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Recent Papers






Ma, Shisong, and Bohnert, H.J. (2008). Gene Networks for the Integration and Understanding of Gene Expression Characteristics. Weed Science 56, pub March, 2008.[PDF]

Zhu, Jianhua, Jeong, J.C., Zhu, Y., Sokolchik, I., Miyazaki, S., Zhu, Jian-Kang, Hasegawa, P. M., Bohnert, H.J., Shi, H., Yun, Dae-Jin, and Bressan, Ray A. (2008). Involvement of Arabidopsis H0S15 in histone deacetylation and cold tolerance. PNAS, Epub March 20, 2008 [PDF] [PubMed]

Li, Pinghua, Ma, Shisong, and Bohnert, H.J. (2008). Coexpression characteristics of trehalose-6-phosphate phosphatase subfamily genes reveal different functions in a network context. Physiol Plant, Epub April 2008 [PDF] [PubMed]

Ma, Shisong , and Bohnert, H.J. (2008). Gene networks in Arabidopsis thaliana for metabolic and environmental functions. Mol Biosyst. Mar 4(3):199-204. Epub 2008 Jan 9.[PDF] [PubMed]

Ma, Shisong , and Bohnert, H.J. (2008). Gene networks[PDF]

Kim, J.-I., Shakhun, A., Li, P., Jeong, J.-C., Baek, D., Lee, S.-Y., Blakeslee, J.J., Murphy, A.S., Bohnert, H.J., Hasegawa, P.M., Yun, D.-J., and Bressan, R.A. (2007). Activation of the Arabidopsis HYPERTALL (HYT1/YUCCA6) locus affects several auxin-mediated responses to a staygreen phenotype. Plant Physiol, Epub September 20, 2007. [PubMed]

Ma, S., Gong, Q., and Bohnert, H.J. (2007). An Arabidopsis Gene Network based on the Graphical Gaussian Model. Genome Research, Epub October 5, 2007. [PubMed]

Ma, S. and Bohnert, H.J. (2007). Gene Networks for the Integration and better Understanding of Gene Expression Characteristics. Weed Science Journal, accepted (July 2007, contribution to a symposium issue, peer reviewed).

Burey, S.C., Poroyko, V., Ozturk, Z.N., Fathi-Nejad, S., Schuller, C., Ohnishi, N., Fukuzawa, H., Bohnert, H.J., and Loffelhardt, W. (2007). Acclimation to low [CO2] by an inorganic carbon concentrating mechanism in Cyanophora paradoxa. Plant Cell & Environment, 30: 1422-1435. [PubMed]

Oh, D.-H., Gong, Q., Ulanov, A., Zhang, Q., Li, Y., Bressan, R.A., Yun, D.-J., and Bohnert, H.J. (2007). Sodium stress in the halophyte Thellungiella halophila and transcriptional changes in a thsos1-RNAi line. Journal of Integrative Plant Biology 49: 1484-1496. [PDF]

Ma, S. and Bohnert, H.J. (2007). Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression. Genome Biology 8: R49; e-pub (April 2007). [PubMed]

Li, X., Wen, Z., Bohnert, H.J., Schuler, M., and Kushad, M. (2007). Cloning of a myrosinase cDNA from horseradish (Armoaracia rusticana) root and its heterologous expression in Spodoptera frugiperda insect cells. Plant Science 172: 1095-1102.

Sato, K., Ohsato, H., Izumi, S., Miyazaki, S., Bohnert, H.J., Moriyama, H., and Fukuhara, T. (2007). Diurnal expressions of five protein phosphatase type 2C genes in the common ice plant, Mesembryanthemum crystallinum. Functional Plant Biology 34: 581-588.

Li, P., Bohnert, H.J., and Grene, R. (2007). All about FACE - Plants in a high [CO2] World. Trends in Plant Sciences 12: 87-89. epub (December 2006). [PDF] [PubMed]

Lee, J., Nam, J., Park, H.C., Na, G., Miura, K., Jin, J.B., Yoo, C.Y., Baek, D., Kim, D.H., Jeong, J.C., Kim, D., Lee, S.Y., Salt, D., Mengiste, T., Gong, Q., Ma, S., Bohnert, H.J., Kwak, S.S., Bressan, R.A., Hasegawa, P.M., and Yun, D.J. (2007) Salicylic acid-mediated innate immunity in Arabidopsis is regulated by SIZ1 SUMO E3 ligase. Plant J, 49, 79-90 [PDF] [PubMed]

Li, P., Sioson, A.A., Mane, S.P., Ulanov, A., Grothaus, G., Heath, L.S., Murali, T.M., Bohnert, H.J., and Grene, R. (2006) Response Diversity of Arabidopsis thaliana ecotypes in elevated CO2 in the field. Plant Mol Biol, 62, 593-609 [PDF] [PubMed]

Poroyko, V., Spollen, W., Hejlik, L.G., Hernandez, A.G., LeNoble, M., Davis, G., Nguyen, H.T., Springer, G.K., Sharp, R.E., and Bohnert, H.J. (2006) Regional transcript profiles from well-watered and water-stressed maize primary roots. J Exp Bot, 58: 279-289. [PDF] [PubMed]

Watkinson, J.I., Hendricks, L., Sioson, A.A., Vasquez-Robinet, C., Stromberg, V., Heath, L.S., Schuler, M., Bohnert, H.J., Bonierbale, M., and Grene, R. (2006) Accessions of Solanum tuberosum ssp. andigena show differences in physiological adaptation and acclimation to drought stress as reflected in gene expression profiles. Plant Sci, in press.

Talame, V., Ozturk, Z.N., Bohnert, H.J., and Tuberosa, R. (2006) Barley transcript profiles under dehydration shock and drought stress treatments: a comparative analysis. J Exp Bot, 58: 229-240. [PDF] [PubMed]

Bohnert, H.J., Bressan, R.A., and Hasegawa, P.M. (2006) Ion Homeostasis and Water Deficit. In (JM Ribaut, ed.) Drought Tolerance in Cereals. Haworth Press, New York, in press, July 2006.

Platten, J.D., Cotsaftis, O., Berthomieu, P., Bohnert, H., Davenport, R.J., Fairbairn, D.J., Horie, T., Leigh, R.A., Lin, H.X., Luan, S., Maser, P., Pantoja, O., Rodriguez-Navarro, A., Schachtman, D.P., Schroeder, J.I., Sentenac, H., Uozumi, N., Very, A.A., Zhu, J.K., Dennis, E.S., and Tester, M. (2006) Nomenclature for HKT genes, central for plant salinity tolerance. Trends Plant Sci. in press. [PDF] [PubMed]

Li, P., Mane, S.P., Sioson, A.A., Robinet, C.V., Heath, L.S., Bohnert, H.J., Grene, R. (2006). Effects of chronic ozone exposure on gene expression in Arabidopsis thaliana ecotypes and in Thellungiella halophila. Plant, Cell and Environment 29, 854-868. [PDF] [PubMed]

B hnert, H.J., Gong, Q., Li, P., and Ma, S. (2006). Unraveling abiotic stress tolerance mechanisms--getting genomics going. Curr Opin Plant Biol 9, 180-188. [PDF] [PubMed]

Ma, S., Gong, Q., and Bohnert, H.J. (2006). Dissecting salt stress pathways. J Exp Bot 57, 1097-1107. [PDF] [PubMed]

Dyachenko, O.V., Zakharchenko, N.S., Shevchuk, T.V., Bohnert, H.J., Cushman, J.C., and Buryanov, Y.I. (2006). Effect of hypermethylation of CCWGG sequences in DNA of Mesembryanthemum crystallinum plants on their adaptation to salt stress. Biochemistry (Mosc) 71, 461-465. [PDF] [PubMed]

Kolossov, V.L., Bohnert, H.J., and Rebeiz, C.A. (2006). Chloroplast biogenesis 92: In situ screening for divinyl chlorophyll(ide) a reductase mutants by spectrofluorometry. Anal Biochem 348, 192-197. [PDF] [PubMed]

Sioson, A.A., Mane, S.P., Li, P., Sha, W., Heath, L.S., Bohnert, H.J., and Grene, R. (2006). The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison. BMC Bioinformatics 7, 215. [PDF] [PubMed]

Gong, Q., Li, P., Ma, S., Indu Rupassara, S., and Bohnert, H.J. (2005). Salinity stress adaptation competence in the extremophile Thellungiella halophila in comparison with its relative Arabidopsis thaliana. Plant J 44, 826-839. [PDF] [PubMed]

Poroyko, V., Hejlek, L.G., Spollen, W.G., Springer, G.K., Nguyen, H.T., Sharp, R.E., and Bohnert, H.J. (2005). The maize root transcriptome by serial analysis of gene expression. Plant Physiol 138, 1700-1710. [PDF] [PubMed]

Burey, S.C., Fathi-Nejad, S., Poroyko, V., Steiner, J.M., Loffelhardt, W., and Bohnert, H.J. (2005). The central body of the cyanelles of Cyanophora paradoxa: a eukaryotic carboxysome? Can J Bot 83, 758-764. [PDF]

Amtmann, A., Bohnert, H.J., and Bressan, R.A. (2005). Abiotic stress and plant genome evolution. Search for new models. Plant Physiol 138, 127-130. [PDF] [PubMed]

b>Chiang, Y.J., Stushnoff, C., McSay, A.E., Jones, M.L., Bohnert, H.J. (2005). Overexpression of mannitol-1-phosphate dehydrogenase increases mannitol production and enhances chilling tolerance in Petunia. Journal American Society of Horticultural Sciences 130: 605-610.

Miyazaki, S., Nevo, E., and Bohnert, H.J. (2005). Adaptive oxidative stress in yeast, Saccharomyces cerevisiae: Interslope genetic divergence in "Evolution Canyon". Biol. J. Linnean Society 84: 103-117.

Boxall, S.F., Foster, J.M., Bohnert, H.J., Cushman, J.C., Nimmo, H.G., and Hartwell, J. (2005). Conservation and divergence of circadian clock operation in a stress-inducible Crassulacean acid metabolism species reveals clock compensation against stress. Plant Physiol 137, 969-982. [PDF] [PubMed]

Rodriguez-Ezpeleta, N., Brinkmann, H., Burey, S.C., Roure, B., Burger, G., Loffelhardt, W., Bohnert, H.J., Philippe, H., and Lang, B.F. (2005). Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol 15, 1325-1330. [PDF] [PubMed]

Inan, G., Zhang, Q., Li, P., Wang, Z., Cao, Z., Zhang, H., Zhang, C., Quist, T.M., Goodwin, S.M., Zhu, J., Shi, H., Damsz, B., Charbaji, T., Gong, Q., Ma, S., Fredricksen, M., Galbraith, D.W., Jenks, M.A., Rhodes, D., Hasegawa, P.M., Bohnert, H.J., Joly, R.J., Bressan, R.A., and Zhu, J.K. (2004). Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles. Plant Physiol 135, 1718-1737. [PDF] [PubMed]

Ma, S., Quist, T.M., Ulanov, A., Joly, R., and Bohnert, H.J. (2004). Loss of TIP1;1 aquaporin in Arabidopsis leads to cell and plant death. Plant J 40, 845-859. [PDF] [PubMed]

Miyazaki, S., Fredricksen, M., Hollis, K.C., Poroyko, V., Shepley, D., Galbraith, D.W., Long, S., and Bohnert, H.J. (2004). Expression profiles for Arabidopsis thaliana grown at UIUC SoyFACE. Field Crops Research 90: 47-59.

Wang, Z.I., Li, P., Fredricksen, M., Gong, Z.H., Kim, C.S., Zhang, C.Q., Bohnert, H.J., Zhu, J.K., Bressan, R.A., Hasegawa, P.M., Zhao, Y.X., and Zhang, H. (2004). Expressed sequence tags from Thellungiella halophila, a new model to study plant salt-tolerance. Plant Science 166: 609-616.

Poroyko, V., Calugaru, V., Fredricksen, M., and Bohnert, H.J. (2004). Virtual-SAGE: a new approach to EST data analysis. DNA Res 11, 145-152. [PDF] [PubMed]

Downie, A.L., Miyazaki, S., Bohnert, H.J., John, P., Coleman, J.O.D., Parry, M.A.J., and Haslam, R.P. (2004). Methanol-regulated gene expression in Arabidopsis thaliana. Phytochemistry 65: 2305-2316. [PDF] [PubMed]

Sharp, R.E., Poroyko, V., Hejlek, L.G., Spollen, W.G., Springer, G.K., Bohnert, H.J., and Nguyen, H.T. (2004). Root growth maintenance during water deficits: physiology to functional genomics. J Exp Bot 55, 2343-2351. [PDF] [PubMed]

Vera-Estrella, R., Barkla, B.J., Bohnert, H.J., and Pantoja, O. (2004). Novel regulation of aquaporins during osmotic stress. Plant Physiol 135, 2318-2329. [PDF] [PubMed]

Miyazaki, S., Rice, M., Quigley, F., and Bohnert, H.J. (2004). The expression of plant inositol transporters in yeast. Plant Science 166: 245-252.

Miyazaki, S., Nevo, E., Grishkan, I., Idleman, U., Weinberg, D., and Bohnert, H.J. (2003). Oxidative Stress Responses in Yeast Strains, Saccharomyces cerevisiae, isolated from natural Habitats. Chemical Monthly/Monatshefte f?r Chemie 134: 1465-1480.

Golldack, D., Quigley, F., Michalowski, C.B., Kamasani, U.R., and Bohnert, H.J. (2003). Salinity stress-tolerant and -sensitive rice (Oryza sativa L.) regulate AKT1-type potassium channel transcripts differently. Plant Mol Biol 51, 71-81. [PDF] [PubMed]

Su, H., Balderas, E., Vera-Estrella, R., Golldack, D., Quigley, F., Zhao, C., Pantoja, O., and Bohnert, H.J. (2003). Expression of the cation transporter McHKT1 in a halophyte. Plant Mol Biol 52, 967-980. [PDF] [PubMed]

Wang, H., Miyazaki, S., Kawai, K., Deyholos, M., Galbraith, D.W., and Bohnert, H.J. (2003). Temporal progression of gene expression responses to salt shock in maize roots. Plant Mol Biol 52, 873-891. [PDF] [PubMed]

Golldack, D., Su, H., Quigley, F., Kamasani, U.R., Munoz-Garay, C., Balderas, E., Popova, O.V., Bennett, J., Bohnert, H.J., and Pantoja, O. (2002). Characterization of a HKT-type transporter in rice as a general alkali cation transporter. Plant J 31, 529-542. [PDF] [PubMed]

Oztur, Z.N., Talame, V., Deyholos, M., Michalowski, C.B., Galbraith, D.W., Gozukirmizi, N., Tuberosa, R., and Bohnert, H.J. (2002). Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley. Plant Mol Biol 48, 551-573. [PDF] [PubMed]

Quigley, F., Rosenberg, J.M., Shachar-Hill, Y., and Bohnert, H.J. (2002). From genome to function: the Arabidopsis aquaporins. Genome Biol 3, RESEARCH0001. [PDF] [PubMed]

Su, H., Golldack, D., Zhao, C., and Bohnert, H.J. (2002). The expression of HAK-type K(+) transporters is regulated in response to salinity stress in common ice plant. Plant Physiol 129, 1482-1493. [PDF] [PubMed]





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  Contact Information:
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1201 W. Gregory Drive
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University of Illinois, Urbana-Champaign
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Tel: 217-265-5475
E-Mail: bohnerth@life.uiuc.edu
 
   

Page last updated:
12 December 2007