +++ +IQ DGL W K +A+G+
Sbjct: 1224 AKKSAKPALIAKSSVVLDCKPWDDETDMKEM-ERLVRSIQKDGLNWGA-AKLQELAYGIK 1051
Query: 186 MLQMGCIIEDDKVNTDSIFEPIQSWEDEVQSVDVETMQKL 225
L + C++ED+K++ + + E I+ +ED VQSVD+ K+
Sbjct: 1050 KLVIICVVEDEKISVEDLKEEIEEFEDYVQSVDIAAFNKI 931
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00427590__47.m00290Radial_spoke_head_containing_protein
(500 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
37257 58 1e-08
27528 38 0.008
06614 30 2.5
>37257
Length = 512
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Frame = -3
Query: 179 ELPPEVEPLGGDEPSVNQLNYYVTTDLVQGNWVELPPITPQQIILSRRIKYVFTGDLNRK 238
+ PP V P + VN+ Y+V D + WV+LP +TP Q+ +R++K TG L+
Sbjct: 438 QTPPAV-PKEDNRTGVNKKVYFVCNDPGK-VWVKLPTVTPAQLSGARQVKKFLTGRLDAP 265
Query: 239 VITNPHFESNVKPANNLQYSVGTEKELLKCMIVRISHCCSVQPRGLKLVDPEDATGRTLI 298
V+T P F N E L+ I RIS + P G D E+
Sbjct: 264 VVTYPPFPGN-------------EANYLRAQIARISAGTHISPLGFYQFDEEEEEEEEGD 124
Query: 299 DPDENFTFPEFQAL-------STLNGWVHSKQNILNEGKL 331
D T +F+ + +L+ WVH Q+IL +G+
Sbjct: 123 ARDHFVTNLDFEGIPVRDLLDPSLSNWVHHVQHILPQGRC 4
>27528
Length = 387
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +3
Query: 110 NFMEEAKWFEWAGVGFGEEESYRIFRALTVLSNAKKEKGLKNVRLWGKIHCTNKD 164
N ME +FE AG+G EE R++ A L N L++VR WGK+ T ++
Sbjct: 231 NLMELCFYFEQAGIGLNREEMIRVWLA---LKNLVDNHPLQHVRFWGKLLGTEQN 386
>06614
Length = 936
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = -2
Query: 154 LWGKIHCTNKDYYIAEGQADFE------DYGELPPEVEPLGGDEPSVNQLNYYVTTDLVQ 207
+ G T+ +AEGQ E D G L EV PLGGD P Q + TD V
Sbjct: 869 VAGPALLTDARVRLAEGQGHLESGHPPPDVGPLVGEVLPLGGDHPEGLQEDV---TDPVP 699
Query: 208 GNWVELPPITPQQIILSRRIK 228
G P T + + S+R +
Sbjct: 698 GPVPATLPQTKRSLPRSQRTQ 636
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00145630__3702.m00190Elongation_factor_TS_family_protein
(844 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00360 57 4e-08
05174 30 2.9
>00360
Length = 1481
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 7/177 (3%)
Frame = +3
Query: 541 LKKLRDETGSPIAQVKKALDEFGGDFEKAKQFLIE----KGLASAQKKLDKETREGVIGL 596
L KLR T KKAL++F D EKA+++L E +G A A K + G+I +
Sbjct: 162 LSKLRKRTXISFINCKKALEQFDNDLEKAEKWLKEEAQKEGWAKATKLQTRSMANGLIAI 341
Query: 597 YVSQNRDLAVIGEVNCETDFVARSDLFLDFVHSTLKTIVDQKKNVKFNDEQKDQILQFLQ 656
N A + EVNCETDFVAR+ F+ K + +LQ Q
Sbjct: 342 V--SNPHAATMIEVNCETDFVARNSKFISL-------------TTKLAQDCHHALLQQSQ 476
Query: 657 N-NTLNKEI--IEGTKNENMDKVRQLVISKLQENINVRRVSTVEIQNGVIGSYTHNT 710
++K + + + + L + + EN+ +RR + + +Y H +
Sbjct: 477 PFVVMDKXVGSMXAADGRTLADLVALEVGNIGENMALRRAVHLRAAQSALATYVHAS 647
>05174
Length = 1407
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = -2
Query: 593 VIGLYVSQNRDLAVIGEVNCETD 615
++GLY+ + ++AVIGEV+ ETD
Sbjct: 1187 ILGLYIVRGDNVAVIGEVDDETD 1119
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00702270__109.m00143Beige/BEACH_domain_containing_protein
(4426 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01060 59 4e-08
18921 58 8e-08
03240 54 2e-06
18484 51 1e-05
27405 50 2e-05
01756 50 2e-05
12721 49 4e-05
09606 49 5e-05
01966 48 7e-05
14126 47 2e-04
01707 45 6e-04
19301 44 0.001
26560 43 0.002
11780 43 0.003
31885 42 0.004
30755 42 0.006
06405 41 0.009
07940 41 0.009
01718 41 0.009
29581 41 0.012
14420 40 0.023
19094 39 0.047
00392 39 0.051
04138 39 0.058
14477 39 0.059
04852 39 0.068
14116 38 0.086
16708 37 0.15
04591 37 0.19
21808 36 0.30
11185 35 0.93
00715 34 1.1
21079 34 1.5
00300 33 1.8
06045 33 2.3
17253 33 2.4
27546 33 2.6
13066 33 3.2
08888 32 3.8
11404 32 4.3
20789 32 4.8
01392 32 8.4
>01060
Length = 1800
Score = 58.9 bits (141), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = +1
Query: 3974 NIVYQEMKRELSQKGYDEFRFLGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVI 4033
NI M E + +F+ +G+G G+V + ++T ++ A+K I ++ S+D V
Sbjct: 34 NIKRLMMDFETALSDLTDFQKIGEGTYGVVYKCRHRATGRKLAMKKIRLRGSEDGVPSSA 213
Query: 4034 LGQVQQEIKMLNQCKGSPYVVNLLHQIEGNDFIFLVLTECLGTLNEII-KNTQNERLNEL 4092
+ +EI ML + + + +V L I ++ +FLV L I K + L+
Sbjct: 214 I----REIAMLRELRHTN-IVCLEDVIMEDERLFLVFEFLSMDLKMYIDKFPEGVVLDRR 378
Query: 4093 SAIKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLA 4139
Y I G+ F H ++ + DLK N+LI++ G ++DFG+A
Sbjct: 379 LVKSYVFQIVTGIXFCHQRRIVHRDLKPQNLLINHTGAIKIADFGMA 519
>18921
Length = 697
Score = 58.2 bits (139), Expect = 8e-08, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Frame = +2
Query: 3989 YDEFRFLGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCK 4048
+D LG+G+ G V + K T + AIK + + L ++ +EI ++ QC
Sbjct: 35 FDILGKLGEGSYGSVFKSLHKETGQVLAIKQVPVDTD--------LQEIIKEISIMQQCD 190
Query: 4049 GSPYVVNLLHQIEGNDFIFLVLTEC-LGTLNEIIKNTQNERL--NELSAIKYAKDIAEGL 4105
S Y+V N +++V+ C G++++I++ +N+ L E++ I Y +GL
Sbjct: 191 -SKYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRNKTLVEREIATILYYT--LKGL 358
Query: 4106 YFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNL 4142
++HS++ + D+K NIL++ G+A ++DFG+A L
Sbjct: 359 XYLHSRRKIHRDIKAGNILLNNEGHAKLADFGVAGQL 469
>03240
Length = 1683
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Frame = -3
Query: 3965 NEPTLSKIQNIVYQEMKRELSQKG---------------YDEFRFLGQGAQGLVVLAKEK 4009
NE K+ ++M+R L QK +++ + LG GA G V L ++
Sbjct: 1402 NEMAKVKLSEEAARQMRRMLHQKESNYIRLKRAKMDKCMFEKIKTLGVGAFGEVSLCRKN 1223
Query: 4010 STNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCKGSPYVVNLLHQIEGNDFIFLV 4069
T YA+K + D + + + V+ E +L + + +VV L + + +++++ V
Sbjct: 1222 DTGMLYAMKTLR---KSDVLKRNQVAHVKAERDILAEAD-NEWVVKLYYSFQDHNYLYFV 1055
Query: 4070 LTECLG--TLNEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDY 4127
+ G + +I+ E L+E A Y ++ + + +H + D+K DNILID
Sbjct: 1054 MDYVPGGDLMGLLIRM---EILDEPLARFYVAELVQAIESVHRMGFIHRDIKPDNILIDR 884
Query: 4128 NGNAVVSDFGL 4138
NG+ ++DFGL
Sbjct: 883 NGHIKLTDFGL 851
>18484
Length = 635
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +1
Query: 4085 QNERLNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGL 4138
Q + E A YA +IA GL+F+H + + DLK+DN+++D G+ ++DFG+
Sbjct: 22 QEGKFKEPVAAFYAAEIAVGLFFLHDQGIIYRDLKLDNVMLDSEGHIKIADFGM 183
>27405
Length = 532
Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 74/149 (49%)
Frame = -3
Query: 4001 GLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCKGSPYVVNLLHQI 4060
G V ++ T K YA+K + K K + + + + +++ +GSP++V + +
Sbjct: 524 GEVYGCRKADTGKMYAMKCLDKKRIKMKGGETLALNERIMLSLVSTGEGSPFIVCMTYAF 345
Query: 4061 EGNDFIFLVLTECLGTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLVNDLKM 4120
+ + + +L + + + +Q+ E YA ++ GL +HS+ + DLK
Sbjct: 344 QTPEKLCFIL-DLMNGGDLHYHLSQHGVFTEKEVRFYAAEVMLGLEHMHSRFVVYRDLKP 168
Query: 4121 DNILIDYNGNAVVSDFGLADNLPQQSGYA 4149
NIL+D NG+ +SD GLA + ++ +A
Sbjct: 167 ANILLDENGHVRISDLGLACDFSKKKPHA 81
>01756
Length = 1858
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Frame = -3
Query: 3989 YDEFRFLGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCK 4048
Y++ +GQG G V A+ K T + A+K + + + K+ L +EIK+L Q
Sbjct: 1736 YEKLAKIGQGTFGEVFKARCKKTKQVVAMKKVLMDNEKEGFPITAL----REIKIL-QLL 1572
Query: 4049 GSPYVVNLLH-----QIEGNDF---IFLVLTECLGTLNEIIKNTQNERLNELSAIK-YAK 4099
VV+L+ N + +LV C L ++ N + L IK K
Sbjct: 1571 NHENVVDLIEICSTKATSANRYKSMFYLVFEFCEHDLAGLLSNM--SVVFNLPEIKEVMK 1398
Query: 4100 DIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLA 4139
+ GLY+IH K L D+K NILI G ++DFGLA
Sbjct: 1397 QLMNGLYYIHRNKILHRDMKAANILITKQGVLKLADFGLA 1278
>12721
Length = 821
Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Frame = +1
Query: 3990 DEFRFLGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCKG 4049
D+F +G+G+ G+V +A + ++ A+K + ++ K +++ +V ++ +
Sbjct: 97 DDFMKIGEGSTGIVCIATSRD-GRQMAVKKMDLR--KQQRRELLFNEV-----VVMRDYH 252
Query: 4050 SPYVVNLLHQIEGNDFIFLVLTECL--GTLNEIIKNTQNERLNELSAIKYAKDIAEGLYF 4107
P +V + + ND +++V+ E + G L +I+ N R++E+ + + L F
Sbjct: 253 HPNIVEMYNSYLVNDELWVVM-EFMEGGALTDIVTNN---RMDEVQIATVCRACLKALAF 420
Query: 4108 IHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQ 4144
+H+ + D+K D+IL+ ++G + DFG + Q
Sbjct: 421 LHANGVIHRDIKSDSILLSHDGKVKLXDFGFCAQVTQ 531
>09606
Length = 1300
Score = 48.5 bits (114), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 2/170 (1%)
Frame = -3
Query: 3989 YDEFRFLGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCK 4048
Y+E LG+G ++ + K T AI I ++ +V ++M +
Sbjct: 1100 YEE---LGKGEHSIIYKGRRKGTINFVAIHCI---------EKCKRPEVTNTVRMTHDIS 957
Query: 4049 GSPYVVNLLHQIEGNDFIFLVLTECLG-TLNEIIKNTQNERLNELSAIKYAKDIAEGLYF 4107
P VV E ++ ++LV+ C G +L +I+ Q+ L E S + + GL++
Sbjct: 956 -HPNVVQFHEWYETSNHLWLVVELCTGGSLADIL--AQDHHLPETSIRDFGIHLVTGLHY 786
Query: 4108 IHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQQSGYAIEE-YVKF 4156
IHS L +DL+ +L+D +G +DFGL+ + G +EE + KF
Sbjct: 785 IHSLGILFHDLRPSKVLLDTSGVLKFADFGLS----KVEGENLEELFFKF 648
>01966
Length = 1735
Score = 48.1 bits (113), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Frame = -1
Query: 4007 KEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCKGSPYVVNLLHQIEGNDFI 4066
+ ++T ++ A+K I ++ S+D V + +EI ML + + + +V L I ++ +
Sbjct: 1651 RHRATGRKLAMKKIRLRGSEDGVPSSAI----REIAMLRELRHTN-IVCLEDVIMEDERL 1487
Query: 4067 FLVLTECLGTLNEII-KNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNILI 4125
FLV L I K + L+ Y I G+ F H ++ + DLK N+LI
Sbjct: 1486 FLVFEFLSMDLKMYIDKFPEGVVLDRRLVKSYVFQIVTGINFCHQRRIVHRDLKPQNLLI 1307
Query: 4126 DYNGNAVVSDFGLA 4139
++ G ++DFG+A
Sbjct: 1306 NHTGAIKIADFGMA 1265
>14126
Length = 1265
Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Frame = +3
Query: 3981 KRELSQKGYDEFRFLGQGAQGLVVLAKE-KSTNKRYAIKGIHIKDSKDNVDQVILGQVQQ 4039
+R+ +++ Y+E +G GA G V A++ ++ + A+K I + ++++ + + + +
Sbjct: 171 RRDSTEQKYEEVAVIGNGAYGTVYKARDLRNQGEFVAMKRIRLNNTEEGMPMMAI----R 338
Query: 4040 EIKMLNQCKG--SPYVVNLLHQIEGNDFIFLVLTECLGTLNEIIKNTQNERLNELSAIKY 4097
EI ML Q + P VV LL D +T+ LN + + +++ L+
Sbjct: 339 EISMLKQLEQYEHPNVVRLL------DVSHNTITDREIRLNLVFEYIEHDLATYLAKCPS 500
Query: 4098 A-------KDIA----EGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLA 4139
KD+ G+ F+HS + + DLK N+LI +G ++DFGLA
Sbjct: 501 PGLGPDRIKDLMLQLLNGVDFLHSNRIVHRDLKPQNLLISKDGRLKLADFGLA 659
>01707
Length = 757
Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Frame = +1
Query: 3989 YDEFRFLGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCK 4048
Y++ +G+G+ G+V + K T++ AIK +S+D D +I +EI+ML Q K
Sbjct: 70 YEKIGKIGEGSYGVVFKCRNKETSQLVAIK--KFVESED--DPLIKKIAMREIRMLKQLK 237
Query: 4049 GSPYVVNLLHQIEGNDFIFLVLTECLGTL-NEIIKNTQNERLNELSAIKYAKDIAEGLYF 4107
P +V L+ + LV TL NE+ + + + I Y +A + F
Sbjct: 238 -HPNLVRLIEVFRRKKRLHLVFDYVDHTLLNELDRYPRGLPEPMVKRIIYQTLLA--VNF 408
Query: 4108 IHSKKCLVNDLKMDNILIDYNGNAVVSDFGLA 4139
H + D+K +NILI G + DFG A
Sbjct: 409 CHQYNTIHRDVKPENILITRQGQVKLCDFGFA 504
>19301
Length = 712
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 9/180 (5%)
Frame = +2
Query: 3967 PTLSKIQNIVYQEMKR----ELSQKGYDEFRFLGQGAQGLVVL----AKEKSTNKRYAIK 4018
P + I E+K+ E+ + + +LG GAQG V L A+E + K IK
Sbjct: 233 PVWTIIGKAAAAELKQQDDWEIPFESITDLEWLGSGAQGAVFLGKLCAEEVAVKKVRDIK 412
Query: 4019 GIHIKDSKDNVDQVILGQVQQEIKMLNQCKGSPYVVNLLHQIEGNDFIFLVLTEC-LGTL 4077
I++ ++ LN P +++ +++ C G L
Sbjct: 413 ETDIRN----------------LRKLNH----PNIISFKGVCTQAPCYCIIMEYCPYGQL 532
Query: 4078 NEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFG 4137
E++++ + + + ++K IA G+ ++HS K + DLK N+L+ N +SDFG
Sbjct: 533 YEVLRD--GKEIPPALVLDWSKQIASGMNYLHSHKIIHRDLKSPNVLVAKNDVVKISDFG 706
>26560
Length = 398
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = -1
Query: 4097 YAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQQSGYA 4149
YA ++ GL +HS+ + DLK NIL+D NG+ +SD GLA + ++ +A
Sbjct: 341 YAAEVMLGLEHMHSRFVVYRDLKPANILLDENGHVRISDLGLACDFSKKRPHA 183
>11780
Length = 1713
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 4066 IFLVLTECLGTLN--EIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNI 4123
IFLV TE +G N E +++ + + I +A D + ++ SK+ + DL N+
Sbjct: 801 IFLV-TEFMGKGNLVEYLRSRGRSVITKKDQINFATDTCAAMEYLESKRLVHRDLAARNV 977
Query: 4124 LIDYNGNAVVSDFGLA 4139
L+ +G A VSDFGLA
Sbjct: 978 LVHDDGKAKVSDFGLA 1025
>31885
Length = 529
Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = -2
Query: 4051 PYVVNLLHQIEGNDFIFLVLTECLGTLNEIIKNTQNERLNELSAIK-YAKDIAEGLYFIH 4109
P++VNL + + + +F+V+ LG ++ + Q E +K Y +A L ++
Sbjct: 492 PFLVNLWYAFQDEEDLFMVVDLFLG--GDLRYHMQQEVSFREDCVKFYLCQLALVLDYLR 319
Query: 4110 SKKCLVNDLKMDNILIDYNGNAVVSDFGLADNL 4142
S+K + D+K DNIL+D G+ V+DF +A L
Sbjct: 318 SQKIVHRDIKPDNILLDEQGHCHVTDFNIATQL 220
>30755
Length = 1137
Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +2
Query: 4097 YAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGL 4138
Y +I L ++HS+ + DLK++N+L+D +G+ V+DFGL
Sbjct: 47 YGAEIISALGYLHSQGIIYRDLKLENLLLDKDGHIKVADFGL 172
>06405
Length = 1965
Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Frame = +1
Query: 3995 LGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCKGSPYVV 4054
LG G G V A K NK A+K + D + L +E ++ + K P +V
Sbjct: 283 LGGGQYGDVYEAMWKRYNKIVAVKTL-------KEDTMALNDFLEEAAIMKEMK-HPNLV 438
Query: 4055 NLLHQIEGNDFIFLVLTECL--GTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKK 4112
LL + + F ++TE + G L + ++++ E + + A IA G+ ++ +K
Sbjct: 439 QLL-GVCTREPPFYIVTEFMPHGNLLDYLRSSTREENGPTALMYMATQIASGMAYLETKN 615
Query: 4113 CLVNDLKMDNILIDYNGNAVVSDFGLA 4139
+ DL N L+ + V+DFGLA
Sbjct: 616 FIHRDLAARNCLVADSNMVKVADFGLA 696
>07940
Length = 1336
Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -3
Query: 4095 IKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQQSGY 4148
I YA +A G+ ++ SK+C+ DL N+L+ ++DFGL NL Q Y
Sbjct: 338 ISYAYQVARGMEYLASKQCIHRDLAARNVLVAEEYVLKIADFGLTRNLQQFDYY 177
>01718
Length = 959
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +3
Query: 4075 GTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNILI---DYNG-N 4130
G L ++++ ++E L I+ +A GL ++HS + + DL NILI D +G +
Sbjct: 387 GNLEQLLEK-KDEELPWTQRIQLTLGLARGLDYLHSTRFIHRDLTSKNILIRREDNHGYH 563
Query: 4131 AVVSDFGLADNLP 4143
AV++DFGLA +P
Sbjct: 564 AVIADFGLATKIP 602
>29581
Length = 1278
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Frame = -2
Query: 4047 CKGSPYVVNLLHQ--------IEGN--DFIFLVLTECLGTLNEIIKNTQNERLNELSAIK 4096
C S +++NL HQ + G D +FLV+ C L ++ N +E
Sbjct: 1211 CVRSTFLLNLRHQNIVQLQEVVVGKSLDSLFLVMEYCEQDLASLLDNMPAP-FSESQVKC 1035
Query: 4097 YAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADN 4141
+ +GL ++H + DLK+ N+L+ G ++DFGLA N
Sbjct: 1034 IVLQLLKGLRYLHEAFIIHRDLKVSNLLMTDKGCVKIADFGLARN 900
>14420
Length = 528
Score = 40.0 bits (92), Expect = 0.023, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Frame = +2
Query: 4050 SPYVVNLLHQIEGNDFIFLVLTECL--GTLNEIIKNTQNERLNELSAIKYAKDIAEGLYF 4107
+P +VN L + +++V+ E L G+L +++ T ++E ++ + L F
Sbjct: 77 NPNIVNYLDSYLVGEELWVVM-EFLAGGSLTDVVTETC---MDEGQIAAVCRECLQALEF 244
Query: 4108 IHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNL-PQQS 4146
+H + + D+K DNIL+ +G+ ++DFG L P+QS
Sbjct: 245 LHENQVIHRDIKSDNILLGMDGSVKLTDFGFCAQLSPEQS 364
>19094
Length = 898
Score = 38.9 bits (89), Expect = 0.047, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = +1
Query: 4075 GTLNEIIKNTQNERL--NELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAV 4132
G++++I++ +N+ L E++ I Y +GL ++HS++ + D+K NIL++ G+A
Sbjct: 10 GSVSDIMR-LRNKTLVEREIATILYYT--LKGL*YLHSRRKIHRDIKAGNILLNNEGHAK 180
Query: 4133 VSDFGLADNL 4142
++DFG+A L
Sbjct: 181 LADFGVAGQL 210
>00392
Length = 668
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +3
Query: 4063 NDFIFLVLTECL--GTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLV--NDL 4118
N + +++TE + GTL +K + + L + + + +GLYF+H++ V DL
Sbjct: 159 NRKVIILVTELMTSGTLKTYLKRFKKPNVKILK--NWCRQVLKGLYFLHTRTPPVIHRDL 332
Query: 4119 KMDNILI-DYNGNAVVSDFGLA 4139
K DNI I G+ + D GLA
Sbjct: 333 KCDNIFITGPTGSVKIGDLGLA 398
>04138
Length = 800
Score = 38.5 bits (88), Expect = 0.058, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 4103 EGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLAD----NLPQQSGY 4148
E LY+IH K L D+K NILI G ++DFGLA NL Q + Y
Sbjct: 46 ERLYYIHRNKILHRDMKAANILITKQGVLKLADFGLARAFSVNLRQPNRY 195
>14477
Length = 493
Score = 38.5 bits (88), Expect = 0.059, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 54/101 (53%)
Frame = -1
Query: 4052 YVVNLLHQIEGNDFIFLVLTECLGTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSK 4111
++V L+ EG + ++ LG LN+ + +N+ L + ++ +++G+ ++ +
Sbjct: 304 HIVRLIGLCEGETMMLVLELAKLGPLNKFLP--KNKHLPLWNILELMWQVSQGMEYLEAN 131
Query: 4112 KCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQQSGYAIEE 4152
K + DL NIL+ A +SDFG++ L +++ Y + +
Sbjct: 130 KFVHRDLAARNILLCDEHFAKISDFGMSKTLSRENNYYMAQ 8
>04852
Length = 1462
Score = 38.5 bits (88), Expect = 0.068, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +1
Query: 4095 IKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLA---DNLPQQSG 4147
+ YA IA G+ F+ S+KC+ DL N+L+ ++DFGL+ D ++SG
Sbjct: 334 LSYAFQIARGMEFLASRKCIHRDLAARNVLVTEEHVLKIADFGLSRTGDYYKKRSG 501
>14116
Length = 1017
Score = 38.1 bits (87), Expect = 0.086, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%)
Frame = -1
Query: 4095 IKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQQSGYAIEEYV 4154
I Y DIA G+ ++ K + DL N ++D + + V+DFGLA ++ ++ Y+ E
Sbjct: 312 IMYGVDIARGMDYLAGLKFVHRDLAARNCMLDEDFHVKVADFGLARDIYEKEYYSSENK- 136
Query: 4155 KFFLHLLKKKYDAYLFILIQLKKGNIICQAPECYDSSKFDIYS 4197
K K L L+KGN YD SK D++S
Sbjct: 135 -------KAKLPVKWMALESLEKGN--------YD-SKTDVWS 55
>16708
Length = 1397
Score = 37.4 bits (85), Expect = 0.15, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
Frame = -1
Query: 3992 FRFLGQGAQGLVVLAKEKSTNKRYAIK-GIHIKDSKDNVDQVILGQVQ------QEIKML 4044
+ LG+G G V A+ ST+++ A+K I S D V+ LG+++ Q
Sbjct: 1388 LQVLGKGVFGKVYEARLLSTHEKAALKTSILCHHSLDEVEA--LGRIEGGFYLAQMFGAW 1215
Query: 4045 NQCKGSPYVVNLLHQIEGNDFIFLVLTECLGTLNEIIKNTQNERL-----NELSAIKYAK 4099
C P + LLH E +G L + + +N+ + N A
Sbjct: 1214 VTCLPFPKMNILLHFYE------------MGPLCNVYAHYKNKEMPIRWSNPAMVCCIAG 1071
Query: 4100 DIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLA 4139
L IH + D+K DN+L+D +GN ++D+G+A
Sbjct: 1070 QXVCALEHIHELGVVHMDVKADNVLVDAHGNCKLTDYGIA 951
>04591
Length = 1117
Score = 37.0 bits (84), Expect = 0.19, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = -2
Query: 4104 GLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLA 4139
GL++IH+K+ L D+K NIL+ +G ++DFGL+
Sbjct: 861 GLFYIHTKQILHRDIKAANILLTRDGVLKLADFGLS 754
>21808
Length = 1011
Score = 36.2 bits (82), Expect = 0.30, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +1
Query: 4051 PYVVNLLHQIEGNDFIFLVLTECL--GTLNEIIKNTQNERLNELSA-IKYAKDIAEGLYF 4107
P ++ L +D IF++ TE + G+L E ++ R+ +L A I IA G+ +
Sbjct: 112 PKLIQLYAVCTQDDPIFII-TELMKNGSLLEFLQG--KGRVLKLPALIDIGAQIACGMAY 282
Query: 4108 IHSKKCLVNDLKMDNILIDYNGNAVVSDFGLA 4139
+ S+ + DL NIL+ N ++DFGLA
Sbjct: 283 LESQNYIHRDLAARNILVSDNNTVKIADFGLA 378
>11185
Length = 473
Score = 34.7 bits (78), Expect = 0.93, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 4101 IAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQQSGYAIEE-YVKF 4156
+ GL++IHS L +DL+ +L+D +G +DFGL+ + G +EE + KF
Sbjct: 28 LVTGLHYIHSLGILFHDLRPSKVLLDTSGVLKFADFGLS----KVEGENLEELFFKF 186
>00715
Length = 1788
Score = 34.3 bits (77), Expect = 1.1, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 4057 LHQIEGNDFIFLVLTECLGTLN-EIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLV 4115
LH+ E ++ + E +G LN + I N + ++ + A +A GL+++HS +
Sbjct: 139 LHRFEDGAWLAM---EYVGPLNLQTILNDHQQDIDSSMRLSLALQMARGLHYLHSINIVH 309
Query: 4116 NDLKMDNILIDYNGNAVVSDFGLADNL 4142
DLK N L+ + ++DFG L
Sbjct: 310 LDLKPANCLLTRDLKLRIADFGCCHQL 390
>21079
Length = 878
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 4089 LNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNIL-IDYNGNAV-VSDFGLA 4139
L E + + + I G+ ++H++ L DLK +N+L + N N + + DFGLA
Sbjct: 118 LTERDCVHFVRQICSGVGYMHTQSILHLDLKPENVLCVSDNSNQIKIIDFGLA 276
>00300
Length = 2318
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 66/152 (43%)
Frame = -1
Query: 3995 LGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKMLNQCKGSPYVV 4054
+G+G G V A ST + A+K +K +++ Q L ++ EIK+ + V
Sbjct: 1634 IGEGQFGKVYTAVNMSTGELMALK--EMKFQPNDLQQ--LREMCDEIKIFEGIQHENLVK 1467
Query: 4055 NLLHQIEGNDFIFLVLTECLGTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCL 4114
++ ++ + + GT+ E K E L +Y ++I + +H +
Sbjct: 1466 YYGVEVHKDEMLMFMEYCDTGTIEEAAKMGLPEYLIR----RYTREIVLAVNHLHENSIV 1299
Query: 4115 VNDLKMDNILIDYNGNAVVSDFGLADNLPQQS 4146
D+K NI + NG+ + DFG + L +
Sbjct: 1298 HRDIKGANIFLTSNGHVKLGDFGCSVKLKSHT 1203
>06045
Length = 1270
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Frame = -3
Query: 463 REEMDSKDEEITDLKTKIVEKDRIIQQLNNELERRNSDVNDFKKKLQDLKESRNLLDRQA 522
R E+ KDE+I+ L T EKD I L+ + V+ ++ LKE R
Sbjct: 1070 RHEVREKDEQISLLSTTGKEKDEXISPLSAAGKETECTVD-----IESLKEENA---RLQ 915
Query: 523 QELIQLKNENRDLHNNLLELKNSKASFSGGEKEYKQMLNQIREFEISISQLEKNNTLLKE 582
EL ++ E +L ++ EL E+ +++ + ++ ++ L++
Sbjct: 914 SELSSVREEKDELETSIGELDEQH------EEATTHLISARNALQSQLADSQRQVLSLQD 753
Query: 583 ENDHLK------------MQVQDQKQEVREFQEKLALSKKEIQQLKDERDEMMQK 625
E D L+ QV+D KQE++ Q+++A +++ E E+ K
Sbjct: 752 ELDQLRQQPALPDPSPALQQVEDLKQELQTVQQEVASLRQQASSQDAELSELKTK 588
>17253
Length = 483
Score = 33.1 bits (74), Expect = 2.4, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Frame = -1
Query: 4039 QEIKMLNQCKGSPYVVNLLHQIEGNDFIFLVLTE--CLGTLNEIIKNTQNERL------- 4089
+E+ ++ + P VV+ + +D L+L E C G L ++ + +R
Sbjct: 402 RELSIMRKLPRHPNVVSFMGCCTMSDPA-LILMEFCCHGDLLSFLRKRRPDRTVFLTSTA 226
Query: 4090 NELSA---IKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQQS 4146
N+L+A +A +A G+ + + K + D+ N+LI VSDFGL+ + Q+
Sbjct: 225 NDLTARDFFSFALHVARGMAHVANNKIVHRDVAARNVLISERNVCKVSDFGLSRRVGDQN 46
>27546
Length = 426
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = -1
Query: 4065 FIFLVLTECLGTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNIL 4124
FIF+ E L+ I K ++E + +A+ L ++HS DLK +NIL
Sbjct: 252 FIFMRYAEKGDMLSHIKKTGP---IDEAQTKVWFFQMAKALQYLHSHDIAHRDLKCENIL 82
Query: 4125 IDYNGNAVVSDFGLA 4139
+ N ++DFG A
Sbjct: 81 LSKRLNVKIADFGFA 37
>13066
Length = 551
Score = 32.7 bits (73), Expect = 3.2, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = +3
Query: 4051 PYVVNL--LHQIEGNDFIFLVLTECLGTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFI 4108
PY++ + + Q +FIF+ E G L I+ + E A + + L ++
Sbjct: 156 PYIIQIHSILQRXPKNFIFMRFAE-RGDLLTYIQEVG--FVKEKQAKIWFYQMTTALNYL 326
Query: 4109 HSKKCLVNDLKMDNILIDYNGNAVVSDFGLADNLPQQSG 4147
HS DLK +NIL+ + N ++DFG A +SG
Sbjct: 327 HSYDVAHRDLKCENILLSSHFNVKLADFGFACACITESG 443
>08888
Length = 1454
Score = 32.3 bits (72), Expect = 3.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 1561 FCMLHESIRLLEDIINEQNSPSHITPYYYFKGRDSI 1596
FC LH S RL+++ P HI +Y GRDS+
Sbjct: 1227 FCFLHFSSRLVDN*CLHXCQPFHIKRNFYVSGRDSV 1120
>11404
Length = 563
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Frame = +1
Query: 3994 FLGQGAQGLVVLAKEKSTNKRYAIKGIHIKDSKDNVDQVILGQVQQEIKML-----NQCK 4048
+G+G+ G VV A + + N++ AIK I K + L Q Q E+K+L +
Sbjct: 160 LIGKGSFGQVVKAYDHTDNEQVAIKIIKNK-------KPFLNQAQIEVKLLEMMNRHDTD 318
Query: 4049 GSPYVVNLLHQIEGNDFIFLVLTECLGTLNEIIKNTQNERLNELSAIKYAKDIAEGLYFI 4108
Y+V L + LV L ++++NT ++ K+A+ + L F+
Sbjct: 319 NKYYIVRLKRHFMFRSHLCLVFELLSYNLYDLLRNTNFRGVSLNLTRKFAQQLCTALLFL 498
Query: 4109 HSKKCLV--NDLKMDNILI 4125
+ + + DLK +NIL+
Sbjct: 499 ATPEMSIIHCDLKPENILL 555
>20789
Length = 666
Score = 32.3 bits (72), Expect = 4.8, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 65/132 (49%)
Frame = -2
Query: 499 SDVNDFKKKLQDLKESRNLLDRQAQELIQLKNENRDLHNNLLELKNSKASFSGGEKEYKQ 558
S + +K+L L++ +L D E++ LKN L E++ K + ++++
Sbjct: 599 SKIKALEKELTQLRQGSSLAD----EVMVLKNR-------LAEVEEEKGNLQLKLVDFEE 453
Query: 559 MLNQIREFEISISQLEKNNTLLKEENDHLKMQVQDQKQEVREFQEKLALSKKEIQQLKDE 618
I E E I + E+++T + EE D +K ++ E ++ E +A + + ++L +
Sbjct: 452 TRAAIGELEGRIREXEESHTHVTEERDQVKAEMSAVTDERNKYSEIVADLEAQTEKLTSQ 273
Query: 619 RDEMMQKQMEEV 630
E ++ Q+E +
Sbjct: 272 L-ETLKDQVESL 240
>01392
Length = 1806
Score = 31.6 bits (70), Expect = 8.4, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 4089 LNELSAIKYAKDIAEGLYFIHSKKCLVNDLKMDNILIDYNGNAV---VSDFGLADNL 4142
L E A + IA L F+HSK DLK +NIL ++ + V + DF LA +
Sbjct: 1800 LCEREASLVVRHIARALDFLHSKGIAHRDLKPENILCEHLDDVVPVKICDFDLASGI 1630
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00703920__110.m00141EF_hand_family_protein
(686 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01773 53 4e-07
14594 46 5e-05
15966 44 2e-04
08108 43 4e-04
05237 40 0.004
14366 39 0.008
01019 38 0.013
17484 37 0.031
06641 33 0.26
38338 33 0.29
26849 33 0.50
01491 33 0.54
11425 32 0.66
19912 32 1.2
04697 31 1.9
05230 30 2.6
07107 29 5.8
03616 29 5.8
33900 29 6.8
>01773
Length = 1950
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%)
Frame = +1
Query: 520 GIYPTKDELHLFYKRYDRDNDGLLKFSDFSELVTPASIEYAALSKSRVPNYLNPDDGLIN 579
G P D +K D++NDG L+ + EL ++LS S++ + DG
Sbjct: 136 GTGPNTDAYKQLFKEADKNNDGYLEIKELRELFKRNG---SSLSDSQIADTFVFFDGPRG 306
Query: 580 FSLETRRLYKKLLNKIFQAEIEAEYIRQKLSRRPLFSLYDAFLAIDNLENGFITLNDFKA 639
T + K L++I QKL+ + F A D +G++ ++ KA
Sbjct: 307 DKRITFEXFCKGLDQIV-------MFVQKLA--------ELFKAKDKSGDGYLDRDELKA 441
Query: 640 ILQDYGIFVSTNDLQTLIKRYDKNQDNRVTFPEFMNELTPKSPV 683
+L + G + +D+ ++K DKN DN++ F EF++ T K V
Sbjct: 442 LLDESGQKFTADDVSAILKSADKNNDNKICFEEFVDACT*KXTV 573
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 496 FRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDFSELVT 553
F+ DK GY+ + E + L++ G T D++ K D++ND + F +F + T
Sbjct: 385 FKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFVDACT 558
>14594
Length = 1014
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 494 DAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDFSELVT 553
+AFR+FDK GYIS E + ++G T +E+ K D D DG++ + +F ++T
Sbjct: 672 EAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADLDGDGMVNYEEFVTMMT 851
Query: 554 P 554
Sbjct: 852 A 854
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 70/189 (37%)
Frame = +3
Query: 494 DAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDFSELVT 553
+AF +FDK G I+ E + +G PT++EL D D +G + F +F +
Sbjct: 453 EAFSLFDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNGTIDFEEFLHM-- 626
Query: 554 PASIEYAALSKSRVPNYLNPDDGLINFSLETRRLYKKLLNKIFQAEIEAEYIRQKLSRRP 613
+ K+ + E E
Sbjct: 627 -------------------------------------MARKMKDTDCEEE---------- 665
Query: 614 LFSLYDAFLAIDNLENGFITLNDFKAILQDYGIFVSTNDLQTLIKRYDKNQDNRVTFPEF 673
L +AF D NG+I+ + + ++ + G ++ ++ +IK D + D V + EF
Sbjct: 666 ---LREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADLDGDGMVNYEEF 836
Query: 674 MNELTPKSP 682
+ +T K P
Sbjct: 837 VTMMTAK*P 863
>15966
Length = 362
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Frame = +2
Query: 617 LYDAFLAIDNLENGFITLNDFKAILQDYGIFVSTNDLQTLIKRYDKNQDNRVTFPEFMNE 676
L + F A D +G++ ++ KA+L + G + +D+ ++K DKN DN++ F EF++
Sbjct: 140 LAELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFVDA 319
Query: 677 LTPKSPV 683
T K V
Sbjct: 320 CT*KKHV 340
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 494 DAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDFSELVT 553
+ F+ DK GY+ + E + L++ G T D++ K D++ND + F +F + T
Sbjct: 146 ELFKAKDKSGDGYLDRDELKALLDESGQKFTADDVSAILKSADKNNDNKICFEEFVDACT 325
>08108
Length = 818
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Frame = +2
Query: 489 DFNAEDAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDF 548
D + AF +FD G IS E +L G T D+ K+YD D++G + +F
Sbjct: 122 DAECQTAFAVFDTDGSGSISAGELGEALRAQGADITDDQTAELIKKYDSDSNGDIDTDEF 301
Query: 549 SELVTPASIEYAALSKSRVP-NYLNPD-DGLINFSLETRRLYKKLLNKI---FQAEIEA 602
+LV S + A L++S + L+ D DG I S T KK + F A +EA
Sbjct: 302 RKLVEGES-DVARLAQSALMFKSLDADGDGQITASEITEAQGKKTIGATDGQFAAMVEA 475
>05237
Length = 472
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3
Query: 489 DFNAEDAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDF 548
D +AFR+FDK G+IS E + ++G T +E+ + D D DG + + +F
Sbjct: 24 DDELREAFRVFDKDGNGFISASELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 203
Query: 549 SELVT 553
+++T
Sbjct: 204 VKMMT 218
>14366
Length = 499
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 491 NAEDAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDFSE 550
N +AFRIFDK+ G I+ E L +G + +E+ + D DG + ++DF +
Sbjct: 248 NLREAFRIFDKEGNGMINAAELRHVLTHLGEKLSDEEVDEMIREADISGDGQVSYNDFVK 69
Query: 551 LV 552
++
Sbjct: 68 VM 63
>01019
Length = 1705
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 490 FNAEDAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDFS 549
NAE +FDK G+IS E + ++G T +E+ + D D DG + + +F
Sbjct: 19 INAEWPLLVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 198
Query: 550 ELVT 553
++T
Sbjct: 199 TMMT 210
>17484
Length = 471
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = -3
Query: 489 DFNAEDAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDF 548
D DAFR FD+ G IS E ++ +G + ++ + D+D DG + + +F
Sbjct: 274 DKEMRDAFRAFDQNGDGVISISELRQAMAKMGQKLSDADVESIIRDVDKDGDGFVNYEEF 95
Query: 549 SELV 552
++ +
Sbjct: 94 TKFI 83
>06641
Length = 726
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 494 DAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELH-LFYKRYDRDNDGLLKFSDFSELV 552
DAF IFD +A + E + +G P++ ELH + + + + G ++F F ++
Sbjct: 205 DAFDIFDHEANKTVDVREVGTIIRSLGCCPSEAELHDMLAEIEEEEPTGYIRFEKFLPMM 384
Query: 553 TPASIE--YAALSKSRV 567
T +E Y A+ + ++
Sbjct: 385 TKVLMERRYKAVPEDQI 435
>38338
Length = 463
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -2
Query: 480 LKNQLSFRHDFNAEDAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDN 539
+ +QL+ ++AF +FDK G I+ E + +G PT+ EL D D
Sbjct: 198 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 19
Query: 540 DGLLKF 545
+G + F
Sbjct: 18 NGTIDF 1
>26849
Length = 649
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 607 QKLSRRP--LFSLYDAFLAIDNLENGFITLNDFKAILQDYGIFVSTNDLQTLIKRYDKNQ 664
Q LSR P + L AF +D + ++L +FK + D I ++ D++ + R+D +
Sbjct: 137 QCLSRGPTGILGLARAFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIEDMFYRFDNDG 316
Query: 665 DNRVTFPEFM 674
+ + EF+
Sbjct: 317 NGTINMTEFL 346
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 495 AFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDF 548
AFR+ DK +S EF+ + D+ I + ++ + R+D D +G + ++F
Sbjct: 182 AFRVMDKDGSKVLSLEEFKKGILDMHIDINEADIEDMFYRFDNDGNGTINMTEF 343
>01491
Length = 1707
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Frame = +1
Query: 495 AFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDFSELVTP 554
AFR+ DK +G I + L +G T+DE+ D D G + + +F L+
Sbjct: 361 AFRVLDKGNKGVIPVEDLRWLLKSLGDDLTEDEIEDMIVETDTDGSGTVDYEEFRTLMNS 540
Query: 555 ASIEYAALSKSRVPNYLNPDDGLINFS 581
A +RV +++ PDD +I +
Sbjct: 541 A*RHLP----TRVSHHI-PDDVIITVA 606
>11425
Length = 599
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 494 DAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYD--RDNDGLLKFSDFSEL 551
+ F+ FD++ +G+IS E L +G + DE+ K D D +G +K+ DF +
Sbjct: 319 EGFKTFDREGQGFISAAELRHLLTGLGERLSDDEVDELIKATDTREDLEGNVKYEDFIQK 140
Query: 552 V 552
V
Sbjct: 139 V 137
>19912
Length = 865
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 494 DAFRIFDKKARGYISKFEFELSLNDIGIYPTKDELHLFYKRYDRDNDGLLKFSDF 548
D F FDK+ I++ +F L + I DE+ DRD DG + +S+
Sbjct: 680 DFFNKFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLDELDRDGDGEINYSEL 844
>04697
Length = 559
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +1
Query: 621 FLAIDNLENGFITLNDFKAILQDYGIFVSTNDLQTLIKRYDKNQDNRVTFPEFM 674
F ++D GF+T+ND + + G V+ + L ++ D +++ +V EF+
Sbjct: 379 FKSLDYQNKGFVTVNDLRRYFKKMGEKVTEDQLHDILSEVDLSRNAQVDLGEFL 540
>05230
Length = 843
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 148 FRRLDQTKTGQLSATDLIDFLEQNKILVSHKEAIQLLRILDLNGDGRVTYADF 200
F + D +G S D+I+ LE I ++ ++ + +D N DG++ YADF
Sbjct: 623 FAQFDTDGSGWASREDVIEGLENIGITITPDLRAKI-KAMDGNKDGKINYADF 468
>07107
Length = 797
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 51 WKQISISQNKLSDRPVKIKINLDKQNFICINNYQAIIKNKQTYK 94
WK + I+ N RP I N+ NF+ I+N + I TY+
Sbjct: 171 WKIVHINVNLSCLRPNMIHTNISNMNFLFIHNVECISFIHCTYR 40
>03616
Length = 2372
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 21/144 (14%)
Frame = +2
Query: 78 ICINNYQAIIKNKQTYKNYFLDFEEEKQMLQYRTLNRLSNLIQAVAEGEQKT-------- 129
I I N++ +I N + ++ EE T+N L + G++
Sbjct: 632 IEIFNHRFVITNADAFVLSYM--EEHANQFPPATVNSLKEKLGQTXPGKEMVKGGPMKVK 805
Query: 130 -------EVIRQVLAEQRHF------EPQSAFRRLDQTKTGQLSATDLIDFLEQNKILVS 176
+++RQV A+ + F R D+ +TG +S ++ D + ++ V
Sbjct: 806 RSQGDLDQLVRQVRAQLKKIAITDKSRVDEMFLRYDRDRTGYISVENMRDLCRRLQLPVD 985
Query: 177 HKEAIQLLRILDLNGDGRVTYADF 200
+ L++ ++ +GR++ DF
Sbjct: 986 DDVILALVQQCTMDQEGRISLEDF 1057
>33900
Length = 333
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 490 FNAEDAFRIFDKKARGYISKFEFELSLNDIGIY 522
FNAE F F + GY+S F LND G +
Sbjct: 315 FNAEQEFNRFYHEXNGYMSGHGFLSGLNDFGAW 217
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00494070__3711.m00078Zinc_finger,_ZZ_type_family_protein
(692 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07471 52 7e-07
38263 48 2e-05
14299 44 2e-04
37466 35 0.070
>07471
Length = 1673
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = -3
Query: 228 VKHEGFICDGCEANPIIGVRYKCVKCPDYDICEKCEANGVHSH---HAFLKIRKP 279
V HE ICD C I+G RY C CP+YD+CE CE H H F+K+R+P
Sbjct: 1455 VVHEDIICDCCNGE-IVGTRYICGNCPNYDLCEACENIQPSFHDRSHVFIKLRRP 1294
>38263
Length = 368
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 229 KHEGFICDGCEANPIIGVRYKCVKCPDYDICEKC-EANGVHSHH 271
+HEG CD C G RYKC+ C DYD+C C EA + H
Sbjct: 191 RHEGVSCDSCLKGNFRGRRYKCLICYDYDLCATCYEAGATTTRH 322
>14299
Length = 716
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 229 KHEGFICDGCEANPIIGVRYKCVKCPDYDICEKCEANGV 267
+HEG CD C G RYKC+ C DYD+C C G
Sbjct: 252 RHEGVSCDSCLKGNFRGRRYKCLICYDYDLCATCYEAGA 368
>37466
Length = 593
Score = 35.4 bits (80), Expect = 0.070, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 235 CDGCEANPIIGVRYKCVKCPDYDICEKCEANGVHSH 270
C+ C+A+ + RY CV C D+D+C C H H
Sbjct: 498 CNNCKAH--VETRYHCVVCEDFDLCVSCYKRDGHQH 397
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00304360__3696.m00025cyclic_nucleotide-
binding_domain_containing_protein
(2514 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
18204 54 1e-06
20517 53 2e-06
08195 48 4e-05
27034 44 6e-04
>18204
Length = 429
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 52/108 (48%)
Frame = -1
Query: 2010 SFGEIALMTKERRTATMVCQEETHLMVLSKEGFDKIIGSFQQQILREKLEFLRKFQFLDS 2069
+FGE+A++ RTA++ + + VL ++ F I+ Q E + FL+ L
Sbjct: 429 AFGELAILYNCTRTASVKAVTDVKVWVLDRQMFQAIMMKTGLQRREENIRFLKSVSVLRD 250
Query: 2070 LPTSQLMSLLHYFKINNFTQKTVVYNEGDEADNIYFIKSGEVEVLKKV 2117
LP+ +L + +I+ F + + EG D + I GEV V + V
Sbjct: 249 LPSDKLAKIADVLEIDFFHEGEFIIREGCTGDTFFLINKGEVRVTQTV 106
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%)
Frame = -1
Query: 568 AFGEIALMTKERRTASMVCKEDSHLMVLSKEGFEKILGSYQQSIVKQKVSFLKSFSFFEK 627
AFGE+A++ RTAS+ D + VL ++ F+ I+ ++ + FLKS S
Sbjct: 429 AFGELAILYNCTRTASVKAVTDVKVWVLDRQMFQAIMMKTGLQRREENIRFLKSVSVLRD 250
Query: 628 VANSQLMSFLHCFKILTFTPKSTIYLENDPANEIYLIKSGEVQIQKQIYVEQKLQQ 683
+ + +L +I F I E + +LI GEV++ + + ++ Q+
Sbjct: 249 LPSDKLAKIADVLEIDFFHEGEFIIREGCTGDTFFLINKGEVRVTQTVAGHEEPQE 82
>20517
Length = 749
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/212 (21%), Positives = 98/212 (46%), Gaps = 18/212 (8%)
Frame = +3
Query: 548 QYQQTYFPDMNMVKIYTPGEAFGEIALMTKERRTASMVCKEDSHLMVLSKEGFEKILGSY 607
Q+++ Y +V + G +FGE+A++T RR A++ + L+ +S + FE I +
Sbjct: 57 QFERQYSTTRTLVTL-DQGMSFGELAVITGSRRQATVSTMTEVELLCISAKDFEDIFMAG 233
Query: 608 QQSIVKQ--KVSFLKSFSFFEKVANSQLMSFLHCFKILTFTPKSTIYLENDPANEIYLIK 665
+ I+ FL+S F + QL H F + +++ ++ IY++K
Sbjct: 234 GRKIITDPDHNKFLRSVDFLKAWPVQQLAQHPHACMFHYFNRGQVLVRDSNNSDWIYIVK 413
Query: 666 SGEVQIQKQIY-------------VEQKLQQQLSREANSQSMDQTNILFNKHLQKNRK-- 710
SG + + K+++ E + R+ ++ ++ ++F ++ NR+
Sbjct: 414 SGSLSVMKKLHHATATDRHSTEGKSEVAEASKSKRKKRGRTGSESPVMFRNQMEANRRLE 593
Query: 711 QSQKRIIQIKS-LGPVQYFGQDEILSQEPKRL 741
Q+ + +K LG V Y D+++S+ R+
Sbjct: 594 QTLPGVFNVKERLGLVDY---DKVISEYRSRV 680
>08195
Length = 2165
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Frame = -3
Query: 2011 FGEIALMTKERRTATMVCQEETHLMVLSKEGFDKII--GSFQQQILREKLEFLRKFQFLD 2068
FGE+ALM R AT++ + L + F +I+ +FQ++ E L L L
Sbjct: 1419 FGELALMYNMPRAATIIASSTGTIWALDRTTFRRIVLKTAFQKRKKYESL--LESVPLLK 1246
Query: 2069 SLPTSQLMSLLHYFKINNFTQKTVVYNEGDEADNIYFIKSGEVEV 2113
SL + M++ + + + +GD AD +YF++SG+V +
Sbjct: 1245 SLDLYERMNVADALQTRTYEDGVQIIKQGDAADVMYFVESGQVRI 1111
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 48/103 (46%)
Frame = -3
Query: 569 FGEIALMTKERRTASMVCKEDSHLMVLSKEGFEKILGSYQQSIVKQKVSFLKSFSFFEKV 628
FGE+ALM R A+++ + L + F +I+ K+ S L+S + +
Sbjct: 1419 FGELALMYNMPRAATIIASSTGTIWALDRTTFRRIVLKTAFQKRKKYESLLESVPLLKSL 1240
Query: 629 ANSQLMSFLHCFKILTFTPKSTIYLENDPANEIYLIKSGEVQI 671
+ M+ + T+ I + D A+ +Y ++SG+V+I
Sbjct: 1239 DLYERMNVADALQTRTYEDGVQIIKQGDAADVMYFVESGQVRI 1111
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 560 VKIYTPGEAFGEIALMTKERRTASMVCKEDSHLMVLSKEGFEKILG 605
V + G FGE+AL+T + R AS + VL FE+++G
Sbjct: 1062 VTVLEKGGYFGELALITHQPRAASAYAQGTVKCAVLDVHAFERLMG 925
>27034
Length = 437
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Frame = +1
Query: 2007 AGESFGEIALMTKERRTATMV----CQEETHLMVLSKEGFDKIIGSFQQQILREKLEFL- 2061
G+ FG + + + T ++ L+ +S + K+I QQ+ EKL L
Sbjct: 67 VGDCFGTLQTIKGKAPTTRLLSVKTVDTNCELLKISISDYSKVIVQIQQREQTEKLNLLM 246
Query: 2062 --RKFQFLDSLPTSQLMSLLHYFKINNFTQKTVVYNEGDEADNIYFIKSGEVEVLKKV 2117
+++ P Q+ SL+ + ++ TV+ +EG +A I FIKSGE VL++V
Sbjct: 247 SCAQYKMWPRQPLQQVASLIEWI---SYPPNTVIVSEGYKAPFIGFIKSGECHVLRQV 411
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00643530__92.m00165hypothetical_protein
(583 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09444 51 2e-06
10571 31 1.5
>09444
Length = 1248
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 38/87 (43%)
Frame = +2
Query: 166 VKNWPNTIQAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQANVKKEIIEKANKQIYEGN 225
VK+W NT+ +QA +K IEKA Q Y
Sbjct: 266 VKSWGNTLAGQRQHKLVARKEREDRDEAQRLHLDVEEAQFQATQRKAAIEKAKTQQYYQT 445
Query: 226 DRVKAFQSKLLLVDTLQEREGQIELKK 252
DRVKAF S L L + L+ERE Q+EL K
Sbjct: 446 DRVKAFHSALQLSEVLKEREAQVELNK 526
>10571
Length = 1025
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 23 CKSEIIISYSKRGKQYKQTKQKINKLLLTKSSQKQN 58
C++++++ Y+ GKQ KQT KI+ L + S + N
Sbjct: 797 CRTDVVVDYTHYGKQ*KQTFIKISSLCTSIQSLRDN 690
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00495900__3715.m00001Leucine_Rich_Repeat_family_protein
(3322 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12721 52 5e-06
13212 49 4e-05
14420 44 0.002
12786 43 0.002
13592 40 0.016
37602 37 0.10
31725 36 0.29
19761 35 0.63
03240 34 0.94
01060 34 0.97
07836 34 1.1
29581 34 1.1
21079 33 1.5
01756 33 2.0
31489 32 3.7
16708 32 4.7
18191 32 5.4
>12721
Length = 821
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 57/249 (22%), Positives = 108/249 (43%), Gaps = 2/249 (0%)
Frame = +1
Query: 1553 NEKNQAILDKVKVILEEQKFTDIEM-IGRGSYGLVLKVKNWQGFERAIKVQLINAYNQDQ 1611
+E+ +A L V + + F D M IG GS G+V + G + A+K + + +
Sbjct: 34 HEQFRAALQMVVTPGDPRTFLDDFMKIGEGSTGIVCIATSRDGRQMAVKKMDLRKQQRRE 213
Query: 1612 FKDGEFKIGKYLTDDGTENLFGQIITLHNIYIIQDTESEHMICLMEMELAESSLSKQINN 1671
E + + D N I+ ++N Y++ D + +ME + NN
Sbjct: 214 LLFNEVVV---MRDYHHPN----IVEMYNSYLVND----ELWVVMEFMEGGALTDIVTNN 360
Query: 1672 RLEKGVMIDPFSQEEFIFICRWCIQTLVRIHNSGCVHRDIKTDNI-LKMGNNFLFTDFGE 1730
R++ + + +CR C++ L +H +G +HRDIK+D+I L DFG
Sbjct: 361 RMD---------EVQIATVCRACLKALAFLHANGVIHRDIKSDSILLSHDGKVKLXDFG- 510
Query: 1731 SEYVYNLKNFHQKQTDTFRVKQRFSGTQTYLSPLLRECYDNLKNNQSDQLYHDPFKSDIY 1790
F + T + ++ GT +++P + +L + P + DI+
Sbjct: 511 ---------FCAQVTQDLQKRKSLVGTPYWMAPEV-----------ISRLPYGP-EVDIW 627
Query: 1791 SLGLVFLQI 1799
SLG++ +++
Sbjct: 628 SLGIMVMEM 654
>13212
Length = 1067
Score = 48.9 bits (115), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Frame = -1
Query: 1677 VMID---PFSQEEFIFICRWCIQTLVRIHNSGCVHRDIKTDNI-LKMGNNFLFTDFGESE 1732
+M+D P ++ + ++C L +H +HRDIK N+ L + DFG S
Sbjct: 1013 IMVDLEKPMTEAQICYVCHEMCMALDFLHRHHVIHRDIKAGNVLLTIDGEVKLADFGVS- 837
Query: 1733 YVYNLKNFHQKQTDTFRVKQRFSGTQTYLSPLLRECYDNLKNNQSDQLYHDPFKSDIYSL 1792
K T T + + F GT +++P + C + LK+ D FK+DI+SL
Sbjct: 836 ---------AKNTQTQQKRDTFIGTPYWMAPEVVLC-ETLKDTPYD------FKADIWSL 705
Query: 1793 GLVFLQ 1798
G+ ++
Sbjct: 704 GVTLIE 687
>14420
Length = 528
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 1690 ICRWCIQTLVRIHNSGCVHRDIKTDNI-LKMGNNFLFTDFG 1729
+CR C+Q L +H + +HRDIK+DNI L M + TDFG
Sbjct: 212 VCRECLQALEFLHENQVIHRDIKSDNILLGMDGSVKLTDFG 334
>12786
Length = 460
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Frame = -3
Query: 1689 FICRWCIQTLVRIHNSGCVHRDIKTDNILKMGNNFLFTDFGESEYVYNLKNFHQKQTDTF 1748
F R ++ + +HN G +H D+K N + + N DFG + + +Q T
Sbjct: 398 FYWREMLRAVKALHNEGVIHSDLKPANFMLVAGNLKLIDFGIANTL--------QQDKTS 243
Query: 1749 RVKQRFSGTQTYLSP--LLRECYDNLKNNQSDQ------LYHDPFKSDIYSLGLVFLQI 1799
+K GT +Y+SP ++ C D+ ++ + Y +SD++SLG + +
Sbjct: 242 VLKDSRVGTPSYMSPEAIMAACDDSADDSMEEDGHRTKPKYKVGVRSDVWSLGCILYNM 66
>13592
Length = 980
Score = 40.0 bits (92), Expect = 0.016, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = +2
Query: 1698 LVRIHNSGCVHRDIKTDNILKM--GNNFLFTDFGESEYVYNLKNFHQKQTDTFRVKQRFS 1755
+ +H G VHRDIKT NI + N+ DFG + + Q T Q +
Sbjct: 320 VAELHKHGIVHRDIKTANIFLVDGSNSLKLGDFGSAVKI-------QAHTTVPGELQGYV 478
Query: 1756 GTQTYLSPLLRECYDNLKNNQSDQLYHDPFKSDIYSLGLVFLQI 1799
GTQ Y++P E + ++ +L +DI+S+G V +++
Sbjct: 479 GTQAYMAP---EVFTKTNSDGHGRL------ADIWSVGCVVVEM 583
>37602
Length = 804
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 1681 PFSQEEFIFICRWCIQTLVRIHNSGCVHRDIKTDNIL 1717
P ++ + F+CR ++ L +H G +HRDIK NIL
Sbjct: 231 PLTEPQIAFVCRETLKGLHYLHRRGKMHRDIKGANIL 121
>31725
Length = 1230
Score = 35.8 bits (81), Expect = 0.29, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = -2
Query: 1909 KYSIKYMEYEGETLKIGDKILRHGRGKLFRHEQNTKTIIYEGYWSKDLPHGQGKFSKIFQ 1968
+Y ++ M Y+GE + LRHG G H N + Y GYW ++ HG+GKF +F+
Sbjct: 1121 QYPMRNM-YDGEFVNG----LRHGFGTF--HYANGAS--YSGYWKNNMKHGKGKF--MFK 975
Query: 1969 DDWEYEG 1975
+ YEG
Sbjct: 974 NGRIYEG 954
>19761
Length = 473
Score = 34.7 bits (78), Expect = 0.63, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Frame = -3
Query: 1686 EFIFICRWCIQT-----LVRIHNSGCVHRDIKTDNI-LKMGNNFLFTDFGESEYVYNLKN 1739
E + +C W +QT + H +HRD+K NI + + D G + + +
Sbjct: 426 ERLIVC-WLMQTASALNYMHTHTPVILHRDLKPQNIYVTEKGDVRLGDLGLARKLTGPAD 250
Query: 1740 FHQKQTDTFRVKQRFSGTQTYLSPLLRECYDNLKNNQSDQLYHDPFKSDIYSLGLVFLQI 1799
F Q GT YLSP + S Q Y+ KSDI+SLG VF I
Sbjct: 249 FATSQV----------GTIMYLSPEIL----------SQQPYNS--KSDIWSLGCVFYDI 136
>03240
Length = 1683
Score = 34.3 bits (77), Expect = 0.94, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 1695 IQTLVRIHNSGCVHRDIKTDNILKMGNNFL-FTDFG 1729
+Q + +H G +HRDIK DNIL N + TDFG
Sbjct: 961 VQAIESVHRMGFIHRDIKPDNILIDRNGHIKLTDFG 854
>01060
Length = 1800
Score = 34.3 bits (77), Expect = 0.97, Method: Composition-based stats.
Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 13/206 (6%)
Frame = +1
Query: 1572 FTDIEMIGRGSYGLVLKVKNWQGFERAIKVQLINAYNQDQFKDGEFKIGKYLTDDGTENL 1631
TD + IG G+YG+V K ++ RA +L A + + + E DG +
Sbjct: 79 LTDFQKIGEGTYGVVYKCRH-----RATGRKL--AMKKIRLRGSE---------DGVPS- 207
Query: 1632 FGQIITLHNIYIIQDTESEHMICLMEMELAESSLS----------KQINNRLEKGVMIDP 1681
+ I ++++ +++CL ++ + + L K ++ +GV++D
Sbjct: 208 ----SAIREIAMLRELRHTNIVCLEDVIMEDERLFLVFEFLSMDLKMYIDKFPEGVVLDR 375
Query: 1682 FSQEEFIFICRWCIQTLVRIHNSGCVHRDIKTDNIL-KMGNNFLFTDFGESE-YVYNLKN 1739
+ ++F + + H VHRD+K N+L DFG + + ++
Sbjct: 376 RLVKSYVF---QIVTGIXFCHQRRIVHRDLKPQNLLINHTGAIKIADFGMARTFALPVRA 546
Query: 1740 F-HQKQTDTFRVKQRFSGTQTYLSPL 1764
+ H+ T +R + G Y +P+
Sbjct: 547 YTHEVVTLWYRAPEILMGASKYSTPV 624
>07836
Length = 1478
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = -1
Query: 1708 HRDIKTDNIL-KMGNNFLFTDFGESEYVYNLKNFHQKQTDTFRVKQRFSGTQTYLSPLLR 1766
HRDIK+ NIL K D G + + N + D GT+ Y++P +
Sbjct: 1163 HRDIKSKNILVKKNGTCCIADLGLAVRYISESN----EVDV--APNPRQGTKRYMAPEVL 1002
Query: 1767 ECYDNLKNNQSDQLYHDPFK-SDIYSLGLVFLQI 1799
E N+KN D FK +D+Y+ GLV +I
Sbjct: 1001 EMLLNVKN-------FDAFKQADMYAFGLVMWEI 921
>29581
Length = 1278
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Frame = -2
Query: 1635 IITLHNIYIIQDTESEHMICLMEMELAESSLSKQINNRLEKGVMIDPFSQEEFIFICRWC 1694
I+ L + + + +S ++ ME E L+ ++N M PFS+ + I
Sbjct: 1169 IVQLQEVVVGKSLDSLFLV----MEYCEQDLASLLDN------MPAPFSESQVKCIVLQL 1020
Query: 1695 IQTLVRIHNSGCVHRDIKTDNILKMGNNFL-FTDFGESEYVYNLKNFHQKQ--------T 1745
++ L +H + +HRD+K N+L + DFG + +N+ + Q T
Sbjct: 1019 LKGLRYLHEAFIIHRDLKVSNLLMTDKGCVKIADFGLA------RNYGKPQKPMTPKVVT 858
Query: 1746 DTFRVKQRFSGTQTY 1760
+R + G++T+
Sbjct: 857 LWYRAPELLFGSKTH 813
>21079
Length = 878
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Frame = +1
Query: 1676 GVMIDPFSQEEFIFICRWCIQTLVRI-------HNSGCVHRDIKTDNILKMGNN---FLF 1725
G + + +++F+ R C+ + +I H +H D+K +N+L + +N
Sbjct: 79 GELFERVIRDDFVLTERDCVHFVRQICSGVGYMHTQSILHLDLKPENVLCVSDNSNQIKI 258
Query: 1726 TDFGESEYVYNLKNFHQKQTDTFRVKQRFSGTQTYLSPLLRECYDNLKNNQSDQLYHDPF 1785
DFG L F+ K D+ +V GT +++P + YD + F
Sbjct: 259 IDFG-------LARFY-KPGDSLQV---LFGTPEFIAPEVVN-YDEIN-----------F 369
Query: 1786 KSDIYSLGLVFLQIQLYMKGMNKAEITAILK 1816
+D++S+G++ + + G++ + +T +L+
Sbjct: 370 TTDMWSIGVI---CYILLSGLSPSRVTTMLR 453
>01756
Length = 1858
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 20/182 (10%)
Frame = -3
Query: 1568 EEQKFTDIEMIGRGSYGLVLKVKNWQGFERAIKVQLINAYNQDQFKDGEFKIGKYLTDDG 1627
E+ K+ + IG+G++G V K R K + + A + K L D+
Sbjct: 1748 EDAKYEKLAKIGQGTFGEVFKA-------RCKKTKQVVA------------MKKVLMDNE 1626
Query: 1628 TENLFGQIITLHNIYIIQDTESEHMICLMEM-------------------ELAESSLSKQ 1668
E I L I I+Q E+++ L+E+ E E L+
Sbjct: 1625 KEGF--PITALREIKILQLLNHENVVDLIEICSTKATSANRYKSMFYLVFEFCEHDLAGL 1452
Query: 1669 INNRLEKGVMIDPFSQEEFIFICRWCIQTLVRIHNSGCVHRDIKTDNILKMGNNFL-FTD 1727
++N M F+ E + + + L IH + +HRD+K NIL L D
Sbjct: 1451 LSN------MSVVFNLPEIKEVMKQLMNGLYYIHRNKILHRDMKAANILITKQGVLKLAD 1290
Query: 1728 FG 1729
FG
Sbjct: 1289 FG 1284
>31489
Length = 329
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 1681 PFSQEEFIFICRWCIQTLVRIHNSGCVHRDIKTDNILKM 1719
P ++E + ++ L IH++ VHRD+K N+L M
Sbjct: 153 PLTEEHIRYFLYQILRGLKYIHSANVVHRDLKPSNLLSM 269
>16708
Length = 1397
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Frame = -1
Query: 1698 LVRIHNSGCVHRDIKTDNIL-KMGNNFLFTDFGESEY--VY------------NLKNFHQ 1742
L IH G VH D+K DN+L N TD+G ++ VY N + F+
Sbjct: 1055 LEHIHELGVVHMDVKADNVLVDAHGNCKLTDYGIAQLYKVYPAPTETHSSGCTNKRTFYT 876
Query: 1743 KQTDTFRVKQRFS 1755
+ T +RFS
Sbjct: 875 RPPATMTPSERFS 837
>18191
Length = 460
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +3
Query: 2359 YLQISHTSEIYFDSDLLEFVSKQKEEDFKQAIRLLSNKKIFLNIVSEQSLEYIIKFFEK- 2417
Y QIS T Y+ S ++ FV +L+N+ IFL + L YI +FF
Sbjct: 3 YCQISQT---YYISYMMTFV-------------MLNNRIIFLFXLCSYLLGYIFRFFSCS 134
Query: 2418 -RNNLDIRLFSLTYPEYQLEKSVIVQIKKQDKHTK 2451
+ + F Y Y L++ ++ ++ KH K
Sbjct: 135 LYGSFVLSTFIKQYGLYHLKRYIVKYVRSGIKHVK 239
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00241740__3706.m00140Thioredoxin_family_protein
(113 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30644 33 6e-06
15159 45 8e-06
06936 42 4e-05
28335 40 3e-04
18455 39 4e-04
11167 37 0.002
03582 37 0.002
35861 30 0.30
28475 28 0.99
07257 28 1.3
14298 27 1.4
29801 27 1.7
27754 26 3.2
02158 26 3.2
07779 26 3.2
04510 26 3.9
08605 25 5.6
31608 25 6.4
18943 25 6.5
21509 25 7.0
>30644
Length = 845
Score = 33.1 bits (74), Expect(2) = 6e-06, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 3 IIHIKDQAGFDKEVLQAKNPVLVDFYADWCPPCRALGKVFEQLIQESNG 51
++HI G K + + K+ LV FYA WC C+ + F E G
Sbjct: 477 VVHIDTDDGLTKLLKKDKSAALVMFYAPWCGYCKRMKPDFAAAATEVKG 331
Score = 31.6 bits (70), Expect(2) = 6e-06, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -1
Query: 51 GWNIVKLNCDDAGVKSIAQSHSVSGIPAVFFYNQGKL 87
G N+V ++ D +K + ++++G P ++++ +GKL
Sbjct: 329 GANLVGIDVDKPHMKGVQAQYNITGFPTLYYFEKGKL 219
Score = 26.9 bits (58), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 2 SIIHIKDQAGFDKEVLQAKNPVLVDFYADWCPPCR 36
+ H++D + FD + L+ VLV FYA WC C+
Sbjct: 107 EVAHLED-SNFD-DFLKQHPSVLVMFYAPWCGHCK 9
>15159
Length = 1945
Score = 44.7 bits (104), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 1 MSIIHIKDQAGFDKEVLQAKNPVLVDFYADWCPPCRALGKVFEQLIQESNGWNIVK-LNC 59
M +I I F+K +Q V+VDF+A WC PC+ + + +E VK ++
Sbjct: 75 MGVIKISSADDFEK-AIQGGQLVVVDFHATWCGPCKVIAPKLAKWSEEDRFKETVKIISV 251
Query: 60 DDAGVKSIAQSHSVSGIPAVFFYNQGK 86
D ++ +A +S +P FF K
Sbjct: 252 DVDELEDLAGEQGISAMPTFFFLEMEK 332
>06936
Length = 2198
Score = 42.4 bits (98), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Frame = +3
Query: 12 FDKEVLQAKNPVLVDFYADWCPPCRALGKVFEQLIQESNGWNIVKLNCDDAGVKSIAQSH 71
F++ V + VL++FYA WC C+ L +++L ++ + + DA + +
Sbjct: 1215 FEELVNDPEKDVLIEFYAPWCGHCKTLAPKYDELAEKLKNEPEIVIAKMDATANDVPPPY 1394
Query: 72 SVSGIPAVFFYNQGKLDAAHSFTG 95
V G P ++F +G + + G
Sbjct: 1395 DVRGFPTLYFAPKGSKSSPKKYEG 1466
Score = 32.7 bits (73), Expect = 0.035, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +3
Query: 14 KEVLQAKNPVLVDFYADWCPPCRALGKVFE----QLIQESNGWNIVKLNCDDAGVKSIAQ 69
+ ++ + +LV+F+A WC C+ L +E L++ + K++C + +
Sbjct: 177 QSTIEKHSLMLVEFFAPWCGHCKKLAPQYELAATALLKNDPPVPLAKVDCTEE--TDVCS 350
Query: 70 SHSVSGIPAVFFYNQGKLD 88
+ VSG P + + G+++
Sbjct: 351 KYGVSGYPTLKVFRGGEVN 407
>28335
Length = 601
Score = 39.7 bits (91), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = -2
Query: 12 FDKEVLQAKNPVLVDFYADWCPPCRALGKVFEQLIQESNGWNIVKLNCDDAGVKSIAQSH 71
FDK V K VL++FYA WC C+ L + +L + DA +
Sbjct: 522 FDKIVNNPKKDVLIEFYAPWCGHCQQLEPKYNELATLLKDEPDIVXAKIDATANDTPTPY 343
Query: 72 SVSGIPAVFF 81
V G PA++F
Sbjct: 342 EVKGFPAIYF 313
>18455
Length = 499
Score = 39.3 bits (90), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 24 LVDFYADWCPPCRALGKVFEQ----LIQESNGWNIVKLNCDDAGVKSIAQSHSVSGIPAV 79
V F+A WC C+ L ++E+ LI+E + I K++C +SI Q V G P +
Sbjct: 200 FVKFFAPWCSHCQRLAPIWEELAKALIKEPSA-TISKIDC--TQYRSICQDFEVKGYPTL 370
Query: 80 FFYNQGK 86
+ GK
Sbjct: 371 LWIEDGK 391
>11167
Length = 485
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Frame = -3
Query: 23 VLVDFYADWCPPCRALGKVFEQLIQESNGWNIVKLNCDDAGVKSIAQSHSVSGIPAVFFY 82
V+V F+ DW P C + V ++L + + N+V + + ++Q +++ +P F +
Sbjct: 480 VVVHFWTDWAPQCAQMDDVMKELASDMHYVNVVFVRVAAEDLADVSQRYNIVAVPT-FIF 304
Query: 83 NQGKLDAAHSFTGFDQGKLQKAIDHATS 110
+GK D G +L + + S
Sbjct: 303 LKGK-DQVDRIDGAKAAELTEKVGRHVS 223
>03582
Length = 1967
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 4 IHIKDQAGFDKEVLQAKNPVLVDFYADWCPPCRALGKVFEQLIQESNGWNI-VKLNCDDA 62
+++ FD V + VLV+FYA WC C+AL + + Q N VKL DA
Sbjct: 119 VYVLTTKNFDSFV-KENEFVLVEFYAPWCGHCKALAPEYAKAAQTLKDENSDVKLAKVDA 295
Query: 63 GVK-SIAQSHSVSGIPAVFF 81
++ S+ ++ V G P + F
Sbjct: 296 TIETSLGENMGVRGYPTLKF 355
Score = 30.4 bits (67), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 14 KEV-LQAKNPVLVDFYADWCPPCRALGKVFEQL 45
KEV L V V+FYA WC C+ L ++++L
Sbjct: 1158 KEVALDKTKGVFVEFYAPWCGHCKQLAPIWDEL 1256
>35861
Length = 850
Score = 29.6 bits (65), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 12 FDKEVLQAKNPVLVDFYADWCPPCRALGKVFEQL 45
F + L V V+FYA WC C+ L ++++L
Sbjct: 600 FKEVALDKSKDVFVEFYAPWCGHCKQLVPIWDEL 701
>28475
Length = 394
Score = 28.1 bits (61), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 31 WCPPCRALGKVFEQLIQESNGWNIVKLNCDDA 62
WCPPC F S+ WN +L CDDA
Sbjct: 310 WCPPCSPQSASF-----ASSSWNYARL-CDDA 233
>07257
Length = 1477
Score = 27.7 bits (60), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Frame = -3
Query: 23 VLVDFYADWC-------PPCRALGKVFEQLIQESNGWNIVKLNCDDAGVKSIAQSHSVSG 75
VLV FYA WC P AL + F QL L D ++
Sbjct: 1289 VLVMFYAPWCHFCANTAPHYNALARAFPQL---------EVLAVDTVHFSNLNARFGTVA 1137
Query: 76 IPAVFFYNQGKLDAAHSFTGFDQGKLQKAIDHATSL 111
+P + ++Q + + T D + I + T L
Sbjct: 1136 VPNIMLFHQSRSAVRFNHTERDFHTFLQFIANTTGL 1029
>14298
Length = 425
Score = 27.3 bits (59), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = -1
Query: 26 DFYADWCPPCRALGKVFEQL--IQESNGWN 53
+FY ++CP C ++G+V Q+ ++++ WN
Sbjct: 386 EFYREFCPTCLSVGEVH*QIETLKDTGVWN 297
>29801
Length = 424
Score = 26.9 bits (58), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = -1
Query: 26 DFYADWCPPCRALGKVFEQL--IQESNGWN 53
+FY ++CP C ++G+V Q+ ++++ WN
Sbjct: 388 EFYREFCPNCLSVGEVH*QIETLKDTEVWN 299
>27754
Length = 429
Score = 26.2 bits (56), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +3
Query: 31 WCPPCRALGKVFEQLIQESNGWNIVKLNCDDAGVKSIAQSHSVSGIPAVFF 81
WCPPCRA + ++ W I + + +S S P+V F
Sbjct: 240 WCPPCRARSWYPAPFPRRTSPWAISSFG------RPMLKSSLTSMEPSVMF 374
>02158
Length = 871
Score = 26.2 bits (56), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = -3
Query: 14 KEVLQAKNPVLVDFYADWCPPCRALG---KVFEQLIQESNGWNIVKLNCDDAGVKSIAQS 70
++ +Q + V+V + CP L + + L G +K + + + Q
Sbjct: 572 QQAVQCLHMVVVRLSPEECPQSVLLEHALRCYSLLSSNPRGLMCIKTHLPSPIINGLIQR 393
Query: 71 HSVSGIPAVFFYNQ--GKLDAAHSFTGF 96
VSG A FYNQ +L + S GF
Sbjct: 392 LLVSGSNAELFYNQLISRLGPSVSVHGF 309
>07779
Length = 1055
Score = 26.2 bits (56), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 14 KEVLQAKNPVLVDFYADWCPPCRALGKVFEQLIQES 49
K Q P LV+ DWCP C LG+ + + +++
Sbjct: 833 KRKTQTCVPTLVNL--DWCPYCHFLGRTQKXVARKA 934
>04510
Length = 685
Score = 25.8 bits (55), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 14 KEVLQAKNPVLVDFYADWCPPCRALGKVFE 43
+ ++ + +LV+F+A WC C+ L +E
Sbjct: 383 QSTIEKHSLMLVEFFAPWCGHCKKLAPQYE 472
>08605
Length = 581
Score = 25.4 bits (54), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 46 IQESNGWNIVKLNCDDAGVKSIAQS 70
++E+ W I+KLNC++ + + S
Sbjct: 330 LKENTSWQIMKLNCENCSLSKLCIS 404
>31608
Length = 511
Score = 25.4 bits (54), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 77 PAVFFYNQGKLDAAHSFTGFDQGKLQKAIDHAT 109
P++FF+ QG+ +H GF KL D T
Sbjct: 88 PSLFFWLQGRSMRSHQLLGFSF*KLAACSDGRT 186
>18943
Length = 1035
Score = 25.4 bits (54), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 14 KEVLQAKNPVLVDFYADWC 32
++ + V V+FYADWC
Sbjct: 147 NTIISRNDVVFVNFYADWC 203
>21509
Length = 754
Score = 25.0 bits (53), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 5 HIKDQAGFDKEVLQAKNPVLVDFYADWCPPCRALGKVF 42
H+ D A F+ + A LV FYA WC C+ + +
Sbjct: 349 HLTD-ATFE-SFIAANRRTLVMFYAPWCGHCKKMKPAY 242
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00621600__86.m00189Mitochondrial_carrier_protein
(318 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11720 45 5e-05
07963 44 1e-04
06435 39 0.002
17936 38 0.004
03676 36 0.017
06258 36 0.021
05312 36 0.026
23802 35 0.030
13140 34 0.087
18662 33 0.19
00983 33 0.22
03275 31 0.62
>11720
Length = 504
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Frame = +1
Query: 138 PADLVNTRTIAEGGKPKEWRWGYKGLMDGINKIAATEGGNAALFRGSYANVLRAVILNIS 197
P DLV R G R Y+G++ + I A G L++G NV A +S
Sbjct: 37 PLDLVKIRFQVNEGHGTAGRPAYRGIVHAMRSIVANSG-LXGLYQGVTPNVWGA---GLS 204
Query: 198 LTGPFDYLNE-KIWITFGDMTWNKYAA--LLWASFWGSVATLPFDN----IRTRL---YA 247
F + N K W+ GD N A +L AS G +TL N +TRL Y
Sbjct: 205 WGLYFFFYNSMKTWMQDGDGKKNLGATNHMLIASAAG-FSTLALTNPIWVTKTRLCLQYE 381
Query: 248 QNADPTKNRLTYSGWADAAKKLIQHEGISGFYVGF 282
A +K Y G ADA K+ + EG+ G Y GF
Sbjct: 382 SEAAASKAERQYRGMADALVKIYKVEGVRGLYKGF 486
>07963
Length = 1390
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 106/286 (37%), Gaps = 10/286 (3%)
Frame = -1
Query: 26 ISAALTYPIEFVKVRSQIRTEGVGIRSKNLYMGINPNKVFREIHATGN--GLRGFYQGFE 83
+ +T+P E+VK + Q+ E G++ + Y G + + AT N G+RG Y+G
Sbjct: 1258 LEICITFPTEYVKTQLQL-DERSGVQKR--YTG-----PWHCVTATVNEHGVRGLYRGLS 1103
Query: 84 SHLIGRLSYLFIRNLTYKIIYDRTKPVKAHNDLSHREKGVIXXXXXXXXXXXTSPADLVN 143
L G + +R ++ D HR + T P + V
Sbjct: 1102 VLLYGSIPKSAVRFGAFEEFKKHLVGADGVLDPHHRLLCGLGAGVMEAIFAVT-PMETVK 926
Query: 144 TRTIAEGGKPKEWRWGYKGLMDGINKIAATEGGNAALFRGSYANVLRAVILNISLTGPFD 203
+ I + K Y+G G+++I +G G Y + +I S
Sbjct: 925 VKFINDQTSAKPH---YRGFFHGVSQIVKEQG-----LHGVYQGLTPTIIKQGSNQAIRF 770
Query: 204 YLNE--KIWITFGDMTWNKYAALLWASFWGSVAT------LPFDNIRTRLYAQNADPTKN 255
++ E K W GD + L+ F + P D ++TRL +A KN
Sbjct: 769 FVMETLKDWYR-GDDKEMRVPTLIVGLFGATAGAASVFGNTPVDVVKTRLQGLDAHKYKN 593
Query: 256 RLTYSGWADAAKKLIQHEGISGFYVGFYAFYIRTFLYAWTTVFITD 301
L D A K+ +HEG FY G R L T I D
Sbjct: 592 TL------DCAMKIFKHEGPKAFYKGTVPRLSRVTLDVAITFMIYD 473
>06435
Length = 1099
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 4/192 (2%)
Frame = +1
Query: 6 KRYWEPSTAEVIGLSLSVNTISAALTYPIEFVKVRSQIRTEGVGIRSKNLYMGINPN--K 63
K++ P + G V ++ A TYP++ V+ R + + +K++Y I K
Sbjct: 250 KKHLPPGRRFLAGSMAGVTSV--AFTYPLDLVRAR-------MAVTAKDMYHNIFEVFLK 402
Query: 64 VFREIHATGNGLRGFYQGFESHLIGRLSYLFIRNLTYKIIYDRTKPVKAHNDLSHREKGV 123
++RE GLR Y+GF ++G + Y TY+ + D S E+
Sbjct: 403 IYRE-----EGLRTVYRGFTPTILGSIPYSGTSFFTYETLKKLHAEKFKGRDPSAIERLA 567
Query: 124 IXXXXXXXXXXXTSPADLVNTRTIAEG--GKPKEWRWGYKGLMDGINKIAATEGGNAALF 181
+ P D+V R G G ++ Y ++ ++ A EG L+
Sbjct: 568 FGACAGLLGQSASYPLDIVRRRMQTAGITGHAQD----YTSILGTARQVVAEEGFIQGLY 735
Query: 182 RGSYANVLRAVI 193
+G N ++ I
Sbjct: 736 KGLSMNWIKGPI 771
>17936
Length = 447
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 237 PFDNIRTRLYAQNADPTKNRLTYSGWADAAKKLIQHEGISGFYVGF 282
P D ++TR+ Q L Y D KK+I+HEG+ G Y G
Sbjct: 243 PIDLVKTRMQNQRTGSYVGELMYKNSFDCFKKVIRHEGVRGLYRGL 106
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 31 TYPIEFVKVRSQIRTEGVGIRSKNLYMGINPNKVFREIHATGNGLRGFYQGFESHLIG 88
YPI+ VK R Q + G + M N F+++ G+RG Y+G L+G
Sbjct: 249 VYPIDLVKTRMQNQRTGSYVGE---LMYKNSFDCFKKV-IRHEGVRGLYRGLAPQLVG 88
>03676
Length = 2457
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Frame = +2
Query: 160 YKGLMDGINKIAATEGGNAALFRGSYANVLRAVILNISLTGPFDYL-------------N 206
Y+G +D KI EG RG Y + +L IS G ++
Sbjct: 767 YRGTIDAFTKIFREEG-----VRGLYKGFVPG-MLGIS-HGALQFMAYEEMKTLYNQYRK 925
Query: 207 EKIWITFGDMTWNKYAALLWASFWGSVATLPFDNIRTRLYAQNADPTKNRLTYSGWADAA 266
+ + G + +AA+ + + + T P+ IR+RL Q+ Y+G D
Sbjct: 926 QPLDTKLGSGEYVTFAAV--SKMFSACLTYPYQVIRSRLQDQHRH-------YNGVIDVC 1078
Query: 267 KKLIQHEGISGFYVGFYAFYIR 288
+++I+ E GFY GF A+ +
Sbjct: 1079QQIIRKESYRGFYKGFTAYMLH 1144
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +1
Query: 21 LSVNTISAALTYPIEFVKVRSQIRTEGVGIRSKNLYMGINPNKVFREIHATGNGLRGFYQ 80
+S +S + +P+E VKVR Q+ EG G + Y GI R I G G YQ
Sbjct: 343 VSGGVVSTLVLHPLELVKVRFQV-NEGNGSSGRPAYQGI--GHAMRSI-FNNRGFVGLYQ 510
Query: 81 G 81
G
Sbjct: 511 G 513
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Frame = +2
Query: 202 FDYLNE-KIWITFGDMTWNKYAA--LLWASFWGSVATLPFDN----IRTRL------YAQ 248
F + N K W+ G+ N AA L AS G ATL N +TRL YA
Sbjct: 560 FSFYNSMKNWMQEGNTQKNLGAANHLFIASTAG-FATLVLTNPIWVTKTRLCLQYEGYAS 736
Query: 249 NADPTKNRLTYSGWADAAKKLIQHEGISGFYVGF 282
+ Y G DA K+ + EG+ G Y GF
Sbjct: 737 TTTVPVSHAQYRGTIDAFTKIFREEGVRGLYKGF 838
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = +2
Query: 13 TAEVIGLSLSVNTISAALTYPIEFVKVRSQIRTEGVGIRSKNLYMGINPNKVFREIHATG 72
+ E + + SA LTYP + ++ R Q + R N + + + +E +
Sbjct: 950 SGEYVTFAAVSKMFSACLTYPYQVIRSRLQDQH-----RHYNGVIDVCQQIIRKESY--- 1105
Query: 73 NGLRGFYQGFESHLIGRLSYLFIRNLTYKII 103
RGFY+GF ++++ + I L Y+++
Sbjct: 1106 ---RGFYKGFTAYMLHVTPNICIVFLIYELL 1189
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = +1
Query: 212 TFGDMTWNKYAALLWASFWGSVATL---PFDNIRTRLYAQNADPTKNRLTYSGWADAAKK 268
+ G M ++ L G V+TL P + ++ R + + R Y G A +
Sbjct: 295 SVGLMRHIRFEHLYAGVSGGVVSTLVLHPLELVKVRFQVNEGNGSSGRPAYQGIGHAMRS 474
Query: 269 LIQHEGISGFYVG 281
+ + G G Y G
Sbjct: 475 IFNNRGFVGLYQG 513
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 10/166 (6%)
Frame = +2
Query: 30 LTYPIEFVKVRSQIRTEG------VGIRSKNLYMGINP-NKVFREIHATGNGLRGFYQGF 82
LT PI K R ++ EG V + I+ K+FRE G+RG Y+GF
Sbjct: 674 LTNPIWVTKTRLCLQYEGYASTTTVPVSHAQYRGTIDAFTKIFRE-----EGVRGLYKGF 838
Query: 83 ESHLIGRLSYLFIRNLTY---KIIYDRTKPVKAHNDLSHREKGVIXXXXXXXXXXXTSPA 139
++G +S+ ++ + Y K +Y++ + L E T P
Sbjct: 839 VPGMLG-ISHGALQFMAYEEMKTLYNQYRKQPLDTKLGSGEYVTFAAVSKMFSACLTYPY 1015
Query: 140 DLVNTRTIAEGGKPKEWRWGYKGLMDGINKIAATEGGNAALFRGSY 185
++ +R ++ Y G++D +I E +RG Y
Sbjct: 1016QVIRSRL-------QDQHRHYNGVIDVCQQIIRKES-----YRGFY 1117
>06258
Length = 1005
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 137 SPADLVNTR-TIAEGGKPKEWRWGYKGLMDGINKIAATEGGNAALFRGSYANVLRAVI-L 194
+PAD++ TR +AE + + YKG+MD KI E G AA ++GS A V R+
Sbjct: 235 TPADVIKTRLQVAE----RAGQTTYKGIMDCCRKITQEE-GLAAFWKGSAARVFRSSPQF 399
Query: 195 NISLTGPFDYLNEKIWITFG 214
++L ++ L ++ FG
Sbjct: 400 GVTLL-TYELLQRLFYVDFG 456
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Frame = +1
Query: 180 LFRGSYANVLRAVILNISLTGPFD-----YLNEKIWITFGDMTWNKYAALLWASFWGSVA 234
L++G+ A +LR V + + + +E + + G + + A + A+F+ +
Sbjct: 64 LYKGARACLLRDVPFSAIYFPAYAHNKKYFADENGYNSPGTLLLSATIAGMPAAFFPT-- 237
Query: 235 TLPFDNIRTRL-YAQNADPTKNRLTYSGWADAAKKLIQHEGISGFYVGFYAFYIRT 289
P D I+TRL A+ A T TY G D +K+ Q EG++ F+ G A R+
Sbjct: 238 --PADVIKTRLQVAERAGQT----TYKGIMDCCRKITQEEGLAAFWKGSAARVFRS 387
>05312
Length = 1032
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Frame = -3
Query: 202 FDYLNEKIWITFGDMTWNKYAALLWASFWGSVA-------TLPFDNIRTRLYAQNADPTK 254
F ++ E + + NK+ + +G++A P D ++TR+ A K
Sbjct: 553 FAFVIETLKDLYKGGDRNKHVPKVVVGLFGAIAGAASVFGNTPLDVVKTRMQGLEAARYK 374
Query: 255 NRLTYSGWADAAKKLIQHEGISGFYVGFYAFYIRTFLYAWTTVFITD 301
N AD A +++++EG+ FY G R L T I D
Sbjct: 373 N------TADCAMQILKNEGLPAFYKGTVPRLGRVCLDVAITFMIYD 251
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Frame = -2
Query: 174 EGGNAALFRGSYANVLRAVILNISLTGPFDYLNEKIWITFGDMT-WNKYAALLWASFWGS 232
E G L+RG + ++ + + G F++L K G ++ K L A +
Sbjct: 914 ERGFFGLYRGLSVLLYGSIPKSAARFGAFEFLRSKAVGPSGQLSNSGKLLCGLGAGICEA 735
Query: 233 -VATLPFDNIRTRLY--AQNADPTKNRLTYSGWADAAKKLIQHEGISGFYVGF 282
VA P + I+ + ++A+P + G+A K++++ EGISG Y G
Sbjct: 734 IVAVTPMETIKVKFINDQRSANPK-----FKGFAHGVKEIVKAEGISGIYKGL 591
>23802
Length = 1077
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%)
Frame = +2
Query: 227 ASFWGSVATLPFDNIRTRLYAQNADPTKNRLTYSGWADAAKKLIQHEGISGFYVGFYAFY 286
AS +G+ P D ++TRL +A KN L D A K+ +HEG FY G
Sbjct: 41 ASVFGNT---PVDVVKTRLQGLDAHKYKNTL------DCAMKIFKHEGPKAFYKGTVPRL 193
Query: 287 IRTFLYAWTTVFITD 301
R L T I D
Sbjct: 194 SRVTLDVAITFMIYD 238
>13140
Length = 1844
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 10/161 (6%)
Frame = -1
Query: 138 PADLVNTRTIAEGGKPKEWRWGYKGLMDGINKIAATEGGNAALFRGSYANVLRAVILNIS 197
P DLV R + GK Y +++G ++ E G AL +G +A L V ++
Sbjct: 1379 PLDLVKCRIQVDPGK-------YGNIVNGF-RVTLAEEGVRALGKG-WAPTL--VGYSMQ 1233
Query: 198 LTGPFDYLNEKIWITFGDMTWNKYAALLWASFW----------GSVATLPFDNIRTRLYA 247
G F + E I +G M + L S + +A P + ++ R+
Sbjct: 1232 GVGKFGFY-EAFKILYGGMLGEENCYLWRTSLYLAASASAEFFADIALCPMEAVKVRIQT 1056
Query: 248 QNADPTKNRLTYSGWADAAKKLIQHEGISGFYVGFYAFYIR 288
Q T R + A ++++ EG+SGFY G + R
Sbjct: 1055 QPGWSTTLR-------EGAPRILREEGLSGFYKGLVPLWAR 954
>18662
Length = 551
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 212 TFGDMTWNKYAALLWA---SFWGSVATLPFDNIRTRLYAQNADPTKNRLTYSGWADAAKK 268
T G + +++ +WA + W V+ LP I+TRL + + Y G A+A
Sbjct: 322 TLGAASRHRWKTWVWA*LRAPWLPVSFLPITVIKTRLESGS-------FQYQGMANALTL 480
Query: 269 LIQHEGISGFYVGFYAFYIR 288
+ + EGI G Y G +R
Sbjct: 481 IYKREGIRGLYSGLSPTLLR 540
>00983
Length = 819
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = -2
Query: 237 PFDNIRTRLYAQNADPTKNRLTYSGWADAAKKLIQHEGISGFYVGFYAFYIRTFLYAWTT 296
P D ++TRL +A Y G D A K++++EG FY G R L T
Sbjct: 572 PIDVVKTRLQGLDAH------KYKGTIDCAVKIMKNEGPRAFYKGTLPRLSRVTLDVAIT 411
Query: 297 VFITD 301
I D
Sbjct: 410 FMIYD 396
>03275
Length = 3821
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Frame = +1
Query: 197 SLTGPF-------DYLNEKIWITFGDMTWNKYAALLWASFWGSVATLPFDNIRTRLYAQN 249
S+ PF D+L E+ + G++ A + A LP I+TRL +
Sbjct: 3088 SILAPFII*GATLDWLQEQQAVIAGNLGMGMTARTMAACL-----ILPITVIKTRLES-- 3246
Query: 250 ADPTKNRLTYSGWADAAKKLIQHEGISGFYVGFYAFYIR 288
Y G A+A + + EGI G Y G +R
Sbjct: 3247 -----GSFQYQGMANALTLIYKREGIRGLYSGLSPTLLR 3348
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00726150__117.m00133potassium_cation_channel_protein
(964 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26719 46 6e-05
30140 34 0.31
>26719
Length = 394
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = -3
Query: 164 YTSVYTSAIYWSVITMLTVGYGDITPVSIDEKVYVIFVSLV 204
+ S T ++YW++ITM TVGYGDITP + +V + SL+
Sbjct: 146 FASDLTGSVYWAIITMTTVGYGDITPSTTLGRVMGVLCSLI 24
>30140
Length = 1158
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = -1
Query: 426 IKDKISFNNQFDLN--------KLRCLACGNENHSVQFCDRLHLKPNFDKLLYELNSSKK 477
++ +IS + F LN L CLAC N R +++PN L YE+N+SK
Sbjct: 1011 LRKRISL*SLFQLNCFVPVVILTLCCLACYFRNRL-----RPNVRPNSSHLPYEINASKM 847
Query: 478 QERQPHNR 485
+P NR
Sbjct: 846 STEKPVNR 823
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00151670__3700.m00219oxidoreductase,
_zinc-binding_dehydrogenase_family_protein
(350 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
19135 44 1e-04
01696 32 0.36
09080 32 0.51
13513 28 5.7
12931 28 7.1
01718 27 8.5
>19135
Length = 480
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Frame = -2
Query: 206 EEDLRSL----SEKLDATI-SFDAVGGPLAGVILKNMPDGSTAYIYGNLSMKNSEASQFD 260
EE+LR+ + KL I SF+ VGG A + +++ +G YG +S + +
Sbjct: 449 EEELRTTDIFKTGKLKRPILSFNCVGGKSATEVSRHLDNGGVMVTYGGMSREPVTVATGP 270
Query: 261 LIFKKKKIKGFWLSTQLKRI----DRKQLLELYAQIGPMYRDVLATKYIKKYPLFQIGDA 316
+IFK +GFW++ K +R+Q+ E Q+ M + + PL Q DA
Sbjct: 269 IIFKDIAFRGFWMTRWTKENFSAPERQQMFEEIFQL--MEQGKFVAPKHEMVPLAQFKDA 96
Query: 317 VRF 319
F
Sbjct: 95 FSF 87
>01696
Length = 1636
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%)
Frame = -1
Query: 101 GCFAEYAVAEAIQAIPFPDNYSFEEGASGLVNPLSVVL 138
G A Y V A PD+ SFEEGA L+ PLSV L
Sbjct: 1546 GALARYHVHAADFCFKLPDHVSFEEGA--LIEPLSVGL 1439
>09080
Length = 1659
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = +2
Query: 7 TMKALVLEKYGAPPIYVDVPVPRPGHSEILVKIIVSPINPADLSFMKGYYSSQKKIPVTL 66
T KA V + P + V P E+ +KI+ + + D + G + PV L
Sbjct: 11 TCKAAVAWEAKQPLTIETIQVAPPKAGEVRIKILATGVCHTDAYTLNGL-DPEGAFPVVL 187
Query: 67 GSEGAGIVVDAG 78
G EGAGIV G
Sbjct: 188GHEGAGIVESIG 223
>13513
Length = 2344
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Frame = +2
Query: 195 EHILITDEPNFEEDLRSLSEKLDATISFDAVGGPLAGVILKNMPDGSTAYIYG---NLSM 251
EH L + E L E + T+ + G +G+IL S+A G N +
Sbjct: 479 EHKLSQYADDTEVILNGDRESFEETMXILDIFGKKSGLILN--AGKSSAI*LGSKRNSPI 652
Query: 252 KNSEASQFDLIFKKKKIKGFWLSTQLKRIDRKQLLELYAQIGPMYR 297
K + D ++ KI G W + L+ I + E +A++ P+Y+
Sbjct: 653 KYMQHLSMDWNPQRFKILGIWFTNDLQDITDMNIREKFAEVKPLYK 790
>12931
Length = 833
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 165 YRICKHNNIPVINIVRRKE 183
Y C+H NI + NI +RKE
Sbjct: 537 YAFCRHXNIQLFNIFQRKE 593
>01718
Length = 959
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +3
Query: 169 KHNNIPVINIVRRKEQANLLR-----AEEGCEHILITDEP--NFEEDLRSLSEKLDATIS 221
+HN + + ++ R + AN+LR EG H L P N E+ L E+L T
Sbjct: 264 RHNMLREVQLLNRLQHANILRFMGVCVHEGQLHALTEYIPSGNLEQLLEKKDEELPWTQR 443
Query: 222 FDAVGGPLAGVILKNMPDGSTAYIYGNLSMKN 253
G G+ + ST +I+ +L+ KN
Sbjct: 444 IQLTLGLARGLDYLH----STRFIHRDLTSKN 527
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00622710__3814.m00845Pyridine_nucleotide-
disulphide_oxidoreductase_family_protein
(631 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00800 45 1e-04
18071 33 0.51
>00800
Length = 2644
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = +2
Query: 412 VVLSDGTSLEADMVLIGAGVSPN---TRFVGEKLEKDNYGALKTDVFLQTSHPDVFAAGD 468
+ LSD + ++ D V+ G+ PN R G +++++ +G + L+ + +V+ AGD
Sbjct: 218 LTLSDDSQVKVDYVVPAVGLEPNVDLARTSGLEVDEE-HGGFLVNAELE-ARTNVWVAGD 391
Query: 469 IANYPYHYTGQRARFEHINSSIYQGSIAALNMVGQKTPCGEIPFFWTRFWNKSLHYTGYA 528
A + Y R R EH + ++ G +A NM G P +W++S+ ++
Sbjct: 392 AACF-YDIQLGRRRVEHHDHAVVSGRLAGENMTGAAKP----------YWHQSMFWSDLG 538
Query: 529 P 529
P
Sbjct: 539 P 541
>18071
Length = 473
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 415 SDGTSLEADMVLIGAGVSPNTRFVGEKLEKDNYGALKTDVFLQTSHPDVFAAGDI-ANYP 473
S+G + +L+G GV N +K + F T HP++ A GD+ + +
Sbjct: 217 SNGVASPQQFILLGEGVDDN--------------GVKKEAF--TEHPEIVAEGDVLSEHV 348
Query: 474 YHYTGQRARFEHINSS 489
YH+ R R I +S
Sbjct: 349 YHFAPCRVRASDIQTS 396
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01005100__3757.m00314Phosphopantetheine_attachment_site_fami
ly_protein
(138 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04721 42 1e-04
01924 28 1.5
26302 25 9.5
>04721
Length = 1395
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = -1
Query: 63 VESRILKVLSNFEQVNLKNLRWEQNF-KKLGLDSLDQTALLASIEHEFTILFPDGVFEGF 121
++ RIL VL +++++ + L + +F LGLDSLDQ ++ ++E EF PD E
Sbjct: 870 LQQRILLVLRLYDKIDPEKLTLDSHFMNDLGLDSLDQVEIVMAMEDEFGFEIPDADSERL 691
Query: 122 ENLEQVVNYI 131
+V YI
Sbjct: 690 MRPRDIVQYI 661
>01924
Length = 1183
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 88 FKKLGLDSLDQTALLASIEHEFTILFPDGVFE 119
+KK G ++DQT + I+ T+LF DG F
Sbjct: 958 YKKGGFIAVDQTKVCLCIKCVNTMLFMDGSFS 863
>26302
Length = 406
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 87 NFKKLGLDSLDQTALLASIEHEFTIL 112
NF L LD L Q +L S+EH ++
Sbjct: 169 NFLPLKLDKLQQIIILCSLEHVLALI 246
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00454080__3811.m01051ribosomal_protein_S8_containing_protein
(130 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11465 40 2e-04
04136 28 1.2
26853 27 2.4
01549 27 3.0
>11465
Length = 1047
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = -2
Query: 45 GYIGEFEVIDDHRSKKVVVELI 66
GYIGEFEV+DDHRS K+VV L+
Sbjct: 1046 GYIGEFEVVDDHRSGKIVVNLV 981
>04136
Length = 1762
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 17 AEKMGKKQ--VLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVELIGRINKCG 73
+EK G+K+ VLLR + F ++M +NGY+ I S + E + +NK G
Sbjct: 1363 SEKKGRKRWHVLLR-----LALFWQLMSQNGYMWAHTQI*SRTSWQDTCEFVEVVNKAG 1202
>26853
Length = 1392
Score = 26.9 bits (58), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +1
Query: 24 QVLLRPVSKVVLKFLRIMQKNGYIGEF 50
++L RP+ +LK++ ++Q NG++ +F
Sbjct: 148 KLLKRPIYDCLLKYMYLLQSNGHLLQF 228
>01549
Length = 2495
Score = 26.6 bits (57), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 69 INKCGVISPRYDVPLADFEKWTNNILPSRQFG 100
IN C S ++VP+ F + T LPS G
Sbjct: 2108 INYCHFFSSHWNVPMLRFREVTERYLPSYH*G 2203
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00068170__3707.m00242EF_hand_family_protein
(218 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01773 42 2e-04
15966 38 0.003
14594 37 0.005
14366 33 0.067
05237 30 0.53
07198 30 0.94
17484 28 2.9
08380 28 3.8
11270 27 5.3
08108 27 6.1
02929 27 8.3
>01773
Length = 1950
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Frame = +1
Query: 65 APSSDDIKAYHRVLDRNGDGIVTYQDIEELCIRY---LTGTTVQRTIVTEEKVKKSSKPK 121
P++D K + D+N DG + +++ EL R L+ + + T V + + +
Sbjct: 142 GPNTDAYKQLFKEADKNNDGYLEIKELRELFKRNGSSLSDSQIADTFVFFDGPRGDKRIT 321
Query: 122 YN------PEVEAKLDVARRLFKRYDKDGSGQLQDDEIAGLLKDTYAEMGMSNFTPTKED 175
+ ++ + LFK DK G G L DE+ LL ++ + T +D
Sbjct: 322 FEXFCKGLDQIVMFVQKLAELFKAKDKSGDGYLDRDELKALLDESGQKF-------TADD 480
Query: 176 VKIWLQMADTNSDGSVSLEEYED 198
V L+ AD N+D + EE+ D
Sbjct: 481 VSAILKSADKNNDNKICFEEFVD 549
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = +1
Query: 32 IFENYDKGRKGRIENTDCVPMITEAYKSFNSFFAPSSDDIKAYHRVLDRNGDGIVTYQDI 91
+F+ DK G ++ + ++ E+ + F ++DD+ A + D+N D + +++
Sbjct: 382 LFKAKDKSGDGYLDRDELKALLDESGQKF------TADDVSAILKSADKNNDNKICFEEF 543
Query: 92 EELCIRYLTGTTVQRT 107
+ C T T R+
Sbjct: 544 VDACT*KXTVCT*NRS 591
>15966
Length = 362
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 136 LFKRYDKDGSGQLQDDEIAGLLKDTYAEMGMSNFTPTKEDVKIWLQMADTNSDGSVSLEE 195
LFK DK G G L DE+ LL ++ + T +DV L+ AD N+D + EE
Sbjct: 149 LFKAKDKSGDGYLDRDELKALLDESGQKF-------TADDVSAILKSADKNNDNKICFEE 307
Query: 196 YED 198
+ D
Sbjct: 308 FVD 316
>14594
Length = 1014
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Frame = +3
Query: 70 DIKAYHRVLDRNGDGIVTYQDIEELCIRYLTGTTVQR---------------TIVTEEKV 114
+ K + D++GDG +T ++ + +R L + TI EE +
Sbjct: 444 EFKEAFSLFDKDGDGTITTSELGTV-MRSLGQNPTENELQDMINEVDADGNGTIDFEEFL 620
Query: 115 KKSSKPKYNPEVEAKLDVARRLFKRYDKDGSGQLQDDEIAGLLKDTYAEMGMSNFTPTKE 174
++ + + E +L R F+ +DKDG+G + E+ ++ + ++ T E
Sbjct: 621 HMMARKMKDTDCEEEL---REAFRVFDKDGNGYISAAELRHVMTNLGEKL-------TDE 770
Query: 175 DVKIWLQMADTNSDGSVSLEEYEDLIIKSLQKAGIRVEKQSLV 217
+V ++ AD + DG V+ EE+ ++ G R+ SL+
Sbjct: 771 EVDEMIKEADLDGDGMVNYEEFVTMMTAK*PSEGTRLLHHSLI 899
>14366
Length = 499
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%)
Frame = -3
Query: 105 QRTIVTEEKVKKSSKPKYNPEVEAKLDVARRLFKRYDKDGSGQLQDDEIAGLLKDTYAEM 164
+RT+ +E + +K ++ PE L R F+ +DK+G+G + E+ +L ++
Sbjct: 320 KRTLTLQEVIAIVTKYEFAPETSDNL---REAFRIFDKEGNGMINAAELRHVLTHLGEKL 150
Query: 165 GMSNFTPTKEDVKIWLQMADTNSDGSVSLEEYEDLI 200
+ E+V ++ AD + DG VS Y D +
Sbjct: 149 -------SDEEVDEMIREADISGDGQVS---YNDFV 72
>05237
Length = 472
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 131 DVARRLFKRYDKDGSGQLQDDEIAGLLKDTYAEMGMSNFTPTKEDVKIWLQMADTNSDGS 190
D R F+ +DKDG+G + A L+ +G T E+V ++ AD + DG
Sbjct: 27 DELREAFRVFDKDGNGFIS----ASELRHVMTNLGEK---LTDEEVDEMIREADIDGDGQ 185
Query: 191 VSLEEY 196
V+ EE+
Sbjct: 186 VNYEEF 203
>07198
Length = 1675
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = -3
Query: 83 DGIVTYQDIEELCIRY--LTGTTVQRTIVTEEKVKKSSKPKYNPEVEAKLDVARRLFKRY 140
DG VT+ + + + L +Q++ V E K K + + K N +D R++F
Sbjct: 629 DGKVTWDEYLDKVYGFNKLDVDEMQKS-VNEAKDKNTDEFKENVNNLELVDEDRKVFDAA 453
Query: 141 DKDGSGQLQDDE-IAGLLKDTYAEMGMSNFTPTKEDVKIWLQMADTNSDGSVSLEEY 196
D + G L E A + +++ ++ + F ++ +D N DG++S+EE+
Sbjct: 452 DANKDGSLNSKEYFAFFMPNSFPQLELERF----------MRQSDKNKDGTISMEEF 312
>17484
Length = 471
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 34/55 (61%)
Frame = -1
Query: 139 RYDKDGSGQLQDDEIAGLLKDTYAEMGMSNFTPTKEDVKIWLQMADTNSDGSVSL 193
+YD+DG+G++ +E +++ M + ++++++ +Q ADT++ G++ L
Sbjct: 468 QYDQDGNGKITRNEFRSVVR-------MLGHSLSEKELEEMMQAADTDASGAIEL 325
>08380
Length = 1236
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 29/164 (17%)
Frame = -1
Query: 41 KGRIENTDCVPMITEAYKS-FNSFFAPSSDDIKAYHRV------LDRNGDGIVTYQDIEE 93
K R + D PM E + F SF P + + V +D NGDG+VT ++
Sbjct: 585 KFRWSDADGEPMDNELTREEFMSFRHPEQSEKTLNNMVNGILGGIDTNGDGVVTEEEFSA 406
Query: 94 LCIRYLTGTTVQ--------------RTI--------VTEEKVKKSSKPKYNPEVEAKLD 131
L + G Q RT VT++++KK P+ NP ++A L+
Sbjct: 405 LPPGEVEGEEYQAMDKQWQKERQEEFRTAIDLDHDGKVTKDEIKKYMDPR-NP-LQALLE 232
Query: 132 VARRLFKRYDKDGSGQLQDDEIAGLLKDTYAEMGMSNFTPTKED 175
A+ L D D G + E+ KD + + NF D
Sbjct: 231 -AKSLVSYMDDDKDGMISQAEVM-RHKDIFISSKVMNFAANVHD 106
>11270
Length = 532
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 165 GMSNFTPTKEDVKIWLQMADTNSDGSVSLEEYEDLIIKSLQKAGIRV 211
++N ED K++ AD N DGS++ +EY + + AG R
Sbjct: 392 NVNNLELVDEDRKVF-DAADANKDGSLNSKEYFAFFMPNSSPAGARA 529
>08108
Length = 818
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Frame = +2
Query: 49 CVPMITEAYKSFNSF---FAPSSD-DIKAYHRVLDRNGDGIVTYQDIEELCIRYLTGTTV 104
C+P+ +S AP +D + + V D +G G ++ ++ E T
Sbjct: 53 CLPVSLSRQSHRHSIQLTMAPLTDAECQTAFAVFDTDGSGSISAGELGEALRAQGADITD 232
Query: 105 QRTIVTEEKVKKSSKPKYNPE-----VEAKLDVARR-----LFKRYDKDGSGQLQDDEI 153
+T +K S + + VE + DVAR +FK D DG GQ+ EI
Sbjct: 233 DQTAELIKKYDSDSNGDIDTDEFRKLVEGESDVARLAQSALMFKSLDADGDGQITASEI 409
>02929
Length = 1353
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 116 KSSKPKYNPEVEAKLDVARRLFKRYDKDGSGQLQDDE-IAGLLKDTYAEMGMSNFTPTKE 174
+S + KY ++AK F+R DKDG G L ++E + G+++ S F +
Sbjct: 131 ESWRGKYLKWIQAKKFRVTDFFRRQDKDGDGFLTEEEFVNGMMQ--------SRFPTNRT 286
Query: 175 DVKIWLQMADTNSDGSVSLEEYEDLI 200
++ + D G L EY+D +
Sbjct: 287 ELNAVFDIFDREKRG---LIEYKDFV 355
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00502220__3716.m00091PX_domain_containing_protein
(411 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12345 42 4e-04
07779 39 0.003
07991 38 0.007
11733 37 0.016
01954 35 0.081
>12345
Length = 933
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +3
Query: 37 KKEGVSQHVVYTVKGEDKLGTFEVIRRFSDFDGLRTYLQKRWPSCYIPPIPDKKSVGNMD 96
KK + +HV Y V + T V+RR++DF L + R+P +P +P KK +G +
Sbjct: 231 KKGLILKHVEYEVTSQRFKTT--VLRRYNDFVALYEMVMMRFPYRILPKLPPKKMLGA-N 401
Query: 97 QKFIEDRRNLLEAFV 111
++FIE R+ L+ F+
Sbjct: 402 REFIEQRKKSLKRFI 446
>07779
Length = 1055
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +1
Query: 58 FEVIRRFSDFDGLRTYLQKRWPSCYIPPIPDKKSVGNMDQKFIEDRRNLLEAFVVKITEL 117
+ V RR+S F L L+K +P P KK+VGN + K +E RR + + ++ ++ L
Sbjct: 649 WNVFRRYSQFLDLHARLKKVYPIVSKFDFPSKKTVGNKEAKVVESRRLVFQQYLRRVINL 828
>07991
Length = 1800
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Frame = +3
Query: 51 GEDKLGTFEVI--------RRFSDFDGLRTYLQKRWPSCYIPPIPDKKSVGNMDQKFIED 102
G DK F + RR+ +FD L L++ +P P +P KK + ++ ++ ++
Sbjct: 183 GADKFVVFNIYMAGRHLCSRRYREFDNLHQNLKREFPDFTFPKLPGKK-IFHLSEQQLDH 359
Query: 103 RRNLLEAFVVKITELKHLWYSEEFQLFIRGT--QSDVEKSLSKLPAQNN 149
RR LE ++ K+ ++ + S+ Q F+ + D E L L +N
Sbjct: 360 RRRGLEQYLEKVCAVRVIGESDVMQDFLAAADLEDDGEVELKVLLPDHN 506
>11733
Length = 739
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = +3
Query: 48 TVKGEDKLGTFEVIRRFSDFDGLRTYLQKRWPSCYIPPIPDKKSVGNMDQKFIEDRRNLL 107
V G +L + I R + QK++P+ +P K+ N D +F+E RR+ L
Sbjct: 42 VVSGARQLACVQAILRLCPPE---RQAQKQFPALQFS-LPPKRWFRNFDAQFLERRRHGL 209
Query: 108 EAFVVKITELKHLWYSEEFQLFI 130
+ F+ IT LK + SEE + F
Sbjct: 210 QNFIDDITALKEICNSEEVRNFF 278
>01954
Length = 1966
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = -3
Query: 24 NFQITVHVVDPIVKKEGVSQHVVYTVKGEDKLGTFE-----VIRRFSDFDGLRTYLQKRW 78
NF + + +VDP +++ Y V+ + L F+ V RR+SDF+ LR+ L+ R
Sbjct: 1868 NF-LEIDIVDPQTHGVAKARYTDYEVRMKSNLPVFKLRDSSVRRRYSDFEWLRSELE-RD 1695
Query: 79 PSCYIPPIPDK 89
+PP+P K
Sbjct: 1694 SKIVVPPLPGK 1662
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01049310__3758.m00226major_facilitator_superfamily_protein
(707 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13366 43 5e-04
17824 37 0.026
08005 35 0.084
22725 30 3.2
10371 29 7.2
14339 28 9.0
29504 28 9.6
>13366
Length = 1953
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 146/344 (42%), Gaps = 15/344 (4%)
Frame = +1
Query: 161 SPLYSQEVLVTEYRAKSGTLISGCQGLGVLTAFLMGF----GLPSDPADTENKFFYVPLS 216
+PLY E+ R GT GV+ A ++G G P+ P +
Sbjct: 1 APLYLSEISPISLRGLCGTFNQLAICFGVVIAEVVGLDSLLGTPT----------LWPYA 150
Query: 217 LPAILMAIHLLLFIFVFKDETPTFYLLQKNDYQSAQNFFSKLYGQSYVEREMEAISAVKK 276
L ++ + L ETP F ++ N+ A+ L G E E + +++
Sbjct: 151 LGFTIVPVVFQLMXLPCCPETPRFLMVVHNEDDEAEKGLIWLRGT---EDVGEELEEMRR 321
Query: 277 ENEEVDKQKKISFCDLF-NQKYRYRTLLALELNVTSVYTAVSVLSVYSTQIFENS-YSTN 334
E E+ K S DLF N + R+ ++++ L + ++ ++ + YST +FE + S
Sbjct: 322 ERAELRNSVKFSVKDLFRNPELRWPLIISIVLMMAQQFSGINAVIYYSTDVFEGAGLSEK 501
Query: 335 VATMFSIATTLGDILLPPLSNKIINWFGKKNSCIYGCFGLILCECIFS-GLGFAGQEKAM 393
V+ + T ++ +S +I+ G++ I G G+++ + + L F +
Sbjct: 502 VSQYATAGTGAVNVCWTFVSAIVIDKVGRRTLMIAGLGGMLIFTVVLTVALVFQNSATWL 681
Query: 394 AFF----IIIHRLVFSLTVGPFNWSYPYEICPPEGLGIYIMQFYVLMYISLYT----FPL 445
+F ++++ + F+ G W + E+ + ++ ++S +T FP
Sbjct: 682 SFLCIGAVVLYIVAFATGPGAIPWFFVAELFAQGPRSAAVSVSVLINWLSNFTVGLVFPE 861
Query: 446 LVSSFGLEAAFLVYAGIMLISTLINMKYVQHIDNCTIKDIQDMF 489
L + E +F+ +A ++L S L + +V I+DI +F
Sbjct: 862 LRDAIN-EYSFVPFAAMLLASLLFVIFFVPETKGKRIEDITLLF 990
>17824
Length = 450
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Frame = -2
Query: 142 LLIIGRILQGSTFAIFSTVSPLYSQEVLVTEYRAKSGTLISGCQGLGVLTAFLMGFGLPS 201
+L++ R+ G + ++ PLY E+ + R GT +G+L + ++G
Sbjct: 437 VLMLSRVFVGLHSGLNISLCPLYLAEISPRKIRGAIGTCHQLAITIGILVSQILGL---R 267
Query: 202 DPADTEN--KFFYVPLSLPAILMAIHLLLFIFVFKDETPTFYLLQKNDYQSAQNFFSKLY 259
+ TE + +LP+I + L + F E+P F L+++ + A+ L
Sbjct: 266 ELLGTETLWPLLFAFNALPSI-----MCLILMPFCPESPRFLLIKQGKDEEARKALVGLR 102
Query: 260 GQSYVEREMEAI 271
G V+ EME +
Sbjct: 101 GTHXVDEEMEEM 66
>08005
Length = 593
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Frame = +3
Query: 109 GEFAQKFGRRKSLMFFSVVLIIGSIL--TLFRNTPLLII---GRILQGSTFAIFSTVSPL 163
G + +FGRR L+ ++G+ + + TP+L I GRI+ G T A V+
Sbjct: 195 GALSDRFGRRPVLL----ASLLGATIDYAIMATTPVLWILYAGRIVAGITGAT-GAVAGA 359
Query: 164 YSQEVLVTEYRAKSGTLISGCQGLGVLTAFLMG 196
Y ++ E RA+ L+S C G+G++ + G
Sbjct: 360 YIADITDGEDRARHFGLMSACFGVGMVAGPVAG 458
>22725
Length = 391
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 418 EICPPEGLGIYIMQFYVLMYISLYTFPLLVSSFGLEAAF 456
E+C PE + +M +L+ +++ T P+L GL F
Sbjct: 258 EVCRPEACAVSVMGSVILVLLNVMTLPILAGCTGLVLYF 374
>10371
Length = 509
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -1
Query: 393 MAFFIIIHRLVFSLTVGPFNWSYPYEICPPEGLGIYIMQFYVLMYISLYTFPLLV--SSF 450
+ F +H LV L + F P+ +CP EG +++ Q+Y + I L FP+ V
Sbjct: 314 LHFLYNVHPLVHHLLL--FQVLVPHVLCPLEGNALFLPQWYQDL-IPLQFFPVRV*HVLL 144
Query: 451 GLEAAFLVY 459
G E FLV+
Sbjct: 143 GHE*EFLVH 117
>14339
Length = 456
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Frame = -2
Query: 292 LFNQKYRYRTLLALELNV-----TSVYTAVSVLSVYSTQIFE---------NSYSTNVAT 337
LF + +Y+ ++ L+ N T +Y LSVY+ F N+YS N+ T
Sbjct: 446 LFGKHIKYK-MITLDHNTW**MYTQIYIHTHPLSVYNNHCFHCINSLICQCNNYSNNILT 270
Query: 338 MFS 340
MFS
Sbjct: 269 MFS 261
>29504
Length = 685
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +2
Query: 293 FNQKYRYRT-LLALELNVTSVYTAVSVLSVYSTQIFENSYSTNVATMFSIATTLGD---I 348
FN +R ++ LL + ++ + +L++ S+ F +S + N++ SI + D +
Sbjct: 299 FNNIHRKKSKLLGISYDLQD-WKKRRILTILSSFAFSHSINLNMSLNISIIFHIYDTKIM 475
Query: 349 LLPPLSNKIINWFGKKNSCIYGCFG 373
L P S ++ G N CI C G
Sbjct: 476 TLDPSSRSVLFKRGHPNMCILRCLG 550
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00790610__133.m00076Leucine_Rich_Repeat_family_protein
(2830 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30747 44 8e-04
19955 41 0.007
20802 39 0.024
19531 35 0.36
19107 33 1.6
>30747
Length = 1168
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%)
Frame = +3
Query: 176 IQNIEKIDLSGNMLKNMQDLNKFKSLVYLNLSYNRIQIIENIEMLVNLQYLNLSNNNIKE 235
+ N+E++ +SGN ++ + DL++ K L L+LS NR+ I I L LQ L++S+N +K
Sbjct: 597 LPNLEELFVSGNSIQKLTDLHRCKKLSELDLSRNRLVDISGISGLPALQTLDMSDNRLKS 776
Query: 236 IPSI 239
+ S+
Sbjct: 777 VTSL 788
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 38/60 (63%)
Frame = +3
Query: 177 QNIEKIDLSGNMLKNMQDLNKFKSLVYLNLSYNRIQIIENIEMLVNLQYLNLSNNNIKEI 236
+ + ++DLS N L ++ ++ +L L++S NR++ + ++ L +L+ LNL+ N I E+
Sbjct: 666 KKLSELDLSRNRLVDISGISGLPALQTLDMSDNRLKSVTSLGKLKSLETLNLNGNQISEL 845
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 179 IEKIDLSGNMLKNMQDLNKFKSLVYLNLSYNRIQIIENIEMLVNLQYLNLSNNNIKEI 236
+ ++DL G + + DL KF+ L L++S N I I+++E +L+ L L +N + ++
Sbjct: 201 VYEVDLHGTEITAVPDLEKFRKLRVLDVSGNYITKIQHLEFTQDLRDLKLYDNKVSQV 374
>19955
Length = 634
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = -2
Query: 182 IDLSGNMLKNMQDLNKFKSLVYLNLSYNRIQIIENIEMLVNLQYLNLSNNNIKEIPSI 239
+DL N ++ + L+ KSL L L NRI+ IEN++ L+ L L+L N I I ++
Sbjct: 216 LDLYDNQIEQIAGLSSLKSLRVLMLGKNRIKRIENLDTLIKLDVLDLHGNQITRIENL 43
Score = 30.8 bits (68), Expect = 9.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = -2
Query: 176 IQNIEKIDLSGNMLKNMQDLNKFKSLVYLNLSYNRIQIIENIEMLVNLQYLNLSNN 231
++++ + L N +K +++L+ L L+L N+I IEN+ L L LNL+ N
Sbjct: 168 LKSLRVLMLGKNRIKRIENLDTLIKLDVLDLHGNQITRIENLNHLGELLVLNLAGN 1
>20802
Length = 526
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%)
Frame = +2
Query: 184 LSGNMLKNMQDLNKFKSLVYLNLSYNRIQIIENIEMLVNLQYLNLSNNNIKEIPSI 239
L N++ ++++++ K L YLNL+ N ++ +EN+E +L+ L+L+ N + E+ SI
Sbjct: 272 LQSNLIPKIENVSRLKKLEYLNLALNNVEKVENLEGCESLKKLDLTVNFVGELTSI 439
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 176 IQNIEKIDLSGNMLKNMQDLNKF-KSLVYLNLSYNRIQIIENIEMLVNLQYLNLSNNNIK 234
I +E++ L ++ ++ L+K+ + L L L N I IEN+ L L+YLNL+ NN++
Sbjct: 179 ISTLEEVTLHQQDIERIEYLDKWCRELKILYLQSNLIPKIENVSRLKKLEYLNLALNNVE 358
Query: 235 EIPSI 239
++ ++
Sbjct: 359 KVENL 373
>19531
Length = 415
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = -2
Query: 178 NIEKIDLSGNMLKNM-QDLNKFKSLVYLNLSYNRIQIIEN-IEMLVNLQYLNLSNNNIKE 235
++ K+ L+ N L ++ + L + +L L++ N +Q + N + L NLQ LN+S+N + E
Sbjct: 369 DLTKLILASNALTSLGEGLAQLPALTVLDVHDNHLQSLPNALGELENLQKLNISHNQLVE 190
Query: 236 IPSIIERNTQL 246
+PS I R + L
Sbjct: 189 LPSCIGRLSNL 157
Score = 30.4 bits (67), Expect = 9.4, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = -2
Query: 176 IQNIEKIDLSGNMLKNMQD-LNKFKSLVYLNLSYNRIQII-ENIEMLVNLQYLNLSNNNI 233
++N++K+++S N L + + + +LV ++ +N++ +I ++ L+ L++SNN++
Sbjct: 237 LENLQKLNISHNQLVELPSCIGRLSNLVSVHAEHNKLTLICPDLVDCRKLEELDVSNNDL 58
Query: 234 KEIPSII 240
E+P I
Sbjct: 57 AELPKYI 37
>19107
Length = 936
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -1
Query: 186 GNMLKNMQDLNKFKSLVYLNLSYNRIQIIENIEMLVNLQYLNLSNNNI-----KEIPSII 240
NMLK Q L + Y + ++ EN+ L YLNLS N I KE+ ++
Sbjct: 741 ANMLKVNQSLEEVHLQKYDMRDFGAFRMAENLMHNYTLTYLNLSCNRITRDGVKELAKVL 562
Query: 241 ERNTQLQ 247
++NT LQ
Sbjct: 561 KQNTALQ 541
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00257230__22.m00354Nonhistone_chromosomal_protein_LG-1,
_putative
(157 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
33187 39 9e-04
11933 28 1.7
37004 27 4.8
10201 27 5.2
07252 25 9.2
>33187
Length = 644
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +3
Query: 64 KQPAPPKRPLSAFFLFKQHNYEQVKKENPNAKITELTSMIAXXXXXXXXXXXXXXXTLQS 123
K P PKR LSAFF F +VK NP + ++ + ++
Sbjct: 81 KDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAE 260
Query: 124 EAKAKYEKDMQAY 136
KA+YE++M Y
Sbjct: 261 RDKARYEREMTEY 299
>11933
Length = 1516
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +2
Query: 63 SKQPAPPKRPLSAFFLFKQHNYEQVKKENPNAKITELTSMIAXXXXXXXXXXXXXXXTLQ 122
S P PKRP++A+FLF ++K +N E+ +
Sbjct: 860 STDPNKPKRPMTAYFLFLGDF--RIKMKNRGVDHKEILRLAGEEWRNMSAEDKKPYEKRS 1033
Query: 123 SEAKAKYEKDMQAY 136
EA KYE +M+ Y
Sbjct: 1034VEAGKKYEVEMEEY 1075
>37004
Length = 431
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 28 FSEGSKNLLLMRNYPHFATLLPPFLQTIDLSFFFYSKQPAPPKR 71
FSE K+L + YP T+L L + FFF + PP R
Sbjct: 281 FSENIKSLSKILPYPVIGTILKQILVCMLCDFFFRLRP*TPPWR 412
>10201
Length = 2003
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 71 RPLSAFFLFKQHNYEQVKKENPNAKIT 97
+ + FF FK+ Y Q+K+ PN+ +T
Sbjct: 1634 KGMQLFFYFKEACYGQIKQHMPNSVVT 1554
>07252
Length = 1120
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 75 AFFLFKQHNYEQVKKENPNAKITELTS 101
A ++K+HNY+ KE P +K+ + S
Sbjct: 440 AALIYKKHNYDLCPKEEPVSKVLQEIS 360
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00384860__41.m00185La_domain_containing_protein
(340 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00781 40 0.001
35180 37 0.016
33935 36 0.023
13157 34 0.073
28271 32 0.31
32379 32 0.32
10941 30 1.1
28138 30 1.1
17423 30 1.1
06498 30 1.1
27594 28 7.1
>00781
Length = 3170
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Frame = -1
Query: 8 VKKQVEYYLSDKNLVNDEKFRTIIQEHPEGY------LSFGNILN-CNKI--KRLGVTTF 58
++ Q+E+Y D NL D + I P+GY LSFG I+ C + K+ G
Sbjct: 3014 LRNQMEFYFGDANLSKDRFMKQEIDRDPDGYIPLSVFLSFGKIMELCASVDTKKEGWMPQ 2835
Query: 59 EQLATSLADSTLVELNEAKDSVRR 82
+ L SL S ++++ E + VRR
Sbjct: 2834 DLLIKSLKLSDMLQVREDESKVRR 2763
>35180
Length = 2181
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = -2
Query: 16 LSDKNLVNDEKFRTIIQEHPEGYLSFGNILNCNKIKRLGVTTFEQLATSLADST--LVEL 73
D NL D+ + +E +G++S +LN N++K++ E + +L ST L+E+
Sbjct: 518 FGDVNLPRDKFLQEKTRED-DGWVSMDTMLNFNRLKQISDDK-EAICKALQKSTAGLMEV 345
Query: 74 NEAKDSVRRAGNKPIP 89
NE +RR +KP+P
Sbjct: 344 NEDMTKIRRCPSKPLP 297
>33935
Length = 515
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +1
Query: 5 KEEVKKQVEYYLSDKNLVNDEKFRTIIQEHPEGYLSFGNILNCNKIKRLGVTTFEQLATS 64
++++ KQ E+Y SD N++ D ++ + GY+S I + K+K L + +A S
Sbjct: 289 RDKIIKQXEFYFSDANILKDSFLLKHVRRNKMGYVSIKLITSFKKVKTL-TKDYRVVAFS 465
Query: 65 LADSTLVELNE 75
L S +E+NE
Sbjct: 466 LRQSVELEVNE 498
>13157
Length = 552
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 1 MSINKEEVKKQVEYYLSDKNLVNDEKFRTIIQEHPEGYLSFGNILNCNKIKRLG 54
+S +++V +QVEYY D NL D KF +G++S +LN N++K++
Sbjct: 370 LSEMEKKVIRQVEYYFGDVNLPRD-KFLQEKTREDDGWVSMDTMLNFNRLKQIS 528
>28271
Length = 588
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 31 IQEHPEGYLSFGNILNCNKIKRLGVTTFEQLATSLADSTLVELNEAK 77
+ ++P ++S GNIL+C I R + T A SL ++LV ++ +
Sbjct: 63 VCQYPHLFISIGNILSC--IHRFNLCTRSTFAISLHKASLVSIHFTR 197
>32379
Length = 581
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 2 SINKEEVKKQ-----VEYYLSDKNLVNDEKFRTIIQEHPEGYLSFGNILNCNKIKRLG 54
+++ EE K+Q VEYYLS+ NL D R ++ PEG++ I N++ L
Sbjct: 198 TVDDEETKRQCLITQVEYYLSEDNLSKDFFLRRRMK--PEGWVPMNLIATFNRMINLS 365
>10941
Length = 1286
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 185 FGESKVTIKVSEGEALSKFWELHGRHYNGVMELKKKEVN 223
G + T+K SEG L++ WEL R +M+ E+N
Sbjct: 769 LGMPQPTLKSSEGAQLTRGWELMVRTPRLLMQASLSEIN 885
>28138
Length = 393
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 136 WRNITEALLKQHNVHAPYCRFGKLEGNF 163
W N+T +L H PYC+ G L N
Sbjct: 273 WLNVTCVVLNALQSHCPYCKHGPLHSNL 356
>17423
Length = 423
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 136 WRNITEALLKQHNVHAPYCRFGKLEGNF 163
W N+T +L H PYC+ G L N
Sbjct: 121 WLNVTCVVLNALQSHCPYCKHGPLHSNL 38
>06498
Length = 916
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 136 WRNITEALLKQHNVHAPYCRFGKLEGNF 163
W N+T +L H PYC+ G L N
Sbjct: 323 WLNVTCVVLNALQSHCPYCKHGPLHSNL 406
>27594
Length = 515
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 10 KQVEYYLSDKNLVNDEKFRTIIQEHPEGYLSFGNILN 46
+QVEYY D NL D KF +G++S +LN
Sbjct: 408 RQVEYYFGDVNLPRD-KFLQEKTREDDGWVSMDTMLN 515
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00497760__3715.m00086SPFH_domain_/_Band_7_family_protein
(379 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05561 41 0.001
07016 36 0.021
>05561
Length = 1025
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%)
Frame = +3
Query: 79 DPYKASYNVEKPLESVKLLALTVLRSEIGKIKLDKLFKERQELXXXXXXXXXXXXXXWGI 138
D + NVE S +LLA T LR+ +G L ++ +R+ + WGI
Sbjct: 6 DATASVNNVEDAARSTQLLAATTLRNVLGTKNLAEILSDREAISHFMQSSLDDATDPWGI 185
Query: 139 NCLRYEILQIDPPNEIKQSMQYEAEAERLKRREVVISEGKQQSEINISEGKKI 191
R E+ + P +++++M EAEA R R +V+ +EG+Q++ + + I
Sbjct: 186 KVERVEVKDVRLPVQLQRAMAAEAEAAREARAKVIAAEGEQKASRALKDAADI 344
>07016
Length = 1481
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%)
Frame = +3
Query: 86 NVEKPLESVKLLALTVLRSEIGKIKLDKLFKERQELXXXXXXXXXXXXXXWGINCLRYEI 145
NV S +LLA T LR+ +G L ++ +R+ + WG+ R E+
Sbjct: 27 NVANANRSTRLLAATTLRNVLGTRNLAEILSDREAISHFMQTTLDDATHPWGVKVERVEV 206
Query: 146 LQIDPPNEIKQSMQYEAEAERLKRREVVISEGKQQSEINISE 187
+ P +++++M EAEA R R +V+ +EG+Q++ + E
Sbjct: 207 KDVRLPVQLQRAMAAEAEAAREARAKVIAAEGEQKASRALKE 332
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00786930__3755.m00440nucleosome_assembly_protein_(NAP)
(344 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10418 40 0.001
21433 30 1.1
>10418
Length = 974
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 11/140 (7%)
Frame = +1
Query: 164 FHIVFTFGPNDYFTNTELKKTVELDENEEP-----------VKTTGTPIEWKEXXXXXXX 212
F + F F PN+YFT + L K + ++P +K G PI W +
Sbjct: 1 FTLEFHFEPNEYFTESVLTKQYTMRFEQDPTDPFSYEGPEIIKCVGCPITWNKGKNVTVK 180
Query: 213 XXXXXXXXXXXXXXRVVERETKIESFFNFFSDSAPTDAPXXXXXXXXXQAMDGDRINIDF 272
R V + + +SFFNFF + + + + DF
Sbjct: 181 VVKKKQKHKGKGLTRTVTKTVQNDSFFNFFDPPEVPEPENEDDVDEDMEQL----LATDF 348
Query: 273 DIARSLIDEVIPYSLEYFLG 292
+I + + ++P ++ YF G
Sbjct: 349 EIGHFIRERIVPRAVLYFTG 408
>21433
Length = 590
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +3
Query: 136 LAMEIKEQDETALKTLTKIEYVLEDTKKFHIVFTFGPNDYFTNTELKKTVELDENEEPVK 195
L EI+ Q + ++ D + +++ F P EL++ + DENE+
Sbjct: 9 LRREIEIQSHLRHDNILRMFGYFHDKTRVYLILEFAPKGELYK-ELQRCHKFDENEQHAI 185
Query: 196 TTGTPIEW 203
T P+ W
Sbjct: 186 YTSCPVPW 209
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00398080__3713.m00004hypothetical_protein
(215 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
14945 39 0.001
22063 39 0.001
14594 33 0.058
03055 33 0.088
>14945
Length = 1337
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +1
Query: 49 KDQILEFYDLFELYFDKQKRG-VDINDILATARTLGLDSKYQMVYKVLSQIQQEHHDQSR 107
K +I E +DLF D G +D ++ R LG + K + + K++++I +E
Sbjct: 109 KQEIREAFDLF----DADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKEGTG--- 267
Query: 108 RLNKPDNVDFKEFIDLLSLKLGNINSEQGVDAIFRLLDNDD 148
+DF +F+ +++ K+ ++++ + FRL D+D+
Sbjct: 268 ------TIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDE 372
>22063
Length = 688
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +3
Query: 49 KDQILEFYDLFELYFDKQKRG-VDINDILATARTLGLDSKYQMVYKVLSQIQQEHHDQSR 107
K +I E +DLF D G +D ++ R LG + K + + K++++I +E
Sbjct: 168 KQEIREAFDLF----DADGSGTIDAKELKVAMRALGFEPKKEEIKKMIAEIDKE------ 317
Query: 108 RLNKPDNVDFKEFIDLLSLKLGNINSEQGVDAIFRLLDNDD 148
+DF +F+ +++ K+ ++++ + FRL D+D+
Sbjct: 318 ---GTGTIDFNDFLTIMTQKMSEKDAKEEILKAFRLFDDDE 431
>14594
Length = 1014
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Frame = +3
Query: 46 TFMKDQILEFYDLFELYFDKQKRGVDINDILATA-RTLGLDSKYQMVYKVLSQIQQEHHD 104
T +Q+ EF + F L FDK G L T R+LG + + +++++ + +
Sbjct: 420 TLTDEQVAEFKEAFSL-FDKDGDGTITTSELGTVMRSLGQNPTENELQDMINEVDADGNG 596
Query: 105 QSRRLNKPDNVDFKEFIDLLSLKLGNINSEQGVDAIFRLLDNDDDVNSKKDCVTKEKLLK 164
+DF+EF+ +++ K+ + + E+ + FR+ D D ++ +L
Sbjct: 597 ---------TIDFEEFLHMMARKMKDTDCEEELREAFRVFDKD-----GNGYISAAELRH 734
Query: 165 VANDLRYNLNEDEAIQIIQ 183
V +L L ++E ++I+
Sbjct: 735 VMTNLGEKLTDEEVDEMIK 791
>03055
Length = 1419
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 25 AQQKQERRAVLEASPFANNHETFMKDQILEFYDL 58
Q + E RAV E+ PF M+ ++L FYDL
Sbjct: 493 GQWQAESRAVAESFPFVGGEPFIMELRLLSFYDL 594
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00046080__3824.m02848Protein_kinase_domain_containing_protei
n
(658 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13212 40 0.002
23347 30 2.4
22555 30 4.1
>13212
Length = 1067
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 5/167 (2%)
Frame = -1
Query: 110 EQEILNVGLAVLTTLQFLKQH-----NIEGGNIEPATIFYDKGQIKIYNNQLILGRLACY 164
E +I V + L FL +H +I+ GN+ + G++K+ + +
Sbjct: 983 EAQICYVCHEMCMALDFLHRHHVIHRDIKAGNV----LLTIDGEVKLADFGVSAKNTQTQ 816
Query: 165 SMIVNYFQRNPLPSPEVLYSAKKRETELVEKYRYETDIFTLGLSLLEMATLEKSSELFRV 224
+ +PEV+ ++T Y ++ DI++LG++L+E A +E ++
Sbjct: 815 QKRDTFIGTPYWMAPEVVLCETLKDT----PYDFKADIWSLGVTLIEFAQIEPPNKEMHP 648
Query: 225 DIYQINVKKFDQRLALIKQRYSDKLVNIIKQMLTMDPRHRPSCESLI 271
I + K D ++++ + I + L DP RP+ L+
Sbjct: 647 MRVLIKIHKSDPPTLEKPKKWTKLFKDFIAKCLVKDPNLRPTAAELL 507
>23347
Length = 1550
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 27 VGICETKGTKRPLLACEAKYSEQEPQYYLNLKHPNL 62
+ IC +KRP L KYSE +PQ LNL P+
Sbjct: 1244 IDICSWLESKRPFLM---KYSENKPQMCLNL*IPDW 1146
>22555
Length = 643
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 62 LVSPLVYDAHFKEFLNLNAQGVTF 85
+++PL+Y+ HF FLNL ++ ++F
Sbjct: 501 IINPLLYETHFVVFLNLLSKNLSF 430
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00195860__16.m00427Thiolase,
_N-terminal_domain_containing_protein
(431 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02902 40 0.002
13792 36 0.034
17665 35 0.086
19628 33 0.23
>02902
Length = 2008
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 71/170 (41%)
Frame = +2
Query: 223 DGSAAAIICSEKFVIENNLQDQAVEILASALTTDKNNTFDDKSFRKLAGYDMSKRAAEKV 282
DG+AA I+ SE+ V NNL LA ++ D + S+ A EK
Sbjct: 476 DGAAALILASEEAVKANNLTP-----LARLVSYGYAGC--DPKVMGIGPAPASRAALEK- 631
Query: 283 YTEAKVCPRSIGVVELHDCFSANELVTYEALGLCDEGKAGEFIDKGDNTYGGRVVVNPSG 342
A + + VVE+++ F+ L + LGL DN N +G
Sbjct: 632 ---AGKTVQDMDVVEVNEAFAPQFLAVAKELGL-------------DNAR-----TNVNG 748
Query: 343 GLISKGHPLGATGLAQLTELCWQLRGMADKRQVHNLQYALQHNLGLGGAC 392
G I+ GHPLGA+G + L ++R NL+YA +G AC
Sbjct: 749 GAIALGHPLGASGARITSNLVHEIR-------RSNLKYA------MGSAC 859
>13792
Length = 1330
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 9/162 (5%)
Frame = +3
Query: 208 KIHEPLTKLQCCPTSDGSAAAIICSEKFVIENNLQDQAVEILASALTTDKNNTFDDKSFR 267
K H +T +DG++A +I SE+ + A+ A D D +
Sbjct: 861 KPHGTVTAANASFLTDGASACLIMSEEKAL-------AMGYKPLAYLRDFLYVAQDPKDQ 1019
Query: 268 KLAGYDMSKRAAEKVYTEAKVCPRSIGVVELHDCFSANELVTYEALG--------LCDEG 319
L G A ++ +A + I V E H+ F+ L +AL + +G
Sbjct: 1020 LLLG---PAYATPRILNKAGLTMSDISVFEYHEAFAGQILANMKALDSDWFGTNMMGLQG 1190
Query: 320 KAGE-FIDKGDNTYGGRVVVNPSGGLISKGHPLGATGLAQLT 360
KAG +DK +N GG +S GHP GATG+ +T
Sbjct: 1191 KAGAPALDK----------LNLWGGSLSLGHPFGATGVRLVT 1286
>17665
Length = 477
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%)
Frame = -3
Query: 298 LHDCFSANELVTYEALGLCDEGKAGEFIDKGDNTYGGRVVVNPSGGLISKGHPLGATGLA 357
L++ F+A L + LG CD K VN +GG I+ GHP+GA+G
Sbjct: 475 LNEAFAAQSLAVVKDLG-CDPAK-----------------VNVNGGAIALGHPIGASGAR 350
Query: 358 QLTELCWQLRGMADKRQVHNL 378
L L ++ K+ V L
Sbjct: 349 ILVTLLHSMKHRGAKKGVAAL 287
>19628
Length = 537
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 338 VNPSGGLISKGHPLGATGLAQLTELCWQLR 367
VNP GG I+ GHPLG TG + L +++
Sbjct: 335 VNPKGGAIALGHPLGCTGARMIGTLLHEMK 246
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00161270__3829.m01338conserved_hypothetical_protein
(215 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30998 37 0.004
17748 27 8.6
>30998
Length = 838
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = -3
Query: 166 IIWEKDQTISELRETIEILELKMKKLEDLIKLKDNKIATLQNRM 209
++ EK+Q + ETI+IL+ K+K+LE L+ LKD +I LQ+R+
Sbjct: 683 LLEEKEQEVLAKNETIQILQAKIKRLEHLLHLKDIRIEDLQSRV 552
>17748
Length = 621
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = -1
Query: 25 SRPKKNIARDFSDGVLMAEVVAHCIPR-LVELHNYSAANSVKQKYYNWETLNKKVF---- 79
+R + ++ +FSD + +++ C+P +E+ S +V + NW KK +
Sbjct: 420 TRCVREVSTNFSDQHFLKDIMQQCLPTDRLEVERPSQWEAVMKHLLNW---MKKPWAXSL 250
Query: 80 --SKLGLLVCKTDITNIVE 96
SK+ L K D+T +++
Sbjct: 249 ESSKIFLTASKKDLTTLLK 193
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00822340__3759.m00400hypothetical_protein
(138 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
25302 36 0.005
01127 28 0.85
27230 27 2.0
25428 27 3.1
15359 27 3.3
22538 27 3.3
24000 27 4.0
08233 26 5.1
35009 25 8.7
>25302
Length = 902
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = -1
Query: 62 ENNTVVLKCDPKLAKPEIKQYLTKLYGLELNKVNTV 97
+NNT+V D + KP +KQ + KLY +E+ +VNT+
Sbjct: 242 DNNTLVFIVDKRANKPLVKQAVKKLYDIEVARVNTL 135
>01127
Length = 1534
Score = 28.5 bits (62), Expect = 0.85, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Frame = +1
Query: 52 MVVHRGEKPLENNTVVLKCDPKLA-KPEIKQYLTKLYGLELNKVN-----------TVRY 99
M+VH GEKP E + CD + A K + ++ G +LN+ + + R+
Sbjct: 481 MLVHSGEKPFECDM----CDKRFAKKSNLNTHMLTHPGHDLNQTDRKPVVCDVCHKSFRH 648
Query: 100 TGKLKNSIL-------------RKTFKTKDFKKVYAVLKTEVEPF 131
G LK +L K F T K++ V+ ++ +PF
Sbjct: 649 KGHLKTHMLIHSGQKSFVCDVCDKRFTTGTHLKLHKVVHSDEKPF 783
>27230
Length = 583
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Frame = -2
Query: 13 ILKDPKAFKNYCLNPLGLTAQKT--SNFPKEQKVEKFCNWEMVVHRGEKPLENNTVVLKC 70
+L DP+ K C+N T T FP E KV+ V G+KP+ +
Sbjct: 531 LLMDPEKSKINCVNXDDGTVNVTYIPEFPGEYKVK--------VSHGDKPVPGSPFTALI 376
Query: 71 DPKLAKPEIKQYLTKLYGLELNKV 94
P P++ YG+ V
Sbjct: 375 TPSELDPDVSSITASGYGISPEGV 304
>25428
Length = 866
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 29/75 (38%)
Frame = -2
Query: 64 NTVVLKCDPKLAKPEIKQYLTKLYGLELNKVNTVRYTGKLKNSILRKTFKTKDFKKVYAV 123
N+ KC P K ++ L L + +YT N+ R TF + + +Y
Sbjct: 826 NSHFRKCHTHSEMPHKKSNTKTIHNLALTFFHLYKYTSMYTNTTHRLTFASSTYTYIYRS 647
Query: 124 LKTEVEPFYQKIETM 138
+ T + Y ++
Sbjct: 646 MCTHSQMSYTNSHSL 602
>15359
Length = 780
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 59 KPLENNTVVLKCDPKLAKPEIKQYLTKLYGLELNKVNTVRYT 100
K + N L K KPE+ + L G+E+N+ + YT
Sbjct: 334 KDIANGYTALHWAAKFGKPEVVKMLANKIGVEINQRSHGGYT 459
>22538
Length = 1255
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/42 (21%), Positives = 23/42 (54%)
Frame = -2
Query: 16 DPKAFKNYCLNPLGLTAQKTSNFPKEQKVEKFCNWEMVVHRG 57
D KA++ +C++ +G + S +++ +K+ + H+G
Sbjct: 1074 DGKAWQRFCVSQVGYMSHAYSQIELDKESQKYVTINTLTHKG 949
>24000
Length = 1007
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 76 KPEIKQYLTKLYGLELNKVNTV 97
KP +KQ + KLY +E+ +VNT+
Sbjct: 200 KPLVKQAVKKLYDIEVARVNTL 135
>08233
Length = 2477
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 39 PKEQKVEKFCNWEMVVHRGEKPLENNTVVLKCDPKLAKPEIKQY 82
P+E + K N +V G KP E N + KCD + KQ+
Sbjct: 2268 PRELEDYKIENGTIVGFPGAKPYEGNMLFEKCDILVPAAGEKQF 2137
>35009
Length = 535
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 83 LTKLYGLELNKVNTVRYTGKLKNSILRKTFKTKDFKKVY 121
+T LYGL++N + Y + I+R T + DF+ VY
Sbjct: 12 ITILYGLQVNYIEHKPYWTFVFLQIVRMTNQKLDFRNVY 128
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00430030__3831.m01548hypothetical_protein
(1903 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
19259 40 0.006
35423 35 0.38
>19259
Length = 769
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Frame = +1
Query: 1715 DQLRK--DIQILPASVRFGVLCANRIYETKLVIKNEDVLAQRVTLKQPQTQHVKVFLNEL 1772
+QLR+ + + P V FGVL Y + +KN V + R ++QP + +
Sbjct: 358 NQLRQMQGLSVFPEEVNFGVLREGCTYAFLVQLKNTGVDSCRYKVRQPPPATGLRVIYKP 537
Query: 1773 GPIPMGLTREVIVRLNT------SQEIIGKFQEEFQIISKHQIYKIPIFANIIEQREYD 1825
G + G+ ++ + L + +G +I+++ I +IP+ A ++ EYD
Sbjct: 538 GAVAAGMKVDLRLELYAIAVGVEGESGVGTISHPLEIVTETDILRIPVQATVMTSYEYD 714
>35423
Length = 634
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +3
Query: 1213 ENKFLPQPSSWVPIRLFTINNDNTGFELFNEEQVQNYFRLKEKDPTCVNLFDDQVPNYQN 1272
N +LP+ + V R+F+I+ ++GF ++ V F K+ D + +F+ V N Q
Sbjct: 30 SNPYLPKSNPSV*NRIFSISGRDSGFSVYQSHSVFQNFNTKKADRDILGVFESMVSN-QT 206
Query: 1273 CKSISFI 1279
K I F+
Sbjct: 207 LKEIFFL 227
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00537300__3718.m00119ribose-
phosphate_pyrophosphokinase_family_protein
(397 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
21831 37 0.013
04746 34 0.11
17438 28 5.4
>21831
Length = 1374
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = -1
Query: 339 SVLENIVVTNTTPKKPGEENIDKITRLSVAPLLAETIYRVQKKQSVADLF 388
S+ +VVTNT P + + KI + ++ LLAE I R+ +S++ LF
Sbjct: 819 SLYVQVVVTNTVPHEVKKMQCHKIKTVDISSLLAEAIRRIHHGESMSYLF 670
>04746
Length = 966
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 157 YYGYSRQDRKTAPRVPISAADVARLLETVGVDRVISIDLHCGQIQGFF 204
Y+ Y+RQ KT RV + LL + VDR +S+ L CG + G +
Sbjct: 461 YWPYTRQQDKTDTRVTV-------LLMILMVDR*VSLFLSCGLVYGLY 339
>17438
Length = 472
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 47 PFDAKLKEQYHRQIPELDNFFSNVVLFSGNANHDLADEIAKILGIKLGDCQV 98
PFD +L + YH P+ FS++ D+A EI + + K+GD +V
Sbjct: 147 PFDWRLSKAYHFVKPKPPPSFSSLQAIKTGT--DMAAEIGRFVLKKIGDDKV 296
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00268030__3690.m00083Polyprenyl_synthetase_family_protein
(424 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09846 37 0.015
>09846
Length = 696
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%)
Frame = -1
Query: 296 RFSERIGVAFQIQDDILNLEGEEYKKTKGQSGEDIHEGKMSLIVLHSLQNSQPEDKDRLF 355
++ +G+AFQ+ DD+L+ E + K + D+ G + VL + Q PE +
Sbjct: 441 QYGRNLGIAFQLVDDLLDFVSSEQQMGK-PTAADLKLGLATAPVLFAAQQF-PELNPLIM 268
Query: 356 KILSSHTDNQDEIDEAIALVKKTDSISYSRKVAQELVQTAWNDIENLLPASRSKQLLKL 414
+ S D ++ A LV K+D I ++ +A E + A ++ L + + L++L
Sbjct: 267 RRFSQEGD----VERARELVAKSDGIEQTKXLASEHTKEAVRLVQCLASSQVQQALIQL 103
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00151990__3700.m00250hypothetical_protein
(367 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27769 37 0.015
>27769
Length = 386
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%)
Frame = -1
Query: 81 PEVKWSRGWQESKEHFGNKNDKLKSAFIALPLRXXXXXXXXXXXXVLGDAASKLYQSGNV 140
P W WQ + + + D +K +F A P++ G ++++ N
Sbjct: 275 PLRHWLVPWQRAVQ---RQPDFMKGSFYANPIKDTFASTSETEAVQQGQEG-QIWR--NK 114
Query: 141 WPEGPLPTFKPHFKLLSNIMVDTSFLLAKHIDKYV 175
WP LP KP F +S M + LL+ HID YV
Sbjct: 113 WPLQSLPGMKPAFLDMSAQMREVGILLSHHIDNYV 9
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -2
Query: 47 IKNVPNYKRARQNLLNLSYQLANLPQEEKAKLDRPEVKWSRGWQESKEHF 96
++ VP++++ R N+L +LANLP E +L+ PE + GW +E F
Sbjct: 385 VEGVPDFQQKRVNILKQC*ELANLP*ESLEELEAPEFHYGIGWSHGREQF 236
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00112650__3812.m02377hypothetical_protein
(330 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00983 37 0.016
17936 36 0.020
05312 35 0.037
00831 35 0.050
23802 31 0.66
07963 31 0.69
03571 30 1.4
03211 29 2.2
11720 27 9.7
>00983
Length = 819
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 172 PLDTVKTLIYNDVQGKYKGAFHCASQVVQNAGWSRLYAGIFQKL 215
P+D VKT + KYKG CA ++++N G Y G +L
Sbjct: 572 PIDVVKTRLQGLDAHKYKGTIDCAVKIMKNEGPRAFYKGTLPRL 441
>17936
Length = 447
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = -1
Query: 171 YPLDTVKTLIYNDVQGK------YKGAFHCASQVVQNAGWSRLYAGIFQKLI 216
YP+D VKT + N G YK +F C +V+++ G LY G+ +L+
Sbjct: 246 YPIDLVKTRMQNQRTGSYVGELMYKNSFDCFKKVIRHEGVRGLYRGLAPQLV 91
>05312
Length = 1032
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 172 PLDTVKTLIYNDVQGKYKGAFHCASQVVQNAGWSRLYAGIFQKL 215
PLD VKT + +YK CA Q+++N G Y G +L
Sbjct: 427 PLDVVKTRMQGLEAARYKNTADCAMQILKNEGLPAFYKGTVPRL 296
>00831
Length = 2468
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -2
Query: 156 ITNQVIVSSIFEAFFYPLDTVKTLIYNDVQGKYKGAFHCASQVVQNA--GWSRLYAGIFQ 213
+T + +I PLD +KT + N G Y HCA + +N G+ + + F
Sbjct: 2314 LTCSTMAGTIATFLTMPLDVMKTRMMNAAPGTYTSLMHCAMDIAKNGPMGFFKGFIPAFV 2135
Query: 214 KLIFNSALIF 223
+L ++ L F
Sbjct: 2134 RLGPHTVLTF 2105
>23802
Length = 1077
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Frame = +2
Query: 172 PLDTVKTLIYNDVQGKYKGAFHCASQVVQNAGWSRLYAGIFQKL---IFNSALIFHL--- 225
P+D VKT + KYK CA ++ ++ G Y G +L + A+ F +
Sbjct: 62 PVDVVKTRLQGLDAHKYKNTLDCAMKIFKHEGPKAFYKGTVPRLSRVTLDVAITFMIYDN 241
Query: 226 -----NQVW 229
N+VW
Sbjct: 242 FMHFFNKVW 268
>07963
Length = 1390
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Frame = -1
Query: 172 PLDTVKTLIYNDVQGKYKGAFHCASQVVQNAGWSRLYAGIFQKL---IFNSALIFHL--- 225
P+D VKT + KYK CA ++ ++ G Y G +L + A+ F +
Sbjct: 649 PVDVVKTRLQGLDAHKYKNTLDCAMKIFKHEGPKAFYKGTVPRLSRVTLDVAITFMIYDN 470
Query: 226 -----NQVW 229
N+VW
Sbjct: 469 FMHFFNKVW 443
>03571
Length = 1155
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 172 PLDTVKTLIYNDVQGK-YKGAFHCASQVVQNAGWSRLYAG 210
P D VK+ I D K Y G + C + + GW+ Y G
Sbjct: 648 PFDVVKSRIQADTSKKHYSGFWDCTKKAYRQEGWTVFYRG 767
>03211
Length = 948
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 152 RNSGITNQVIVSSIFEAFFYPLDTVKT 178
+NSGIT +I S+F F Y LDT T
Sbjct: 554 QNSGITKIIITRSLFNQFQYCLDTAPT 474
>11720
Length = 504
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +1
Query: 170 FYPLDTVKTLI-YNDVQGK-----YKGAFHCASQVVQNAGWSRLYAGI 211
+PLD VK N+ G Y+G H +V N+G LY G+
Sbjct: 31 LHPLDLVKIRFQVNEGHGTAGRPAYRGIVHAMRSIVANSGLXGLYQGV 174
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00901630__161.m00065Protein_kinase_domain_containing_protein
(561 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
34514 37 0.026
15910 34 0.19
15500 33 0.28
31489 33 0.38
03240 32 0.59
21079 32 0.77
19912 30 2.1
00300 30 2.8
19107 30 3.8
00715 28 7.2
03444 28 8.6
01707 28 8.8
>34514
Length = 1178
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = -3
Query: 287 SINLVWNDFVSDGPKQIALNLEKCHNISQLTLNLSYNSINEEGAKYICTGISKCQNITSL 346
S + WN +++A + C ++ TLNL YN +EG KY+C G+ N T L
Sbjct: 471 SWTVCWNPLS---IQRLARSFVFCDQMT--TLNLDYNEFGDEGVKYLCDGLR--NNTTLL 313
Query: 347 NLNLFKNKICAKAAKHIGTILE 368
+++L + + ++G+I+
Sbjct: 312 SISLCYCDLGVASGTYLGSIVS 247
>15910
Length = 1361
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 77 ILQGLLKIYKQGNIHGNIKPSNILYSKFKN--QFLIADLGLSK 117
IL G+ I+ G +H ++KP N+LY + + +AD GLS+
Sbjct: 491 ILHGVQYIHANGVVHRDLKPENLLYECMTDDSKLKLADFGLSR 619
>15500
Length = 550
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +2
Query: 312 NISQLTLNLSYNSINEEGAKYICTGISKCQNITSLNLNLFKNKICAKAAKHIGTIL 367
N LTLNLS+NSI + G ++ G+ N T L LNL N+I + A + +L
Sbjct: 257 NKKLLTLNLSHNSITDLGVSHLAHGL--MTNRTLLVLNLASNQIGDEGAAALAQVL 418
>31489
Length = 329
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 37 FKDDSNGLVALAMEFCDGNLTDVL-SQNDLDILQIQAMTYQILQGLLKIYKQGNIHGNIK 95
FKD + + + + +L ++ S L I+ YQIL+GL I+ +H ++K
Sbjct: 84 FKD-----IHVVFDLMESDLHRIIYSDQPLTEEHIRYFLYQILRGLKYIHSANVVHRDLK 248
Query: 96 PSNIL 100
PSN+L
Sbjct: 249 PSNLL 263
>03240
Length = 1683
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Frame = -3
Query: 22 KDFLKKNKYEYLIK---SFKDDSNGLVALAMEFCDG-NLTDVLSQND-LDILQIQAMTYQ 76
+D L + E+++K SF+D + + M++ G +L +L + + LD + +
Sbjct: 1138 RDILAEADNEWVVKLYYSFQD--HNYLYFVMDYVPGGDLMGLLIRMEILDEPLARFYVAE 965
Query: 77 ILQGLLKIYKQGNIHGNIKPSNILYSKFKNQFLIADLGL 115
++Q + +++ G IH +IKP NIL + + D GL
Sbjct: 964 LVQAIESVHRMGFIHRDIKPDNILIDR-NGHIKLTDFGL 851
>21079
Length = 878
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 45 VALAMEFCD-GNLTDVLSQNDLDILQIQAMTY--QILQGLLKIYKQGNIHGNIKPSNIL- 100
+ L MEF G L + + ++D + + + + QI G+ ++ Q +H ++KP N+L
Sbjct: 49 MVLVMEFVGAGELFERVIRDDFVLTERDCVHFVRQICSGVGYMHTQSILHLDLKPENVLC 228
Query: 101 YSKFKNQFLIADLGLSK 117
S NQ I D GL++
Sbjct: 229 VSDNSNQIKIIDFGLAR 279
>19912
Length = 865
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +1
Query: 312 NISQLTLNLSYNSINEEGAKYICTGISKCQNITSLNLNLFKNKICAKAAKHIGTILEKCQ 371
NIS LNL++N + +GA + G+ N+T +NL N + A + + +++
Sbjct: 136 NISIKELNLAWNHLRRKGAVAVAAGVK--TNVTMKRINLSWNGFGHEGAIALSSAVKENS 309
Query: 372 QITQLEINLGLNKICADGA 390
+ +L+I N+I +GA
Sbjct: 310 VLEELDIM--NNRISTEGA 360
>00300
Length = 2318
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 2/164 (1%)
Frame = -1
Query: 32 YLIKSFKDDSNGLVALAMEFCDGNLTDVLSQNDLDILQIQAMTYQILQGLLKIYKQGNIH 91
Y ++ KD+ + + ME+CD + ++ L I+ T +I+ + +++ +H
Sbjct: 1463 YGVEVHKDE----MLMFMEYCDTGTIEEAAKMGLPEYLIRRYTREIVLAVNHLHENSIVH 1296
Query: 92 GNIKPSNILYSKFKNQFLIADLGLS-KNDEELNIQQSVNNIYQTYDYNMPIKEVAGSEES 150
+IK +NI + + D G S K + +N+ T Y P
Sbjct: 1295 RDIKGANIFLTS-NGHVKLGDFGCSVKLKSHTTMPGEFHNLVGTTAYMAP---------- 1149
Query: 151 NSIKVSLQIYLVNIRNIINLTQQKGDVFSLGLLLIEVFL-KRPL 193
+++ N + + D++SLG ++IE+ KRP
Sbjct: 1148 -------EVFTQNDQGGYG---RAADIWSLGCVVIEMATGKRPW 1047
>19107
Length = 936
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = -1
Query: 294 DFVSDGPKQIALNLEKCHNISQLTLNLSYNSINEEGAKYICTGISKCQNITSLNLNLFKN 353
D G ++A NL HN + LNLS N I +G K + + QN L+L N
Sbjct: 687 DMRDFGAFRMAENL--MHNYTLTYLNLSCNRITRDGVKELAKVLK--QNTALQTLDLGYN 520
Query: 354 KICAKAAKHIG----TILEKCQQITQLEINLGLNKICA 387
++ A HI T+ K Q + + N+G +CA
Sbjct: 519 RLEDDGAIHIAEALTTLNTKLQCLVVVHNNIGSAGLCA 406
>00715
Length = 1788
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 47 LAMEFCDG-NLTDVLS--QNDLDILQIQAMTYQILQGLLKIYKQGNIHGNIKPSNILYSK 103
LAME+ NL +L+ Q D+D ++ Q+ +GL ++ +H ++KP+N L ++
Sbjct: 166 LAMEYVGPLNLQTILNDHQQDIDSSMRLSLALQMARGLHYLHSINIVHLDLKPANCLLTR 345
Query: 104 FKNQFLIADLG 114
+ IAD G
Sbjct: 346 -DLKLRIADFG 375
>03444
Length = 1733
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 115 LSKNDEELNIQQSVNNIYQTYDYNMPIKEVAGSEESNSIKVSLQIY 160
+ N + + Q S +N+ +++PI + SNS+K+SLQI+
Sbjct: 1202 MKSNLQRSDTQISYSNVIDFISFSLPIDIYKNKQTSNSVKISLQIF 1339
>01707
Length = 757
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 47 LAMEFCDGNLTDVLSQ--NDLDILQIQAMTYQILQGLLKIYKQGNIHGNIKPSNILYSKF 104
L ++ D L + L + L ++ + YQ L + ++ IH ++KP NIL ++
Sbjct: 292 LVFDYVDHTLLNELDRYPRGLPEPMVKRIIYQTLLAVNFCHQYNTIHRDVKPENILITR- 468
Query: 105 KNQFLIADLGLSK 117
+ Q + D G ++
Sbjct: 469 QGQVKLCDFGFAR 507
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00765280__3740.m00043branched-
chain_amino_acid_aminotransferase_family_protein
(406 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03138 36 0.027
26208 30 2.5
>03138
Length = 1218
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = -2
Query: 116 EGAKAFKGTDGKIRMFRVRNNMYRLKNSCKSLALPDFDGEELYKC--------IEEYVKI 167
G A + K+R F RN ++ + S K +P+F G L KC + +V++
Sbjct: 794 HGVSALSXSGSKLRSFERRNXIFLMI*SMKEFVMPNFHGRSLKKCTFSVIF*YVTGFVQV 615
Query: 168 DEKW 171
+ W
Sbjct: 614 GKSW 603
>26208
Length = 594
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 252 ISQNAEQKGFQQVLW--LWQDSILEVGTSNIF-FFWVNEQGEKELVTPYLDEGTILPGVM 308
+S NA K +W W+DS LEVG + +F WV + TP L G G
Sbjct: 278 LSVNARSKQQTHHIWKLAWRDSHLEVGLARLFGNCWVRDVVHALNRTPLLSRGECCDG-- 451
Query: 309 RDSILSL 315
R L+L
Sbjct: 452 RQGFLNL 472
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00426260__47.m00256hypothetical_protein
(604 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06563 37 0.034
08423 29 6.4
>06563
Length = 2303
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 31/37 (83%)
Frame = -2
Query: 142 EKKVRNINKKLKEIQQLEKDRKEGKELKESQLQKIAS 178
+KK+RN+ KKL++I++L+ +K GK+L+ +QL+K+ S
Sbjct: 727 DKKIRNLRKKLQQIEKLKDQQKGGKQLEMNQLEKLKS 617
>08423
Length = 1263
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = +1
Query: 282 QAQVIQVVASESFNTQTPQVADEEKTETHAQVNHETVE 319
Q+ + +V +++ +NT+T + D + ETH ++NH++ E
Sbjct: 280 QSCMFRVQSTDPYNTKTVALMD*DIYETHTEMNHKSCE 393
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00773530__3676.m00047hypothetical_protein
(1802 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26718 38 0.036
39424 37 0.072
33713 32 3.2
31903 31 4.4
01193 31 5.1
>26718
Length = 463
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 425 KHERIRIEQWTKKLCTVTTNKIW-KKNRNLYAKELLSMVIASKLREPFTRMP 475
K +R + W KKLC + +++ K+ RN+Y + ++ M+ +L+ PF MP
Sbjct: 401 KSDRRKCAAWIKKLCLSSASQLSDKRKRNMYCELMIEMLKEGRLQTPFDAMP 246
>39424
Length = 1749
Score = 37.0 bits (84), Expect = 0.072, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 37/75 (49%)
Frame = -2
Query: 228 NKTNNELNETYLFKQNIYIPIKQIFMYNNFLVVVTDTLIHLINPITFKIHKTIKEFHNFI 287
NKT N + ETYLFK N YI K + + +V+T T IH FKI I + F+
Sbjct: 404 NKTENTMQETYLFK-NKYIERK----HQTYFIVLT-TKIHAC*TSGFKITCLICVYEFFL 243
Query: 288 KIKCVENQLLITQTV 302
+C+ L+ V
Sbjct: 242 HTRCISKNFLMAPLV 198
>33713
Length = 1032
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = -3
Query: 1284 LKCVLPLCKRLDDEVSFVREAASICLASLAQRNEAKHQILDYSYFARIMELLDDPSKQTQ 1343
++C+L LC + + S VRE+ C+ + + H +L YS+ I++L++ Q +
Sbjct: 715 VECILCLCGQSPNFDSLVRESNFDCVQAFIFTVQVSHPLLXYSFIG*ILQLVN----QMK 548
Query: 1344 LNII 1347
L +I
Sbjct: 547 LKLI 536
>31903
Length = 954
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 1564 FRNNLIIVSNCNYSNELLERYNKGVYDKYISYFNSLLFISTCF 1606
F + NC +LLER + VYD ++S+ N+ FI + F
Sbjct: 597 FSTKITTKQNCLQQWKLLERLARLVYD*FVSWKNAYRFIGSYF 725
>01193
Length = 1414
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 1611 YHSFYQFYNFQCRNCCFIKQLNNSYTNECKLHNQQEQIELCNSISP 1656
+ SF + ++CR C+ ++ NS+T CK Q C S+SP
Sbjct: 350 FLSFTRTAPYRCRPSCYYLKITNSHTGHCK------QTLKCVSLSP 231
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00444170__3704.m00006hypothetical_protein
(321 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07279 35 0.053
23303 29 2.3
>07279
Length = 844
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 245 FMNCPVFVALGK--CVDKPVVRDGKIVIAPVMNINFTVDHRFIDGGKAKALNTSFKEVYE 302
+N P LG D+PV + I P+M + T DHR +DG +A K E
Sbjct: 96 IINPPQSAILGMHGIFDRPVAVGKNVEIRPMMYVALTYDHRLVDGREAVTFLRKIKAAVE 275
Query: 303 HPE 305
P
Sbjct: 276 DPR 284
>23303
Length = 873
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 55 MCATWEEPKEGCIYIRHEIDCTK 77
+ AT E PK GC + + +DCTK
Sbjct: 84 IAATMESPKAGCQHTKRLVDCTK 16
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00571650__3810.m02056hypothetical_protein
(322 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
17886 35 0.059
17033 29 2.9
>17886
Length = 495
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -1
Query: 18 RGLHSSGKYEKIVVADVFPKYYYLERYLRFKDTLTQNKTKLEEVKLTDKTDLESAIKKAS 77
RG + K+ VAD ++ +RFK L + K L +V L D ES++ +
Sbjct: 189 RGFSPVAGWVKMQVADFV---XMRQKIIRFKSELVKKKVSLPDVTLPQHNDAESSVSVCA 19
Query: 78 HVVY 81
VVY
Sbjct: 18 LVVY 7
>17033
Length = 2217
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = -3
Query: 55 KTKLEEVKLTDKTDLESAIKKASHVVYVTHD 85
KT++E++K+ D T ++ +K+ + ++YV HD
Sbjct: 1654 KTEIEKLKMKDLT-MQDLVKEVARIIYVVHD 1565
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00420130__3679.m00043hypothetical_protein
(190 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30367 33 0.078
04473 28 2.5
35151 28 2.9
21684 26 10.0
>30367
Length = 384
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%)
Frame = +1
Query: 60 PLFNQSIFKLGFAQRILLTRPAIEWHCFKIATVAASWLAWLNFSPFYRKLENEKEYLLDT 119
P+ + + G R L+T P H F+ V A W W+ SP EN + + T
Sbjct: 79 PVLGEGVGTGGV--RTLVT-PHPLTHVFEGRVVVAVWT*WIRLSPGSSGPENNLKLVEGT 249
Query: 120 LESRIGINVLDLNDALPRWTTSQEYNRRTQ 149
LE +++L+ A+ R T NR Q
Sbjct: 250 LEF-----LVELDVAVLRQTVGGVTNRAEQ 324
>04473
Length = 1300
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 69 LGFA-QRILLTRPAIEWHCFKIATVAAS 95
LGF +R+L T+ AI W+ FKIA A S
Sbjct: 141 LGFV*ERLLQTKRAIHWNFFKIACYACS 58
>35151
Length = 844
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 12/45 (26%)
Frame = +2
Query: 110 ENEKEYL-------LDTLESR-----IGINVLDLNDALPRWTTSQ 142
E EKE + +DT E R + +N+LD+ND P +T SQ
Sbjct: 362 EAEKEIIFQIVAREVDTAEQRSSTATVTLNILDMNDNAPNFTHSQ 496
>21684
Length = 576
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 80 PAIEWHCFKIATV----AASWLAWLNFSPFYRKLENEKE 114
P + W C AT +++W +WL+F P+ +E+
Sbjct: 185 PPLCWCCTSSATCWLSTSSTWTSWLSFPPWPEPCRSERS 301
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00328610__3705.m00104Leucine_Rich_Repeat_family_protein
(253 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08106 33 0.080
19478 32 0.17
15929 32 0.21
14078 30 0.90
>08106
Length = 997
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 101 GNLIKNLKEIDVLQQLPKLFQLDFLNNDVAQDPNYREYVFSTLKGLGILD 150
GNL+ ++KE L+ LP L L N VA + +YR + L+ L LD
Sbjct: 140 GNLLTSIKEAAKLKDLPLLRALSLAENPVADEDDYRLEILIALRCLERLD 289
>19478
Length = 846
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 102 NLIKNLKEI-DVLQQLPKLFQLDFLNNDVAQDPNYREYVFSTLKGLGILDNYDSKGQEV 159
N + +++E+ D+L P+L +L+ + N + P Y++ + K L +LD G+EV
Sbjct: 708 NQLNDMRELSDLLAAWPRLCRLELVGNPLCHKPKYKDRIIVMCKQLXMLD-----GKEV 547
>15929
Length = 1074
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%)
Frame = +3
Query: 7 ELIEEQTQNNDPNTIEELVLDKSKIGKFTEEIKKKLESFPNLTSLSLNECEITSLENFPK 66
+LIE+ Q +P EL L +I E + L+ F ++ ++ +I L+ FP
Sbjct: 210 DLIEQSAQYTNPVRDRELDLRGYRI-PVIENLGATLDQF---DTIDFSDNDIRKLDGFPL 377
Query: 67 LPKLIRVELIDNKITGXXXXXXXXXXXXXXXXXGGNLIKNLKEIDVLQQLPKLFQLDFLN 126
L +L + L +N+I N I L ++D L KL L +
Sbjct: 378 LKRLKSLLLNNNRIVRIVENLGEVIPNINTVVLTNNNIHELGDLDPLASFTKLEYLSLMR 557
Query: 127 NDVAQDPNYREYVFSTLKGLGILD 150
N V +YR YV + L +LD
Sbjct: 558 NPVNAKKHYRLYVIFKIPSLRVLD 629
>14078
Length = 1045
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 101 GNLIKNLKEIDVLQQLPKLFQLDFLNNDVAQDPNYREYVFSTLKGLGILD 150
GNL+ ++KE+ L+ L L L N VA + +YR V L+ L LD
Sbjct: 205 GNLMSSVKEMTKLKCLSFLRALALSENPVADEDDYRMEVLIALRTLERLD 56
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00196190__16.m00460hypothetical_protein
(1670 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
33180 37 0.088
10162 35 0.18
02090 32 1.7
19140 32 2.4
04358 32 2.8
01249 32 2.9
19949 31 3.8
06660 31 4.4
02147 31 4.5
21921 31 5.1
17266 30 6.0
04209 30 8.6
15949 30 10.0
>33180
Length = 460
Score = 36.6 bits (83), Expect = 0.088, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = -2
Query: 603 HPLPTNAMIISDQFNLLITGGQDGSIYLRNLEKLSEFQQIKSHNWKINGVSTLDFSKKYK 662
H +++ S ++ G DG +Y+ + E +I +H+ +N V+ D S +
Sbjct: 456 HSFCIFSLMFSSDNTEIVGGANDGCLYVYDRESNQRTLKIDAHDDDVNAVAFADDSSQ-- 283
Query: 663 LLYSGGYDGSFFAW 676
+LYSGG DG W
Sbjct: 282 ILYSGGDDGLCKVW 241
>10162
Length = 1629
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 359 SPIVFIRELENQNVVITVTQNSYIYFWDIEKKIQVSTFKL----NCTIVCGDIHPNSKTL 414
S I +++ +V++ TQ ++ W + + S K+ +CG I PN K +
Sbjct: 30 SDITWLQWHGGAHVLLAGTQGGEVWLWQVPSQ-DYSKMKMLQSHGQPSLCGKILPNGKYV 206
Query: 415 ILGSSSGVIRILDISNLNGVH 435
+G S GV+++ D+ VH
Sbjct: 207 CVGYSDGVVKLWDLKTGTAVH 269
>02090
Length = 1841
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = -3
Query: 609 AMIISDQFNLLITGGQDGSIYLRNLEKLSEFQQIKSHNWKINGVSTLDFSKKYKLLYSGG 668
A+ IS + + DG+I + +L + +Q + H +G S +D S L++GG
Sbjct: 1611 ALAISPDGKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---DGASCIDISPDGTKLWTGG 1441
Query: 669 YDGSFFAWSL 678
D + +W L
Sbjct: 1440 LDNTVRSWDL 1411
>19140
Length = 573
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -3
Query: 602 GHPLPTNAMIISDQFNLLITGGQDGSIYLRNLEKLSEFQQIKSHNWKINGVSTLDFSKKY 661
GH A++++ ++G DG+I L +L + + H+ GV L ++ +
Sbjct: 493 GHTDNVKALVLNRDGTQCLSGSSDGTIRLWSLGQQRCVATFRVHD---EGVWALQANESF 323
Query: 662 KLLYSGGYDGSFFAWSLD 679
LYSGG D W+ D
Sbjct: 322 TTLYSGGRDHQ--VWATD 275
>04358
Length = 2430
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 619 LITGGQDGSIYLRNLEKLSEFQQIKS-HNWKINGVSTLDFSKKYKLLYSGGYDGSFFAWS 677
L+ G G +++ +L L E + ++S + V L + K+ + L +GG D WS
Sbjct: 2053 LVAGTHTGDLHVLDLSDLEEVKVVRSLSGGHTDTVRCLHWDKQTQTLVTGGEDSMLCLWS 2232
Query: 678 LDKVSFQN 685
D Q+
Sbjct: 2233 SDASGIQS 2256
>01249
Length = 1743
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Frame = -1
Query: 367 LENQNVVI---TVTQNSYIYFWDIEKKIQVSTFKLNCTIVCGDIHPNSKTLILGSSSG-- 421
+EN +++ + Q + WDI+ + V TFK + G + +LG++
Sbjct: 1725 MENHEILLATESTGQQWSVAAWDIQSRSSVRTFK-GQALAAGCLCLRCGHTLLGAAQNKP 1549
Query: 422 VIRILDISNLNGVHLLKQIKVLKDKPVSNLHFNPDGSMFFVSSTESKKIYLINSTKYNII 481
VI + +S + Q K++ VS L +PDG F ++ S+KIY+ T +++
Sbjct: 1548 VIHVWPLSKKDE----SQHKIVCPGKVSVLVVSPDG--LFCLASISEKIYIWEMTGGSLV 1387
Query: 482 GYIA 485
G ++
Sbjct: 1386 GLLS 1375
>19949
Length = 903
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 382 IYFWDIEKKIQVSTFKLNCTIVCG-DIHPNSKTLILGSSSGVIRILDISNLNGVHLLKQI 440
+ WDI +K + T+K + VC P+ + + S G++++ D L LL +
Sbjct: 65 VKLWDIRRKGCIYTYKGHTGCVCCLRFSPDGRWIASASEDGLVKLWD---LTAGKLLTDL 235
Query: 441 KVLKDKPVSNLHFNP 455
K+ +D V+ + F+P
Sbjct: 236 KLHRDA-VNTIEFHP 277
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +2
Query: 373 VITVTQNSYIYFWDIEKKIQVSTFKLNCTIVCG-DIHPNSKTLILGSSSGVIRILDISNL 431
+ + +++ + WD+ ++ KL+ V + HP+ L GS+ ++ D+
Sbjct: 164 IASASEDGLVKLWDLTAGKLLTDLKLHRDAVNTIEFHPHEFLLASGSADRTVKFWDLETF 343
Query: 432 NGVHLLKQIKVLKDKPVSNLHFNPDGSMFFVSSTESKKIY 471
+ + + + ++ F+PDG + S ++ K+Y
Sbjct: 344 QLISTTEP----EANSIRSILFHPDGVCLYSGSKDTLKVY 451
>06660
Length = 979
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 816 INGLKSKYLVYNYHIRKRTADEERKLKIVKDLRRIEIREQKARKEAKD 863
+ L K VYNYH+ K + I +DL + ++E++ +KE D
Sbjct: 93 LGNLNEKIQVYNYHVVKNERI*AKYKAIERDLNKWRVKEEERKKETDD 236
>02147
Length = 1547
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 604 PLPTNAMIISDQFNLLITGGQDGSIYLRNLEKLSEFQQIKSHNWKINGVSTLDFSKKYKL 663
P+ + ++ S++F + GG+D +Y + E E + K H V + FS +L
Sbjct: 674 PISSASLHQSERF--FVAGGEDFKMYKFDYETGKEIESFKGH---FGPVHCVRFSPDGEL 838
Query: 664 LYSGGYDGSFFAW 676
SG DG+ W
Sbjct: 839 YASGSEDGTLRLW 877
>21921
Length = 1341
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Frame = -1
Query: 403 VCGDIHPNSKTLILGSSSGVIRILDISNLNGVHLLKQIKVLKDKPVSNLHFNPDGSMFFV 462
+C D P + L+ GS G IR ++S+ +K ++V V+++ +NP+ S+ V
Sbjct: 465 ICPD--PTGQWLVSGSDDGTIRFWEVSS---GRCMKTLQV--GGCVTSVAWNPNPSLCVV 307
Query: 463 SSTESKKIYLIN 474
++T + + LIN
Sbjct: 306 AATLNTTVLLIN 271
>17266
Length = 480
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = -1
Query: 602 GHPLPTNAMIISDQFNLLITGGQDGSIYLRNLEKLSEFQQIKSHNWKINGVSTLDFSKKY 661
GH NA+ + TG D + L ++ E + SH+ I G++++ FSK
Sbjct: 339 GHESDINAITYFPNGHAFATGSDDATCRLFDIRADQEIG-MYSHDNIICGITSVAFSKSG 163
Query: 662 KLLYSGGYD 670
+LL GGYD
Sbjct: 162 RLLL-GGYD 139
>04209
Length = 1154
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 113 VPKFEIQVYDLETGQRLSGTNSSIPLRN-KFIKAQFSPSKDTTFCVLYENNLVLC 166
V F +Q ++ + G + S L + K K+ FS SK CVL ++ VLC
Sbjct: 245 VVSFGLQTWEFDRGTSAEDSGGSKSLSH*KMFKSTFSVSKTVKSCVLTDDIKVLC 409
>15949
Length = 368
Score = 29.6 bits (65), Expect = 10.0, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 235 EYLVEFFVLTQKHLIIILQNGKFEWIYKYDPANLN--EDEIKPFKLEKTYLYDEEKLVNI 292
EY+ E+ ++ K +I + W +K +L E + PF+LEK L+ + LVN
Sbjct: 33 EYIFEYNIMVGK---VITKTTTIMWFHKVTMKSLYLYEKVLSPFRLEK*RLHRVDTLVNN 203
Query: 293 LYNQTYSKLYA 303
L++++ + Y
Sbjct: 204 LHDKSSTINYG 236
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00444330__3704.m00022ribosomal_protein_S16_containing_protei
n
(458 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03298 34 0.10
>03298
Length = 2006
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = -3
Query: 369 YYEIPQIYDPATQANKAYNLTSVTDKLNPVKREYAHFMFKNVMGR 413
++++PQI P + ++LT + D ++ + H + +N++GR
Sbjct: 210 FFQLPQILPPTGPCSDPHDLTGIWDHVHKLDLHSGHDLHENLLGR 76
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00684790__3732.m00038ATP_synthase_F1,
_delta_subunit_family_protein
(219 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06235 33 0.11
16479 29 1.5
00708 26 9.6
>06235
Length = 529
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +2
Query: 120 ENKRLDSLPKIAEKYMDYYRILNKQESITIISAQELTAA---EKQKVEQGLKKGNANVQF 176
+N R+ + + + + T+ +A+ L +A E + QG K +
Sbjct: 68 DNGRIARIGGVLSSFTQLMSAHRGEVVCTVKTAKALDSAAMSELKAALQGFLKKGETIHL 247
Query: 177 TVVYQVDPAILGGLQMYSGNNFLDCSLLSRV 207
T +VDP+++GG+ + G+ ++D S+ +++
Sbjct: 248 TT--EVDPSLIGGMVVSIGDKYVDMSMATKI 334
>16479
Length = 463
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 21/27 (77%)
Frame = +2
Query: 181 QVDPAILGGLQMYSGNNFLDCSLLSRV 207
+VDP+++GG+ + G+ ++D S+ +++
Sbjct: 347 EVDPSLIGGMVVSIGDKYVDMSMATKI 427
>00708
Length = 1835
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Frame = -1
Query: 50 VLFSSASSNKSLNKVAEDMKYFNQL---------YKESEVFKSFLNNVSLKRNQQRDIIS 100
+++S+A N LNK+ E + YF + ++SEVF SF ++R Q +
Sbjct: 395 LVYSNADINLYLNKIVERISYFEWVAIFE*YMRDIRKSEVFHSFF----IRRFAQTS-VE 231
Query: 101 ALGKTNFN 108
G+ F
Sbjct: 230 VFGRRVFT 207
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00938940__170.m00073hypothetical_protein
(154 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
16194 32 0.11
28268 29 0.67
23632 28 2.0
17118 27 2.4
35650 26 8.1
30755 25 9.9
>16194
Length = 652
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -3
Query: 87 RIYANKKMVFWP----IPIVGALGYLY-FQPVFFQKSNKRFFDMCNVGEEYYLGRERNKI 141
R++ KKMVFW PIV L F+ V + +N F+ +C+ + Y G ER+
Sbjct: 242 RLHMPKKMVFWAHVSLCPIVSLCSVLIGFRVVGWTLNNMNFWGLCHCAQSSY-GSERSAG 66
Query: 142 L 142
L
Sbjct: 65 L 63
>28268
Length = 657
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 32 RKDFVKKYIVDFDTTLYKTQVERDWAYIAKRE 63
R+ F I DTTL++ E +W+YI +RE
Sbjct: 649 RQVFAFNQIQSRDTTLHRLGTELEWSYIGQRE 554
>23632
Length = 724
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 44 DTTLYKTQVERDWAYIAKRE 63
DTTL++ E +W+YI +RE
Sbjct: 381 DTTLHRLGTELEWSYIGQRE 322
>17118
Length = 650
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 112 PVFFQKSNKRFFDMCNVGEEYYLGRERNKI 141
PVF SNK FF MC E +L + R ++
Sbjct: 250 PVFLLTSNKFFFYMCMGATEKFLKKIRLQV 161
>35650
Length = 1145
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 91 NKKMVFWPIPIVGALGYLYFQPVFF 115
N +VFWP PI+G +L F FF
Sbjct: 974 NVPVVFWPYPILGVKFFLSFH*PFF 1048
>30755
Length = 1137
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 87 RIYANKKMVFWPIPIVGALGYLYFQPVFFQ 116
RI+ ++ F+ I+ ALGYL+ Q + ++
Sbjct: 17 RIFTEERTRFYGAEIISALGYLHSQGIIYR 106
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00543590__3729.m00014hypothetical_protein
(721 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
13212 35 0.14
31432 32 0.68
30755 32 0.90
01707 29 6.5
>13212
Length = 1067
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%)
Frame = -1
Query: 133 ILYSIVSAAYYLEKNNLIPLTDVRPSTVYFTLKGEVKLMPFGIFPEDISGYAKCFSQSEQ 192
+ + + A +L ++++I D++ V T+ GEVKL FG+ ++ K +
Sbjct: 965 VCHEMCMALDFLHRHHVI-HRDIKAGNVLLTIDGEVKLADFGVSAKNTQTQQKRDTFIGT 789
Query: 193 SYLSPEQIEEMRKRKQVPDVNQVKSDVYSIGMTMLACATLQ 233
Y ++ K P K+D++S+G+T++ A ++
Sbjct: 788 PYWMAPEVVLCETLKDTP--YDFKADIWSLGVTLIEFAQIE 672
>31432
Length = 456
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 498 QSGVQYVQTTTSPYHPGQSQIIAQYS 523
+S +++V T TSP HP QSQ++ Q S
Sbjct: 378 RSSIEFVSTMTSPSHPDQSQLMTQIS 455
>30755
Length = 1137
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = +2
Query: 137 IVSAAYYLEKNNLIPLTDVRPSTVYFTLKGEVKLMPFGIFPEDIS--GYAKCFSQSEQSY 194
I+SA YL +I D++ + G +K+ FG+ EDI+ K F + + Y
Sbjct: 59 IISALGYLHSQGII-YRDLKLENLLLDKDGHIKVADFGLCKEDITYGRTTKTFCGTPE-Y 232
Query: 195 LSPEQIEEMRKRKQVPDVNQVKSDVYSIGMTM--LACATLQTSPSWYNYD 242
L+PE +++ + V D + G+ M + C L +YN D
Sbjct: 233 LAPEVLDDNDYGRAV--------DWWGTGVVMYEMICGRL----PFYNRD 346
>01707
Length = 757
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 133 ILYSIVSAAYYLEKNNLIPLTDVRPSTVYFTLKGEVKLMPFGIFPEDISGYAKCFSQ--S 190
I+Y + A + + N I DV+P + T +G+VKL FG F ++G ++ +
Sbjct: 376 IIYQTLLAVNFCHQYNTIH-RDVKPENILITRQGQVKLCDFG-FARILTGPGDEYTDYVA 549
Query: 191 EQSYLSPEQI 200
+ Y +PE +
Sbjct: 550 TRWYRAPELL 579
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01188360__268.m00029hypothetical_protein
(162 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08371 32 0.14
07047 29 0.82
05236 29 0.93
16548 27 2.8
>08371
Length = 1432
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 65 SFYNKQH--VEQIPTIDFNEWKSVISTQGLVDKVKENYESL 103
+F NK H E +P IDF +K+ + L D+ ++ YE++
Sbjct: 1316 NFINKVHQFPEALPAIDFAAYKARLPNPALADQFQKAYEAI 1194
>07047
Length = 1736
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 56 YCTQLSSLVSFYNKQHVEQIPTIDFNEWK 84
YC Q L+S Q V Q PT FN W+
Sbjct: 859 YCRQKKRLMSLQTLQGVLQQPTRRFNHWQ 945
>05236
Length = 1174
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 56 YCTQLSSLVSFYNKQHVEQIPTIDFNEWK 84
YC Q L+S Q V Q PT FN W+
Sbjct: 202 YCRQKKRLMSLQTLQGVLQQPTRRFNHWQ 288
>16548
Length = 1526
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 26 PSFQAPGNQDKILKWISTLSNKATTGESRSYCTQLSSLVSFYNKQ 70
PS +A K L W+ N T + +CTQ + L + + K+
Sbjct: 653 PS*RAVSVHSKTLGWLIKAHNSIHTQQPDRFCTQRNHLCALFKKR 519
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01164060__3796.m00115hypothetical_protein
(1339 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10127 35 0.15
13259 30 6.3
>10127
Length = 1189
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Frame = +2
Query: 349 RNARDKERREAELRQKINQELLEARRQQQYEKEQRLQEQAKNDRDEFQRIIQAQKQEREI 408
+ ARD+E +EA R++ + EARR+ ++E+ L++ A +R +A + +RE
Sbjct: 866 QRARDQEIQEARARREQVLQAAEARREAGLKREKELKKAA-------EREFEAARAKREA 1024
Query: 409 EIKLQIEREQQIKKHADELRKQIALNEEKIKQDQRNRLEEGKK--IRDQLQQQKKML 463
E++ Q E Q ++L+++ L E + R LE GK+ +R +L+++++ +
Sbjct: 1025ELRRQTELLQH-----EQLQREAMLTREA---ELRXELETGKEADMRKELEREREAI 1171
>13259
Length = 1751
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 338 LRAKRAMEQNERNARDKERREAELRQKINQELLEARRQQQYEKEQRLQE-QAKNDRDEFQ 396
LR +++N N + + + EL+Q INQ LEA QYEKEQ ++ A D E
Sbjct: 1424 LREAHELKKNNNNGEEXQLDKEELQQAINQANLEASA--QYEKEQAVKAVNAAIDSGEAD 1597
Query: 397 RIIQA 401
++++A
Sbjct: 1598 QVLKA 1612
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00190820__3697.m00155Calpain_family_cysteine_protease_contai
ning_protein
(713 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
23206 34 0.16
30449 29 5.2
00222 29 7.4
>23206
Length = 1611
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = -3
Query: 292 YYVRLCLDGVWKYISVDDQIPCVRKSKATKTEPSFLDLRPISLQSHDVWPHLLMKAYAK 350
Y VRL G W+ I VDD +P + L P + SH++WP LL KA K
Sbjct: 853 YIVRLFWMGCWRKILVDDLLPFDENDQL---------LLPATTLSHELWPMLLAKAIIK 704
>30449
Length = 457
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 301 VWKYISVDDQIPCVRKSKATKTEPSFLDLRPISLQS 336
V+ + DDQ+P +R +EPSF +RP ++++
Sbjct: 309 VFHLVITDDQLPWLRSINLQHSEPSFYLVRPNNVET 416
>00222
Length = 1373
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 588 ILDYEKNIIDTVLSYYGEQPINWSKVNFNKEPNILEKAMQQMCYEKGTKKDIT 640
+LDY+ N ++LSY+ + NW PNI M ++CYE +T
Sbjct: 495 VLDYKHNYSCSLLSYFQLKSANW--------PNI---PMPEICYEMKNVTHVT 370
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00637010__91.m00119Viral_A-
type_inclusion_protein_repeat_containing_protein
(1225 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05309 35 0.16
01066 32 1.1
28330 32 1.8
02092 31 2.9
04603 30 5.0
>05309
Length = 2347
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Frame = +1
Query: 963 QREQRINDLENENAQLRRRIEDLLGQVNDEKVKKSAKDNRSEQELAELRAKLAESQNNNQ 1022
++ +R+ L + LRR++++ +V +R + + EL K+A+ Q N+
Sbjct: 241 RKRRRLTHLSADEKMLRRKLKN--------RVAAQTARDRKKALMQELEEKVAQLQEENK 396
Query: 1023 KLVFENTRLSEQLQLIAKDNEKLR 1046
L+ ENT+L I K+NE L+
Sbjct: 397 LLLKENTQLRLNQSAIQKENELLK 468
>01066
Length = 1625
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +1
Query: 616 ELEQVNIQLRQQIEVLQRALQDLQNQVNDEKVKKSRQQNNL 656
ELE +N+ LR++ E LQR ++ +++ +ND ++K+R Q L
Sbjct: 1228 ELESINVXLREKCEELQREVKCMKDLIND--IRKARGQAAL 1344
>28330
Length = 935
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +3
Query: 349 ERNQQIQFLNQKVSAFEDRIREQEGLILQLQKTIQDLQGQLENNERVKRSAKNDNQQLED 408
E Q L Q+V+ DR+ + ++ L + ++ L LE E + + QQL
Sbjct: 33 EELSQGDLLRQQVTDTVDRVNMMDQVMPVLHREVEQLLRSLEQMESRAHADRLRTQQLVT 212
Query: 409 KINQLTQENARLIDQIRLRDEEIS--KLRVQYTQFSQYE 445
++ QLT + L + ++D I+ ++R+ +F++++
Sbjct: 213 QVEQLTGQVRTLERTLAMKDATIAEHEVRMHAMEFARFD 329
>02092
Length = 424
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +1
Query: 616 ELEQVNIQLRQQIEVLQRALQDLQNQVNDEKVKKSRQQNNL 656
ELE +N+ LR++ E LQR ++ +++ +ND ++K+R Q L
Sbjct: 40 ELESINVNLREKCEELQREVKCMKDLIND--IRKARGQAAL 156
>04603
Length = 1101
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -2
Query: 541 LIESNERLNQLVNQKEAELQKLRLEVNQLNIRIT 574
LIE NE L + V+ K++E+ KL E+ LN RIT
Sbjct: 845 LIEDNEELKRDVDDKKSEIAKLESEMQGLNRRIT 744
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00069400__3707.m00265NPL4_family_protein
(1157 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
37261 35 0.19
19799 34 0.42
02597 32 1.5
00400 30 6.9
30885 30 8.4
12429 29 9.0
>37261
Length = 893
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +3
Query: 636 ISALAQLPVSDFKIFYDQNYSSTAQLLSPDSTSLSLIPKLKNGVE----LFLKVQAQMAN 691
+SA+A + + F + + +S + + PDS P ++NGV+ LFL +
Sbjct: 117 MSAMATIIFAGFLLLGSASSASMLKTMFPDSYP----PMVQNGVDPGQPLFLTPYLKNGQ 284
Query: 692 PTLEKKRSLSPTL---KAQNQQNLLSVNCNHSLNQRCINCPPQNN 733
P + ++ SL +L ++ L+VN H N P QNN
Sbjct: 285 PQIARQMSLVSSLPGWSGKSYSGYLTVNATHQSNLFFWFFPAQNN 419
>19799
Length = 468
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 31/143 (21%)
Frame = -2
Query: 1010 KDNPSEIKPEVYMVSDQAQVLEKNN-VFGDSERRKFMKVRESKDERDVLPSIIVSGKQ-- 1066
+DN ++I E Y VS+Q LE+++ + + + V+ES +E+ V P + GK
Sbjct: 452 RDNNNQIHFEGYQVSNQCMALERDDCLIPTKDVPELGYVKESSNEQYV-PDVFYKGKDSY 276
Query: 1067 -------VNEFEPDFLLVNVAHGHSNHNKFSIVKHAD---FPVENRQEQNKS-------- 1108
++LLV++ + +++ FP ENR++ ++
Sbjct: 275 SNEVTHLARPLPVEYLLVDMPAAFPSDFQYTFKTQDSMNSFPAENREQMGETQDFGALVQ 96
Query: 1109 ----------WEKYSDFHLLIYL 1121
+ SDFHLL++L
Sbjct: 95 YMQQFSPSQFLQAMSDFHLLLFL 27
>02597
Length = 463
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Frame = +3
Query: 661 LLSPDSTSLSLIPKLK----------NGVELFLKVQAQMANPTLEKKRSLSP 702
LL+ DS+ + PK K N + L +K MAN TL+KK LSP
Sbjct: 264 LLNSDSSHMQFTPKYK*NKQINKMKINQLALIIKANFVMANSTLQKKGGLSP 419
>00400
Length = 612
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +3
Query: 72 IINYYCEDC--REFCCEYCIALGPH 94
+++ YC DC R CC++C+ G H
Sbjct: 192 LVSVYC-DCETRSLCCDFCLVFGTH 263
>30885
Length = 1090
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = -1
Query: 421 LYQLMFALIKKKKAEKGVDLEQIFQGYDKERSGYCSIIQFQYVLNTVLDLEIDYVERAT 479
LY+ I+ + ++ + L+ +FQ +D+ +G+ + +QF L T+L++ I E A
Sbjct: 850 LYEETMTRIRSRVQQRRILLKPVFQDFDRHNNGHITRVQFSQGL-TMLEIPISTPELAA 677
>12429
Length = 422
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 1106 NKSWEKYSDFHLLIYLAKLVDLETTL 1131
+KSW ++ + H I+ AK+VDL+TTL
Sbjct: 142 SKSWTRF-EHHQAIFCAKIVDLQTTL 216
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00394410__3813.m01517hypothetical_protein
(628 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28969 34 0.23
21632 29 6.9
>28969
Length = 520
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = -2
Query: 9 VDIQYLKQDNIGKVLAKGLAVLYQEKPKFPVDYLAKWLLNYSVSVNN 55
VD +Y+ Q ++G L LA + + +P PV+YLA+WL + +++
Sbjct: 492 VDGKYVAQ-HLGSALTLALAEIAERRPWDPVEYLAQWLYQHRRNLDQ 355
>21632
Length = 956
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 38/99 (38%)
Frame = -1
Query: 450 GILQNILYLLGYSMEEINIPGTHVLNWKEVKKILNESFINKVIEYNHQGPKPNKVKPYAL 509
+ +NIL L+ YS ++ TH I NE Y G +PY
Sbjct: 395 CVAENILLLIFYSTNLTHMQNTH-----STCIICNE----HTHTYERTGAVDIHSQPYF* 243
Query: 510 VNRITAKLEKYDKTQVEEYNIGYARLFKWLQDTCRLRKT 548
I + Y +T + + +I + LF WL R R T
Sbjct: 242 HFSIADVYKLYKRTYI*DIDINWMSLFSWLCSRNRARNT 126
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01043290__3807.m00227hypothetical_protein
(131 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06510 30 0.23
07680 28 1.1
28755 27 2.9
37884 27 3.3
03292 27 3.4
11033 26 4.5
11920 25 7.1
>06510
Length = 2037
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 94 CEEERFVFKACLRKVISLKKTDKHTSWDTAEVA 126
CE+ RFVF+ C V SL + + HT+ D A
Sbjct: 504 CEDARFVFEEC-GGVTSLDRLETHTNTDIQTAA 409
>07680
Length = 884
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +1
Query: 82 PLTKKNKQYLYECEEERFVFKACLRK----VISLKKTDKHTSWDTAEVANL 128
P + K+ +Y C + C R VISL+K + SW+T V ++
Sbjct: 367 PGRRMRKERMYICRRTPRSWSCCRRSSRIVVISLRKAPRTASWNTTVVRSI 519
>28755
Length = 601
Score = 26.6 bits (57), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 60 KLLEFDKVPFHPENIYNYTYMRPLTKKNKQYLYECEEE 97
K+ + V FH +N Y T R L KK L C E
Sbjct: 53 KVRIMNMVTFHTDNRYKNTSXRWLPKKEXNSLGRCRER 166
>37884
Length = 690
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -3
Query: 63 EFDKVPF--HPENIYNYTYMRPLTKKNKQ----YLYECEEERFVFKACLRKVISLKKTDK 116
FD+ F H Y Y++++ YLY ++ + K CL+KV+SL+K+ K
Sbjct: 337 SFDQSIFKLHDRIAYLYSFIKNRRFC*NFCF*FYLYFIKKSLYAQKTCLQKVLSLQKSAK 158
>03292
Length = 1176
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -2
Query: 51 IWPRLLTDGKLLEFDKVPFHPENIYNYTYMRPLTKKNKQYLYECEEERFVFKAC 104
+W ++L+D ++ + +H Y Y P+ + N Y+ E V +AC
Sbjct: 905 LWDKVLSDSTVMSLN---YHNYI*ERYVYQ*PMQENNYVYM*ELAHSHIVARAC 753
>11033
Length = 582
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 91 LYECEEERFVFKACLRKVISLKKTDKHTSWDTAEVANLQ 129
++ C F+F C R + LKK KH W+ V N++
Sbjct: 392 IFICSMTSFIFNRCTRNI--LKK--KHAIWNXYNVYNVR 496
>11920
Length = 931
Score = 25.4 bits (54), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 43 VIHPQWPTIWPR-LLTDGKLLEFDKVPFHP 71
V++P WPTI LLTD K D VPF P
Sbjct: 681 VLNPDWPTIGDHGLLTDLK----DVVPFSP 758
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00797930__135.m00083hypothetical_protein
(689 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12358 33 0.26
07814 30 3.1
10736 29 6.7
>12358
Length = 598
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +1
Query: 390 QNDELEQQLCSVVGGGQGVFF----YRTNPLPRLQVDNTSLWSLDQNSELPEDTSPEEQI 445
+ D +Q+ VGGGQG++F RT PRL+ + + D S LP P +
Sbjct: 406 RRDHAVRQVHERVGGGQGLWFRHIQSRTTDHPRLEGHSQVVMVDDSPSLLPRPCPPMSSL 585
Query: 446 INC 448
++C
Sbjct: 586 LDC 594
>07814
Length = 1888
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 400 SVVGGGQGVFFYRTNPLPRLQVDNTSLWSLDQNS 433
+ GGG+ + R +P P QV +T++W L ++
Sbjct: 1038 TAAGGGEELRLVRVHPAPHRQVRHTAVWILRRHC 937
>10736
Length = 974
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 628 EQIENFQPPKRLGVDDIEEQLCDLPLEYYD-NDDGFWNDFIKEKLNRNNAA 677
E+ + +P +R+ DD+ L D+ L+ YD N+DG+ F +K N A
Sbjct: 316 EKTDTVKPSERVYTDDVISNLVDVVLKSYDKNEDGYVEYFEFKKYKENEPA 468
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00145440__3702.m00171conserved_hypothetical_protein
(388 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04879 32 0.34
07566 31 0.76
35873 30 1.6
18780 30 1.9
00130 29 3.5
07771 29 3.5
04234 28 6.7
05662 28 7.8
>04879
Length = 1585
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 242 LGNWAVKNGIYTGRAHFIFPEYSRWVHLATNTLPMHKVCARVKGFGH 288
L +++ + I+ PEY +V L NT+ +H C R+ FG+
Sbjct: 388 LADFSQSSSIHCMNKCACSPEYCHFVQLELNTVFVHTQCTRLHSFGY 248
>07566
Length = 1355
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 243 GNWAV--KNGIYTGRAHFIF-PEYSRWVHLATNTLPMHKVCARVKGFG 287
NW + KN + + + + PE +VH NTL +H C R+ FG
Sbjct: 673 ANWLISAKNSLKHCKNNCVCSPENCHFVHCNVNTLIVHAECTRIHSFG 530
>35873
Length = 435
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +2
Query: 86 RNVWLLNPRNFGNSDRHPSF--DLQEMSDDVMRFMYSQKISMA----TLGGHGIGGKIAL 139
R V+ + FG S R PSF + E D ++ + + + +M L GH +GG ++
Sbjct: 143 RPVYAFDVLGFGRSSR-PSFSHNPSEAEDMFVQSIENYRKAMGLEKFILLGHSLGGFLSA 319
Query: 140 AVGCYHAERVTGVFSIDSSPMDQRYHEAFKEFKGYVNA 177
+ H + + + +D M++R E + +V A
Sbjct: 320 SYALRHPQHIKHLILVDPWGMNERPPEGRRHLPLFVRA 433
>18780
Length = 1961
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 261 PEYSRWVHLATNTLPMHKVCARVKGFGH 288
PE ++V NTL +H C R+ GFG+
Sbjct: 702 PENCQFVQCDLNTLIVHAECTRLHGFGY 619
>00130
Length = 360
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 261 PEYSRWVHLATNTLPMHKVCARVKGFGH 288
PE +V L NT+ +H C R+ FGH
Sbjct: 300 PE*CHFVQLELNTVFVHTQCTRLHSFGH 217
>07771
Length = 1272
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 261 PEYSRWVHLATNTLPMHKVCARVKGFG 287
PE +VHL NT+ +H C R+ FG
Sbjct: 1036 PE*CHFVHLELNTVLVHTQCTRLHSFG 956
>04234
Length = 1991
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 63 EACDLTANWIPFFTNPQY 80
++CDL +NW+PFF ++
Sbjct: 69 QSCDLLSNWVPFFLKLRF 16
>05662
Length = 730
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 184 KTWSDKDVKVFLKENIKDPKWRSIFTNNISKNAKTQSDSFNFEINYLN 231
K W+D ++ FLK WR+ + ++ N S NF + LN
Sbjct: 525 KEWTDMAMQGFLKTTTDRTMWRTTSXSFLTHNNNLXSSRLNFHFHSLN 382
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00564280__3721.m00046ribosomal_protein_L4/L1_family_protein
(358 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
22203 32 0.39
05735 31 0.96
38354 30 2.2
05194 29 3.1
30750 28 5.2
00041 28 5.4
31849 28 6.0
>22203
Length = 450
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%)
Frame = +2
Query: 5 QRTFKSLSCLSQVKRAFSITNYSIKPVKYELKINEQPGKMPILVRKPDEILVKQWWSQSP 64
T +L CL+ + AFS+T +PV L N P + + + IL+ QW + P
Sbjct: 74 AHTATTLECLT*MT-AFSVTLA--RPVLVRLSENPTPSALQAIFVAGELILINQWMAV-P 241
Query: 65 FEKTQPLRVPVLKFLA 80
E PL + VLK L
Sbjct: 242 RETCVPLALTVLKGLG 289
>05735
Length = 755
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 82 NGQAYTGKTVDLDHDIFNVPLRRD 105
NG+ + KT +D ++F PLRRD
Sbjct: 442 NGKMHNNKTTKIDMNVFQSPLRRD 513
>38354
Length = 805
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 40 QPGKMPILVRKPDEILVKQWWSQSPFEKTQPLRVPV 75
+P +P ++RKPD V+Q S S E+T+P VP
Sbjct: 695 RPFTVPQVLRKPDGKAVQQGQSSSDEEETKPRPVPA 802
>05194
Length = 1075
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 84 QAYTGKTVDLDHDIFNVPLRRDIVHSYVLWRQN 116
+ Y+G+TV H + L + +HS+V WR+
Sbjct: 411 RTYSGRTVTASHGSIS-RLHENFIHSHVFWRRG 316
>30750
Length = 322
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 91 VDLDHDIFNVPLRRDIVHSYVLWRQNRDEIK 121
VDL DIF + R D+VH +LW+++ I
Sbjct: 95 VDLHPDIFGIYPRVDVVHQNILWQRSYKRIS 3
>00041
Length = 1404
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 85 AYTGKTVDLDHDIFNVPLRRDIVHSYV 111
+Y G T LD I+NVP+R +V S++
Sbjct: 664 SYHGSTSRLDRQIYNVPMRARVVVSHM 744
>31849
Length = 502
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 89 KTVDLDHDIFNVPLRRDIVHS 109
+ +DLDHD+ VP+R +VH
Sbjct: 374 RLLDLDHDVRRVPVRHAVVHG 436
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00825290__3683.m00023hypothetical_protein
(291 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27515 31 0.45
13711 27 9.4
>27515
Length = 473
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Frame = +1
Query: 13 KTVYTHTSLIEESKQEQIQA---IYDKVPQWTNGGRFLGFWLSMEAVNRVQSVAK----- 64
KT YTH + K E IQA ++P +T G G + VN++ +
Sbjct: 49 KTKYTHHTKNRFKKHEMIQARDKXCSRIPSFTTGNNVTGLCIDQNNVNKIVTSTGPPYEL 228
Query: 65 ----LPIYYR 70
LP+Y R
Sbjct: 229 MNSLLPLYMR 258
>13711
Length = 1344
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 167 TSRMKAFFQIHLQTGQQLYIFAKILNTAGPKIQLKKNYEKQLQALIWVLP 216
++ K FF +H+ + +L+IF +LN +N++K +W +P
Sbjct: 1189 SAHSKLFFCLHIISSLELFIFRTVLN---------RNHQKLALFPVWSMP 1311
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00522240__3717.m00036hypothetical_protein
(384 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
25008 32 0.47
20122 29 4.1
12659 28 5.0
19665 28 5.6
>25008
Length = 1281
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -1
Query: 242 HSFHIPEVLNLTQQQTIKTFIENPELITICPISIIPLKCLNIQQNYYSSIGSL 294
H++ +P+VL + T TF++ E++ ++PL N Q +YY + G+
Sbjct: 327 HNYTMPQVLVNSSAATSSTFVQLGEMVF-----LLPLSAHNQQTDYYGTFGAF 184
>20122
Length = 570
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 179 WAGFSEEQCNKIIQMHPYIVDFN 201
W + QCNKII++H +I N
Sbjct: 81 WTDITVSQCNKIIRLHTFIKKLN 149
>12659
Length = 468
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 269 TICPISIIPLKCLNIQQNYYSSIGSLDLKHKY 300
TICPI P+ C ++Y D KH Y
Sbjct: 450 TICPI*HAPISCSQAVHHWYRRSRRYDTKHSY 355
>19665
Length = 698
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Frame = +2
Query: 171 KVKRVFTVW--AGFS----EEQCNKIIQMHPYIVDFNQEYLHDDLKLLLT 214
+V+ + T++ +GFS E +C+KII H + + +YLHD L L++
Sbjct: 56 RVQGMTTLYTESGFSNLKNERECHKIILFHKIVNNQTPDYLHDILPPLVS 205
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00136440__3698.m00137hypothetical_protein
(673 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
20795 33 0.48
>20795
Length = 781
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -1
Query: 428 QIGDNVFIGPNSYIQSSKINDNSFVGMGSTVSTGCNLXXXXXXXXXXXXPENTQVPSNQI 487
IGD+VFIG +S + ++++ +G + L P T VP +
Sbjct: 598 HIGDHVFIGEDSIVNAAQVGSFVHIGKNCVIGRRSVLKDCCSIADNTVLPPETIVPPFAV 419
Query: 488 WAGSPAQ 494
++GSP
Sbjct: 418 FSGSPGH 398
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00249730__22.m00199hypothetical_protein
(139 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
19034 29 0.49
>19034
Length = 701
Score = 29.3 bits (64), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = -1
Query: 1 MRKIAI----ILIACTVFCAANPQPESTENH 27
MR + I +++ C V+C NP P T +H
Sbjct: 479 MRVVPISSSFLILLCPVWCVPNPHPTPTPSH 387
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00794470__134.m00126hypothetical_protein
(158 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
32324 30 0.55
>32324
Length = 2043
Score = 29.6 bits (65), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 85 LRSGVPYYFRPKYVFTQKNQYNQDRNWGAMKKQIPLWL 122
R G +YF P + N RN+G K +P+WL
Sbjct: 612 FRHGRIFYFHP--CAADRGSGNSCRNFGGFKAAVPIWL 505
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00563990__3721.m00017HMG__box_family_protein
(263 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11933 31 0.59
>11933
Length = 1516
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Frame = +2
Query: 100 PKRIKPAFFYYYLE------KYDKT-EKLTESVKRLSKEFKQLSEQEQKIYKEKAAEDKK 152
PKR A+ Y+ K KT ++ E K S +++++ ++K ++E AA+DK
Sbjct: 644 PKRSTSAYXYFLAHCREVSAKQGKTISRIAEFTKECSAKWREMGGAQKKPFEESAAKDKA 823
Query: 153 RYQDECEKFVKQHQDLIXXXXXXXX-----XXXXXXXEQFSQNPQSTLKKIASSWKQLSE 207
RY E + + D + + + L+ W+ +S
Sbjct: 824 RYDKEMALYKGKSTDPNKPKRPMTAYFLFLGDFRIKMKNRGVDHKEILRLAGEEWRNMSA 1003
Query: 208 EQKKQYEEKVIKINEEQKQKLAEFQK 233
E KK YE++ ++ ++ + ++ E++K
Sbjct: 1004EDKKPYEKRSVEAGKKYEVEMEEYRK 1081
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00563990__3721.m00017HMG__box_family_protein
(263 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11933 31 0.59
>11933
Length = 1516
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Frame = +2
Query: 100 PKRIKPAFFYYYLE------KYDKT-EKLTESVKRLSKEFKQLSEQEQKIYKEKAAEDKK 152
PKR A+ Y+ K KT ++ E K S +++++ ++K ++E AA+DK
Sbjct: 644 PKRSTSAYXYFLAHCREVSAKQGKTISRIAEFTKECSAKWREMGGAQKKPFEESAAKDKA 823
Query: 153 RYQDECEKFVKQHQDLIXXXXXXXX-----XXXXXXXEQFSQNPQSTLKKIASSWKQLSE 207
RY E + + D + + + L+ W+ +S
Sbjct: 824 RYDKEMALYKGKSTDPNKPKRPMTAYFLFLGDFRIKMKNRGVDHKEILRLAGEEWRNMSA 1003
Query: 208 EQKKQYEEKVIKINEEQKQKLAEFQK 233
E KK YE++ ++ ++ + ++ E++K
Sbjct: 1004EDKKPYEKRSVEAGKKYEVEMEEYRK 1081
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00220710__3701.m00182hypothetical_protein
(233 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29199 30 0.61
03165 30 1.2
06589 29 1.6
08817 28 2.3
>29199
Length = 442
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -1
Query: 50 NQSASQYVSEVKQQLKSFSPSYDAI--ICVAGGWNGGSIKDSNVFETY 95
N + SE + S+SP + +CV GW G S + VF TY
Sbjct: 244 NACVLYFKSESTSGVCSYSPGFHLFYKLCVVPGWFGHSCTERRVFATY 101
>03165
Length = 2373
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 1 MASQRTLLVIGGCGNLGRSVISKF 24
MA++ LVIGGCG LGR + +
Sbjct: 86 MAAKTDYLVIGGCGFLGRHLCEQL 157
>06589
Length = 721
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 1 MASQRTLLVIGGCGNLGRSVISKF 24
MA++ LVIGGCG LGR + +
Sbjct: 401 MAAKTDYLVIGGCGFLGRHLCEQL 330
>08817
Length = 2525
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +1
Query: 146 KVAVHSLASTMAVSKDMPEGSTVVTILPKVIDTPQNREA-----MPDSDFSTWAKPEQIS 200
K + ++ +++A S ++ ST +L K + +A P DF+T + EQI+
Sbjct: 1279 KDSREAVTASVAESTNLSTASTEEVLLEKALAVSTTGDAASTAATPSMDFNTMTEDEQIA 1458
Query: 201 GLLKMWAEGNNLPKTGSFAM 220
L++ E + TG+ M
Sbjct: 1459 YALRLSMENTGVEDTGAAPM 1518
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00268000__3690.m00080hypothetical_protein
(346 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
18928 31 0.65
23439 28 7.7
07656 28 7.7
19912 27 8.4
>18928
Length = 955
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 23 RKIQNLIIRQQLEMSGLLRNFEKLVCQSQLSKAGHKLLLRSPNSTL 68
RK+ L+ R Q S L R ++ C S AGH+ + +P S L
Sbjct: 715 RKMAELLERTQAATSPLSRTSSEIGCSSSDGSAGHQHVPEAPASPL 852
>23439
Length = 489
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 194 IHNLQDILSAFVKLNYVSDKELLKRLITALSQKDFPNQLQPVT 236
IHN Q + S + + S K L K LIT + + + QPV+
Sbjct: 50 IHNTQKVYSQYESICAASVKVLTKSLITHFTHRLLNSMRQPVS 178
>07656
Length = 1039
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 194 IHNLQDILSAFVKLNYVSDKELLKRLITALSQKDFPNQLQPVT 236
IHN Q + S + + S K L K LIT + + + QPV+
Sbjct: 432 IHNTQKVYSQYESICAASVKVLTKSLITHFTHRLLNSMRQPVS 304
>19912
Length = 865
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +2
Query: 58 KLLLRSPNSTLHPTAFYYKRNSSQRLANEMDVFQLGLAAAALTRQANNYAQLLDQVDKEA 117
KL+ ++ L F+ K + ++ D F+ GL A++ + LLD++D++
Sbjct: 638 KLMAYIDSNNLRLVDFFNKFDKEGTMSITRDQFRQGLTEASIPLAGDEVDFLLDELDRDG 817
Query: 118 VREEVQERITQNHSDL 133
E + H+D
Sbjct: 818 DGEINYSELVIGHTDF 865
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00456790__3712.m00071hypothetical_protein
(119 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01200 28 0.66
23178 28 0.76
06194 26 4.4
25664 26 4.9
00469 25 6.8
35197 25 7.7
>01200
Length = 2147
Score = 28.5 bits (62), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -1
Query: 61 YYPFLWQFFILGTSFVWFH---VC-YDPWLAIYQANNAHRSL 98
+YP W++F L +V+FH +C +D + IYQ N R +
Sbjct: 1580 FYPKNWKYFFLLQKYVYFHDE*ICIFDKSILIYQPQNCSRCV 1455
>23178
Length = 2165
Score = 28.5 bits (62), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = -3
Query: 32 LRKQPQIVGKINADPKVKKFWVFLRE--NVQYYPFLWQFFILGTSFVWFHVCYD------ 83
R +P G I + V+ V R +V Y+P +W FF+ G FV+ + CYD
Sbjct: 405 FRNKPISFGSILSSVHVEAISVNKRCFFSVFYFPPIWTFFLPG--FVYEYDCYDEVF*FV 232
Query: 84 PWLAIYQ 90
WLA Y
Sbjct: 231 EWLASYS 211
>06194
Length = 1414
Score = 25.8 bits (55), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 61 YYPFLWQFFILGTSFVWFHVCYDP 84
YY ++WQ+ GT +W + C D
Sbjct: 999 YYSYIWQYAHNGTVVIWLYACNDT 1070
>25664
Length = 915
Score = 25.8 bits (55), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = -1
Query: 4 GKLIFNNIKEYTPSWIKTIPYSQVTKPILRKQPQIVGKINADPKVKKFWVFLRENVQYYP 63
G IF+ + +++ + +KT+ + V + + +VG + P+V ++ L+ + YP
Sbjct: 561 GMGIFSQLADFSQNQLKTL-HE*VC--L*FRIVSLVG*LL*PPEVSANFLLLKSHA*LYP 391
Query: 64 FLWQFFILGTSFVWFHVCYD 83
L I G WFH C +
Sbjct: 390 LLVVEXIKGQCV*WFHYCVE 331
>00469
Length = 1881
Score = 25.4 bits (54), Expect = 6.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 59 VQYYPFLWQFFILGTSFVWFHVCYDPWL 86
+ Y FL +LGT V F+VC D +L
Sbjct: 1213 ISYLAFLLN**VLGTKRVHFYVCVDIFL 1130
>35197
Length = 978
Score = 25.0 bits (53), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 81 CYDPWLAIYQANNAH 95
C+ P+ A+YQ+NN H
Sbjct: 230 CHGPFQALYQSNNIH 274
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00578520__3733.m00012Viral_A-
type_inclusion_protein_repeat_containing_protein
(2645 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
18884 34 0.70
30332 33 1.1
15085 33 1.5
13299 33 2.0
35913 31 5.4
>18884
Length = 1579
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = -3
Query: 1962 TVDKLRAEAAQFGSLQYQVENLTRENEALKQRLAQTAETLSQQVAQNSELQRRVQQLESE 2021
T + L + AA SL + +L +L L+ A LS A S L + L +
Sbjct: 1037 TAEALSSLAAVLSSLAAVLSSLAAVLSSLAAVLSSLAAVLSSLAAVLSSLAAVLSSLAAV 858
Query: 2022 LQLLKMQLEG--EREDNKVKRSRNDK 2045
L L L G ER ++ + R RNDK
Sbjct: 857 LSSLAAVLSGRGERGEDSLSRLRNDK 780
>30332
Length = 401
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Frame = +2
Query: 1576 EALIQRINQLEQLLAEKDRELQNL----KVASQNVSILQMQLQQSNQDKENLIKRIRELE 1631
E L++ INQ+ +A+KD E ++L K Q++ +Q L S Q ++ + +R+ E
Sbjct: 65 ERLLKDINQV---IAKKDTEFRDLDSKVKAVQQSLQRVQEDLALSTQREKETVDALRDSE 235
Query: 1632 NILGERDKEIAGLRN 1646
+ILG+R EIA +R+
Sbjct: 236 DILGKRRAEIARMRD 280
>15085
Length = 571
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Frame = +1
Query: 2047 NEDLQKVIQQLQQE----IENLRREIQARDQKIAELSNASYTIQILQHEKEDLIRKLDAI 2102
N L+ + QQ QQE IENLRRE+ A + K L N + L K + R +
Sbjct: 97 NSVLKSIXQQQQQEFRLEIENLRRELDALNLKTRNLENPDKRVCFLCGRKGHIKRFCPST 276
Query: 2103 SQVYAKSQTDLQNSLQKVVVLSARVESSDEANKNLTAQVQILSQSLQNKDQELR---NLM 2159
Q D L K E+ DE + TA ++ S+ + LR +M
Sbjct: 277 PQT-----GDSNGILLK--------EAGDEGEEEFTAVTMSVTTSIPQEMDPLRRQEKMM 417
Query: 2160 IAY 2162
+A+
Sbjct: 418 VAH 426
>13299
Length = 1110
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Frame = -1
Query: 1845 VAELESKLQFFNNQIQ-TLNFSLEQKEKEKQALGQHLVELQQTIEQLRAENTQVAAFKYQ 1903
VAEL+ +LQ NN +Q ++ +Q E+EK Q ++ + QL QVA + +
Sbjct: 1095 VAELK-QLQETNNALQQNIDSVYDQLEQEKSKSSQSRKDVDSLVTQLADAKGQVAESREE 919
Query: 1904 VENLSRENEALKQRLVEQQQTID----KLRAEASQFASLKFQAENLQRENEALKQRLVEL 1959
+NL ++ +ALK+ L + + D KL A ++ ++++ Q E + + L+ L E
Sbjct: 918 CDNLQKQIDALKEELKTRDMSGDEVRSKLHASDTELSAVRLQLEQFIADKQKLESDLAES 739
Query: 1960 QQTVDKLRAEA 1970
++ ++ R+E
Sbjct: 738 RRQIEGERSEG 706
>35913
Length = 328
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = -2
Query: 1924 TIDKLRAEASQ-FASLKFQAENLQRENEALKQRLV 1957
TI K RAE S+ FASL+FQ+ ++R N++ +RL+
Sbjct: 255 TITK-RAEQSESFASLRFQSAGVRRHNDSTPERLL 154
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00289380__3688.m00115hypothetical_protein
(120 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
21682 28 0.76
02785 27 2.0
04963 25 7.8
10932 25 9.3
>21682
Length = 435
Score = 28.5 bits (62), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 2 TIFAETWEASEYQYRNKANLKTLPVNHLGKLAELKFDFVEYKAHQLIAC 50
T F + ++RN A+L+ LPV H L +FD +E + L+
Sbjct: 224 TSFKRHSRTGKARHRNGADLQVLPVPHGAALLS-QFDXIEGNSGTLVVV 367
>02785
Length = 785
Score = 26.9 bits (58), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 65 GLFKDFYRPECLDAQYYFKTCVELNAAY 92
GLFK+F RP C ++ Y C+ +Y
Sbjct: 477 GLFKEFSRPACEFSRMYRTECIMFEQSY 394
>04963
Length = 1456
Score = 25.0 bits (53), Expect = 7.8, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +2
Query: 47 LIACH--LYERMTIHCMNQYGLFKDFYRPECLDAQYYFK---TCV-ELN 89
L AC + ERM C+ +Y Y +C+D +YF TCV E+N
Sbjct: 584 LCACKS*VNERMNFQCLLKY-----LYSTQCVDKVFYFDQV*TCVREMN 715
>10932
Length = 1688
Score = 24.6 bits (52), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 25 PVNHLGKLAELKFDFVEYKAHQLIACHLYERMTIHC-MNQYGLFKDFYRPECLDAQYYF 82
P +H G L + A ++ CH +T+ MN+Y F+ P CL +YF
Sbjct: 786 PSHHTGSLLLV---ITPLTAQSILYCHN*PLLTVRXXMNRYFTQSQFFFPICLQLCFYF 619
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00117590__3812.m02469hypothetical_protein
(309 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12745 31 0.78
>12745
Length = 1532
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = -1
Query: 83 QRRSGDVKLHFDLGNYTISGKSWN-----FFTNVKTD 114
+RRSGDV + + N T+S WN FFT+ ++
Sbjct: 1448 RRRSGDVIIAWHCSNKTLSAPHWNTPVLVFFTSAPSE 1338
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00283850__3694.m00171hypothetical_protein
(198 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08572 30 0.82
>08572
Length = 509
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -1
Query: 135 DIKNSIHKYIQLIDDLKDYPEWQHKVREEIGYYAHMIYTSVNHDGNFPEIFKEFNKVDSL 194
D+ +I K L + + +W E + Y ++YT++ G+F E F FN L
Sbjct: 314 DLL*NIAKCCVLKISVINCSQWSVLSVENMCYS*JIVYTNLESSGSFAECFFYFN----L 147
Query: 195 YYFK 198
+YFK
Sbjct: 146 FYFK 135
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00439130__3708.m00091hypothetical_protein
(3232 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03529 34 0.82
19894 33 1.4
06474 33 2.1
26257 31 6.9
18367 31 7.9
13125 31 9.1
>03529
Length = 1538
Score = 34.3 bits (77), Expect = 0.82, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 22/101 (21%)
Frame = +3
Query: 986 CSQGCAACNKD-------GTCIQCQSGYSLQSNGTC-VKCGN---------NCLQCQQLY 1028
C C C D G C CQ GY + TC +KC N C QC +
Sbjct: 357 CVDRCGNCLNDEVCDXYKGHCSACQVGYHMP---TCTLKCANLTYGTNCNETCGQCHKQQ 527
Query: 1029 SGNQQVLICTQCMQGSSI-----DIQNSSQCLKCSLTCASC 1064
+ + + C QC +G + + ++ + C+ +C +C
Sbjct: 528 ACDHKTGHCQQCRRGFQMPFCKQECEDGFYGIDCAQSCGAC 650
Score = 32.7 bits (73), Expect = 2.8, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 8/150 (5%)
Frame = +3
Query: 1242 QCSQGFYD---YQNSQNCMNECALCNVYTKKCLMCKQGYYLNDSNICVNSQSGNIDYLNK 1298
+C QGFY NC+N+ +C+ Y C C+ GY++
Sbjct: 327 KCEQGFYGPGCVDRCGNCLND-EVCDXYKGHCSACQVGYHM------------------- 446
Query: 1299 VQPTLLTVNIPSISGCKSCPQFCQSCYEGNKYFSFTSTVLTDSQRIDYLKMFSASVICTQ 1358
PT T+ +++ +C + C C++ Q D+ + C Q
Sbjct: 447 --PT-CTLKCANLTYGTNCNETCGQCHK--------------QQACDH-----KTGHCQQ 560
Query: 1359 CMQGYILNQSLQICEP-----ICGNSCNQC 1383
C +G+ + Q CE C SC C
Sbjct: 561 CRRGFQMPFCKQECEDGFYGIDCAQSCGAC 650
>19894
Length = 447
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = -2
Query: 768 SAIFNSILCPNYCQICQPDDPYKCVQCNMPINQCTLDLSTC--------KGQDLQNNQQN 819
S I N ILCP YC CQP P++ + D ST G+ Q+N
Sbjct: 218 SYIGNDILCPRYCSTCQPAG-----VTTPPVSSLSPDSSTVTGVTGPSGSGEVCQDNLLY 54
Query: 820 QVYCSDIYGLCQSVTS 835
C+DI +C S S
Sbjct: 53 GASCADIDDVCISPLS 6
>06474
Length = 2466
Score = 33.1 bits (74), Expect = 2.1, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -1
Query: 1150 ATTSHLCYQCVQGYTLSSDQKSCVQ--GCSITNCQSCAQNQQGKVYCQICQNGMYYDNTQ 1207
A TS LC C G+T S+D K CV+ + ++ C N Q C G D+
Sbjct: 1833 ACTSSLC-ACASGFTASTDNKQCVKLIDAACSSNSECPLNAQCTSSTCSCDTGYTSDDGG 1657
Query: 1208 NLCTGS 1213
+C+G+
Sbjct: 1656 KICSGA 1639
>26257
Length = 466
Score = 31.2 bits (69), Expect = 6.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 777 PNYCQICQPDDPYKCVQCNMPINQCTLDLSTCKGQDLQNNQQNQVYCSDIYGL 829
PN CQ C+ Y C + I++C L LS C+G + N+ +C + G
Sbjct: 390 PNTCQ-CR--HGYIGPNCELDIDECALGLSACRGNSVCINEPGWYHCDCLQGF 241
>18367
Length = 460
Score = 31.2 bits (69), Expect = 7.9, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = +1
Query: 1181 CQSCAQNQQGKVYCQICQNGMYYDNTQN-----------LCTGSXXXXXXXXXXXXKKTG 1229
CQ+C N G C++CQ G Y D Q L TG+ +
Sbjct: 4 CQACKHNTMGH-NCELCQPGFYGDPRQGTDKDCQTCACPLMTGNNFFAESC------RAN 162
Query: 1230 NSATTTSYNQCLQCSQGFYDYQNSQNC 1256
+AT + QC+ C QG Y+ + Q C
Sbjct: 163 PTATDRAGYQCVNCQQG-YEGDHCQRC 240
>13125
Length = 870
Score = 30.8 bits (68), Expect = 9.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = -3
Query: 2606 LTVKQLNKNVSLTIYSSLMQQVKNITNYEY 2635
+ ++ + +++LTIYSSLM++VK I N+ Y
Sbjct: 706 MLIQNIPHDITLTIYSSLMERVKIIYNFVY 617
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00658950__3724.m00073Diphthamide_synthesis_protein
(112 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02216 28 0.85
10732 27 2.3
05118 26 4.8
04475 25 5.8
>02216
Length = 2619
Score = 28.1 bits (61), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 44 VLGKHVEPEKCLDKALVFVNCF-QKVRRDESAACQSAFN 81
+LG+H+ C+ L ++ C Q R D QSA+N
Sbjct: 382 ILGRHI*CTPCMKHKLQYILCLIQSQRTDNGPTSQSAYN 266
>10732
Length = 1818
Score = 26.6 bits (57), Expect = 2.3, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = -1
Query: 32 SERKAFNLCRSTVLGKHVEP-----EKCLDKALVFVNCF 65
S+R++ + +VLG+HV P C D ++VF F
Sbjct: 1002 SQRRSKSPLELSVLGRHVTPIRGTQHSCWDSSVVFSGAF 886
>05118
Length = 2239
Score = 25.8 bits (55), Expect = 4.8, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 18 ELLIHSIKGNKDCNSERKAFNLCRSTVLG 46
E IH+I+GN C KA +C + G
Sbjct: 814 ESFIHTIQGNTFCKQP*KAIPVCTGVLFG 728
>04475
Length = 1731
Score = 25.4 bits (54), Expect = 5.8, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 48 HVEPEKCLDKALVFVNCFQKVR 69
HV+P C K +F+ CF +
Sbjct: 718 HVQPFHCKRKIFIFLTCFHTAK 653
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00695590__3818.m00640Alternative_oxidase_family_protein
(301 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10703 30 0.95
08514 27 7.0
>10703
Length = 1581
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = -3
Query: 195 GYVALFSVLYFFYPRVCHRIVGYLE 219
GYV+L++ ++F +PR+C+R+ + +
Sbjct: 322 GYVSLWNFIFFLFPRLCNRLXSHXQ 248
>08514
Length = 1605
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 60 HPVWTEQEVKDVAITHLEPANFGDRFANFFIQSLRYGFDIMSGYKKVFPWQEK---GAPL 116
+P W +++ K + I + A + +RY DIM G K + W ++ GAP+
Sbjct: 1137 NPCWYDKDGKLLCIPYFYVAGVAKCGTTDLYKRVRYHPDIMEGELKEYHWWDRLRYGAPM 958
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00189300__3697.m00103conserved_hypothetical_protein
(164 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30297 29 1.0
01021 26 6.7
27571 26 9.5
>30297
Length = 822
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 62 YKKGRLSSRFRTKSSTWKRGPKTVLKAHKQSNHSALLKR 100
++ GRL ++F TW+ G + H+Q H A+L R
Sbjct: 433 FQGGRLMAQFPGVQVTWRNG*R---DGHQQGQHVAVLGR 326
>01021
Length = 2238
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 7 VGQALCKNTINVVK 20
+GQALCK T+N+V+
Sbjct: 512 IGQALCKRTLNLVE 553
>27571
Length = 414
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 37 DFNSLIFMPYQTFAFAQFPKM 57
DFN +I+ P Q F QFP +
Sbjct: 147 DFNYMIYAPDQLFMLVQFPYL 85
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00136220__3698.m00115hypothetical_protein
(299 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
00131 30 1.0
04286 27 7.6
>00131
Length = 1971
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +1
Query: 145 AAFPLFLAYTRIRDKTLDPDFKETYLRDMIYQNPEITKYFNEETIHVLDYEFEYLP---- 200
A +PL+++YTR ++ D +E + + P + N HV + + LP
Sbjct: 94 AKYPLYVSYTRGLNQFSDMTVEEYRHYNKMAPRPSPRNFCNN---HVTNRN-QSLPAFID 261
Query: 201 ----GYLCPEKFPEYQNKTWQFFNTDTAQAEGFFKFGDVES 237
GY+ P K W F T T + + F K GD+ S
Sbjct: 262 WRTQGYVTPVKDQGSCGSGWAFSATGTLEGQHFRKTGDLLS 384
>04286
Length = 1696
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 197 EYLPGYLCPEKFPEYQNKTWQFFNTDTAQAEGFFKFGDVESGATMTLK 244
+ P + P K + + W+FF +DT + F +FGD S +LK
Sbjct: 1382 SHSPIFNAPCKKKIFNSSVWRFFLSDTGKYCNFTEFGDWCSAYNGSLK 1239
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00295430__3692.m00116hypothetical_protein
(212 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
19771 30 1.0
01152 28 3.3
25539 27 4.4
01705 27 7.1
>19771
Length = 777
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +1
Query: 16 VDQHELKAEMIKELSHYYDHHDLSLFGKVQHFVEHLLEEKHHAKINTSNFDQ 67
++ H ++++ H+++H D++L + QH H + + H + N Q
Sbjct: 334 INHHPPVTKILQSFRHHFNHIDMNLLPRXQHIRRHFIXRRLHHLLRCMNXSQ 489
>01152
Length = 2068
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 161 NLVNEVVIQTPRRRALAKKYISAYGPQFFHDIV 193
NLV+ +V +T ++ KKYIS YG +V
Sbjct: 484 NLVSSIVYRTQKKHINNKKYISLYGIHLLSKVV 582
>25539
Length = 816
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 76 SKQISRTVFALKKIKTFNHDFFTSEEEMIL 105
S QISR + +LKKI + N D +++E+ L
Sbjct: 698 SSQISRQLLSLKKISSENIDHISTKEKTTL 787
>01705
Length = 1365
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 27 KELSHYYDHHDLSLFGKVQHFVEHLLEEKHHAK 59
+ ++ Y+D D++L G + F E +EE+ HA+
Sbjct: 1036 QSMAFYFDRDDVALPGFAKFFREASVEEREHAE 938
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00637600__91.m00178hypothetical_protein
(160 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26761 29 1.0
32001 28 1.5
32761 27 4.2
31231 27 4.3
14165 25 9.7
>26761
Length = 433
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 114 AFLPYKFTVEEATQYMNLCGCKFTTNPPFCDNKTCKCLTSG 154
AF+ + TV+ Y+N+C C FT C C+ SG
Sbjct: 24 AFMGFLATVKRQIIYLNVCKCSFTKLYAICTFSNCEL*MSG 146
>32001
Length = 822
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = +2
Query: 109 KHKGTAFLPYK---------FTVEEATQYMNLCGCKFTTNPPFCDNKTCKCLT 152
+HK +A P T ++ Y+ L GCK T N F + KT CLT
Sbjct: 47 RHKASAVTPVSRVAHTNCRSSTALISSPYLRLAGCKTTINNYFLELKTSICLT 205
>32761
Length = 358
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 116 LPYKFTVEEATQYMNLCGCKFTTNP 140
PY FT +Y LC KFT+NP
Sbjct: 218 FPYPFTELSIIRYAFLCISKFTSNP 144
>31231
Length = 473
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 100 STSQPFCDGKHKGTAFLPYKFTVEEATQYMNLCGCKFTTNPPFCDNKTC 148
S + C K K F+ Y F A N+C F +C+NK C
Sbjct: 89 SIDKLMCFCKIKERIFVMYLFVCVFAK*RANICDVSFCNQVMYCNNKDC 235
>14165
Length = 829
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 134 CKFTTNPPFCDNKTCKCLTSGNTE 157
CK+TT+ F DN CL + +TE
Sbjct: 498 CKYTTSGVFSDNGMLSCLITVSTE 427
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00418110__3833.m00774hypothetical_protein
(169 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11655 29 1.1
01675 27 3.6
04214 27 5.4
02670 27 6.0
29674 26 6.2
01307 26 7.6
>11655
Length = 826
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -1
Query: 83 TTEADRSDCYSASYQASQLVFPDTTKELPSCVSFYQYQKASQTDAPVNYNKY 134
TT + RSD A + QLV LP + FY +Q+ + +AP N ++Y
Sbjct: 628 TTVSRRSD---AIHHQHQLVERKEASLLPWALGFY*FQQVRRAEAP-NLHQY 485
>01675
Length = 768
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 103 FPDTTKELPSCVSFYQYQKASQTDAPVNYNK 133
F D + LPS +SFYQ Q + YN+
Sbjct: 541 FSDQPRPLPSTISFYQTNSTQQPNNRTTYNR 633
>04214
Length = 638
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 107 TKELPSCVSFYQYQKASQTDAPVNYNKYYQDCFLNAD 143
T + C+SF Y S T +N Y Q F+N D
Sbjct: 528 TNTMTRCLSFPSYSHTS*THFKFTFNNYNQQVFINPD 638
>02670
Length = 1552
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 113 CVSFYQYQKA-SQTDAPVNYNKYYQDCFLNADAVKAAKTSAYYYNSIYAPKYI 164
C ++ K S + P N N + C +N +KTS + N+IY KY+
Sbjct: 1123 CFKHLKFHKVNSNSFMPHNVNYHESRCMINV----TSKTSMWTINNIYDSKYL 1269
>29674
Length = 488
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -3
Query: 92 YSASYQASQLVFPDTTKELPSCVSFYQYQKASQTDAPVNYNKYYQDCFLNADAVKAAKTS 151
+S +AS L P +T LPS A N + C LNA ++ +K
Sbjct: 297 WSERRKASSLTPPLSTTALPS---------ALHMSMATNLTVLERCCKLNASSLMKSKNV 145
Query: 152 AYYYNSIYAP 161
Y+ I +P
Sbjct: 144 CAYFWKIRSP 115
>01307
Length = 2368
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +1
Query: 37 VDGTTVDETPKDN-----NTTVDPITPKNTVDIDDWQRCFQKLPVKMCDDL 82
V GT V E K +T P P +T + D W K+ +++C D
Sbjct: 763 VSGTFVQEKSKGKFEEFFRSTFTPNVPLSTFNADVWNESSVKIVLELCSDF 915
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00554190__72.m00149glyceraldehyde-3-phosphate_dehydrogenase,
_type_I_family_protein
(342 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
14102 30 1.2
>14102
Length = 1032
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%)
Frame = -1
Query: 182 HATTASQQVVDGPSKGGKDWRAGRAAKVNIIPSSTGAAKAVGLVLPNLKGKLTGMSFRVP 241
+T S+++ PSKG K R+ +AKV S+ P KGK++ + R
Sbjct: 288 KSTPRSRKIATPPSKGPKTARSA-SAKVESKKST-----------PKGKGKVSASTPRS- 148
Query: 242 TIDVSVVDLTVRLEKKTTYANICEAMEEASKGELNGILGYTKDEVVSQDFVHDQRT 297
R ++K E+ EEA+ E NGI KDEV D V ++T
Sbjct: 147 -----------RSQRKQEE---DESREEAAVEEENGIKEDAKDEVQKTDDVAXEKT 22
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00196280__16.m00469hypothetical_protein
(559 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
25791 31 1.2
>25791
Length = 773
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +3
Query: 434 KVELEKEFIDLEIEEDTLHKRIKDSKERLHQLKVDIELAAIKERDLSEQIDPISQKIDQL 493
K+ LE E + +E +LHK +KD E + + DL ++++ Q I L
Sbjct: 483 KLNLEIELQTITVENVSLHKELKDQVETI-------------KNDLGQEVESRDQTITNL 623
Query: 494 SKENPKRDQRVRDLEQEI 511
+E KRDQ + L+Q++
Sbjct: 624 RRELMKRDQTIDRLQQDV 677
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00399360__3713.m00028hypothetical_protein
(282 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07872 30 1.2
21286 28 3.6
>07872
Length = 2096
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 166 VSIEEKYNPELYIYKTYDMAADDPVWRQVKLDLEWTFENIAERRES 211
+SIE++ + +DM + P+WR V LDL ++++ R S
Sbjct: 1872 LSIEDRGRLSQTCSQLHDMFSAGPIWRCVHLDLLSLWDSVGYYRNS 1735
>21286
Length = 1212
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 2 RKALERFNEIIFNPA-IRWYQLPKPTVRRTRYPAPGSEPINRE-VHQIDYKTAFRDSPHN 59
+ A+E E++F I +++ P +R P + N Q DYK F+DSP
Sbjct: 232 KDAMELHVEVVFQSENIARFRITDPATKRFEVPMDLNLGTNSTPADQTDYKVTFQDSPFG 411
Query: 60 IR 61
I+
Sbjct: 412 IQ 417
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00837950__3743.m0004060s_Acidic_ribosomal_protein
(109 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11444 28 1.3
23862 26 3.3
09880 26 3.9
>11444
Length = 551
Score = 27.7 bits (60), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 17 ALLLNDCGLPITAANIAALFKTAKLNGHETTFKTFEDFLKTNPITN 62
+L L DC + + A I +++T +L +DF T+P+ N
Sbjct: 400 SLYLFDCNVFVLCA*IRFMYETCELIFENCYIMYVQDFHSTSPLMN 537
>23862
Length = 1532
Score = 26.2 bits (56), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Frame = -1
Query: 22 DCGLPITAANIAALFKTAKL------NGHETTFKTFEDF 54
CGL ++ AA F ++L N H+TTF F F
Sbjct: 1445 SCGLLLSQIRTAATFYQSRLLTTCSSNNHQTTFL*FSKF 1329
>09880
Length = 893
Score = 26.2 bits (56), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 6 IEKVVKGASYSALLLNDCGLPITAANIAALFKTAK 40
+E KG + +L DC LP+T N + T K
Sbjct: 312 MEHTAKGGKHK--ILEDCSLPLTGKNCVDMIITEK 410
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00338280__3689.m00102hypothetical_protein
(402 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04226 30 1.4
>04226
Length = 1338
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 269 FVNDTFTGFNPDPANPEDTEQVTLTEITGIVRRGEQQDILARRRNWNKEGIYNWV 323
+N T G NP+P +PE V TE+ G V G I +RR + K + N+
Sbjct: 1052 VLNMTRPGLNPEPPSPE--ADV*PTELCGPVTAGIHTCI--QRRGYKKAHLINYA 1204
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00522160__3717.m00028hypothetical_protein
(232 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06772 29 1.4
13055 28 3.1
26577 28 3.5
>06772
Length = 996
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 113 HGDPKPDNKKGSTCWLIALLLSIAQNIRNLLKSLQE--EANLVKQVLENQVEQESVKLND 170
HGDP+PD+ G LI+ + NI+ + +QE E N + QE LN
Sbjct: 506 HGDPEPDDAPGPEGRLISSEERM-HNIQLSREDVQEDTEENTTADMSMEATNQEDSALNG 682
Query: 171 QI 172
+I
Sbjct: 683 EI 688
>13055
Length = 429
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 113 HGDPKPDNKKGSTCWLIALLLSIAQNIRNLLKSLQE--EANLVKQVLENQVEQESVKLND 170
HGDP+PD+ G LI+ + NI+ + +QE E N + QE LN
Sbjct: 3 HGDPEPDDAPGPEGRLISSEERM-HNIQLSREDVQEDTEENTTADMSMEATNQEDSALNG 179
Query: 171 QI 172
+I
Sbjct: 180 EI 185
>26577
Length = 539
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = -3
Query: 127 WLIALLLSIAQNIRNLLKSLQEEANLVKQVLENQVEQESVKLNDQIAKIKKQRFDIYLSI 186
W+ L +S+ Q +R L ++ L V+ + LND I+ QRF ++L I
Sbjct: 297 WIPPLFVSL*QKLRRKLNC----VGVLISYLHRVVQMFVL*LNDYFIDIRYQRFGMFLCI 130
Query: 187 IKNLGDTITAGQASNLWPTLL 207
T ++ +N W L+
Sbjct: 129 Y-----TPSSPTDTNAWHVLI 82
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00310880__3696.m00164hypothetical_protein
(126 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
35335 26 1.5
07202 27 2.0
24120 26 5.2
17076 26 5.3
00229 25 6.0
>35335
Length = 642
Score = 25.8 bits (55), Expect(2) = 1.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 87 DSNINGVEKKLNKQILHREHNEHKLDGFV 115
D N++ V +KQ+ +R H+EH+L ++
Sbjct: 361 DRNVHPVIYGKSKQLTYRSHDEHQLRFYI 275
Score = 20.0 bits (40), Expect(2) = 1.5, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 38 GWISNVDLRLGRAIFTF 54
GW S+ +LR +FTF
Sbjct: 521 GWGSDRELRAALLLFTF 471
>07202
Length = 786
Score = 26.9 bits (58), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 24 QNLTAAQGETYSHLGWISNVDLRLGRAIFT 53
Q+ T AQG TY+HL ++ +R+ ++T
Sbjct: 192 QSYTYAQGHTYTHLNTHTHTVMRIHMHLYT 103
>24120
Length = 651
Score = 25.8 bits (55), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 42 NVDLRLGRAIFTFGV 56
+VDLR+G+ +FT GV
Sbjct: 469 DVDLRVGKXLFTLGV 513
>17076
Length = 411
Score = 25.8 bits (55), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 40 ISNVDLRLGRAIFTFGVVGIAFCIYLEPSYFHE 72
+ +VDL + R + F + + F IY+ +HE
Sbjct: 188 LKDVDLIMKRGLLIFVLTAVGFIIYIFVKIYHE 286
>00229
Length = 2312
Score = 25.4 bits (54), Expect = 6.0, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -2
Query: 36 HLGWISN---VDLRLGRAIFTFGV 56
HLG N VDLR+G+ +FT GV
Sbjct: 1582 HLGDCLNGPDVDLRVGKELFTLGV 1511
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00616270__3725.m00060hypothetical_protein
(231 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
19535 29 1.5
25982 28 4.2
>19535
Length = 966
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Frame = -3
Query: 49 EKNFKRILDVGVGTGHPLYSIIDRIPKSVQVTGIDIDTNYIP-AAKKIFSKHSNV----- 102
+K KRILDV GTG + SI+ + + +VT +D + A K+ +++
Sbjct: 763 QKGCKRILDVACGTG--VDSIM-LLEEGFEVTSVDASDKMLKYALKERWNRRKEPGFDQW 593
Query: 103 ---EIKYMNFY-DMEKEKTLKYD-VIIFSSSFMLMPD 134
E +++ Y D+++ + +D VI +SF + D
Sbjct: 592 VIEEANWLSLYDDIQEHRQAGFDAVICLGNSFAHLTD 482
>25982
Length = 429
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -1
Query: 11 QFIRFILSYIPVLIYNKIYSVYLTRYSYIDMADQWKGNEKNFKR---ILDVGVGTGHPL- 66
QFI+ +S++ +++ ++ Y +ID W + K + G+GTG P+
Sbjct: 231 QFIKQPVSHLTTIMF*LLFE*KPCSYCFIDCWQDWYSHLPFIKPNLLFMPRGLGTGRPIF 52
Query: 67 YSIIDRI 73
Y+++ R+
Sbjct: 51 YTLLSRV 31
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00462870__3823.m01109Eukaryotic_aspartyl_protease_family_pro
tein
(517 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06251 30 1.6
11362 30 2.4
12075 28 6.4
>06251
Length = 553
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 195 DKQFSLFFNQEMGRLLIGKNEKFFQNG--DLQTFKVTEDEEGQINFGVTLGPYINAKG 250
D FSLF++ + L++ NEK+F+ G L+ F +T D + +F L YI K
Sbjct: 248 DCSFSLFYSVKTWFLILR*NEKYFKFGIITLKQFCLTSDACQKESFRKNLNQYIRRKS 421
>11362
Length = 677
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 290 QRLNKQIFSFNGCSADQSGNYICDCESSSSTYVPLIFSFIN 330
+ ++ F C S ++ C +S+ + PLIFSF+N
Sbjct: 225 HLVKMEVVLFVSCHQSHSDSFTWHCPTSTLLFFPLIFSFLN 103
>12075
Length = 2906
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 141 NDITQLKDNYALPTNKCYLDQVKAGLGFGAPALQAPT--SPLSQIYEKLQVQN 191
N+ Q DNY L T +LD V +G+ F PA + P + Y K+ + N
Sbjct: 593 NNRVQQIDNYQLLTISSFLDLVASGIFF*KPA*EKPQFFGQYTTFYLKIHILN 751
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_01035530__206.m00037thioesterase_family_protein
(864 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
36889 32 1.6
08520 31 2.1
>36889
Length = 402
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Frame = +3
Query: 316 MHKQDRNIHGNIFGGHLMREAMEMGWLAALIH-------SKGDYPL-----TCH--VDDF 361
MH D + + LM W ++ + D P+ TCH V DF
Sbjct: 69 MHPVDEGLPSQVRQPALMVNMESFQWRKNVLQMTAMQADADADRPMITVRGTCHQSVTDF 248
Query: 362 QFLKPVAVGSIINFEAKLGYVV 383
QFL +AVG ++N KL V+
Sbjct: 249 QFLCSLAVGRLMNVRYKLDPVL 314
>08520
Length = 1100
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 624 KESHNKTAHQVPVFKFDGEKSVRNCNILYQ 653
K +H+KT ++ VF DG RNC L+Q
Sbjct: 74 KTTHSKTRTKIQVFHIDGHNLTRNCLTLFQ 163
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00051840__3824.m03118hypothetical_protein
(344 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09716 30 1.6
18077 28 4.3
>09716
Length = 1670
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 50 IKAQVVSIEEQESKFPTSNQAKTLIVSLAQILQ 82
I + ++ +EE++S FP NQA+ + LAQ L
Sbjct: 1667 IXSTIIYLEEEKSLFPPVNQARHTCLHLAQTLH 1569
>18077
Length = 1227
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +3
Query: 153 TTKKQKIIQLKEWTQVKKCERFFE----NNDKKMGEINQIKDITANN--KYVNILAV 203
T K + +++W Q C RFF N + + E+ +D+TA +YV L V
Sbjct: 240 VTGKDVLPFIEQWVQQSGCARFFGKFVFNRKRNVVELEMKQDLTARGGLRYVGPLTV 410
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
gi|TTHERM_00535500__3718.m00039DnaJ_domain_containing_protein
(499 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
15360 30 1.7
10686 28 7.7
02487 28 9.0
>15360
Length = 502
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 17 AFHTLRLKKDSHWLDVKDSYQYLLKKYHPDVNQNTPENVEMIKKLNIAYKTL 68
AF+ L + S +K Y+ L K+HP+ ++N E V+ ++ AY+ L
Sbjct: 58 AFNLLDIPAGSDQESLKTKYKQLALKWHPEKHKNAAEAVKQFIQVTQAYRLL 213
>10686
Length = 2220
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +1
Query: 284 IYGDLKFYFIEAGYFYRDIDEITFMDHKNIVKKPLTCIRQNH 325
+YGD+K F++ ++ F H+ + +C+ Q+H
Sbjct: 619 VYGDIKLVFLK---------QLXFTTHETVATAQXSCLTQSH 717
>02487
Length = 1910
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 311 KNIVKKPLTCIRQNHMVSISLEAERCLQNIFIKAEDLKRIVREKGYFECPG 361
+N +K L CI +NH+ + ++N I LK V+ K F+ PG
Sbjct: 479 ENFLKLYLWCINKNHLTAFQFSHLFFMRNRIINLLQLKVTVKYK*SFQNPG 327
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_01242400__287.m00021hypothetical_protein
(135 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
26328 28 1.7
>26328
Length = 442
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 113 EIYSKYNISTNPQALEILKSRI 134
E+++K+ ++ +PQ LEIL+ I
Sbjct: 219 EVFNKFRLADDPQVLEILRMGI 284
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|TTHERM_00703380__110.m00087hypothetical_protein
(1019 letters)
Database: contigs50plus
39,407 sequences; 28,359,218 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
17713 32 1.8
14223 31 2.4
>17713
Length = 493
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = +3
Query: 956 HEGIIALI-----NYSTLCAQKCDVLKGHDDKITDT 986
HE ++ L N + +CA+ D+L GHD++I DT
Sbjct: 168 HEKLLGLFEVVGANATDVCAEVGDLLPGHDERIVDT 275
>14223
Length = 1513
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -3
Query: 116 FEWIYGSQRNVDFVLCKQSGVVLY 139
F+++YGS N+D ++C+ G+ L+
Sbjct: 1382 FDYMYGSNHNLDLIVCEWRGIYLF 1311
BLAST Search Results
TBLASTN 2.2.18 [Mar-02-2008]